Package: gensoft-3seq-1.7 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 787 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-3seq-1.7_1.0_amd64.deb Size: 428764 MD5sum: 4de6018448f8edf5fbfcf8de135eddb8 SHA1: c82ec969c5da7c3d5367c228e4e3f12033c95fb5 SHA256: efd3edcb06c06dab4d12ef2dec0ae4327ef7c8b2348167e605e2da28593920c6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a command-line program that reads in a nucleotide sequence file, in phylip or aligned fasta format, and tests all sequence triplets in the file for a mosaic recombination signal indicating that one of the three sequences (the child) is a recombinant of the other two (the parents). License: unknown Vendor: Institut Pasteur Package: gensoft-abpoa-1.2.5 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 696 Depends: gensoft-graphviz-2.42.3, zlib1g, libc6 Filename: pool/main/gensoft-abpoa-1.2.5_1.0_amd64.deb Size: 206778 MD5sum: 9e48a1b4a65be12db2fcd8ea91521638 SHA1: c3abab276fee4af31a3300c70d51f57c640a5370 SHA256: a17848678d7042f7a6d9d33d220b9d650ef39c7150cb495ab7af733b732e40df Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph. License: unknown Vendor: Institut Pasteur Package: gensoft-abpoa-1.3.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 6735 Depends: zlib1g, libc6, gensoft-graphviz-2.42.3 Filename: pool/main/gensoft-abpoa-1.3.0_1.0_amd64.deb Size: 739888 MD5sum: ed96ca6d6d04b584e0f816d53f617965 SHA1: 0153663a69d12e37bbc0243c9ab61876a9ed0a15 SHA256: fa81bf70b9bec6a2b04040b43d229fc2ca523d357e85777ecfa325a058f29007 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph. License: unknown Vendor: Institut Pasteur Package: gensoft-abricate-0.9.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 49185 Depends: gensoft-any2fasta-0.4.2, gensoft-adm-perl-5.30.1, gensoft-xz-5.2.4, gensoft-expat-2.2.9, gensoft-libiconv-1.16, libc6, gensoft-blast+-2.10.0, gensoft-libxml2-2.9.10 Filename: pool/main/gensoft-abricate-0.9.9_1.0_amd64.deb Size: 11676626 MD5sum: e69d006ff79200f9732f0a0da17f334f SHA1: 4fcef0634d2f0645b68593f5e6c9b721c192c90a SHA256: be60c6b57f51ff01459ade34d14738b7b49adc2494ce1605f262cbec29f84e99 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Mass screening of contigs for antimicrobial resistance or virulence genes. It comes bundled with multiple databases - Resfinder, CARD, ARG-ANNOT, NCBI BARRGD, NCBI, EcOH, PlasmidFinder and VFDB License: unknown Vendor: Institut Pasteur Package: gensoft-abricate-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 59041 Depends: gensoft-any2fasta-0.4.2, gensoft-adm-perl-5.30.1, gensoft-libiconv-1.16, gensoft-libxml2-2.9.10, gensoft-xz-5.2.4, libc6, gensoft-blast+-2.10.0, gensoft-expat-2.2.9 Filename: pool/main/gensoft-abricate-1.0.1_1.0_amd64.deb Size: 13112824 MD5sum: c6d595235000e75ac176f8eaefeb7461 SHA1: 9ebd98e6d9c0467d7a1f51944f47613eb47d6243 SHA256: 4043e00494fc86c7258d75782aabfcd1d65e0caf3f7300217a76d13d7c33332b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Mass screening of contigs for antimicrobial resistance or virulence genes. It comes bundled with multiple databases - Resfinder, CARD, ARG-ANNOT, NCBI BARRGD, NCBI, EcOH, PlasmidFinder and VFDB License: unknown Vendor: Institut Pasteur Package: gensoft-abseil-cpp-20200923.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 10001 Filename: pool/main/gensoft-abseil-cpp-20200923.2_1.0_amd64.deb Size: 1874682 MD5sum: 516b46312861b821ce8b406553185cd6 SHA1: 28408356cd8e359092b53418796be38128433719 SHA256: 2ebc836a57d22c719531b2fc3732eec97dd4ae69ae291d6b1c1ed44393f5ed87 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Abseil is an open-source collection of C++ code (compliant to C++17) designed to augment the C++ standard library. License: unknown Vendor: Institut Pasteur Package: gensoft-abundancebin-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 57 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-abundancebin-1.0.1_1.0_amd64.deb Size: 20482 MD5sum: 8b21c599ff0e11c0be4e0bbea5b46174 SHA1: 657e2d90773a0e6a49e71fbb59fd4108afad4a76 SHA256: 9572b8ea226f065cbff7a922f63c2f2d2baae2ff9497fa872f37167244f71e6a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: AbundanceBin is an abundance-based tool for binning metagenomic sequences, such that the reads classified in a bin belong to species of identical or very similar abundances. AbundanceBin also gives estimations of species abundances and their genome sizes, two important characteristic parameters for a microbial community. License: unknown Vendor: Institut Pasteur Package: gensoft-abyss-2.2.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 144988 Depends: zlib1g, gensoft-adm-perl-5.30.1, libc6, bsdmainutils, make, gensoft-gcc-9.2.0, gensoft-openmpi-4.0.5, awk Filename: pool/main/gensoft-abyss-2.2.4_1.0_amd64.deb Size: 39602068 MD5sum: 740efaa7d01d0af4ee53936579996102 SHA1: 028bf62f73c4169289626358110bb4eb55e38778 SHA256: 50d205623eb0558a1bf0e2450a6d91ba9f769d2f1d7249a55ed50073469d4cbd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: De novo, parallel, paired-end sequence assembler that is designed for short reads License: unknown Vendor: Institut Pasteur Package: gensoft-abyss-2.2.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 144925 Depends: libc6, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0, zlib1g, gensoft-openmpi-4.0.5, bsdmainutils, awk, make Filename: pool/main/gensoft-abyss-2.2.5_1.0_amd64.deb Size: 39587154 MD5sum: d41d5688babf106158e5bd7b90201b48 SHA1: 7e2218d4c7d995eeca0831ebf4a476dacbb8097b SHA256: 093803a57510fc85cfe1103f4eac073c3110e2ed5f9b153ae1ed89076a1d2d03 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: De novo, parallel, paired-end sequence assembler that is designed for short reads License: unknown Vendor: Institut Pasteur Package: gensoft-adapterremoval-2.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2493 Depends: libbz2-1.0, libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-adapterremoval-2.3.1_1.0_amd64.deb Size: 849804 MD5sum: 35a2e04058b2143de71353a1c8deef29 SHA1: 06d7bc1b5f4e040c31f74dd3d6edc989bb891932 SHA256: cba0eb2ce41d5441781a99a66950426482e0082903939a8365fb225dd5340eab Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: AdapterRemoval searches for and removes adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3 prime end of reads following adapter removal. AdapterRemoval can analyze both single end and paired end data, and can be used to merge overlapping paired-ended reads into (longer) consensus sequences. Additionally, AdapterRemoval can construct a consensus adapter sequence for paired-ended reads, if which this information is not available License: unknown Vendor: Institut Pasteur Package: gensoft-adm-apptainer-1.3.6 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 102165 Depends: squashfs-tools, libc6, gensoft-xz-5.2.5, gensoft-lzo-2.10, gensoft-lz4-1.9.2, e2fsprogs, libuuid1, libfuse3-3, fuse-overlayfs, fuse2fs, libblkid1, libseccomp2, zlib1g, fakeroot, gensoft-zstd-1.4.4 Filename: pool/main/gensoft-adm-apptainer-1.3.6_2.0_amd64.deb Size: 48109150 MD5sum: c03c4d7da91abb118826b67d0e78e600 SHA1: f5d0237ec5214c43af6bb0f676003cf2f92713f2 SHA256: 8e308414702d0220ae25790af8804cac32f1ba99f18da756cb016c4c319f6b20 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-adm-perl-5.30.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 71776 Depends: gensoft-db-18.1.32, zlib1g, libc6 Filename: pool/main/gensoft-adm-perl-5.30.1_1.0_amd64.deb Size: 18688530 MD5sum: 7f2e6e5c31e6f3251135cc3bdd17f912 SHA1: da51b39cac874c1b70dda0822e98c43357e46a70 SHA256: f8d64bf29f3daadd00d5210d411884774cba22a9b0daf595a2c992e3d179ae89 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Perl 5 is a highly capable, feature-rich programming language with over 27 years of development License: unknown Vendor: Institut Pasteur Package: gensoft-adm-python-2.7.17 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 133218 Depends: libc6, libreadline8, gensoft-xorg-libs-1.1, gensoft-tk-8.6.10, libbz2-1.0, libssl1.1, libtinfo5, gensoft-sqlite-3.31.0, gensoft-tcl-8.6.10, gensoft-gdbm-1.18.1, gensoft-gcc-9.2.0, zlib1g, libncurses5 Filename: pool/main/gensoft-adm-python-2.7.17_1.0_amd64.deb Size: 40627484 MD5sum: a4bed03eaef619763ded4e00e283b68d SHA1: c5fe93350b2ced822371b3368fe544a56893d5d8 SHA256: e1bf341266d7c4e61e8550fe2d231496a44a54209cd03d0ab12243ff743e5f0b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Python is a programming language that lets you work quickly and integrate systems more effectively. 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License: unknown Vendor: Institut Pasteur Package: gensoft-admixtools-6.0 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12112 Depends: gensoft-openblas-0.3.7, gensoft-adm-perl-5.30.1, gensoft-gsl-2.6, libc6, gensoft-gcc-9.2.0, gensoft-r-3.6.2 Filename: pool/main/gensoft-admixtools-6.0_3.0_amd64.deb Size: 5544454 MD5sum: 5e75b392805cfda73e4aa8b842d4b420 SHA1: df560a3aeec795062678672bca9cc9d35a8a55eb SHA256: 054009e2cea2715c96853a33778ebe827b8cc6bb4c6a36c97296236814b6cbe4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a software package that supports formal tests of whether admixture occurred, and makes it possible to infer admixture proportions and dates. License: unknown Vendor: Institut Pasteur Package: gensoft-admixtools-7.0.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 18977 Depends: gensoft-gcc-9.2.0, gensoft-openblas-0.3.7, libc6, gensoft-r-4.3.0, gensoft-adm-perl-5.30.1, gensoft-gsl-2.6 Filename: pool/main/gensoft-admixtools-7.0.2_1.0_amd64.deb Size: 8730152 MD5sum: 449b23449c43614dd751e6322c98e448 SHA1: c2d87c7e04ca36d9d82b0d0d384752df6d35ff07 SHA256: d2f7bc2dd635dc81d4d4b2fb1087b6b2501a828ae8213ab45d1cee19a5abae72 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a software package that supports formal tests of whether admixture occurred, and makes it possible to infer admixture proportions and dates. License: unknown Vendor: Institut Pasteur Package: gensoft-afni-21.1.08 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2606955 Depends: gensoft-motif-2.3.8, gensoft-gcc-9.2.0, gensoft-libxml2-2.9.10, gensoft-fontconfig-2.13.91, libbz2-1.0, gensoft-xz-5.2.4, libgcc-s1, gensoft-curl-7.68.0, gensoft-gsl-2.6, gensoft-glib-2.58.3, libssl1.1, gensoft-mesa-19.0.8, gensoft-libiconv-1.16, libc6, gensoft-libjpeg-turbo-2.0.4, zlib1g, gensoft-glu-9.0.1, gensoft-r-4.0.2, gensoft-xorg-libs-1.1, gensoft-freetype-2.10.1, gensoft-adm-perl-5.30.1, tcsh, gensoft-expat-2.2.9, gensoft-libpng-1.6.37, libstdc++6, gensoft-libdrm-2.4.100, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-afni-21.1.08_1.0_amd64.deb Size: 1024800438 MD5sum: dfdbc2db9c8cc193e37a0173f6cb5614 SHA1: 2f3b5ef06cd6cee975310213559c2d02c4ac10db SHA256: abd7be1504fa32eca2439fcda56ff663711ef867bdadc48f88b6a77c126b7669 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: AFNI (Analysis of Functional NeuroImages) is a leading software suite of C, Python, R programs and shell scripts primarily developed for the analysis and display of multiple MRI modalities - anatomical, functional MRI (FMRI) and diffusion weighted (DW) data. License: unknown Vendor: Institut Pasteur Package: gensoft-alder-1.03 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 362 Depends: gensoft-lapack-3.9.0, gensoft-gcc-9.2.0, libc6, gensoft-blas-3.8.0, gensoft-fftw-3.3.8 Filename: pool/main/gensoft-alder-1.03_1.0_amd64.deb Size: 168352 MD5sum: 848d48fcbf5a9c3357bdac10c86c18a0 SHA1: 6f4cf5ec497ced15db459d1cd91bac0f8d1ef2ec SHA256: 9246031267abca541b01fd792a78a2526594a1ec069969e344c60bfb5cf64c46 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ALDER computes weighted LD decay curves, performs curve-fitting to infer admixture dates, and uses the results to test for admixture. License: unknown Vendor: Institut Pasteur Package: gensoft-ale-1.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 876285 Depends: gensoft-gcc-9.2.0 Filename: pool/main/gensoft-ale-1.0_2.0_amd64.deb Size: 232710830 MD5sum: 3e40e1ce4841ee312702a075adbe6ba1 SHA1: ca01d804e55500f3ee8ceea30a07896532e9706c SHA256: 14ba0b5b842a4f57a256fd355b1374bf48755d4a628f12eb749b629ff1d73256 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. License: unknown Vendor: Institut Pasteur Package: gensoft-alerax-1.2.