******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.11.3 (Release date: Fri Feb 19 13:23:06 2016 -0800) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= common/adh.s ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 2BHD_STREX 1.0000 255 3BHD_COMTE 1.0000 253 ADH_DROME 1.0000 255 AP27_MOUSE 1.0000 244 BA72_EUBSP 1.0000 249 BDH_HUMAN 1.0000 343 BPHB_PSEPS 1.0000 275 BUDC_KLETE 1.0000 241 DHES_HUMAN 1.0000 327 DHGB_BACME 1.0000 262 DHII_HUMAN 1.0000 292 DHMA_FLAS1 1.0000 270 ENTA_ECOLI 1.0000 248 FIXR_BRAJA 1.0000 278 GUTD_ECOLI 1.0000 259 HDE_CANTR 1.0000 906 HDHA_ECOLI 1.0000 255 LIGD_PSEPA 1.0000 305 NODG_RHIME 1.0000 245 RIDH_KLEAE 1.0000 249 YINL_LISMO 1.0000 248 YRTP_BACSU 1.0000 238 CSGA_MYXXA 1.0000 166 DHB2_HUMAN 1.0000 387 DHB3_HUMAN 1.0000 310 DHCA_HUMAN 1.0000 276 FABI_ECOLI 1.0000 262 FVT1_HUMAN 1.0000 332 HMTR_LEIMA 1.0000 287 MAS1_AGRRA 1.0000 476 PCR_PEA 1.0000 399 RFBB_NEIGO 1.0000 346 YURA_MYXXA 1.0000 258 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme common/adh.s -text -mod zoops -protein -nostatus -nmotifs 2 -minw 8 -text model: mod= zoops nmotifs= 2 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 33 wnsites= 0.8 theta: spmap= pam spfuzz= 120 global: substring= yes branching= no wbranch= no em: prior= megap b= 49980 maxiter= 50 distance= 1e-05 data: n= 9996 N= 33 shuffle= -1 sample: seed= 0 ctfrac= -1 maxwords= -1 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052 L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083 W 0.010 Y 0.027 Background letter frequencies (from dataset with add-one prior applied): A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052 L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083 W 0.010 Y 0.027 ******************************************************************************** ******************************************************************************** MOTIF KVALVTGASSGIGKATAKALAKEGAKVVL MEME-1 width = 29 sites = 30 llr = 1105 E-value = 5.1e-168 ******************************************************************************** -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKATAKALAKEGAKVVL MEME-1 Description -------------------------------------------------------------------------------- Simplified A :14::::531:::1517:2:322:51:11 pos.-specific C :::::::1::::::::1:::::::::::: probability D ::::::::1:::::1:::1:::1:::::: matrix E ::::::::::::::2::11::22:::::: F :::::::::::::1:::::3::::1::1: G ::::::a4319:a:::::1::1:8:::1: H :::::::::::::1::::1:1:::::::: I ::124::::::6:::2:1::1:::::1:1 K 61:::::::2:::3:::3:::21:13::: L :::5:::::::3:2:2:1161:1:1:1:3 M :::::::::::::::1::::::::::::: N :1::::::1:::::::::::::1::1::: P 1:::::::::::::::::::::::::::: Q 1::::::::1:::::::::::11:::::: R :::::::::2:::2:::21::11::1::: S :::::::133::::1:1::::11:1111: T :1:::9:::::::::3::1::1:::::1: V :5425::::::1:::12:1:1:::::653 W ::::::::::::::::::::::::::::: Y :::::::::::::::1::::::::1:::: bits 6.7 6.0 5.4 4.7 Relative 4.0 Entropy 3.4 ** * (53.1 bits) 2.7 *** *** * * 2.0 * ****** *** * * * * 1.3 ****************** *** ** *** 0.7 ***************************** 0.0 ----------------------------- Multilevel KVALVTGAASGIGKATAKXLAAEGAKVVL consensus VII GG L LEIV F KA V sequence S R -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKATAKALAKEGAKVVL MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- HDE_CANTR 323 4.08e-23 SGAPTVSLKD KVVLITGAGAGLGKEYAKWFAKYGAKVVV NDFKDATKTV DHII_HUMAN 35 2.37e-22 EEFRPEMLQG KKVIVTGASKGIGREMAYHLAKMGAHVVV TARSKETLQK YINL_LISMO 6 8.18e-22 MTIKN KVIIITGASSGIGKATALLLAEKGAKLVL AARRVEKLEK HDHA_ECOLI 12 3.11e-20 FNSDNLRLDG KCAIITGAGAGIGKEIAITFATAGASVVV SDINADAANH BUDC_KLETE 3 3.50e-20 MQ KVALVTGAGQGIGKAIALRLVKDGFAVAI ADYNDATATA RIDH_KLEAE 15 4.96e-20 VSSMNTSLSG KVAAITGAASGIGLECARTLLGAGAKVVL IDREGEKLNK ENTA_ECOLI 6 1.92e-19 MDFSG KNVWVTGAGKGIGYATALAFVEAGAKVTG FDQAFTQEQY YRTP_BACSU 7 6.27e-19 MQSLQH KTALITGGGRGIGRATALALAKEGVNIGL IGRTSANVEK AP27_MOUSE 8 6.97e-19 MKLNFSG LRALVTGAGKGIGRDTVKALHASGAKVVA VTRTNSDLVS DHGB_BACME 8 1.60e-18 MYKDLEG KVVVITGSSTGLGKSMAIRFATEKAKVVV