getsize <sequences> [options]
The program getsize prints statistics about sequences read from a FASTA file.
A file in FASTA format. If the filename is given as "-", then the program reads from standard input.
Writes statistics about the sequences to standard output.
Option | Parameter | Description | Default Behaviour |
---|---|---|---|
General Options | |||
-dna | Print DNA frequencies in background file format. | ||
-prot | Print protein frequencies in background file format. | ||
-rna | Print RNA frequencies in background file format. | ||
-alph | file | Use the alphabet defintion in the specified file and print frequencies in background file format. | |
-f | Print letter frequences. | ||
-ft | Print letter frequences in a LaTex table. | ||
-l | Just print the length of each sequence. | ||
-nd | Do not print warnings about duplicate sequences. | ||
-x | Translate DNA in 6 frames. | ||
-codons | Print frame 0 codon usage. |