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 96953 Depends: gensoft-gsl-2.6, zlib1g, gensoft-gcc-9.2.0, libc6, gensoft-openmpi-4.0.5 Filename: pool/main/gensoft-alerax-1.2.0_1.0_amd64.deb Size: 27202782 MD5sum: 7f996ef1c2003f397554700ae3d4bc27 SHA1: 26f35de5c8de16c12521bb1dcd2599ddad331b62 SHA256: 7259ae049835de221f2171a2240f8ed6fc2189ae23465d34ae511328b6538aad Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Species tree - gene tree inference and reconciliation under gene duplication, loss, and HGT. License: unknown Vendor: Institut Pasteur Package: gensoft-aliendiscover-0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1060623 Depends: gensoft-graalvm-ce-java19-22.3.1 Filename: pool/main/gensoft-aliendiscover-0.1_1.0_amd64.deb Size: 4951630 MD5sum: 42fa7883ef824e3ffd487b6fcefced30 SHA1: 16aa3411cddd286e45d87b30d4e52995a7d0768d SHA256: 929b4348186a37a1a01c990fba612029beccb658f0acb094621bf1c0c9bdf534 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a command line program written in Java that quickly removes alien (i.e. undesirable) high-throughtput sequencing (HTS) reads from FASTQ files. License: unknown Vendor: Institut Pasteur Package: gensoft-aliendiscover-0.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 13770 Depends: gensoft-graalvm-ce-java19-22.3.1, zlib1g, libc6 Filename: pool/main/gensoft-aliendiscover-0.2_1.0_amd64.deb Size: 4916082 MD5sum: b3bf10e6d5d1478aca638595592f3585 SHA1: 8a2103ed7de9e35437b47bf8b79ccc32dca1c2cb SHA256: fdcef15c8f268bb8d14a3b15e54e0ffc0da071e1b8af526796a55b4ba640205e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a command line program written in Java that quickly removes alien (i.e. undesirable) high-throughtput sequencing (HTS) reads from FASTQ files. License: unknown Vendor: Institut Pasteur Package: gensoft-alienremover-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 16 Depends: gensoft-java-13.0.2 Filename: pool/main/gensoft-alienremover-1.0_1.0_amd64.deb Size: 17578 MD5sum: 06ab50b2394ad64e282c6ebcb49bb0b4 SHA1: ac7b12ca6ebc5d1903ed73143589e8b5db72acc4 SHA256: 126d488b7a0bdc8be08dd8bbef532d7312600b0b4b6a8aa56635e456026c4166 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a command line program written in Java that quickly removes alien (i.e. undesirable) high-throughtput sequencing (HTS) reads from FASTQ files. License: unknown Vendor: Institut Pasteur Package: gensoft-alientrimmer-0.4.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6984 Depends: gensoft-graalvm-ce-java11-20.0.0, libc6 Filename: pool/main/gensoft-alientrimmer-0.4.0_2.0_amd64.deb Size: 2678832 MD5sum: 42a5c30fbfda4300a11f3415482b0ae1 SHA1: def7e2a5acf5f12f5ab78eb90452894fa43d7383 SHA256: cf3c225629ef39dc036896c7708062669bcc968948d4b1e4bb36a0e99368f791 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: AlienTrimmer is a software that allows detecting and removing contaminant sequences in both ends of NGSread sequences FASTA/FASTQ formated. License: unknown Vendor: Institut Pasteur Package: gensoft-alientrimmer-2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7122 Depends: libc6, gensoft-graalvm-ce-java11-20.0.0 Filename: pool/main/gensoft-alientrimmer-2.0_1.0_amd64.deb Size: 2659668 MD5sum: d62751b991fca650a80ae8c015c48dbe SHA1: de751334a76991b5ab98535f4e74adc79c567e30 SHA256: 6c3ca0eda9a81f6ab4159bff1d8dfcdf529ca6fb2c9b8e76c39750c5a1487ed2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: AlienTrimmer is a software that allows detecting and removing contaminant sequences in both ends of NGSread sequences FASTA/FASTQ formated. License: unknown Vendor: Institut Pasteur Package: gensoft-alientrimmer-2.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12140 Depends: gensoft-graalvm-ce-java19-22.3.1, libc6 Filename: pool/main/gensoft-alientrimmer-2.1_1.0_amd64.deb Size: 3946750 MD5sum: 7d6b6efc0143f4aa0dd9190241090bed SHA1: c4c298f63d39bb5f50a5e1b3767c626c49aa74ae SHA256: 3a8fe5ba1776b30bd8966583c7b682291b9a309983b77fc48b0910839f8fb042 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: AlienTrimmer is a software that allows detecting and removing contaminant sequences in both ends of NGSread sequences FASTA/FASTQ formated. License: unknown Vendor: Institut Pasteur Package: gensoft-alientrimmer-3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12167 Depends: libc6, zlib1g Filename: pool/main/gensoft-alientrimmer-3.0_1.0_amd64.deb Size: 3954244 MD5sum: a82c4bb480514c8610721496706fe4fd SHA1: 3eaac0ab25cdfca13c039840607b3454959afcc0 SHA256: 9cc271754f344e4ed9a1d5b233933965ccd37c325b249614180a6335feae82d0 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: AlienTrimmer is a software that allows detecting and removing contaminant sequences in both ends of NGSread sequences FASTA/FASTQ formated. License: unknown Vendor: Institut Pasteur Package: gensoft-alientrimmer-3.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 13814 Depends: libc6, zlib1g Filename: pool/main/gensoft-alientrimmer-3.1_1.0_amd64.deb Size: 4942112 MD5sum: 5bcc33387ddd1a781ab34ebf6a6dffd5 SHA1: a7c08cafd871fad74baeb702f2ce35cb26d9bf09 SHA256: 8c507705f624481c201ebb9200466a22b36fad9dfcac8aff149876e1a23ef9a8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: AlienTrimmer is a software that allows detecting and removing contaminant sequences in both ends of NGSread sequences FASTA/FASTQ formated. License: unknown Vendor: Institut Pasteur Package: gensoft-align-reorder-1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-align-reorder-1.2_1.0_amd64.deb Size: 3176 MD5sum: fde7130375d836ceeba7a95d0e7eeda7 SHA1: 432aeaf40f0608f1f786bedfcc1fc18f2e4c55fe SHA256: 2b3220dcf1514ef8822e7ccbfba3a58b0700026f9a697e200f8c442326c42c43 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: reorder entries an alignement (in fasta format) according a ref sequences file (in fasta format) License: unknown Vendor: Institut Pasteur Package: gensoft-alohomora-v0.36 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 160510 Depends: gensoft-merlin-1.1.2, gensoft-fontconfig-2.13.91, libc6, gensoft-xorg-libs-1.1, gensoft-freetype-2.10.1, gensoft-genehunter-2.1-r2, libbz2-1.0, zlib1g, gensoft-pedcheck-1.1, gensoft-simwalk2-2.91, gensoft-plink-1.90b6.16, gensoft-gnuplot-5.2.8, gensoft-pedstats-0.6.12, gensoft-adm-perl-5.30.1, gensoft-libpng-1.6.37, gensoft-expat-2.2.9 Filename: pool/main/gensoft-alohomora-v0.36_1.0_amd64.deb Size: 52819530 MD5sum: 3e17717fc3ca503cae85a958df379d9a SHA1: 71ffe36f4cdb6e72a5b86911f94e9b39376af8ac SHA256: c337287d4ac0ae9f4629f68369a1cb294aa470140c3c8795d4296d0355813866 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: designed to facilitate genome-wide linkage studies performed with high-density single nucleotide polymorphism (SNP) marker panels such as the Affymetrix GeneChip Human Mapping 10K Array License: unknown Vendor: Institut Pasteur Package: gensoft-alphafold-2.0.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 5462315 Depends: gensoft-singularity-3.8.3 Filename: pool/main/gensoft-alphafold-2.0.1_1.0_amd64.deb Size: 5568617978 MD5sum: 7eb8251d0acbef140f558567b6c2bc81 SHA1: 82182fab8a9f7f558fbe08bb431f962be287dbe7 SHA256: aa3cb41b716520392fcc6059062740bfa021d34d9d25698565d5029c17e6817f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: implementation of the inference pipeline of AlphaFold 2.0. License: unknown Vendor: Institut Pasteur Package: gensoft-alphafold-2.2.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5883368 Depends: gensoft-apptainer-1.0.0 Filename: pool/main/gensoft-alphafold-2.2.0_1.0_amd64.deb Size: 6010154220 MD5sum: 13be23801ccd020353b0dc2913790536 SHA1: effc40cdbf49db8e30ad4a0eef7037ad734adb43 SHA256: 0283e1fb41dd734f5d80ca073920209aa68e5d4976d4a362ec0a1ce0646ff52c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: implementation of the inference pipeline of AlphaFold 2.0. License: unknown Vendor: Institut Pasteur Package: gensoft-alphafold-2.3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5535752 Depends: gensoft-apptainer-1.1.3 Filename: pool/main/gensoft-alphafold-2.3.0_1.0_amd64.deb Size: 5654583910 MD5sum: a9fd225fdba7ac6999d0c7893cb66f2f SHA1: a50a07b7cb556ab1295738f7961376009e9db3f3 SHA256: 62d1f1afac11bb073d788a38d827fc0a8e1511ccbc1fa60a06f365b24b633713 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: implementation of the inference pipeline of AlphaFold 2.0. License: unknown Vendor: Institut Pasteur Package: gensoft-alphafold-2.3.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5504648 Depends: gensoft-apptainer-1.1.5 Filename: pool/main/gensoft-alphafold-2.3.1_1.0_amd64.deb Size: 5622919560 MD5sum: 03fd93c11745a18165dc49a2acfedadb SHA1: 101acd43b4eb3b71b841733a64bc78d2eb6354d9 SHA256: d3ed54a481539f70df457669a26df0041b80302c161c122d0b8c4da8c73067c4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: implementation of the inference pipeline of AlphaFold 2.0. License: unknown Vendor: Institut Pasteur Package: gensoft-alphafold-2.3.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3692109 Depends: gensoft-apptainer-1.2.3 Filename: pool/main/gensoft-alphafold-2.3.2_1.0_amd64.deb Size: 3754707492 MD5sum: 12b054adb9754eb33cbeca077e432a26 SHA1: 85a75b2cbc75ca7336b0c5d6fdd0e6ac3a980d06 SHA256: 6e934586e8f107d8955ae4e630643f703b9abc0920e7cdd8cbf30190d6695e53 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: implementation of the inference pipeline of AlphaFold 2.0. License: unknown Vendor: Institut Pasteur Package: gensoft-alphafold-3.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5180818 Depends: gensoft-adm-apptainer-1.3.6 Filename: pool/main/gensoft-alphafold-3.0.0_1.0_amd64.deb Size: 5295120324 MD5sum: e579b6228d4b11943769c682e63ca0c2 SHA1: af4160377a3d5edb1924f0e9b5587850601f86cf SHA256: 0e5343482d2b523ec59243e87c9f8063ef1323436791e1261277af6576970c2d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: implementation of the inference pipeline of AlphaFold 2.0. License: unknown Vendor: Institut Pasteur Package: gensoft-alphafold-3.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5142206 Depends: gensoft-adm-apptainer-1.3.6 Filename: pool/main/gensoft-alphafold-3.0.1_1.0_amd64.deb Size: 5255567872 MD5sum: 406b16a874563e86fe48e4ddd6111d2d SHA1: d10d4b9c3811b96a62185acf2328725839d14ef8 SHA256: 2c00e3b886e29a9d8f9bfde344b05db62d450c2240fa700d3c411c77cb5b0204 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: implementation of the inference pipeline of AlphaFold 2.0. License: unknown Vendor: Institut Pasteur Package: gensoft-alphapulldown-1.0.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 9108680 Depends: libc6, gensoft-apptainer-1.2.5 Filename: pool/main/gensoft-alphapulldown-1.0.4_1.0_amd64.deb Size: 9302207340 MD5sum: 2f24becb738ba761d70a33242ece8548 SHA1: 524e9be67b06da1beb2b5b1f260005400db722d5 SHA256: 998f7b3fd4957e81dfa19021bcfe587f990e0ce129d1e7a4bf31915f95c0d628 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-alsa-lib-1.2.1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5825 Depends: libc6 Filename: pool/main/gensoft-alsa-lib-1.2.1.2_1.0_amd64.deb Size: 1929976 MD5sum: c452f3711b6d404a2736a2ed37f692f1 SHA1: 4ca9b563844f93995145ab539f2a8699c741823e SHA256: 187fed8db8edcc7032e7f3942f8c9d09a6bf5734056b223859a8ad4df602925b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. License: unknown Vendor: Institut Pasteur Package: gensoft-amap-2.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 277 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-amap-2.2_1.0_amd64.deb Size: 149812 MD5sum: 7f290498b8cec6a05202a1808b544c67 SHA1: f74c8e667ea125c22f0904a0de55c40ce625fbb7 SHA256: ece6d2cfd09dca0481063f95e940e54c7a38a9847e52e9c386c16343d4cbbfd2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: AMAP is a novel algorithm for producing multiple sequence alignments. It utilizes posterior decoding, and a novel sequence-annealing alignment, instead of the traditional progressive alignment method. License: unknown Vendor: Institut Pasteur Package: gensoft-amiga-0.3.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 279666 Depends: libc6, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-amiga-0.3.0_1.0_amd64.deb Size: 90572670 MD5sum: af88d41e6a58577cfb310988d055740b SHA1: a2dc97d6f45c061c1e041fe42eeffc0501efbda5 SHA256: a79923cd4b9578d6ca9f1b3ab30c0a6577532288c201a2460bcc9dad1241a4ee Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Analysis of Microbial Growth Assays is a user-friendly program for analysis of high-throughput microbial growth assays using Gaussian Process regression. License: unknown Vendor: Institut Pasteur Package: gensoft-amos-3.1.