NYRSKEDEAN DHMA_FLAS1 15 2.40e-18 VSRRPGRLAG KAAIVTGAAGGIGRATVEAYLREGASVVA MDLAPRLAAT DHB3_HUMAN 49 4.37e-18 LPKSFLRSMG QWAVITGAGDGIGKAYSFELAKRGLNVVL ISRTLEKLEA BA72_EUBSP 7 5.87e-18 MNLVQD KVTIITGGTRGIGFAAAKIFIDNGAKVSI FGETQEEVDT 3BHD_COMTE 7 5.87e-18 TNRLQG KVALVTGGASGVGLEVVKLLLGEGAKVAF SDINEAAGQQ BDH_HUMAN 56 1.05e-17 YASAAEPVGS KAVLVTGCDSGFGFSLAKHLHSKGFLVFA GCLMKDKGHD PCR_PEA 87 1.40e-17 SSEGKKTLRK GNVVITGASSGLGLATAKALAESGKWHVI MACRDYLKAA FIXR_BRAJA 37 3.26e-17 VNARVDRGEP KVMLLTGASRGIGHATAKLFSEAGWRIIS CARQPFDGER FVT1_HUMAN 33 4.71e-17 ISPKPLALPG AHVVVTGGSSGIGKCIAIECYKQGAFITL VARNEDKLLQ DHB2_HUMAN 83 5.17e-17 SGQELLPVDQ KAVLVTGGDCGLGHALCKYLDELGFTVFA GVLNENGPGA HMTR_LEIMA 7 5.66e-17 MTAPTV PVALVTGAAKRLGRSIAEGLHAEGYAVCL HYHRSAAEAN 2BHD_STREX 7 6.20e-17 MNDLSG KTVIITGGARGLGAEAARQAVAAGARVVL ADVLDEEGAA LIGD_PSEPA 7 7.14e-16 MKDFQD QVAFITGGASGAGFGQAKVFGQAGAKIVV ADVRAEAVEK NODG_RHIME 7 1.08e-15 MFELTG RKALVTGASGAIGGAIARVLHAQGAIVGL HGTQIEKLET DHCA_HUMAN 5 3.67e-15 SSGI HVALVTGGNKGIGLAIVRDLCRLFSGDVV LTARDVTRGQ MAS1_AGRRA 246 7.47e-15 SHWTVEIHQS PVILVSGSNRGVGKAIAEDLIAHGYRLSL GARKVKDLEV DHES_HUMAN 3 2.96e-14 AR TVVLITGCSSGIGLHLAVRLASDPSQSFK VYATLRDLKT BPHB_PSEPS 6 3.70e-14 MKLKG EAVLITGGASGLGRALVDRFVAEAKVAVL DKSAERLAEL GUTD_ECOLI 3 1.19e-13 MN QVAVVIGGGQTLGAFLCHGLAAEGYRVAV VDIQSDKAAN RFBB_NEIGO 7 3.94e-13 MQTEGK KNILVTGGAGFIGSAVVRHIIQNTRDSVV NLDKLTYAGN ADH_DROME 7 5.77e-11 SFTLTN KNVIFVAGLGGIGLDTSKELLKRDLKNLV ILDRIENPAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKATAKALAKEGAKVVL MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- HDE_CANTR 4.1e-23 322_[1]_555 DHII_HUMAN 2.4e-22 34_[1]_229 YINL_LISMO 8.2e-22 5_[1]_214 HDHA_ECOLI 3.1e-20 11_[1]_215 BUDC_KLETE 3.5e-20 2_[1]_210 RIDH_KLEAE 5e-20 14_[1]_206 ENTA_ECOLI 1.9e-19 5_[1]_214 YRTP_BACSU 6.3e-19 6_[1]_203 AP27_MOUSE 7e-19 7_[1]_208 DHGB_BACME 1.6e-18 7_[1]_226 DHMA_FLAS1 2.4e-18 14_[1]_227 DHB3_HUMAN 4.4e-18 48_[1]_233 BA72_EUBSP 5.9e-18 6_[1]_214 3BHD_COMTE 5.9e-18 6_[1]_218 BDH_HUMAN 1.1e-17 55_[1]_259 PCR_PEA 1.4e-17 86_[1]_284 FIXR_BRAJA 3.3e-17 36_[1]_213 FVT1_HUMAN 4.7e-17 32_[1]_271 DHB2_HUMAN 5.2e-17 82_[1]_276 HMTR_LEIMA 5.7e-17 6_[1]_252 2BHD_STREX 6.2e-17 6_[1]_220 LIGD_PSEPA 7.1e-16 6_[1]_270 NODG_RHIME 1.1e-15 6_[1]_210 DHCA_HUMAN 3.7e-15 4_[1]_243 MAS1_AGRRA 7.5e-15 245_[1]_202 DHES_HUMAN 3e-14 2_[1]_296 BPHB_PSEPS 3.7e-14 5_[1]_241 GUTD_ECOLI 1.2e-13 2_[1]_228 RFBB_NEIGO 3.9e-13 6_[1]_311 ADH_DROME 5.8e-11 6_[1]_220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKATAKALAKEGAKVVL MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KVALVTGASSGIGKATAKALAKEGAKVVL width=29 seqs=30 HDE_CANTR ( 323) KVVLITGAGAGLGKEYAKWFAKYGAKVVV 1 DHII_HUMAN ( 35) KKVIVTGASKGIGREMAYHLAKMGAHVVV 1 YINL_LISMO ( 6) KVIIITGASSGIGKATALLLAEKGAKLVL 1 HDHA_ECOLI ( 12) KCAIITGAGAGIGKEIAITFATAGASVVV 1 BUDC_KLETE ( 3) KVALVTGAGQGIGKAIALRLVKDGFAVAI 1 RIDH_KLEAE ( 15) KVAAITGAASGIGLECARTLLGAGAKVVL 1 ENTA_ECOLI ( 6) KNVWVTGAGKGIGYATALAFVEAGAKVTG 1 YRTP_BACSU ( 7) KTALITGGGRGIGRATALALAKEGVNIGL 1 AP27_MOUSE ( 8) LRALVTGAGKGIGRDTVKALHASGAKVVA 1 DHGB_BACME ( 8) KVVVITGSSTGLGKSMAIRFATEKAKVVV 1 DHMA_FLAS1 ( 15) KAAIVTGAAGGIGRATVEAYLREGASVVA 1 DHB3_HUMAN ( 49) QWAVITGAGDGIGKAYSFELAKRGLNVVL 1 BA72_EUBSP ( 7) KVTIITGGTRGIGFAAAKIFIDNGAKVSI 1 3BHD_COMTE ( 7) KVALVTGGASGVGLEVVKLLLGEGAKVAF 1 BDH_HUMAN ( 56) KAVLVTGCDSGFGFSLAKHLHSKGFLVFA 1 PCR_PEA ( 87) GNVVITGASSGLGLATAKALAESGKWHVI 1 FIXR_BRAJA ( 37) KVMLLTGASRGIGHATAKLFSEAGWRIIS 1 FVT1_HUMAN ( 33) AHVVVTGGSSGIGKCIAIECYKQGAFITL 1 DHB2_HUMAN ( 83) KAVLVTGGDCGLGHALCKYLDELGFTVFA 1 HMTR_LEIMA ( 7) PVALVTGAAKRLGRSIAEGLHAEGYAVCL 1 2BHD_STREX ( 7) KTVIITGGARGLGAEAARQAVAAGARVVL 1 LIGD_PSEPA ( 7) QVAFITGGASGAGFGQAKVFGQAGAKIVV 1 NODG_RHIME ( 7) RKALVTGASGAIGGAIARVLHAQGAIVGL 1 DHCA_HUMAN ( 5) HVALVTGGNKGIGLAIVRDLCRLFSGDVV 1 MAS1_AGRRA ( 246) PVILVSGSNRGVGKAIAEDLIAHGYRLSL 1 DHES_HUMAN ( 3) TVVLITGCSSGIGLHLAVRLASDPSQSFK 1 BPHB_PSEPS ( 6) EAVLITGGASGLGRALVDRFVAEAKVAVL 1 GUTD_ECOLI ( 3) QVAVVIGGGQTLGAFLCHGLAAEGYRVAV 1 RFBB_NEIGO ( 7) KNILVTGGAGFIGSAVVRHIIQNTRDSVV 1 ADH_DROME ( 