nanopolish¶
nanopolish is a software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more (see Nanopolish modules, below).
Publications¶
Loman, Nicholas J., Joshua Quick, and Jared T. Simpson. "A complete bacterial genome assembled de novo using only nanopore sequencing data." Nature methods 12.8 (2015): 733-735.
Quick, Joshua, et al. "Real-time, portable genome sequencing for Ebola surveillance." Nature 530.7589 (2016): 228-232.
Simpson, Jared T., et al. "Detecting DNA cytosine methylation using nanopore sequencing." nature methods 14.4 (2017): 407-410.