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 384237 Depends: gensoft-blat-36, libc6, gensoft-mummer-3.23, gensoft-blast-2.2.26, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-amos-3.1.0_1.0_amd64.deb Size: 122546596 MD5sum: a30848be9cce7bb0e50656d8fcbf7f9d SHA1: eed9cbb4d51401cdb37b033e0a2b0942eebfebf6 SHA256: 32457960c805804d7ef393bcce9fab8cf7e3038d561478b89fc4c37bd902a882 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: AMOS is collection of tools and class interfaces for the assembly of DNA sequencing reads License: unknown Vendor: Institut Pasteur Package: gensoft-ampliconnoise-1.29 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1332 Depends: gensoft-adm-perl-5.30.1, gensoft-openmpi-4.0.5, gensoft-gsl-2.6, libc6 Filename: pool/main/gensoft-ampliconnoise-1.29_1.0_amd64.deb Size: 612622 MD5sum: bd8dcbf66ca32ed86a9785dab17c39e3 SHA1: 824a781832d79b5b63440d6f1de1c8ad171aa700 SHA256: cdd8874636b5a457b68c9db326b98136ba448d10c557efb2369a923ba2453066 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a collection of programs for the removal of noise from 454 sequenced PCR amplicons. It involves two steps the removal of noise from the sequencing itself and the removal of PCR point errors. This project also includes the Perseus algorithm for chimera removal. License: unknown Vendor: Institut Pasteur Package: gensoft-amrfinder-3.10.24 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 4978 Depends: gensoft-gcc-9.2.0, gensoft-blast+-2.12.0, libssl1.1, zlib1g, gensoft-curl-7.68.0, gensoft-hmmer-3.3.2, libc6 Filename: pool/main/gensoft-amrfinder-3.10.24_1.0_amd64.deb Size: 1944032 MD5sum: ca22e4c1e15f28b8d36072375ce1a8c6 SHA1: 5f9f496a2c9aac9df35fe44f4bef3b81a0049561 SHA256: 56dc5a6cf81c19ed2bd565d8de62122cb97a7b47e278a48667636a08fd5c1805 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This software and the accompanying database are designed to find acquired antimicrobial resistance genes and some point mutations in protein or assembled nucleotide sequences. We have also added plus stress, head, and biocide resistance as well as some virulence factors and E. coli antigens. License: unknown Vendor: Institut Pasteur Package: gensoft-amrfinder-3.10.30 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5109 Depends: gensoft-curl-7.68.0, zlib1g, gensoft-gcc-9.2.0, libc6, gensoft-blast+-2.13.0, gensoft-hmmer-3.4, libssl1.1 Filename: pool/main/gensoft-amrfinder-3.10.30_2.0_amd64.deb Size: 1986406 MD5sum: 3771e4eda151f1c8a2d45b3448f7b516 SHA1: 35602c260cd81a7d1ea81a9c3d05e3228eb0d5d9 SHA256: 2ed0270d4a161294b64a336ef9d111bc88e42ed5857671525313ad8e2fbea3bd Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: This software and the accompanying database are designed to find acquired antimicrobial resistance genes and some point mutations in protein or assembled nucleotide sequences. We have also added plus stress, head, and biocide resistance as well as some virulence factors and E. coli antigens. License: unknown Vendor: Institut Pasteur Package: gensoft-amrfinder-3.10.40 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5276 Depends: libssl1.1, gensoft-hmmer-3.4, gensoft-gcc-9.2.0, gensoft-blast+-2.13.0, zlib1g, gensoft-curl-7.68.0, libc6 Filename: pool/main/gensoft-amrfinder-3.10.40_2.0_amd64.deb Size: 2054340 MD5sum: 0991ddc3ab081d4407273c82f2824ea0 SHA1: 10d2b36f335529e36c3fb9a70f70d09bf54699aa SHA256: a1dd981aa92bd75f755d10a37a134ef2ed5d28e5d179a82c3d28cc563e6c7ebf Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: This software and the accompanying database are designed to find acquired antimicrobial resistance genes and some point mutations in protein or assembled nucleotide sequences. 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We have also added plus stress, head, and biocide resistance as well as some virulence factors and E. coli antigens. License: unknown Vendor: Institut Pasteur Package: gensoft-amrfinder-3.11.20 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5485 Depends: gensoft-blast+-2.13.0, libssl1.1, gensoft-curl-7.68.0, gensoft-gcc-9.2.0, gensoft-hmmer-3.4, libc6, zlib1g Filename: pool/main/gensoft-amrfinder-3.11.20_2.0_amd64.deb Size: 2105590 MD5sum: e35e7aaeb934314a93b9a8729deb7c0f SHA1: b8780d7478fc15a174716bdcbc36d2700f775177 SHA256: 957adaa75c17bf6eb2be5068bc492bafb44ab39405d37bf04f547bcb78b91c1c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: This software and the accompanying database are designed to find acquired antimicrobial resistance genes and some point mutations in protein or assembled nucleotide sequences. 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We have also added plus stress, head, and biocide resistance as well as some virulence factors and E. coli antigens. License: unknown Vendor: Institut Pasteur Package: gensoft-anaquin-3.17.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 151999 Depends: libc6, zlib1g, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-anaquin-3.17.7_1.0_amd64.deb Size: 37991250 MD5sum: 0dee35f4e834980dd27d80df19d6577b SHA1: f8cadc2ee8611991d5c4adca5b651c4d79efa0f4 SHA256: 0c50d8e9618d727afffc7999cc80ccbf510a608aeece214c8cbb911197c55d34 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Anaquin is a command-line software toollkit used to analyse sequins. Anaquin includes tools to partition sequin-derived reads from a library (split), calibrate sequin alignment coverage t (calibrate), calculate diagnostic statistics and generate reports (germline and somatic). License: unknown Vendor: Institut Pasteur Package: gensoft-anarci-1.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 12006 Depends: gensoft-adm-python-2.7.17, gensoft-hmmer-3.3 Filename: pool/main/gensoft-anarci-1.3_1.0_amd64.deb Size: 3478034 MD5sum: 1be06dc5d14df6a3020fdfe292982880 SHA1: a803c79306ee6c3167082d67686db208af5f9795 SHA256: 8898aadd8f07030af453cd01fd4f642d66e6f7f07a18e6d3850a1e425708a62c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool for numbering amino-acid sequences of antibody and T-cell receptor variable domains. 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In theory it is kind of like make without makes wrinkles and with the full portability of pure java code. 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It brings together many aspects of todays cutting-edge strategies including genomics, metagenomics, metatranscriptomics, pangenomics, metapangenomics, phylogenomics, and microbial population genetics in an integrated and easy-to-use fashion through extensive interactive visualization capabilities. License: unknown Vendor: Institut Pasteur Package: gensoft-any2fasta-0.4.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 8 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-any2fasta-0.4.2_1.0_amd64.deb Size: 4464 MD5sum: ea57a5f38f5f0653d52f8337e8209ffc SHA1: 74c7b83e17b923f1e88bc982e3c8c18a391c8513 SHA256: df15dbf1f8ec3c0b992318be1cce4b2b067516b6bd501b5ff217085ce1670383 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Convert various sequence formats to FASTA License: unknown Vendor: Institut Pasteur Package: gensoft-aocc-compiler-3.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 475613 Depends: gensoft-adm-perl-5.30.1, gensoft-adm-python-3.8.1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-aocc-compiler-3.0.0_1.0_amd64.deb Size: 136711338 MD5sum: 7d5d1949726d2e8548222c74c5b42b69 SHA1: a13d4bb4fff95851ed2825ae15860f921c8aef16 SHA256: 5a0774098af09131300ae5a3ec5c29892a96d28067ca9594e2a2166252f83d50 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a high performance, production quality code generation tool. The AOCC environment provides various options to the developers while building and optimizing C, C++ and Fortran applications targeting 32-bit and 64-bit Linux platforms. License: unknown Vendor: Institut Pasteur Package: gensoft-aom-3.12.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 18942 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-aom-3.12.1_1.0_amd64.deb Size: 6826586 MD5sum: ae79aec518bd2a381801c169f9d60c4d SHA1: 24fdf6e93684b270d9df54ceb578bf7ba00da7c5 SHA256: 3fd4628f90acd49426a8acf4792fbf23e9fb06be4690cbb617fd618773dcd610 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: an open-source video codec library that serves as the reference implementation of the AV1 video compression format License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 98038 Depends: gensoft-squashfs-4.4, libc6 Filename: pool/main/gensoft-apptainer-1.0.0_1.0_amd64.deb Size: 41956486 MD5sum: e6b6a9dd7b63d26b3e29b410d864a52e SHA1: d3ed0e983db8b80daf289fd47f424c7ddf6ce43d SHA256: df294f5ad2d3609eaa4ab14843e4300d6f34d0cfb01df7b79efd08f00fc7a6f6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.0.3 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 97032 Depends: gensoft-squashfs-4.4, libc6 Filename: pool/main/gensoft-apptainer-1.0.3_1.0_amd64.deb Size: 44990894 MD5sum: fb5753675bcabca8c0ea3b311f08504c SHA1: 2ca7108325486d67700bdd037647bf9979a7a515 SHA256: cbb4d9122cc8b917ba21ae3145ed30a081825e66c4393df857cfdbe33994eae5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 73711 Depends: libc6, gensoft-squashfs-4.4 Filename: pool/main/gensoft-apptainer-1.1.0_1.0_amd64.deb Size: 34150708 MD5sum: 0e43eda5ad579a31e9920c8314544b15 SHA1: 6fb1d4e5ac9e621e8a9d4319861d9ac9827ef805 SHA256: e1ed815d2c4c6383de78a2177c8fe937d7f61a96066f3de829502ee216f90264 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.1.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 74730 Depends: libc6, gensoft-squashfs-4.4 Filename: pool/main/gensoft-apptainer-1.1.2_1.0_amd64.deb Size: 34611092 MD5sum: 39ad101e671fffeb87b45538490f3722 SHA1: 50b9f4a06d41e67148c11da3b9eb55a6616c9478 SHA256: 1cea8e1d229cedeab625f570d7b2b1b9282eb69deb6b8260da483a0f415f3566 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.1.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 74735 Depends: gensoft-zstd-1.4.4, libc6, gensoft-lzo-2.10, gensoft-lz4-1.9.2, gensoft-xz-5.2.5 Filename: pool/main/gensoft-apptainer-1.1.3_2.0_amd64.deb Size: 34615178 MD5sum: 6ab0dd4671d073391da5cd94d9daed84 SHA1: 342a1efd712686d511e3fe7d9d882500d460af64 SHA256: e2a4f4edb8da96b27bdfc79dab095cf2bdd9373af241b360daa6fe29c78cfe68 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.1.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 75294 Depends: libfuse3-3, libseccomp2, gensoft-lz4-1.9.2, gensoft-zstd-1.4.4, fakeroot, fuse-overlayfs, gensoft-lzo-2.10, libc6, zlib1g, e2fsprogs, squashfs-tools, fuse2fs, gensoft-xz-5.2.5 Filename: pool/main/gensoft-apptainer-1.1.4_2.0_amd64.deb Size: 34837244 MD5sum: 9ec33d209ac80767ec928e64d6dfcd97 SHA1: e47f4e334f58984e350cf4e7e3461e5ede936c14 SHA256: 4c8f5917a4e63b3881443c321bf79f42e9eb40ad17446008ed61cc7bfdddbe7f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.1.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 75300 Depends: libc6, fuse2fs, gensoft-lz4-1.9.2, squashfs-tools, gensoft-lzo-2.10, e2fsprogs, libseccomp2, gensoft-xz-5.2.5, libfuse3-3, fuse-overlayfs, gensoft-zstd-1.4.4, fakeroot, zlib1g Filename: pool/main/gensoft-apptainer-1.1.5_1.0_amd64.deb Size: 34842544 MD5sum: acd618aaf2fa81cc36a1037cbfd4e662 SHA1: 08ddf98df451e5682f3dc601e3709a4b0890e098 SHA256: d3e4ccc7caccb9708c1dcff5e1651589bb7367da65808a665c6f7eb960567e86 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.1.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 75300 Depends: libseccomp2, fuse2fs, libc6, gensoft-lzo-2.10, gensoft-lz4-1.9.2, libfuse3-3, squashfs-tools, fakeroot, fuse-overlayfs, gensoft-xz-5.2.5, gensoft-zstd-1.4.4, zlib1g, e2fsprogs Filename: pool/main/gensoft-apptainer-1.1.6_1.0_amd64.deb Size: 34842414 MD5sum: bd20c88d31901bccbb765fabb72790c7 SHA1: 217e6e1a969467c33f4041d8828db6f12d754489 SHA256: e235094369500c1c65c3791f4bdbfcf2a731801f494ccbbc46d44f331a53a184 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.1.9 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 75328 Depends: squashfs-tools, fakeroot, e2fsprogs, libfuse3-3, fuse-overlayfs, libseccomp2, libc6, gensoft-lzo-2.10, gensoft-lz4-1.9.2, fuse2fs, zlib1g, gensoft-zstd-1.4.4, gensoft-xz-5.2.5 Filename: pool/main/gensoft-apptainer-1.1.9_1.0_amd64.deb Size: 34859212 MD5sum: c67c2bd7bea148220c7093240ab59d98 SHA1: aefc5c039771b7fc8c8e4e2e6d942ad1882cfad5 SHA256: 7bc05e458a4692cd3e118637a828a4f3eb82e9f85cfe62934b145a644a0961ac Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.2.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 89162 Depends: fuse-overlayfs, gensoft-zstd-1.4.4, libfuse3-3, libseccomp2, fakeroot, gensoft-lzo-2.10, zlib1g, gensoft-lz4-1.9.2, gensoft-xz-5.2.5, squashfs-tools, fuse2fs, e2fsprogs, libc6 Filename: pool/main/gensoft-apptainer-1.2.2_1.0_amd64.deb Size: 41817598 MD5sum: 1c7bd2263bb9ca461a786794a65af933 SHA1: 3bcecd57b19037bc7ce6a554d6807e091c68036d SHA256: 563a7aa170ccf4c10a73df3f122c69221b6ba02c5e2e08e785ec817e05254eb5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.2.