7) KNVIFVAGLGGIGLDTSKELLKRDLKNLV 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKATAKALAKEGAKVVL MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 9072 bayes= 8.12412 E= 5.1e-168 -135 -319 -212 -22 -360 -140 85 -362 329 -140 -281 -173 52 170 -22 -189 -51 -355 -331 -281 11 121 -285 -215 -278 -396 72 -187 34 -257 -214 144 -331 -160 -47 -234 18 235 148 -272 186 -316 -673 -617 -402 -655 -547 99 -595 -322 30 -576 -598 -547 -609 -523 -72 225 -507 -475 -165 -274 -583 -504 -3 -558 -390 194 -473 241 -175 -469 -484 -391 -461 -415 -338 94 163 -335 -534 -363 -749 -712 -13 -774 -705 291 -703 -115 -341 -678 -687 -663 -739 -662 -464 256 -605 -566 -381 -243 -425 -454 -425 -525 -357 -99 -368 -451 -311 -250 -429 -310 -382 -17 388 -142 -398 -446 -191 -337 -328 -389 -495 336 -351 -514 -372 -557 -461 -284 -433 -384 -375 -299 -414 -497 -388 -440 205 242 -648 -644 -609 210 -567 -627 -660 -639 -563 -521 -482 -522 -606 18 -365 -500 -585 -629 118 -380 51 -306 -533 148 -270 -568 -320 -151 -508 87 -433 -281 -392 199 -66 -538 -516 -441 -65 119 -37 -130 -349 34 -142 -353 159 -340 -273 -162 -289 123 157 200 -49 -346 -324 -272 -197 -330 -310 -372 -105 327 -335 -499 -354 -543 -446 -266 -420 -369 -129 -289 -154 -485 -372 -424 -205 -309 -512 -496 -45 -587 -457 343 -457 117 -171 -453 -514 -427 -491 -439 -353 23 -387 -367 -580 -545 -561 -628 -691 346 -560 -746 -609 -754 -700 -528 -620 -606 -602 -546 -643 -734 -581 -645 -67 -302 -227 -155 122 -141 171 -324 220 89 -267 -185 -308 -101 183 -57 -217 -328 -325 19 235 102 -18 115 -68 -147 27 -325 -248 -333 -271 -254 -384 -218 -288 40 -231 -231 -321 -336 -67 137 -484 -406 -217 -448 -290 194 -373 84 126 -362 -395 10 -368 -302 206 -3 -257 117 260 215 -486 -446 -421 -324 -419 -408 -449 -425 -362 -423 -459 -398 -445 10 -295 95 -408 -457 -264 -289 -40 85 -25 -357 85 60 247 34 -254 -174 -295 -94 157 -186 -204 -121 -314 18 43 -301 37 87 -338 -57 223 -83 -112 -6 -264 -163 -287 54 128 -177 24 -45 151 17 -182 120 -592 -511 261 -594 -394 -46 -484 273 -152 -494 -486 -385 -460 -453 -379 -278 -324 13 143 136 -76 -395 -220 -148 264 87 -364 55 -160 -356 -393 -302 -363 -81 -234 71 -259 27 87 -309 -36 148 -347 -57 -140 -351 200 -338 -271 -161 -286 123 45 16 24 -343 -322 -270 66 -307 38 190 -344 -346 86 -349 57 -58 16 70 -284 123 45 16 -198 -342 -320 17 -198 -331 -120 -371 -106 322 -334 -499 -134 -543 -445 -265 -116 -368 -358 -289 -154 -485 -371 -424 223 -118 -394 -332 101 -322 -282 -205 -6 -60 -201 -328 -398 -274 -87 0 -231 -90 129 138 -64 -307 -36 -126 -29 -139 86 -86 246 -139 -268 70 -284 55 128 16 -48 -129 150 -268 -142 -122 -185 -327 -279 -440 -52 64 -334 -127 -222 -160 -317 -306 -309 -125 -172 308 -337 -380 -39 108 -429 -373 100 -92 -279 -11 -358 -108 -178 -357 -362 -307 -345 -32 0 266 -281 -282 18 -180 -484 -406 0 -148 -290 89 -70 173 -158 -362 -395 -308 -368 -83 -235 174 -257 -247 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKATAKALAKEGAKVVL MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 30 E= 5.1e-168 0.033333 0.000000 0.000000 0.033333 0.000000 0.033333 0.033333 0.000000 0.600000 0.033333 0.000000 0.000000 0.066667 0.100000 0.033333 0.000000 0.033333 0.000000 0.000000 0.000000 0.133333 0.033333 0.000000 0.000000 0.000000 0.000000 0.033333 0.000000 0.066667 0.000000 0.000000 0.133333 0.000000 0.000000 0.033333 0.000000 0.066667 0.466667 0.033333 0.000000 0.433333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.000000 0.033333 0.000000 0.000000 0.000000 0.000000 0.000000 0.033333 0.400000 0.000000 0.000000 0.033333 0.000000 0.000000 0.000000 0.033333 0.000000 0.000000 0.233333 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.033333 0.000000 0.000000 0.000000 0.000000 0.000000 0.033333 0.000000 0.000000 0.433333 0.000000 0.033333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.033333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.033333 0.900000 0.033333 0.000000 0.000000 0.033333 0.000000 0.000000 0.000000 0.000000 0.966667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.466667 0.066667 