meme2meme [options] [<meme motif file>]+
Convert and merge multiple MEME formatted files into a single minimal meme format file.
A motif file in one of the formats output by MEME or DREME.
| Option | Parameter | Description | Default Behaviour |
|---|---|---|---|
| Input/Output | |||
| -consensus | Numeric names are swapped for an IUPAC consensus. | The original names are used. | |
| -forceurl | MEME motifs may already have URLs embedded but this option causes them to be replaced by the URL passed to -url. | Existing URLs are kept. | |
| -xalph | Convert all motifs to use the same alphabet as specified in the first motif file. The alphabet specifed in the first motif file must contain a superset of all the core symbols in the other motif file alphabets. | All motif files must use the same alphabet. | |