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 89215 Depends: libseccomp2, zlib1g, gensoft-zstd-1.4.4, fuse2fs, libfuse3-3, e2fsprogs, gensoft-lz4-1.9.2, fakeroot, fuse-overlayfs, gensoft-lzo-2.10, squashfs-tools, gensoft-xz-5.2.5, libc6 Filename: pool/main/gensoft-apptainer-1.2.3_1.0_amd64.deb Size: 41834344 MD5sum: ddb19a305750fc910ebeb87f83ec69ce SHA1: be789033fcc4931737a639a46be5d41008ebd42c SHA256: d73bb41d945d3f205fd1fd2fc2ddaec4930d9700fabcb4afadb389599b6cdb1e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.2.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 89214 Depends: libc6, fuse-overlayfs, gensoft-lz4-1.9.2, fuse2fs, squashfs-tools, fakeroot, gensoft-zstd-1.4.4, e2fsprogs, libfuse3-3, libseccomp2, zlib1g, gensoft-xz-5.2.5, gensoft-lzo-2.10 Filename: pool/main/gensoft-apptainer-1.2.4_1.0_amd64.deb Size: 41834354 MD5sum: 72f5a91a3231c327b2715589fd01e64e SHA1: b6e13b10980365a163228e2eda1965a797bd70a8 SHA256: 666a5dc0d07083745236abdb7f0c7c8738b0250169df1d1d38bebda183f9eeb9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.2.5 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 89223 Depends: e2fsprogs, gensoft-lz4-1.9.2, gensoft-lzo-2.10, fakeroot, fuse-overlayfs, libfuse3-3, squashfs-tools, gensoft-zstd-1.4.4, fuse2fs, libc6, libseccomp2, zlib1g, gensoft-xz-5.2.5 Filename: pool/main/gensoft-apptainer-1.2.5_2.0_amd64.deb Size: 41842698 MD5sum: e5e9302e192efda3b9a78c1cb5e16794 SHA1: a8dc5d282ef40e5d04743f776ff4e1923274f2f8 SHA256: 4b167ba19bf563869f47f9f65ab26d026cc5438a4b85e1555e4416e0d8d27322 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.3.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 94336 Depends: fakeroot, libc6, gensoft-lzo-2.10, e2fsprogs, fuse2fs, zlib1g, gensoft-lz4-1.9.2, gensoft-zstd-1.4.4, fuse-overlayfs, squashfs-tools, libfuse3-3, gensoft-xz-5.2.5, libseccomp2 Filename: pool/main/gensoft-apptainer-1.3.1_1.0_amd64.deb Size: 44455910 MD5sum: 8bbcab39f3388e77d926fe622421c143 SHA1: ae6f0500d7b5fd13ce4a1cd390b32609209f4ac2 SHA256: 5f9251a6958820ef8ea25e0458b08e10a96f2d878c1db29a4dd63feedaa9a662 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.3.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 94783 Depends: gensoft-lz4-1.9.2, fuse-overlayfs, libfuse3-3, fuse2fs, gensoft-xz-5.2.5, libc6, libseccomp2, gensoft-zstd-1.4.4, fakeroot, gensoft-lzo-2.10, squashfs-tools, e2fsprogs, zlib1g Filename: pool/main/gensoft-apptainer-1.3.2_1.0_amd64.deb Size: 44691272 MD5sum: 3c8113a29a9ab9af5077a281f6aa7cd2 SHA1: 883f85f8e6e1659d0a593a211afcf868db61ca8b SHA256: 4ac68c902c00209bab7763a6ef69e711eeec96c73196582f50c12e87be892758 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.3.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 94604 Depends: zlib1g, squashfs-tools, libfuse3-3, libc6, libseccomp2, libuuid1, fuse2fs, gensoft-lz4-1.9.2, fuse-overlayfs, fakeroot, gensoft-zstd-1.4.4, gensoft-lzo-2.10, e2fsprogs, libblkid1, gensoft-xz-5.2.5 Filename: pool/main/gensoft-apptainer-1.3.5_1.0_amd64.deb Size: 44624168 MD5sum: a6f1a0609d954787701725b3c54a272b SHA1: 401d28a7388739cc6046428d5bf4088a95fbf9a6 SHA256: f1c7ad34745067548ccc17dfd330da88f13df57b0a8c3a760e0d2e13a570617f Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-apptainer-1.4.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 109413 Depends: squashfs-tools, fuse-overlayfs, libblkid1, libc6, libfuse3-3, gensoft-lz4-1.9.2, e2fsprogs, libseccomp2, libuuid1, zlib1g, fakeroot, fuse2fs, gensoft-xz-5.2.5, gensoft-zstd-1.4.4, gensoft-lzo-2.10 Filename: pool/main/gensoft-apptainer-1.4.1_1.0_amd64.deb Size: 51079190 MD5sum: 1b1e7d74626b7f127e82752565c07fed SHA1: cec9264b99efb44c612d76b8c130b2a45a90c1ed SHA256: f7f2e5129b8c99d0e5e254578b15ebb0f08648fcf25cdea6d764bc6d8df7994a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-aps-1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5775868 Depends: libgcc-s1, gensoft-adm-python-3.8.1, zlib1g, libstdc++6, libc6 Filename: pool/main/gensoft-aps-1.0_1.0_amd64.deb Size: 2736573190 MD5sum: 9796cfe465442082eafb9d0be8f618d7 SHA1: 1f0b5c0ef98dc4358aac29c5da288d4027f4dd7a SHA256: 512da8e2681443054f1215582cc0d2ccf4037e4917c23cc22832e6dcc6fa2fcf Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Automatic Placenta Segmentation, a neural network model for automatic segmentation of the placenta embedded in whole-uterus Blood Oxygen Level Dependent (BOLD) MRI. License: unknown Vendor: Institut Pasteur Package: gensoft-aragorn-1.2.36 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 341 Depends: libc6 Filename: pool/main/gensoft-aragorn-1.2.36_1.0_amd64.deb Size: 112248 MD5sum: e9812b7c2232dd453f581d2a283cb38d SHA1: 4e2d15113f15a2087e164a0a5c4d7394b1d83e88 SHA256: ff63e1021feab4f958ef780d5d450f6890c1eb249d897fbc216f7354f2418683 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a program to detect tRNA genes and tmRNA genes in nucleotide sequences License: unknown Vendor: Institut Pasteur Package: gensoft-aragorn-1.2.38 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 442 Depends: libc6 Filename: pool/main/gensoft-aragorn-1.2.38_2.0_amd64.deb Size: 132432 MD5sum: c6c5c9ddbcff900af164e825740e7347 SHA1: cc64c6162c359a25700247ad3b7d18c19f889583 SHA256: edbd77bb685b0a64e1351e387fc66da9e2bd531b09c6508277b1e16b3354d708 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a program to detect tRNA genes and tmRNA genes in nucleotide sequences License: unknown Vendor: Institut Pasteur Package: gensoft-aragorn-1.2.41 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 462 Depends: libc6 Filename: pool/main/gensoft-aragorn-1.2.41_2.0_amd64.deb Size: 134996 MD5sum: 70bbb4ee8c1517e2afa177087222eb20 SHA1: 6f31718c2c52e4d080137e4c621f15e4e326e407 SHA256: c6afb67328962a3bf105c45e8b9c0aad618db6911fb9b214f17814dba690205d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a program to detect tRNA genes and tmRNA genes in nucleotide sequences License: unknown Vendor: Institut Pasteur Package: gensoft-architeuthis-0.4.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5525 Depends: libc6, gensoft-taxonkit-0.20.0 Filename: pool/main/gensoft-architeuthis-0.4.0_1.0_amd64.deb Size: 3102938 MD5sum: 8b08223896e5b1b7f33f4ddb023500c3 SHA1: 5b9b049697a9649eee061cceddcec091eb284cc8 SHA256: 6a31fe7ae58c61a4270cabe7feca99b2048882adccabc46162cc93e299a64224 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a fast standalone command to supplement the Kraken suite of software tools such like Kraken2, KrakenUniq, and Bracken. License: unknown Vendor: Institut Pasteur Package: gensoft-arcs-1.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 8451 Depends: gensoft-samtools-1.10, gensoft-sra-sdk-2.10.2, gensoft-xz-5.2.4, gensoft-jellyfish-2.3.0, gensoft-abyss-2.2.5, gensoft-gcc-8.4.0 Filename: pool/main/gensoft-arcs-1.1.1_1.0_amd64.deb Size: 2004712 MD5sum: c44a5504ded579e3076a4d1ca2503468 SHA1: e1fb9e325502937cc5a73b2a66e90047dcd619c4 SHA256: 245dd172b2cc0ab95754a61e6ec0450b2b6f9008cb3ce9afe4cf605fc2b02d89 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Scaffold genome sequence assemblies using linked read sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-aretomo-1.3.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5425 Depends: gensoft-cuda-11.8 Filename: pool/main/gensoft-aretomo-1.3.4_1.0_amd64.deb Size: 2185134 MD5sum: 2acefcf68bdb90b04ccfbc4f72fee58d SHA1: 38056bb778b1d7c552d0fdb528244d426eb2d042 SHA256: 79368bb1be16c8d06f1b4035aa01cdca1cd06abe85879d1490906b5f35b02255 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-aretomo3-2.0.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5171898 Depends: gensoft-libtiff-4.1.0, gensoft-xz-5.2.5, gensoft-gcc-9.2.0, libstdc++6, libc6, gensoft-cuda-12.2, libgcc-s1, zlib1g, gensoft-libjpeg-turbo-2.0.4 Filename: pool/main/gensoft-aretomo3-2.0.6_1.0_amd64.deb Size: 2905367318 MD5sum: a225376adceebafeefe1ad12a1dc83fd SHA1: ceeda25c7b9885084f0b9b975c02cdb6df4fd46c SHA256: 00163a523be77d93770da5cd89baf21764cbd1e026fe9775050f47571dfdc0e3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: AreTomo3 is a multi-GPU accelerated software package that enables real-time fully automated reconstruction of cryoET tomograms in parallel with cryoET data collection. License: unknown Vendor: Institut Pasteur Package: gensoft-argtable-2.13 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1696 Depends: libc6 Filename: pool/main/gensoft-argtable-2.13_1.0_amd64.deb Size: 1344700 MD5sum: 4289b91ad0ffc379f0209d81ed5ad062 SHA1: e92e0feefdf32ad7f5ee10c4e84abd64e94f4025 SHA256: d19a9025b4198ffe849450da0dabe86a65ed7b55e548941e6db47de328575b9a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss License: unknown Vendor: Institut Pasteur Package: gensoft-ariba-2.14.6 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 220666 Depends: libstdc++6, gensoft-mummer-3.23, libc6, gensoft-spades-3.15.2, libgcc-s1, gensoft-cd-hit-4.8.1, gensoft-bowtie2-2.3.5.1, zlib1g, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-ariba-2.14.6_1.0_amd64.deb Size: 64975708 MD5sum: c4140710dbcfb742c2a80f37705ab8e3 SHA1: e7197fcd42deff45c0e4222f3f1e643fc2272116 SHA256: 65c2bbaf05432187e6a64ed9c1d07ad145ee4c99c3cc0a09af6b7fecc67cd318 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool that identifies antibiotic resistance genes by running local assemblies. It can also be used for MLST calling. License: unknown Vendor: Institut Pasteur Package: gensoft-armadillo-10.8.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 5206 Depends: libc6, gensoft-gcc-9.2.0, gensoft-atlas-3.10.2, gensoft-blas-3.8.0, zlib1g, gensoft-hdf5-1.10.6 Filename: pool/main/gensoft-armadillo-10.8.2_1.0_amd64.deb Size: 635854 MD5sum: de06ef708d8465961a5e2786d340119e SHA1: ffca2bb6cdc69b1f54748e3383bf49c936f3ff55 SHA256: 33be7b713b55f4c8fbe8fbdf17cd212ef3d231e6db4d65773d6729d9209b23b1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use. License: unknown Vendor: Institut Pasteur Package: gensoft-armadillo-9.800.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4830 Depends: libc6, gensoft-blas-3.8.0, gensoft-gcc-9.2.0, gensoft-hdf5-1.10.6, zlib1g, gensoft-atlas-3.10.2 Filename: pool/main/gensoft-armadillo-9.800.4_1.0_amd64.deb Size: 593960 MD5sum: faab1895f2d653a57e15c0d75bbad4b1 SHA1: 7cfe7ed96d30aa0b47a777d804c15978354fa698 SHA256: 0e8a12360a1c3f0f1c359603c2898fb47dd588707aa119db7446969837af348f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use. License: unknown Vendor: Institut Pasteur Package: gensoft-arpack-ng-3.7.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2566 Depends: gensoft-atlas-3.10.2, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-arpack-ng-3.7.0_1.0_amd64.deb Size: 731300 MD5sum: de8cfaa9f02b2046379a8a777ae48367 SHA1: 5f109dbb35264aca29d7cef5b39c2fc192c5a8f3 SHA256: e6d1193989afbc6ef846cb4b1e2011a629f7b475df992b54b49059a1e1cbc27a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. License: unknown Vendor: Institut Pasteur Package: gensoft-art-2016-06-05 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 13803 Depends: gensoft-gcc-9.2.0, libc6, gensoft-gsl-2.6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-art-2016-06-05_2.0_amd64.deb Size: 4154674 MD5sum: 276c250a859ff34cb147a18f9a21ead4 SHA1: 711b2944a3915d8c165063ecdaa8b226327ea499 SHA256: fa96991bc361ed9af9b9cba960def390951f7646ac6ff34f51a36e198012653a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms. Illuminas Solexa, Roches 454 and Applied Biosystems SOLiD License: unknown Vendor: Institut Pasteur Package: gensoft-artemis-15.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 21279 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-artemis-15.0_1.0_amd64.deb Size: 11130776 MD5sum: 3ecc48074ffd92080aa90b89300f51ea SHA1: 1648a3b1c1aa36f110f709c2bd36902d067afad0 SHA256: 81435de326b38dd824c5ed26df4a3e34a78abf5a79993eb071a447bf75536610 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation License: unknown Vendor: Institut Pasteur Package: gensoft-asciidoc-8.6.