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.066667 0.000000 0.000000 0.000000 0.000000 0.266667 0.000000 0.066667 0.000000 0.000000 0.266667 0.000000 0.000000 0.000000 0.033333 0.000000 0.066667 0.000000 0.000000 0.000000 0.266667 0.033333 0.000000 0.000000 0.000000 0.066667 0.033333 0.033333 0.000000 0.000000 0.133333 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000 0.000000 0.066667 0.166667 0.300000 0.033333 0.000000 0.000000 0.000000 0.033333 0.000000 0.000000 0.000000 0.033333 0.866667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.033333 0.000000 0.033333 0.000000 0.000000 0.000000 0.033333 0.000000 0.000000 0.000000 0.033333 0.000000 0.000000 0.600000 0.000000 0.266667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.066667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.066667 0.000000 0.000000 0.000000 0.100000 0.033333 0.066667 0.000000 0.266667 0.200000 0.000000 0.000000 0.000000 0.000000 0.200000 0.033333 0.000000 0.000000 0.000000 0.033333 0.500000 0.033333 0.066667 0.200000 0.033333 0.033333 0.033333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.000000 0.000000 0.000000 0.066667 0.033333 0.000000 0.000000 0.000000 0.000000 0.000000 0.233333 0.000000 0.166667 0.066667 0.000000 0.000000 0.033333 0.000000 0.000000 0.266667 0.066667 0.000000 0.066667 0.666667 0.066667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.066667 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.033333 0.100000 0.033333 0.000000 0.033333 0.100000 0.333333 0.133333 0.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.033333 0.000000 0.033333 0.166667 0.000000 0.066667 0.100000 0.000000 0.066667 0.100000 0.033333 0.000000 0.100000 0.000000 0.000000 0.000000 0.033333 0.133333 0.000000 0.066667 0.066667 0.033333 0.033333 0.033333 0.033333 0.000000 0.000000 0.266667 0.000000 0.000000 0.033333 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.033333 0.333333 0.033333 0.033333 0.000000 0.000000 0.033333 0.133333 0.100000 0.000000 0.133333 0.000000 0.000000 0.000000 0.000000 0.000000 0.033333 0.000000 0.133333 0.000000 0.033333 0.233333 0.000000 0.033333 0.166667 0.000000 0.066667 0.000000 0.000000 0.233333 0.000000 0.000000 0.000000 0.000000 0.066667 0.066667 0.066667 0.066667 0.000000 0.000000 0.000000 0.200000 0.000000 0.066667 0.233333 0.000000 0.000000 0.033333 0.000000 0.066667 0.066667 0.033333 0.066667 0.000000 0.066667 0.066667 0.066667 0.000000 0.000000 0.000000 0.033333 0.033333 0.000000 0.033333 0.000000 0.033333 0.800000 0.000000 0.000000 0.033333 0.000000 0.000000 0.000000 0.033333 0.000000 0.000000 0.000000 0.033333 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.100000 0.000000 0.000000 0.000000 0.066667 0.066667 0.000000 0.000000 0.000000 0.000000 0.033333 0.066667 0.000000 0.033333 0.033333 0.100000 0.066667 0.000000 0.033333 0.000000 0.033333 0.033333 0.033333 0.033333 0.333333 0.033333 0.000000 0.066667 0.000000 0.033333 0.133333 0.066667 0.033333 0.033333 0.033333 0.000000 0.033333 0.000000 0.033333 0.000000 0.000000 0.000000 0.033333 0.133333 0.000000 0.066667 0.000000 0.033333 0.000000 0.000000 0.000000 0.066667 0.000000 0.600000 0.000000 0.000000 0.100000 0.033333 0.000000 0.000000 0.100000 0.066667 0.000000 0.033333 0.000000 0.033333 0.000000 0.000000 0.000000 0.000000 0.000000 0.066667 0.066667 0.500000 0.000000 0.000000 0.133333 0.000000 0.000000 0.000000 0.033333 0.033333 0.000000 0.100000 0.033333 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.033333 0.000000 0.300000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVALVTGASSGIGKATAKALAKEGAKVVL MEME-1 regular expression -------------------------------------------------------------------------------- KV[AV][LI][VI]TG[AG][AGS]SG[IL]G[KLR][AE][TI][AV]KX[LF]A[AK][EA]GAKVV[LV] -------------------------------------------------------------------------------- Time 3.51 secs. ******************************************************************************** ******************************************************************************** MOTIF SAYSASKAAVEGLTRSLALELAPYGIRVN MEME-2 width = 29 sites = 31 llr = 1107 E-value = 2.9e-168 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTRSLALELAPYGIRVN MEME-2 Description -------------------------------------------------------------------------------- Simplified A 23:162:56112:1:215:::4::::::: pos.