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 769 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-asciidoc-8.6.9_1.0_amd64.deb Size: 209752 MD5sum: 5daea50f4234e85eedc5241c0ab267ce SHA1: 8c94eedb944f7c1113f0ffec54172708b35978f4 SHA256: 491d607f23327ebe76b142dba9c5f09185f1a511c5ff0284bf60d4e61869e49b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page. License: unknown Vendor: Institut Pasteur Package: gensoft-asles-20220503 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 202798 Depends: zlib1g, libgcc-s1, gensoft-gcc-9.2.0, libstdc++6, gensoft-adm-python-2.7.17, libc6, gensoft-adm-perl-5.30.1, gensoft-gsl-2.5 Filename: pool/main/gensoft-asles-20220503_2.0_amd64.deb Size: 64114908 MD5sum: 1a99aeda0ffa315a67001c964ad092db SHA1: 6553a6484d185e5a7260391b5f6d2cb246bea7df SHA256: 25ad99469f644a0e1e2225654e651f83dea0477c0efaf36f738165b7940d8381 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ASsembly Likelihood EStimator License: unknown Vendor: Institut Pasteur Package: gensoft-assembly-likelihood-estimator-20180904 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 208310 Depends: gensoft-adm-python-2.7.17, gensoft-gsl-2.6, libgcc-s1, zlib1g, libstdc++6, libc6 Filename: pool/main/gensoft-assembly-likelihood-estimator-20180904_1.0_amd64.deb Size: 67294780 MD5sum: e6cce74c717340850b4d6d7b7d03cf87 SHA1: 2b544e08bb11a8a663f902759e8aa82ef39d7111 SHA256: 0ed613ee10721a8737e02affcb9c6e76bc154e5498ced3827001827099e0d654 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Assembly Likelihood Estimator License: unknown Vendor: Institut Pasteur Package: gensoft-assembly-likelihood-estimator-20220503 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 207996 Depends: gensoft-gsl-2.6, libc6, libgcc-s1, libstdc++6, zlib1g, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-assembly-likelihood-estimator-20220503_1.0_amd64.deb Size: 67238466 MD5sum: b47c8e9434f4d33795dd09ad97b9fd54 SHA1: 4b429a1cf1413a84201495fc776d4db7964d49e2 SHA256: 35b45fee00dbbe50a489ae62ef0556b5a1296fd8811220859f5172e64e99a87f Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Assembly Likelihood Estimator License: unknown Vendor: Institut Pasteur Package: gensoft-assu-1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3098 Depends: gensoft-dsrc-2.0.2, gensoft-bwa-mem2-2.2.1, gensoft-bzip2-1.0.6, gensoft-gawk-5.0.1, gensoft-samtools-1.18, bc Filename: pool/main/gensoft-assu-1.0_1.0_amd64.deb Size: 3130238 MD5sum: 74a3c703c77afc30d6a1b14af862aab5 SHA1: 38f8525e397b885683308f87ce2019c2c6c2e2ac SHA256: b7ec8dc8ae4175a769f05fb54995c1c8e33e39a0603774ca309538bdeb6e3199 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: ASSU (ASSembling SSU) is a command line tool written in Bash to carry out the reference-guided assembly of small subunit (SSU) 16S ribosomal ribonucleic acid (rRNA) using short high-throughput sequencing (HTS) reads derived from whole genome sequencing of bacteria or archaea strains. License: unknown Vendor: Institut Pasteur Package: gensoft-assu-1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2736 Depends: gensoft-bzip2-1.0.6, gensoft-samtools-1.18, gensoft-bwa-mem2-2.2.1, gensoft-gawk-5.0.1, gensoft-dsrc-2.0.2 Filename: pool/main/gensoft-assu-1.1_1.0_amd64.deb Size: 2758434 MD5sum: 3763caf125852767b7a4276dc36e78b3 SHA1: 248fe223609a479052118610b148c34f59052fc1 SHA256: a694f4e22f1d38f078e2cf6be8dcafc789f19ef10980dd7d3c6200321b12842e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: ASSU (ASSembling SSU) is a command line tool written in Bash to carry out the reference-guided assembly of small subunit (SSU) 16S ribosomal ribonucleic acid (rRNA) using short high-throughput sequencing (HTS) reads derived from whole genome sequencing of bacteria or archaea strains. License: unknown Vendor: Institut Pasteur Package: gensoft-aster-1.19 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6548 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-aster-1.19_1.0_amd64.deb Size: 2457386 MD5sum: aa907ab7fbad243d9f75635081fb80fd SHA1: 3a84fec3b81bd3032a25d0d3de7a60b0339f8c55 SHA256: 833a56cbdfe7fe39ff069f59e81d74bc3af89e34e890cfe17886787e217e3d25 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Accurate Species Tree EstimatoR - a family of optimation algorithms for species tree inference (including ASTRAL & CASTER) License: unknown Vendor: Institut Pasteur Package: gensoft-at-spi2-atk-2.38.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1011 Depends: gensoft-atk-2.36.0, libc6, gensoft-at-spi2-core-2.39.1, gensoft-glib-2.66.7, gensoft-xorg-libs-1.1, gensoft-libiconv-1.16, gensoft-libffi-3.3, gensoft-at-spi2-atk-2.38.0, gensoft-pcre-8.43, gensoft-dbus-1.13.12 Filename: pool/main/gensoft-at-spi2-atk-2.38.0_1.0_amd64.deb Size: 316132 MD5sum: 2fab04be6060a36d02c449223aaf9a97 SHA1: 3c5b4b6466b956683a97ef6d05554f17c822ba4b SHA256: 4098714552494457d68ee57692bb2e96d4ca45b01e64b9714f1e8365e9d9e8f5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Accessibility Toolkit provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. License: unknown Vendor: Institut Pasteur Package: gensoft-at-spi2-core-2.39.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2262 Depends: gensoft-libiconv-1.16, gensoft-pcre-8.43, gensoft-libffi-3.3, gensoft-pcre2-10.34, zlib1g, libselinux1, libpcre2-8-0, libc6, libmount1, gensoft-glib-2.66.7, gensoft-xorg-libs-1.1, libblkid1, gensoft-dbus-1.13.12, gensoft-at-spi2-core-2.39.1 Filename: pool/main/gensoft-at-spi2-core-2.39.1_1.0_amd64.deb Size: 655462 MD5sum: 9cffbf2914358a5df15c290b215b39d3 SHA1: 8bb47ace10a516fa7faa6d15128410dd31140729 SHA256: 2b0962a72e488ccc981bb6d440591940c4dff6b0c7691c697ccd821ae28f4072 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Accessibility Toolkit provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. License: unknown Vendor: Institut Pasteur Package: gensoft-atac-seq-pipeline-2.1.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 22 Depends: gensoft-graalvm-ce-java11-20.0.0, gensoft-singularity-3.8.3, gensoft-caper-2.1.2 Filename: pool/main/gensoft-atac-seq-pipeline-2.1.0_1.0_amd64.deb Size: 5398 MD5sum: b44be7173bc83f6c61e10f87474b9186 SHA1: 67ded0b23129b1e693eecbf77df1104599374743 SHA256: fbb89111a3fddeb4b5a2953eca99d8a53483e3aac5f92496c317f9b0673ec793 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ENCODE ATAC-seq pipeline designed for automated end-to-end quality control and processing of ATAC-seq and DNase-seq data. License: unknown Vendor: Institut Pasteur Package: gensoft-atk-2.36.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2198 Depends: libc6, gensoft-libiconv-1.16, gensoft-pcre-8.43, gensoft-glib-2.66.7, gensoft-libffi-3.3 Filename: pool/main/gensoft-atk-2.36.0_1.0_amd64.deb Size: 425754 MD5sum: a4e13ad776d1b369fe6483a14fa47e2f SHA1: 3a9ebce447465e1f12dc362e21392abd2fd3c3cf SHA256: 18a2d440fa91204de916687ff3252e22095913cd186b53150cbab86c0e7fe4dc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Accessibility Toolkit provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. License: unknown Vendor: Institut Pasteur Package: gensoft-atk-2.9.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1828 Depends: gensoft-libffi-3.3, gensoft-glib-2.58.3, libc6 Filename: pool/main/gensoft-atk-2.9.4_1.0_amd64.deb Size: 365662 MD5sum: 059eddf6a25972f5e7aece2e323a0252 SHA1: ccea1aa1dec62748997989c5091b8b9a5fcd85f7 SHA256: c61ef80c03903270f5421c759210a819f48b042cd99336b09dbba96653c1a805 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Accessibility Toolkit provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. License: unknown Vendor: Institut Pasteur Package: gensoft-atlas-3.10.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 55995 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-atlas-3.10.2_1.0_amd64.deb Size: 17558786 MD5sum: 2beeb4d8a21ebe9ab92986cde0ee3f9d SHA1: e399d1107ca3d417a3216de0807a161906d5feee SHA256: a21176f9ae739c7ab95af4cad09a7ef4621ae23fdcce4fd7c260872bd4bfe13d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Automatically Tuned Linear Algebra Software License: unknown Vendor: Institut Pasteur Package: gensoft-atram-2.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 86961 Depends: gensoft-velvet-1.2.10, gensoft-abyss-2.2.5, gensoft-adm-python-3.8.1, gensoft-spades-3.14.1, libc6, gensoft-bwa-0.7.17, gensoft-bowtie2-2.1.0, gensoft-exonerate-2.4.0, gensoft-trinityrnaseq-2.9.1, gensoft-blast+-2.10.0 Filename: pool/main/gensoft-atram-2.3.1_1.0_amd64.deb Size: 25545848 MD5sum: 8970ecd4a10bc641d0f43aa06ee8b785 SHA1: 196acc155543d18eb2f3681881bc6cfeefbf1bee SHA256: 13a8335a7c7f58253702f207fb46bcb683e5247055b726a43b3ce323f3c4c238 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: aTRAM (automated target restricted assembly method) is an iterative assembler that performs reference-guided local de novo assemblies using a variety of available methods. It is well-suited to various tasks where Next-Generation Sequence (NGS) data needs to be queried for gene sequences, such as phylogenomics. License: unknown Vendor: Institut Pasteur Package: gensoft-atropos-1.1.25 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 24569 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-atropos-1.1.25_1.0_amd64.deb Size: 7626706 MD5sum: 08aba36a91867c99570ab04702f71e41 SHA1: e836d733b9b2e8a15643e92172270afc0d52b9de SHA256: 0c394158ad3ee2cc8e8607743e83d446dd3a96a8bf1a0037927963a0c897ea7e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: specific, sensitive, and speedy trimming of NGS reads License: unknown Vendor: Institut Pasteur Package: gensoft-attr-2.4.48 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 497 Depends: libc6 Filename: pool/main/gensoft-attr-2.4.48_1.0_amd64.deb Size: 150608 MD5sum: 6100e9fb05ea37e170ebe8803e45fef7 SHA1: 6efa4a13ba036815fb3c3dbd1a40783f585210c9 SHA256: 1d73a8451770b86e2cae623ff76e1f6d2fd234638027dbc3d52fb0e5aacd5ed0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Commands for Manipulating Filesystem Extended Attributes License: unknown Vendor: Institut Pasteur Package: gensoft-augustus-3.3.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 446909 Depends: gensoft-samtools-1.10, gensoft-xz-5.2.5, gensoft-gcc-9.2.0, libncurses5, gensoft-libbam-2.5.1, gensoft-hal-v2.1, libc6, libtinfo5, gensoft-libbam-0.1.19, gensoft-curl-7.68.0, gensoft-ucsc-tools-v390, zlib1g, gensoft-adm-perl-5.30.1, libbz2-1.0 Filename: pool/main/gensoft-augustus-3.3.3_2.0_amd64.deb Size: 157190280 MD5sum: 5c99b3ae85f7d2dfa459eaa8d1426a29 SHA1: b32c53a7bda71eec3e588a1c849b5785d00bc995 SHA256: a1f0c9e754e119428bf27131463ee3d2368cf0cdd32e6853f997914cc1b8a727 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences. 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It License: unknown Vendor: Institut Pasteur Package: gensoft-auto3dem-v4.05 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 12394 Depends: libc6, gensoft-adm-python-2.7.17, gensoft-adm-perl-5.30.1, zlib1g, gensoft-gcc-9.2.0, gensoft-openmpi-4.0.5 Filename: pool/main/gensoft-auto3dem-v4.05_1.0_amd64.deb Size: 4296274 MD5sum: f281c06ee5ac97d455eb616163b03d42 SHA1: 9b1306337208f9f9d4f96526a0c1cd4af361250c SHA256: 70c163ce2be7fd43583767fca424715ceae85a46219bb76d3e935a496bc42875 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a semi-automated image reconstruction system that provides all the tools to process raw micrographs acquired at an electron microscope and generate a three-dimensional reconstruction. License: unknown Vendor: Institut Pasteur Package: gensoft-autoconf-2.69 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 8486 Depends: gensoft-m4-1.4.18, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-autoconf-2.69_1.0_amd64.deb Size: 2005770 MD5sum: d6cd3c7346f21d92ac213542093d079e SHA1: 62f9ae548ea0ab624ccf51ab9f6ac073cabc4940 SHA256: 57264f8fb96da2c6a8c3cbbc939531090ab8765969cf596c89ca23eb9eb612d5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. License: unknown Vendor: Institut Pasteur Package: gensoft-autocycler-0.1.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 10471 Depends: gensoft-seqtk-1.4, gensoft-racon-1.4.3, gensoft-flye-2.9.5, coreutils, gensoft-nextdenovo-2.5.2, libc6, gensoft-minipolish-0.1.3, gensoft-adm-python-3.8.1, gensoft-gcc-9.2.0, gensoft-any2fasta-0.4.2, gensoft-necat-0.0.1, gensoft-minimap2-2.28, gensoft-raven-1.6.0, gensoft-canu-2.2, gensoft-miniasm-0.3, gensoft-nextpolish-1.4.1 Filename: pool/main/gensoft-autocycler-0.1.2_1.0_amd64.deb Size: 3990494 MD5sum: 839f2d5f80b00d2fccc67a5f7d18508d SHA1: df7cd8bc80562af88363513bbb4612ac60a71bdd SHA256: 74be7ea79a358eaea81fe637e5f7d303d2cf00c03184075a9fddd7863243d2b9 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A tool for generating consensus long-read assemblies for bacterial genomes License: unknown Vendor: Institut Pasteur Package: gensoft-autocycler-0.4.