-specific C :::1::::::::::::::::::::::::: probability D ::::::::::1::::::::2::::::::: matrix E ::::::::::1:::21:::5::11::::: F :::::::31:::3:::::1:::::::::: G :1:2:::13::4:::1:1:::11:5:1:1 H :::::::::::1::1::::::::1::::: I :::::::::11:::::::::1::::5:1: K ::::::a:::1:::2:::1::121::1:: L :::::::::31:6:::5:215::1::::: M ::::1::::1:1:1::2:1:1:::::::: N :1:::::::::1::::::::::::2:1:4 P 11::::::::::::::::::::4:::::: Q ::::::::::::::1::11:::11::::: R ::::::::::1:::3::22::21:1:4:1 S 31:426::1:11:213:::::1:1::::2 T 2::1:2::::1::4:1::::::11::1:1 V 12:::::::41::2:1::1:1::::3161 W :::::::1::::::::::::::::::::: Y ::a:::::::::::::::::2::2::::: bits 6.7 6.0 5.4 4.7 * Relative 4.0 * * Entropy 3.4 * * (51.5 bits) 2.7 * ** * 2.0 * **** *** ** * ** * 1.3 * ******** **** ** ********** 0.7 ***************************** 0.0 ----------------------------- Multilevel SAYSASKAAVXGLTRSLAXELAPXGIRVN consensus A FGL FSE MR D V sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTRSLALELAPYGIRVN MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- YRTP_BACSU 153 6.53e-24 TAGQRGAAVT SAYSASKFAVLGLTESLMQEVRKHNIRVS ALTPSTVASD BUDC_KLETE 150 1.90e-22 QAGHVGNPEL AVYSSSKFAVRGLTQTAARDLAPLGITVN GFCPGIVKTP FIXR_BRAJA 187 4.54e-21 AGSRVHPFAG SAYATSKAALASLTRELAHDYAPHGIRVN AIAPGEIRTD NODG_RHIME 150 5.97e-21 VAGAIGNPGQ TNYCASKAGMIGFSKSLAQEIATRNITVN CVAPGFIESA AP27_MOUSE 147 1.74e-20 MVAHVTFPNL ITYSSTKGAMTMLTKAMAMELGPHKIRVN SVNPTVVLTD GUTD_ECOLI 152 1.51e-19 KSGKVGSKHN SGYSAAKFGGVGLTQSLALDLAEYGITVH SLMLGNLLKS DHGB_BACME 158 1.93e-19 HEWKIPWPLF VHYAASKGGMKLMTETLALEYAPKGIRVN NIGPGAINTP HMTR_LEIMA 191 3.97e-19 AMTNQPLLGY TIYTMAKGALEGLTRSAALELAPLQIRVN GVGPGLSVLV 2BHD_STREX 150 5.67e-19 AAGLMGLALT SSYGASKWGVRGLSKLAAVELGTDRIRVN SVHPGMTYTP HDHA_ECOLI 157 1.28e-18 MAAENKNINM TSYASSKAAASHLVRNMAFDLGEKNIRVN GIAPGAILTD FVT1_HUMAN 184 3.54e-18 QAGQLGLFGF TAYSASKFAIRGLAEALQMEVKPYNVYIT VAYPPDTDTP DHB2_HUMAN 230 3.54e-18 MGGGAPMERL ASYGSSKAAVTMFSSVMRLELSKWGIKVA SIQPGGFLTN DHMA_FLAS1 163 3.96e-18 VNSFMAEPEA AAYVAAKGGVAMLTRAMAVDLARHGILVN MIAPGPVDVT HDE_CANTR 465 7.66e-18 TSGIYGNFGQ ANYSSSKAGILGLSKTMAIEGAKNNIKVN IVAPHAETAM YURA_MYXXA 158 1.46e-17 SLAGFRGLPA TRYSASKAFLSTFMESLRVDLRGTGVRVT CIYPGFVKSE RIDH_KLEAE 158 3.39e-17 IAGVVPVIWE PVYTASKFAVQAFVHTTRRQVAQYGVRVG AVLPGPVVTA BDH_HUMAN 206 1.15e-16 MLGRMANPAR SPYCITKFGVEAFSDCLRYEMYPLGVKVS VVEPGNFIAA DHES_HUMAN 153 1.55e-16 VGGLMGLPFN DVYCASKFALEGLCESLAVLLLPFGVHLS LIECGPVHTA DHII_HUMAN 181 2.54e-16 LAGKVAYPMV AAYSASKFALDGFFSSIRKEYSVSRVNVS ITLCVLGLID BA72_EUBSP 155 9.68e-16 VTGIFGSLSG VGYPASKASVIGLTHGLGREIIRKNIRVV GVAPGVVNTD YINL_LISMO 152 2.03e-15 VAGLKAYPGG AVYGATKWAVRDLMEVLRMESAQEGTNIR TATIYPAAIN ENTA_ECOLI 142 3.19e-15 DAAHTPRIGM SAYGASKAALKSLALSVGLELAGSGVRCN VVSPGSTDTD 3BHD_COMTE 149 3.82e-15 VSSWLPIEQY AGYSASKAAVSALTRAAALSCRKQGYAIR VNSIHPDGIY RFBB_NEIGO 163 5.97e-15 FTETTPYAPS SPYSASKAAADHLVRAWQRTYRLPSIVSN CSNNYGPRQF DHB3_HUMAN 196 5.97e-15 GIALFPWPLY SMYSASKAFVCAFSKALQEEYKAKEVIIQ VLTPYAVSTA LIGD_PSEPA 155 6.52e-15 LGGFMGSALA GPYSAAKAASINLMEGYRQGLEKYGIGVS VCTPANIKSN BPHB_PSEPS 151 4.38e-13 NAGFYPNGGG PLYTAAKQAIVGLVRELAFELAPYVRVNG VGPGGMNSDM CSGA_MYXXA 86 1.01e-12 SLAANTDGGA YAYRMSKAALNMAVRSMSTDLRPEGFVTV LLHPGWVQTD FABI_ECOLI 157 1.98e-12 LGAERAIPNY NVMGLAKASLEANVRYMANAMGPEGVRVN AISAGPIRTL ADH_DROME 150 1.98e-12 VTGFNAIYQV PVYSGTKAAVVNFTSSLAKLAPITGVTAY TVNPGITRTT DHCA_HUMAN 191 7.76e-11 GVHQKEGWPS SAYGVTKIGVTVLSRIHARKLSEQRKGDK ILLNACCPGW -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTRSLALELAPYGIRVN MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YRTP_BACSU 6.5e-24 152_[2]_57 BUDC_KLETE 1.9e-22 149_[2]_63 FIXR_BRAJA 4.5e-21 186_[2]_63 NODG_RHIME 6e-21 149_[2]_67 AP27_MOUSE 1.7e-20 146_[2]_69 GUTD_ECOLI 1.5e-19 151_[2]_79 DHGB_BACME 1.9e-19 157_[2]_76 HMTR_LEIMA 4e-19 