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 10527 Depends: gensoft-necat-0.0.1, gensoft-nextpolish-1.4.1, gensoft-raven-1.8.3, gensoft-gcc-9.2.0, gensoft-racon-1.5.0, gensoft-plassembler-1.7.1, gensoft-minipolish-0.2.0, gensoft-nextdenovo-2.5.2, gensoft-seqtk-1.5, gensoft-flye-2.9.6, gensoft-adm-python-3.8.1, gensoft-canu-2.2, coreutils, libc6, gensoft-any2fasta-0.4.2, gensoft-miniasm-0.3, gensoft-minimap2-2.28 Filename: pool/main/gensoft-autocycler-0.4.0_1.0_amd64.deb Size: 4019338 MD5sum: 29c2a319a5d7da9ab4e22fd7d745fcd0 SHA1: d458448cc3a70dd6cc34cad48af876989105023a SHA256: 75b11e749c40f4e3d5ce1301f68d30b7ed8f91a1bcc46927d75d7b0b03e96ccf Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A tool for generating consensus long-read assemblies for bacterial genomes License: unknown Vendor: Institut Pasteur Package: gensoft-autocycler-0.5.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 10908 Depends: gensoft-canu-2.3, gensoft-minipolish-0.2.0, libc6, gensoft-raven-1.8.3, gensoft-myloasm-0.1.0, gensoft-nextpolish-1.4.1, gensoft-necat-0.0.1, gensoft-plassembler-1.7.1, gensoft-flye-2.9.6, gensoft-nextdenovo-2.5.2, gensoft-wtdbg2-2.5, gensoft-seqtk-1.5, gensoft-gcc-9.2.0, gensoft-miniasm-0.3, gensoft-adm-python-3.8.1, gensoft-metamdbg-1.2, gensoft-minimap2-2.28 Filename: pool/main/gensoft-autocycler-0.5.0_1.0_amd64.deb Size: 4145252 MD5sum: 8d8ac928d242db5c55e3696adb22249f SHA1: 8fd53d742f56a635b58d3c9d53239bb5010d7586 SHA256: 45648e5d8ffdd260be93b830dad7134f31414c8e42bbabc579bcdf5c86b4dffe Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A tool for generating consensus long-read assemblies for bacterial genomes License: unknown Vendor: Institut Pasteur Package: gensoft-autodock-vina-1.1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 28187 Filename: pool/main/gensoft-autodock-vina-1.1.2_1.0_amd64.deb Size: 8703970 MD5sum: 817e1e311e3b2ef3b51a2c98ae2f6349 SHA1: 010d0486d8db55eef77bb75c6c5d1a9c7c27f935 SHA256: 515ecdd5e98377ca254445fb5d267703649b24868d2ce3b7b5d52279c120f7ee Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: program for doing molecular docking. License: unknown Vendor: Institut Pasteur Package: gensoft-automake-1.16 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3902 Depends: gensoft-adm-perl-5.30.1, gensoft-m4-1.4.18, gensoft-autoconf-2.69 Filename: pool/main/gensoft-automake-1.16_2.0_amd64.deb Size: 945394 MD5sum: b74fb04bb0aa0458b3e7223439990c06 SHA1: b45fd9f06eaf405feae9dd351e2d03b1d177eb4d SHA256: c3425b1d76e494fdbab47a4c57d077c3883a2e27871216432896c44669c522a2 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Automake is a tool for automatically generating Makefile.in files compliant with the GNU Coding Standards. Automake requires the use of Autoconf License: unknown Vendor: Institut Pasteur Package: gensoft-automake-1.16.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3935 Depends: gensoft-adm-perl-5.30.1, gensoft-m4-1.4.18, gensoft-autoconf-2.69 Filename: pool/main/gensoft-automake-1.16.3_2.0_amd64.deb Size: 955744 MD5sum: db3e5f7472dd94295194fe84709f3a0d SHA1: b92360744ae666de167093268a66b909158dbed0 SHA256: 38479f04c95f872b98f6484a705dc1f79618ec744ce8c34293f7c2b71d63e5a8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Automake is a tool for automatically generating Makefile.in files compliant with the GNU Coding Standards. Automake requires the use of Autoconf License: unknown Vendor: Institut Pasteur Package: gensoft-bacphlip-0.9.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 319846 Depends: gensoft-adm-python-3.8.1, gensoft-hmmer-3.3 Filename: pool/main/gensoft-bacphlip-0.9.3_1.0_amd64.deb Size: 93800296 MD5sum: c06615720ba881bd695e5c3c4bf62797 SHA1: 9fa9d160773531aec379b7a970915926527d2f8e SHA256: b54cfbb6ebd9a45d0447b62d1b517f61edcc5f8e92ea88cc59e08290d1982ddc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: BACPHLIP - a bacteriophage lifestyle prediction tool. The BACPHLIP software is designed to test whether a given phage genome (`.fasta` formatted) is likely to be either temperate (lysogenic) or virulent (lytic). License: unknown Vendor: Institut Pasteur Package: gensoft-bactabolize-1.0.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 455178 Depends: gensoft-prodigal-2.6.3.pp1, libgcc-s1, zlib1g, gensoft-adm-python-3.8.1, gensoft-blast+-2.13.0, libstdc++6, libc6 Filename: pool/main/gensoft-bactabolize-1.0.0_2.0_amd64.deb Size: 138129556 MD5sum: 68e48d6546db72b0520033730430c734 SHA1: c12f53a5066ee0eb665ea62020d52de4ab76b164 SHA256: eff299c7759588c45e6390a659ad6c8397c60fab5e2a676f93a74621b415abb9 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A high-throughput genome-scale metabolic reconstruction and growth simulation pipeline. License: unknown Vendor: Institut Pasteur Package: gensoft-bactsnp-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 25833 Depends: which, gensoft-java-1.8.0, zlib1g, libc6, gensoft-samtools-1.10, gensoft-art-2016-06-05, bc, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0, gensoft-mummer-3.23 Filename: pool/main/gensoft-bactsnp-1.1.0_1.0_amd64.deb Size: 8636962 MD5sum: c63e927bbfa49067464ca90f1396b5cd SHA1: 7a4035bfa9c5a14cf720c18a45423a181d28bf4d SHA256: a3716e5db2f3cc371e3e0a927326d7c06b8a2e98e1beaa86ec29bfe64d11e8bd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: BactSNP is a tool to identify SNPs among bacterial isolates. BactSNP can detect SNPs and create a simple TSV file with SNP information as well as an alignment FASTA file containing reconstructed pseudo-genomes of the target isolates in a one-step process. License: unknown Vendor: Institut Pasteur Package: gensoft-bakta-1.11.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 269063 Depends: gensoft-deepsig-1.2.5, libc6, gensoft-pilercr-1.06, gensoft-blast+-2.17.0, gensoft-infernal-1.1.5, gensoft-hmmer-3.4, gensoft-amrfinder-4.0.23, zlib1g, gensoft-circos-0.69-9, libgcc-s1, gensoft-diamond-2.1.13, gensoft-aragorn-1.2.41, gensoft-adm-python-3.10.7, gensoft-trnascan-se-2.0.12, libstdc++6 Filename: pool/main/gensoft-bakta-1.11.4_1.0_amd64.deb Size: 85923024 MD5sum: 3f6625b8778c3e3788b1e3b5514c17d2 SHA1: 30c797bd3a9af88709666e0cad1a094b80e9a4ca SHA256: e373074ea2d9f616176dd8c20f6dc374719a19b9bc2196a3a88f02428d11bc00 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich and sORF-including annotations in machine-readable JSON & bioinformatics standard file formats for automatic downstream analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-bakta-1.5.0 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 95953 Depends: gensoft-diamond-2.0.15, gensoft-blast+-2.12.0, gensoft-hmmer-3.3.2, libgcc-s1, gensoft-infernal-1.1.4, gensoft-aragorn-1.2.38, gensoft-amrfinder-3.10.40, zlib1g, gensoft-prodigal-2.6.3.pp1, gensoft-trnascan-se-2.0.9, gensoft-pilercr-1.06, libc6, gensoft-adm-python-3.8.1, gensoft-deepsig-1.2.5 Filename: pool/main/gensoft-bakta-1.5.0_3.0_amd64.deb Size: 28053586 MD5sum: 1a232916b1e437a8cfa9beb5f9ae550f SHA1: 4972b4e6655b9d7b8b21c51d3f272d6034006db3 SHA256: feaec03cc48bacd4c1e50b73f118b1841154fc8b9aa4355a93c5da7b61b3e8a8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich and sORF-including annotations in machine-readable JSON & bioinformatics standard file formats for automatic downstream analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-bakta-1.8.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 185681 Depends: gensoft-diamond-2.1.9, gensoft-circos-0.69-9, libc6, zlib1g, gensoft-infernal-1.1.5, gensoft-pilercr-1.06, gensoft-amrfinder-3.12.8, gensoft-deepsig-1.2.5, gensoft-hmmer-3.4, gensoft-aragorn-1.2.41, gensoft-adm-python-3.8.1, gensoft-blast+-2.15.0, gensoft-trnascan-se-2.0.12, libgcc-s1 Filename: pool/main/gensoft-bakta-1.8.2_1.0_amd64.deb Size: 47571302 MD5sum: 9e87c90cbc916a4b5ef25d8eb28e0803 SHA1: 546c7c10f13ce89cd59a0ca4172ccc92ccdfdaf2 SHA256: 20fa796d44115fa2f9ae8bb6794b5f44fc5957e59cab6b5df990c87c2b9d8e82 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich and sORF-including annotations in machine-readable JSON & bioinformatics standard file formats for automatic downstream analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-bakta-1.9.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 167776 Depends: gensoft-blast+-2.15.0, gensoft-adm-python-3.8.1, gensoft-infernal-1.1.5, gensoft-hmmer-3.4, gensoft-pilercr-1.06, gensoft-diamond-2.1.9, gensoft-circos-0.69-9, libgcc-s1, gensoft-amrfinder-3.12.8, libc6, gensoft-trnascan-se-2.0.12, zlib1g, gensoft-deepsig-1.2.5, gensoft-aragorn-1.2.41 Filename: pool/main/gensoft-bakta-1.9.3_1.0_amd64.deb Size: 49805580 MD5sum: a91ae3ba4d50f0ee5965438ca861d21e SHA1: a0bcdef307e42691de66c56a52e4b66d8b3287fd SHA256: 41ceb126c6af2eb587389c6970e60bd7682d49b4bede193ed96ce62b24a4bcf0 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich and sORF-including annotations in machine-readable JSON & bioinformatics standard file formats for automatic downstream analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-bam-readcount-0.8.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1273 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-bam-readcount-0.8.0_1.0_amd64.deb Size: 428744 MD5sum: 8735c5ef9e3289b8c4a86e6973cc0666 SHA1: ceafc43bcbc720b3e5d9553a9ea10ce0239b8a03 SHA256: ad3ed8c5ff519ba2c8e916ae3be05bb0a99c6fd3029815a7d3f1a5101509ebc6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: generate metrics at single nucleotide positions from BAM files License: unknown Vendor: Institut Pasteur Package: gensoft-bam2fastq-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 512 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-bam2fastq-1.1.0_1.0_amd64.deb Size: 192744 MD5sum: 7dab597e6cae349f7ffcce64a44d29be SHA1: 5e1163ad5e80d10f650bf5d309bad040a260477a SHA256: e42b472b318f92b2143211c8db6c726b223f89246bd29bb83bb29435ca2f1639 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: extract raw sequences (with qualities) from BAM format. License: unknown Vendor: Institut Pasteur Package: gensoft-bam2poscount-2011-12-14 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2 Depends: mawk, gensoft-samtools-1.10 Filename: pool/main/gensoft-bam2poscount-2011-12-14_1.0_amd64.deb Size: 2832 MD5sum: 65df116e2a2b05f89032207d003948f5 SHA1: c9f41359bd72006798e03d99f225fc70c1bc4651 SHA256: 7aab6130bda1fbb6f50a3645eb2843a9673d0e939b3e85a73c99cebf8608d7c8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: no description provided License: unknown Vendor: Institut Pasteur Package: gensoft-bambamc-0.0.50 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1296 Depends: zlib1g, libc6 Filename: pool/main/gensoft-bambamc-0.0.50_1.0_amd64.deb Size: 386306 MD5sum: 52224b24412a40fdf020f69d670e48d6 SHA1: 9e69833e0ce0ee6e6f2d74234c9b57c379f29ea7 SHA256: 8ab965c9c2819b7eec2f8927efa8d9e7fbaa9372004bfa507bad356f81c42e2e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: lightweight C implementation of name collating BAM file input and BAM file output License: unknown Vendor: Institut Pasteur Package: gensoft-bamkit-0.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 39760 Depends: gensoft-adm-python-2.7.17, libc6 Filename: pool/main/gensoft-bamkit-0.0.1_1.0_amd64.deb Size: 12065612 MD5sum: d7a33361bfe20e63ee525cd4765ea4f7 SHA1: 3839a17558448225572e18548155bbe01e94b066 SHA256: 580cf34f7e6ad19fc0ef22d89ba787b43ac251131d7c3657c31f7d51a472261b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Tools for common BAM file manipulations License: unknown Vendor: Institut Pasteur Package: gensoft-bamm-1.7.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 79810 Depends: gensoft-samtools-1.10, gensoft-adm-python-2.7.17, gensoft-bwa-0.7.17, sed, grep, coreutils, zlib1g, libc6 Filename: pool/main/gensoft-bamm-1.7.3_2.0_amd64.deb Size: 22106730 MD5sum: befec04b4c1be44fd45589dd32505ed5 SHA1: 08e4c3fcdc2c1bd6e0f703a7f71b309b157c8f14 SHA256: 88a7621749ad80f81381b7c4f2b3a45e2c6b7094b08af19f9fb7e450366fd694 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: BamM is a c library, wrapped in python, that parses BAM files. The code is intended to provide a faster, more stable interface to parsing BAM files than PySam, but does not implement all/any of PySams features. License: unknown Vendor: Institut Pasteur Package: gensoft-bamstats-1.25 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2871 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-bamstats-1.25_1.0_amd64.deb Size: 2365094 MD5sum: 9f20fba1771cd01cbc9d6833cf48bad0 SHA1: cbc0ae950fd8182988ab070d90e450a18b91633d SHA256: 1e8e84e95cb5d5a6e13058675cd52eb27f6d433dc0619b45362aa0520eac6609 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: simple mapping statistics License: unknown Vendor: Institut Pasteur Package: gensoft-bamtools-2.5.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3107 Depends: zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-bamtools-2.5.1_1.0_amd64.deb Size: 954092 MD5sum: f8e52b026a844c4860f20f5946143816 SHA1: 02b35eeeeae044203f3a6cc3a18d5cd91fc319a8 SHA256: 30597e99bd49d6643d92270903f3677243e9bd919592e1cb59baaa2fce70301f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: end-user toolkit for handling BAM files. License: unknown Vendor: Institut Pasteur Package: gensoft-bamtools-2.5.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3206 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-bamtools-2.5.2_1.0_amd64.deb Size: 997038 MD5sum: fd373ababbf4c65ce065a12c9269fd60 SHA1: af486eb550668ffdc677f115b50c4ec540c17c60 SHA256: 38781d23302e0712e6fe032eaab14c6da02067063deac1b11ce2ea86e883e339 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: end-user toolkit for handling BAM files. License: unknown Vendor: Institut Pasteur Package: gensoft-bandage-0.8.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2574 Depends: gensoft-pcre2-10.34, gensoft-icu-65.1, gensoft-gcc-9.2.0, libc6, gensoft-glib-2.58.3, libbz2-1.0, gensoft-blast+-2.10.0, gensoft-qt-5.12.1, zlib1g, gensoft-libpng-1.6.37, gensoft-harfbuzz-2.6.4 Filename: pool/main/gensoft-bandage-0.8.1_2.0_amd64.deb Size: 1211878 MD5sum: 260c9b13a9145e4ebd2581829dc5738a SHA1: 8557d13f7289e6bc2856402647ac08408fa73414 SHA256: 7440e63bb5c7cd28a2d8e9c19b8394082631f21be102b5f3484f2ec5327c1908 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a Bioinformatics Application for Navigating De novo Assembly Graphs Easily License: unknown Vendor: Institut Pasteur Package: gensoft-barrnap-0.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3092 Depends: gensoft-hmmer-3.3, gensoft-bedtools-2.29.2, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-barrnap-0.9_1.0_amd64.deb Size: 697700 MD5sum: f5675fa44174ce829de44832bbadc171 SHA1: 8b972bb4f01e4ea403bc9ff3037ea477fc7754ed SHA256: 26ad732cc62f46a6526d47d56bf314d2b75df48522bdc91dd4915c57f93d0eb1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). License: unknown Vendor: Institut Pasteur Package: gensoft-bart-v1.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 287757 Depends: gensoft-adm-python-3.8.1, libc6, zlib1g, libbz2-1.0 Filename: pool/main/gensoft-bart-v1.1_1.0_amd64.deb Size: 89960022 MD5sum: d66eb82ffade8aab06b143fa64b824c0 SHA1: 08c8f83022aacfed81ab6f055f4e48231ec88903 SHA256: 2bb5f101a495366ddc09825fce67a8a25771f045e933401c9d5233c35f067ab3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: BART (Binding Analysis for Regulation of Transcription) is a bioinformatics tool for predicting functional transcription factors (TFs) that bind at genomic cis-regulatory regions to regulate gene expression in the human or mouse genomes, given a query gene set or a ChIP-seq dataset as input. BART leverages 3,485 human TF binding profiles and 3,055 mouse TF binding profiles from the public domain (collected in Cistrome Data Browser) to make the prediction. License: unknown Vendor: Institut Pasteur Package: gensoft-bart-v2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 385276 Depends: libc6, libgcc-s1, gensoft-adm-python-3.8.1, libbz2-1.0, libstdc++6, zlib1g Filename: pool/main/gensoft-bart-v2.0_1.0_amd64.deb Size: 120186182 MD5sum: 3cc48116da1c28616803a660969ccc07 SHA1: 7d173691c879cea11abe0323fa11d2fc95efc47a SHA256: 42ab74a01a60b1c033591dd6e132e7c7f69eb5b7b791a95adfd8af9bdb011d82 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: BART (Binding Analysis for Regulation of Transcription) is a bioinformatics tool for predicting functional transcription factors (TFs) that bind at genomic cis-regulatory regions to regulate gene expression in the human or mouse genomes, given a query gene set or a ChIP-seq dataset as input. BART leverages 3,485 human TF binding profiles and 3,055 mouse TF binding profiles from the public domain (collected in Cistrome Data Browser) to make the prediction. License: unknown Vendor: Institut Pasteur Package: gensoft-bax2bam-0.0.11 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 733 Depends: gensoft-pbcopper-1.6.0, gensoft-curl-7.68.0, gensoft-hdf5-1.10.6, gensoft-gcc-9.2.0, libbz2-1.0, libc6, zlib1g, libssl1.1, gensoft-htslib-1.10, gensoft-blasr-libcpp-5.3.4, gensoft-pbbam-1.0.7, gensoft-xz-5.2.4 Filename: pool/main/gensoft-bax2bam-0.0.11_1.0_amd64.deb Size: 259492 MD5sum: 989e877a6d93ddee682310e9e227bbad SHA1: d0a11fbffc30de4982b88438c5427936033da7c0 SHA256: 0d01f0adae846d36dd0515e1242ca4ba24fa6651af74d8bdc882012568d729ec Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Convert legacy PacBio Bax.H5, Bas.H5, and Ccs.H5 files to the new PacBio BAM format License: unknown Vendor: Institut Pasteur Package: gensoft-bayestraits-4.1.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3370 Depends: gensoft-gsl-2.6, gensoft-openblas-0.3.21, gensoft-gcc-9.2.0, libc6, gensoft-nlopt-2.6.1 Filename: pool/main/gensoft-bayestraits-4.1.2_1.0_amd64.deb Size: 2504278 MD5sum: 9fd098836c241dea338b4f9d81aebd30 SHA1: ce94024888acdde980fe2a1f55fe119cf2edeea6 SHA256: 7a6ab742ecdcb725d41a13be0f4066fda6fdf87f3cc93e26fa3a9b6904ff9cf8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: BayesTraits is a computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available. License: unknown Vendor: Institut Pasteur Package: gensoft-baypass-2.41 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 239649 Depends: libc6, gensoft-libxml2-2.9.10, gensoft-libiconv-1.16, zlib1g, gensoft-r-4.4.0, gensoft-xz-5.2.5, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-baypass-2.41_1.0_amd64.deb Size: 104387386 MD5sum: 41fefca01501aeca3209438577ce4a63 SHA1: f520f7f19ee90e85a75adb34a7f5f6daf571b130 SHA256: ff190488c297ae956c192c29be7a28fff60428722d9b6fb2af3f9ecdd156aa1e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a population genomics software which is primarily designed to identify genetic markers subjected to selection and/or associated with population-specific covariates License: unknown Vendor: Institut Pasteur Package: gensoft-bbmap-37.78 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 9591 Depends: gensoft-bzip2-1.0.6, gensoft-samtools-1.10, gensoft-pigz-2.4, libc6, gensoft-graalvm-ce-java11-20.0.0 Filename: pool/main/gensoft-bbmap-37.78_2.0_amd64.deb Size: 4829264 MD5sum: cd82f32a00bbd03d80341b175fee52bd SHA1: d61053c75d6bdc23eee05db2889f784cb978d612 SHA256: e95c59c561b077c983cb386ceb9aa3cf4957e220a09e083df90738de447c0eae Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A short read aligner, as well as various other bioinformatic tools. BBMap - Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. Very fast. BBNorm - Kmer-based error-correction and normalization tool. Dedupe - Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. Reformat - Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. BBDuk - Filters, trims, or masks reads with kmer matches to an artifact/contaminant file. ... and more License: unknown Vendor: Institut Pasteur Package: gensoft-bbmap-38.79 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 15227 Depends: gensoft-bzip2-1.0.6, libc6, gensoft-graalvm-ce-java11-20.0.0, gensoft-pigz-2.4, gensoft-samtools-1.10 Filename: pool/main/gensoft-bbmap-38.79_2.0_amd64.deb Size: 7719542 MD5sum: b431574412c93bb921cc9a7fd3362b21 SHA1: 8ed39092acd9709d71f253ad04aedee7b7034af2 SHA256: 30c21e760e032c051f26b26b4a2385a0384ef3a03a2d80cae987a0351b7c1ddf Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A short read aligner, as well as various other bioinformatic tools. BBMap - Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. Very fast. BBNorm - Kmer-based error-correction and normalization tool. Dedupe - Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. Reformat - Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. BBDuk - Filters, trims, or masks reads with kmer matches to an artifact/contaminant file. ... and more License: unknown Vendor: Institut Pasteur Package: gensoft-bbmap-38.91 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 15828 Depends: gensoft-bzip2-1.0.6, gensoft-samtools-1.10, libc6, gensoft-pigz-2.4, gensoft-graalvm-ce-java11-20.0.0 Filename: pool/main/gensoft-bbmap-38.91_2.0_amd64.deb Size: 8053694 MD5sum: 34c564a5a42f7eccbfbdb4b31cc4e7e7 SHA1: 1782cdaeee474d55256118ebd1611418def3696f SHA256: f48b0bf3c7e797ac915cd38199b67363c6f977c373f77a3114125c350a3b5fb3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A short read aligner, as well as various other bioinformatic tools. BBMap - Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. Very fast. BBNorm - Kmer-based error-correction and normalization tool. Dedupe - Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. Reformat - Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. BBDuk - Filters, trims, or masks reads with kmer matches to an artifact/contaminant file. ... and more License: unknown Vendor: Institut Pasteur Package: gensoft-bcalm-2.2.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 12073 Depends: libc6, gensoft-adm-python-3.8.1, gensoft-hdf5-1.8.18, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-bcalm-2.2.3_1.0_amd64.deb Size: 3380768 MD5sum: cf52620c3e1e34c771f371a02d17d23e SHA1: 29d9d51d528e6430331e44d60cdd4d4c3badc0ea SHA256: 9eecd0095a2dd11af9ab10d2d14c3291baacbf2ae8445e05f54c5e884f586d4a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: compacted de Bruijn graph construction in low memory License: unknown Vendor: Institut Pasteur Package: gensoft-bcl2fastq-2.20.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 113548 Depends: gensoft-gcc-9.2.0, libc6, zlib1g Filename: pool/main/gensoft-bcl2fastq-2.20.0_1.0_amd64.deb Size: 31694464 MD5sum: 30182664ba68ef17f34553e0316941ae SHA1: dfd491057b4b041e5282d8dc0d92f0901447a522 SHA256: a5c64b30e5a9c4c89bb659a83b7d05e37be40265eeac83195c8a8bb3de1c4e3d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool to handle bcl conversion and demultiplexing License: unknown Vendor: Institut Pasteur Package: gensoft-bdei-0.13 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 224166 Depends: gensoft-adm-python-3.10.7, gensoft-nlopt-2.6.1, zlib1g, libstdc++6, libgcc-s1, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-bdei-0.13_1.0_amd64.deb Size: 70297468 MD5sum: f0c7bb2962763f090e38b6e4cfe8e81b SHA1: 9a0be048612580b7959d4cf78d8d15659d5d8c64 SHA256: b516f04a3176d4ef5efe3aa759350e2b69f3f2bc0d5afd9f28e7520b9aa8a315 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: fast and accurate maximum likelihood estimation of Birth-Death Exposed-Infectious (BDEI) epidemiological model parameters from phylogenetic trees. License: unknown Vendor: Institut Pasteur Package: gensoft-beadarraycnv-1-0.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 107 Depends: gensoft-python-2.7.17, gensoft-penncnv-2009.08.27 Filename: pool/main/gensoft-beadarraycnv-1-0.3_1.0_amd64.deb Size: 19504 MD5sum: 4c5d79c20c66d35525d6c07b9d59813d SHA1: 267ceb4e08e4a3018233a85261dfde9203484b64 SHA256: 20cae3f51d2db67344a5c1146bc77ca7fb1fb71a01cfe4846491522b1f23b458 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: no description provided yet License: unknown Vendor: Institut Pasteur Package: gensoft-beagle-5.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2347 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-beagle-5.1_1.0_amd64.deb Size: 2194572 MD5sum: b40bd7fa5d91d4141938e85a57240dce SHA1: 84407c4b5f3f40b52376dcd0bec58a04d21a1457 SHA256: 6af8fcd46b0492fdce75d6de23a5ee39cf7eca4a8734f11db6aedb87ae6a6690 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a state of the art software package for analysis of large-scale genetic data sets with hundreds of thousands of markers genotyped on thousands of samples. License: unknown Vendor: Institut Pasteur Package: gensoft-beagle-lib-3.1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 10159 Depends: gensoft-gcc-9.2.0, libc6, gensoft-cuda-11.1 Filename: pool/main/gensoft-beagle-lib-3.1.2_1.0_amd64.deb Size: 1839844 MD5sum: 1086a0ab493d35f392c10f80f16e8508 SHA1: 6cff2def199302ecd6d3761bcda12fa4ec232bb5 SHA256: 724240c6981c3fbb09d4b60d9b99eb2ae4a4eac274b11ba1e3b94fb85063e838 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. License: unknown Vendor: Institut Pasteur Package: gensoft-beagle-lib-3.1.2-k40 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 10179 Depends: gensoft-cuda-11.1, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-beagle-lib-3.1.2-k40_1.0_amd64.deb Size: 1842714 MD5sum: fc59e2c42ede38a878340f64814bbf9b SHA1: a772f12308cdf705982601ff72375c148f335f33 SHA256: 45a4864dbe8bffaa54e3d78a5eab9e9d2e253995d2b1e91c1529758a8cfa5975 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. License: unknown Vendor: Institut Pasteur Package: gensoft-beagle-lib-4.