190_[2]_68 2BHD_STREX 5.7e-19 149_[2]_77 HDHA_ECOLI 1.3e-18 156_[2]_70 FVT1_HUMAN 3.5e-18 183_[2]_120 DHB2_HUMAN 3.5e-18 229_[2]_129 DHMA_FLAS1 4e-18 162_[2]_79 HDE_CANTR 7.7e-18 464_[2]_413 YURA_MYXXA 1.5e-17 157_[2]_72 RIDH_KLEAE 3.4e-17 157_[2]_63 BDH_HUMAN 1.2e-16 205_[2]_109 DHES_HUMAN 1.6e-16 152_[2]_146 DHII_HUMAN 2.5e-16 180_[2]_83 BA72_EUBSP 9.7e-16 154_[2]_66 YINL_LISMO 2e-15 151_[2]_68 ENTA_ECOLI 3.2e-15 141_[2]_78 3BHD_COMTE 3.8e-15 148_[2]_76 RFBB_NEIGO 6e-15 162_[2]_155 DHB3_HUMAN 6e-15 195_[2]_86 LIGD_PSEPA 6.5e-15 154_[2]_122 BPHB_PSEPS 4.4e-13 150_[2]_96 CSGA_MYXXA 1e-12 85_[2]_52 FABI_ECOLI 2e-12 156_[2]_77 ADH_DROME 2e-12 149_[2]_77 DHCA_HUMAN 7.8e-11 190_[2]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTRSLALELAPYGIRVN MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAYSASKAAVEGLTRSLALELAPYGIRVN width=29 seqs=31 YRTP_BACSU ( 153) SAYSASKFAVLGLTESLMQEVRKHNIRVS 1 BUDC_KLETE ( 150) AVYSSSKFAVRGLTQTAARDLAPLGITVN 1 FIXR_BRAJA ( 187) SAYATSKAALASLTRELAHDYAPHGIRVN 1 NODG_RHIME ( 150) TNYCASKAGMIGFSKSLAQEIATRNITVN 1 AP27_MOUSE ( 147) ITYSSTKGAMTMLTKAMAMELGPHKIRVN 1 GUTD_ECOLI ( 152) SGYSAAKFGGVGLTQSLALDLAEYGITVH 1 DHGB_BACME ( 158) VHYAASKGGMKLMTETLALEYAPKGIRVN 1 HMTR_LEIMA ( 191) TIYTMAKGALEGLTRSAALELAPLQIRVN 1 2BHD_STREX ( 150) SSYGASKWGVRGLSKLAAVELGTDRIRVN 1 HDHA_ECOLI ( 157) TSYASSKAAASHLVRNMAFDLGEKNIRVN 1 FVT1_HUMAN ( 184) TAYSASKFAIRGLAEALQMEVKPYNVYIT 1 DHB2_HUMAN ( 230) ASYGSSKAAVTMFSSVMRLELSKWGIKVA 1 DHMA_FLAS1 ( 163) AAYVAAKGGVAMLTRAMAVDLARHGILVN 1 HDE_CANTR ( 465) ANYSSSKAGILGLSKTMAIEGAKNNIKVN 1 YURA_MYXXA ( 158) TRYSASKAFLSTFMESLRVDLRGTGVRVT 1 RIDH_KLEAE ( 158) PVYTASKFAVQAFVHTTRRQVAQYGVRVG 1 BDH_HUMAN ( 206) SPYCITKFGVEAFSDCLRYEMYPLGVKVS 1 DHES_HUMAN ( 153) DVYCASKFALEGLCESLAVLLLPFGVHLS 1 DHII_HUMAN ( 181) AAYSASKFALDGFFSSIRKEYSVSRVNVS 1 BA72_EUBSP ( 155) VGYPASKASVIGLTHGLGREIIRKNIRVV 1 YINL_LISMO ( 152) AVYGATKWAVRDLMEVLRMESAQEGTNIR 1 ENTA_ECOLI ( 142) SAYGASKAALKSLALSVGLELAGSGVRCN 1 3BHD_COMTE ( 149) AGYSASKAAVSALTRAAALSCRKQGYAIR 1 RFBB_NEIGO ( 163) SPYSASKAAADHLVRAWQRTYRLPSIVSN 1 DHB3_HUMAN ( 196) SMYSASKAFVCAFSKALQEEYKAKEVIIQ 1 LIGD_PSEPA ( 155) GPYSAAKAASINLMEGYRQGLEKYGIGVS 1 BPHB_PSEPS ( 151) PLYTAAKQAIVGLVRELAFELAPYVRVNG 1 CSGA_MYXXA ( 86) YAYRMSKAALNMAVRSMSTDLRPEGFVTV 1 FABI_ECOLI ( 157) NVMGLAKASLEANVRYMANAMGPEGVRVN 1 ADH_DROME ( 150) PVYSGTKAAVVNFTSSLAKLAPITGVTAY 1 DHCA_HUMAN ( 191) SAYGVTKIGVTVLSRIHARKLSEQRKGDK 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTRSLALELAPYGIRVN MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 9072 bayes= 8.11521 E= 2.9e-168 82 -267 -51 -166 -316 -147 -170 -77 -147 -304 -247 -16 100 -117 -205 204 136 -44 -313 12 106 -217 -312 -241 -257 -8 74 -47 -220 -106 30 56 104 -183 -52 52 -55 109 -282 -259 -735 -508 -715 -725 -189 -735 -324 -566 -670 -508 22 -574 -668 -545 -619 -626 -645 -620 -234 512 -12 287 -539 -525 -527 100 -469 -528 -499 -549 -480 -414 -40 -435 -69 273 80 -136 -513 -524 261 -60 -386 -339 -316 -156 -322 -140 -339 -189 30 -344 -432 -309 -345 71 -113 -119 -305 -354 74 -256 -555 -578 -543 -416 -494 -568 -537 -583 -505 -406 -453 -469 -517 331 147 -495 -522 -540 -572 -446 -600 -565 -643 -626 -470 -557 423 -622 -560 -486 -552 -478 -203 -565 -529 -649 -497 -576 204 -240 -536 -479 272 41 -340 -59 -449 -310 -275 -426 -459 7 -446 -310 -315 -287 261 -219 244 -260 -617 -607 76 146 -544 -586 -620 -599 -528 -507 -484 -506 -581 13 -360 -465 -556 -597 -72 -187 -492 -414 -225 -153 -299 86 -381 139 173 -370 -403 -317 -377 -87 -243 220 -266 -256 -68 114 34 117 -347 -350 -143 53 53 -62 -272 -7 -288 51 124 58 68 2 -324 -271 40 -276 -47 -161 -314 184 166 -284 -143 -130 199 63 -308 -113 -201 9 -54 -118 -311 -270 -199 -336 -604 -519 249 -629 -422 -198 -495 285 35 -68 -491 -386 -464 -490 -415 -298 -347 -363 -82 123 -470 -437 -23 -472 -328 -211 -385 -272 161 -319 -417 -322 -388 163 270 104 -315 -316 -294 -341 -45 189 -384 -381 168 -382 159 -145 -302 -194 -320 119 250 56 -234 -376 -351 -303 65 125 -331 15 -254 -64 -231 -46 -239 -106 -192 -31 -353 -201 -279 218 108 -23 -280 18 10 -189 -490 -411 -219 -458 66 -27 -379 220 284 -370 -399 -311 -372 -312 -62 -73 155 20 227 -245 -435 -371 -483 -54 -343 -468 -259 -471 12 -364 -445 158 203 -69 -323 -393 -450 -456 -276 -250 -256 -41 67 -380 78 -62 41 90 163 -19 -320 161 152 -214 -54 51 -297 17 -155 -448 205 312 -480 -150 -254 -458 -38 -63 -382 -264 -367 39 -291 -81 -72 -440 -453 -396 -150 129 -489 -411 -219 -157 -297 37 -378 228 119 -370 -399 -311 -372 -91 -245 31 -263 234 158 -294 -205 -23 -345 28 -147 -90 51 -142 -270 -168 -40 -88 151 57 -204 -335 -323 12 -135 -311 -204 83 -349 -62 -146 -90 154 -143 -274 -167 285 118 40 -181 19 -133 -326 -275 -261 -309 -40 83 -29 -351 257 -352 127 -11 -272 -8 -39 119 -30 12 20 -344 147 230 -348 -374 -257 -61 -453 255 -223 -454 -30 -444 -379 200 -382 21 83 -82 -303 -151 -397 -366 -366 -246 -411 -397 -111 -492 -359 345 -183 -76 -102 -352 -425 -334 -188 -338 -159 126 -308 -95 -137 -283 -223 -153 -321 -61 80 -77 92 -132 -250 64 -303 -104 271 -194 105 8 -313 15 -143 25 -191 -327 -282 -441 -262 61 -335 -174 -225 -166 -317 -307 -309 -195 -110 311 -341 -386 -135 -312 -200 -131 -349 -61 82 -353 -7 -340 -273 309 -289 51 41 120 20 -50 -325 13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTRSLALELAPYGIRVN MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 31 E= 2.9e-168 0.225806 0.000000 0.032258 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.096774 0.000000 0.000000 0.290323 0.161290 0.064516 0.000000 0.032258 0.258065 0.000000 0.000000 0.000000 0.000000 0.096774 0.032258 0.032258 0.000000 0.032258 0.032258 0.064516 0.096774 0.000000 0.032258 0.096774 0.032258 0.193548 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.967742 0.096774 0.096774 0.000000 0.000000 0.000000 0.193548 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.419355 0.096774 0.032258 0.000000 0.000000 0.612903 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.032258 0.064516 0.000000 0.000000 0.000000 0.000000 0.161290 0.032258 0.032258 0.000000 0.000000 0.193548 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.645161 0.161290 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.483871 0.000000 0.000000 0.000000 0.258065 0.129032 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.612903 0.000000 0.000000 0.000000 0.064516 0.258065 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.096774 0.000000 0.258065 0.096774 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.419355 0.000000 0.000000 0.064516 0.032258 0.064516 0.129032 0.000000 0.000000 0.000000 0.096774 0.064516 0.064516 0.000000 0.032258 0.000000 0.032258 0.129032 0.096774 0.096774 0.096774 0.000000 0.000000 0.161290 0.000000 0.032258 0.000000 0.000000 0.387097 0.064516 0.000000 0.000000 0.032258 0.129032 0.064516 0.000000 0.000000 0.000000 0.064516 0.032258 0.032258 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.258065 0.000000 0.000000 0.000000 0.000000 0.645161 0.032258 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.032258 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.096774 0.000000 0.000000 0.000000 0.000000 0.225806 0.354839 0.193548 0.000000 0.000000 0.000000 0.000000 0.032258 0.225806 0.000000 0.000000 0.064516 0.000000 0.161290 0.032258 0.000000 0.000000 0.000000 0.064516 0.322581 0.096774 0.000000 0.000000 0.000000 0.000000 0.193548 0.032258 0.000000 0.064516 0.000000 0.064516 0.000000 0.032258 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.322581 0.129032 0.064516 0.000000 0.032258 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.451613 0.225806 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.032258 0.032258 0.032258 0.548387 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.096774 0.225806 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.064516 0.000000 0.032258 0.032258 0.064516 0.193548 0.096774 0.032258 0.000000 0.096774 0.161290 0.000000 0.032258 0.129032 0.000000 0.032258 0.032258 0.000000 0.225806 0.516129 0.000000 0.032258 0.000000 0.000000 0.032258 0.064516 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.032258 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.064516 0.000000 0.483871 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.096774 0.000000 0.161290 0.387097 0.000000 0.000000 0.032258 0.000000 0.129032 0.000000 0.032258 0.064516 0.032258 0.000000 0.000000 0.032258 0.000000 0.161290 0.096774 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.000000 0.096774 0.000000 0.064516 0.000000 0.032258 0.161290 0.032258 0.000000 0.000000 0.354839 0.064516 0.064516 0.000000 0.064516 0.032258 0.000000 0.000000 0.000000 0.000000 0.032258 0.096774 0.032258 0.000000 0.129032 0.000000 0.129032 0.096774 0.000000 0.032258 0.032258 0.064516 0.032258 0.064516 0.064516 0.000000 0.032258 0.161290 0.000000 0.000000 0.000000 0.032258 0.000000 0.548387 0.000000 0.000000 0.032258 0.000000 0.000000 0.193548 0.000000 0.032258 0.096774 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.516129 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.322581 0.000000 0.032258 0.032258 0.000000 0.000000 0.000000 0.000000 0.064516 0.032258 0.032258 0.096774 0.032258 0.000000 0.064516 0.000000 0.000000 0.387097 0.000000 0.129032 0.096774 0.000000 0.032258 0.032258 0.032258 0.032258 0.000000 0.000000 0.000000 0.000000 0.129032 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.032258 0.645161 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.064516 0.032258 0.000000 0.032258 0.000000 0.000000 0.419355 0.000000 0.032258 0.064516 0.161290 0.064516 0.064516 0.000000 0.032258 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAYSASKAAVEGLTRSLALELAPYGIRVN MEME-2 regular expression -------------------------------------------------------------------------------- [SA]AYSASK[AF][AG][VL]XG[LF][TS][RE]S[LM][AR]X[ED]LAPXG[IV]RVN -------------------------------------------------------------------------------- Time 6.82 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2BHD_STREX 1.26e-28 6_[1(6.20e-17)]_114_[2(5.67e-19)]_\ 77 3BHD_COMTE 7.17e-26 6_[1(5.87e-18)]_113_[2(3.82e-15)]_\ 76 ADH_DROME 2.39e-16 6_[1(5.77e-11)]_114_[2(1.98e-12)]_\ 77 AP27_MOUSE 4.39e-32 7_[1(6.97e-19)]_110_[2(1.74e-20)]_\ 69 BA72_EUBSP 1.79e-26 6_[1(5.87e-18)]_119_[2(9.68e-16)]_\ 66 BDH_HUMAN 7.84e-27 55_[1(1.05e-17)]_121_[2(1.15e-16)]_\ 109 BPHB_PSEPS 4.88e-20 5_[1(3.70e-14)]_116_[2(4.38e-13)]_\ 96 BUDC_KLETE 2.57e-35 2_[1(3.50e-20)]_118_[2(1.90e-22)]_\ 63 DHES_HUMAN 2.35e-23 2_[1(2.96e-14)]_121_[2(1.55e-16)]_\ 146 DHGB_BACME 1.25e-30 7_[1(1.60e-18)]_121_[2(1.93e-19)]_\ 76 DHII_HUMAN 3.16e-31 34_[1(2.37e-22)]_117_[2(2.54e-16)]_\ 83 DHMA_FLAS1 3.93e-29 14_[1(2.40e-18)]_119_[2(3.96e-18)]_\ 79 ENTA_ECOLI 1.98e-27 5_[1(1.92e-19)]_107_[2(3.19e-15)]_\ 78 FIXR_BRAJA 6.92e-31 36_[1(3.26e-17)]_121_[2(4.54e-21)]_\ 63 GUTD_ECOLI 6.06e-26 2_[1(1.19e-13)]_120_[2(1.51e-19)]_\ 79 HDE_CANTR 1.89e-32 8_[1(1.60e-18)]_123_[2(1.71e-13)]_\ 133_[1(4.08e-23)]_113_[2(7.66e-18)]_413 HDHA_ECOLI 1.57e-31 11_[1(3.11e-20)]_116_[2(1.28e-18)]_\ 70 LIGD_PSEPA 2.05e-23 6_[1(7.14e-16)]_119_[2(6.52e-15)]_\ 122 NODG_RHIME 2.17e-29 6_[1(1.08e-15)]_114_[2(5.97e-21)]_\ 67 RIDH_KLEAE 5.96e-30 14_[1(4.96e-20)]_114_[2(3.39e-17)]_\ 63 YINL_LISMO 5.83e-30 5_[1(8.18e-22)]_117_[2(2.03e-15)]_\ 68 YRTP_BACSU 1.55e-35 6_[1(6.27e-19)]_117_[2(6.53e-24)]_\ 57 CSGA_MYXXA 9.59e-10 85_[2(1.01e-12)]_52 DHB2_HUMAN 1.58e-27 82_[1(5.17e-17)]_118_[2(3.54e-18)]_\ 129 DHB3_HUMAN 1.30e-25 48_[1(4.37e-18)]_118_[2(5.97e-15)]_\ 86 DHCA_HUMAN 8.14e-19 4_[1(3.67e-15)]_157_[2(7.76e-11)]_\ 57 FABI_ECOLI 4.58e-10 156_[2(1.98e-12)]_77 FVT1_HUMAN 1.04e-27 32_[1(4.71e-17)]_122_[2(3.54e-18)]_\ 120 HMTR_LEIMA 1.05e-28 6_[1(5.66e-17)]_155_[2(3.97e-19)]_\ 68 MAS1_AGRRA 1.71e-12 245_[1(7.47e-15)]_115_[2(3.64e-05)]_\ 58 PCR_PEA 2.11e-14 86_[1(1.40e-17)]_284 RFBB_NEIGO 1.21e-20 6_[1(3.94e-13)]_127_[2(5.97e-15)]_\ 155 YURA_MYXXA 9.94e-15 157_[2(1.46e-17)]_72 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (2) found. ******************************************************************************** CPU: Timothys-iMac.rd.unr.edu ********************************************************************************