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 19728 Depends: gensoft-gcc-9.2.0, libc6, gensoft-cuda-12.0 Filename: pool/main/gensoft-beagle-lib-4.0.1_1.0_amd64.deb Size: 4130148 MD5sum: bea23860cef66f4c226bff132fc4ff8c SHA1: c4981f48ccd05d9b764c97190b8d9c00eb109d6b SHA256: 42eef0fcf4f25f7a784243bd00584fcfa2f91d54ab7ba536dd1707ecd582772b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. License: unknown Vendor: Institut Pasteur Package: gensoft-beam-na Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 609 Depends: gensoft-gsl-2.6, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-beam-na_2.0_amd64.deb Size: 163622 MD5sum: 3bee114419a790b0792b8cdb013f7ce1 SHA1: 623240646abd78b6a53bdac3d6f80d367c6f6899 SHA256: 9e5a12fbe7f259caee7223ef34fad52d772b7c810820c50ee40900e9402e3182 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Bayesian Epistatis Association Mapping License: unknown Vendor: Institut Pasteur Package: gensoft-beast-mcmc-1.10.5-23570d1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 18663 Depends: gensoft-graalvm-ce-java8-20.0.0, libc6, gensoft-beagle-lib-3.1.2 Filename: pool/main/gensoft-beast-mcmc-1.10.5-23570d1_1.0_amd64.deb Size: 17251162 MD5sum: 3a3f5ac79b4a7e319462b85ab287f17a SHA1: 36e38ce139120268b5d3014562e66115c386936d SHA256: dfb5bf73ccabd557d36e13e7e123bc9a1694e48c929c10b7dd15fd3980e61832 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. 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BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. License: unknown Vendor: Institut Pasteur Package: gensoft-beast-mcmc-10.5.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 22947 Depends: gensoft-graalvm-ce-java23-23.0.1, gensoft-beagle-lib-4.0.1, libc6 Filename: pool/main/gensoft-beast-mcmc-10.5.0_1.0_amd64.deb Size: 21202826 MD5sum: 4bb310666ea0f2836b08a3c0efe643d1 SHA1: c890d85b3d5b7c0b0bea31dcb6b388434d442fb0 SHA256: e3471b08355d0877a341330443efdd415df526a79c8a456bfed51058bd16639f Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. 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License: unknown Vendor: Institut Pasteur Package: gensoft-beast-v1.10.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 30171 Depends: gensoft-beagle-lib-3.1.2, gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-beast-v1.10.4_2.0_amd64.deb Size: 17532558 MD5sum: 2c141c309405d77bd170d7183954b972 SHA1: aa97f898935db280efc473a65a53693b5546b303 SHA256: 44f678acc5767c0ff44ae1808e41a74d4f4a856b25d72f5028054a93866d36fc Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: BEAST (Bayesian evolutionary analysis sampling trees) is package for evolutionary inference from molecular sequences. 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License: unknown Vendor: Institut Pasteur Package: gensoft-beast-v2.7.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 256880 Depends: gensoft-beagle-lib-3.1.2 Filename: pool/main/gensoft-beast-v2.7.3_2.0_amd64.deb Size: 94771928 MD5sum: 6b94345d8fc573877038a2d61c45ae9e SHA1: 8cfc355590cca4681fea988ab19eb75e6b21e639 SHA256: 6bb2ab9f0c0e68bffc14ca53a078bbe8da33955ec6b8cdd7eb8360f89448aaff Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: BEAST (Bayesian evolutionary analysis sampling trees) is package for evolutionary inference from molecular sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-bedops-2.4.37 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 25813 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-bedops-2.4.37_1.0_amd64.deb Size: 9552302 MD5sum: 29a537491c227c9d9173a8a1e352c6b0 SHA1: 64707ab29c7991f702fd3ebfc961a1601c11f56c SHA256: d3cb4b38774500c9564c8d6e6fafdd621e2e87e1349ce2012cbf4b166c99deb5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a suite of tools to address common questions raised in genomic studies - mostly with regard to overlap and proximity relationships between data sets License: unknown Vendor: Institut Pasteur Package: gensoft-bedtools-2.27.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2144 Depends: gensoft-xz-5.2.5, zlib1g, gensoft-gcc-9.2.0, libc6, libbz2-1.0 Filename: pool/main/gensoft-bedtools-2.27.1_1.0_amd64.deb Size: 824766 MD5sum: 25b3042178c220d8d03f5c0dc691987b SHA1: 442abe263f2588ae8ebbc0051a079fce12529d48 SHA256: d2751ad0a98c5384b48a7700330ba02eef5a3979d3a04cf58fe95ff492512687 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Flexible suite of utilities for comparing genomic features License: unknown Vendor: Institut Pasteur Package: gensoft-bedtools-2.29.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 62185 Depends: zlib1g, libc6, libbz2-1.0, gensoft-gcc-9.2.0, gensoft-xz-5.2.4 Filename: pool/main/gensoft-bedtools-2.29.2_1.0_amd64.deb Size: 18719356 MD5sum: 8b87feea218d933f934d1500106719cb SHA1: 16f21f9b892a81ed6cffc43de234aea0dff63d53 SHA256: c3fa962aa0efbe004f0e3e7b23c0191d00834df639fa83f04474e7fb70385eaf Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Flexible suite of utilities for comparing genomic features License: unknown Vendor: Institut Pasteur Package: gensoft-bedtools-2.31.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 62158 Depends: gensoft-xz-5.2.5, zlib1g, gensoft-gcc-9.2.0, libc6, libbz2-1.0 Filename: pool/main/gensoft-bedtools-2.31.1_1.0_amd64.deb Size: 19030458 MD5sum: 5b503212d06eb0ba77bb257d82043542 SHA1: 718ff0a2f94b7ae71049976b7888f108d5a9f8e9 SHA256: a3fdd9de3aaa8d739d7a30e2f43c49a089dab7824a4ab366f707b28f0b1460fa Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Flexible suite of utilities for comparing genomic features License: unknown Vendor: Institut Pasteur Package: gensoft-benchmark-1.5.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4391 Filename: pool/main/gensoft-benchmark-1.5.2_1.0_amd64.deb Size: 671396 MD5sum: 45d34d2392672e2e3fc4c7acd93e5134 SHA1: 1c7ede65fb674faae7bf26e76aa8c2855749628e SHA256: 125c770d4d96086cb0fc595fd3ff9abacaa7fdee21e688bedd7cc4c597c00a02 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A microbenchmark support library License: unknown Vendor: Institut Pasteur Package: gensoft-bfactor-v1.04 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 253 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-bfactor-v1.04_1.0_amd64.deb Size: 134424 MD5sum: 11a0b9491b4f75230af6277878730309 SHA1: 000f6d5ff7eb90d8f3e7293f6749d55d1fc65f95 SHA256: f0e23b5858f3e992a75e3c4c5f6f756c31b1de414a64ee436c4e99dbe4578af6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: bfactor is a program for filtering 3D maps and applying B-factors License: unknown Vendor: Institut Pasteur Package: gensoft-bifrost-1.0.5 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 14285 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-bifrost-1.0.5_2.0_amd64.deb Size: 3606496 MD5sum: a1fb06c780272d9a684d6540dac4ff60 SHA1: f877e2372456c99222eeedd5d9a44a23c36ddb00 SHA256: 3f64c25e37ee98aba06bf2a55aa52147eae1300b9936ced4300e2c0132c67eb0 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in. License: unknown Vendor: Institut Pasteur Package: gensoft-bifrost-1.0.6.5 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 17164 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-bifrost-1.0.6.5_3.0_amd64.deb Size: 4708136 MD5sum: d77b8b6929d5b22a2f44425f3ebbfb65 SHA1: 910acd3c1ac9c147d00c42a6508995493a6fdc22 SHA256: 9f1e9970aac0de6647d182631e7f3180ff2451cd2b0115307f3b5b1c2e9941e3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in. License: unknown Vendor: Institut Pasteur Package: gensoft-bifrost-1.2.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 19217 Depends: zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-bifrost-1.2.0_1.0_amd64.deb Size: 5371556 MD5sum: c52d12f8116e0b98e55ee21a9f13980b SHA1: 6295bbbf815de3f492c45ee0f86cefae52404474 SHA256: e2f8521fa3aa09c75824652ad6f33c2ed0f8032ee27bec12ab24f5332c221369 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in. License: unknown Vendor: Institut Pasteur Package: gensoft-bifrost-1.3.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 18221 Depends: zlib1g, libc6, gensoft-gcc-11.3.0 Filename: pool/main/gensoft-bifrost-1.3.5_1.0_amd64.deb Size: 5312890 MD5sum: 3c2a4ecfaf2a38499ec7c55343e3630e SHA1: 736df2b8553e0b4aa4db5669b2757351b32b6116 SHA256: ce7154de181b03f3d2e0b5d72b46b63947450a96e9b8ad8f095beba2b74d5e39 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in. License: unknown Vendor: Institut Pasteur Package: gensoft-bin2mrc-1.00 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 268 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-bin2mrc-1.00_1.0_amd64.deb Size: 18542 MD5sum: c83e0b7ae05766f2d9d1ec89fbe59e2f SHA1: 4ef6cffecebfee0240a6287655e000c6012a458b SHA256: 2ed5cdd18ccb7e28c018d0b3d0a414d684712b120710f9ffa3a928276a4ef350 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program to convert images saved in FEI bin format into MRC/CCP4 format License: unknown Vendor: Institut Pasteur Package: gensoft-binning-0.9.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 46 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-binning-0.9.3_1.0_amd64.deb Size: 17776 MD5sum: 799f52c231ae26f989be1f48b52ba376 SHA1: 9d841246a1171ce165a07c7bf401e1c0c3ada0a4 SHA256: 7636d4d3ad450a829413266151de1ef5495e30e83d77122d278dffcd124c1e38 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Scripts required to calculate tetramer frequencies and create input files for ESOM License: unknown Vendor: Institut Pasteur Package: gensoft-binsanity-0.3.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 422348 Depends: gensoft-adm-python-3.8.1, gensoft-checkm-1.1.2 Filename: pool/main/gensoft-binsanity-0.3.6_1.0_amd64.deb Size: 129443948 MD5sum: 6b10300e0fb356dfa89de52cfc099462 SHA1: c9207416d39354ef4cd4db24cd1854d50316b904 SHA256: 5b5f286345687308da85927bf688de5b34991a188ae3a671e764ac58cd5db29f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation License: unknown Vendor: Institut Pasteur Package: gensoft-binutils-2.33.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 90088 Depends: libc6 Filename: pool/main/gensoft-binutils-2.33.1_1.0_amd64.deb Size: 21453814 MD5sum: 11144b4e37a23d99e337ae8ebfd86ab8 SHA1: fd47de629416310d57f565f1d3cbe50e55915c67 SHA256: 2cbb3e15b7dcc6afabf4a018ed63edb0709ad3a8217e9c753ce59166b1326406 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-bioawk-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 765 Depends: zlib1g, libc6 Filename: pool/main/gensoft-bioawk-1.0_1.0_amd64.deb Size: 259068 MD5sum: ffa5e7b13fed3ef0eeba882f505becc8 SHA1: 9d284c5804823ab771843543529ee77a80ec89be SHA256: 5b82679d55346bc7e119198f47c1eb15cdbf9d9ed40727bd197b83bd43fbec72 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Bioawk is an extension to Brian Kernighan awk, adding the support of several common biological data formats, including optionally gziped BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few built-in functions and an command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk is intended to behave exactly the same as the original BWK awk. 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BioEM is a publicly available software that enables the characterization of structural models with respect to individual electron microscopy images. License: unknown Vendor: Institut Pasteur Package: gensoft-biofilter-2.4.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 22374 Depends: libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-biofilter-2.4.2_1.0_amd64.deb Size: 8898642 MD5sum: f9c4f25ba84ef3d516e2a1ee036111f2 SHA1: 0de4e4f200956d9986581e2c3c9989811d949c95 SHA256: 942e8d1da5316c9401efac5c93cf5674cc55c1d0aa08ddd8a98a3f055911d918 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a software tool that provides a convenient single interface for accessing multiple publicly available human genetic data sources. License: unknown Vendor: Institut Pasteur Package: gensoft-biom-format-2.1.10 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 357526 Depends: libstdc++6, libgcc-s1, libc6, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-biom-format-2.1.10_1.0_amd64.deb Size: 109638612 MD5sum: 6c6f60ddee0baa56ae05e5674222a7c7 SHA1: 86656ec55f12619d5a8401a494f53df15d1cc4ab SHA256: 10113282c66e7990527172734f3cf56566fe4fb3cfc2a9078b4891b5eb4392fb Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project License: unknown Vendor: Institut Pasteur Package: gensoft-bionj-na Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 22 Depends: libc6 Filename: pool/main/gensoft-bionj-na_1.0_amd64.deb Size: 8290 MD5sum: e64067913b182d3669c22f8cdcf113ca SHA1: 60b876500ff0850c5d1111e75fb5e0dfc01e67c4 SHA256: a96016dc8eaf00f4fc4c2e94dbd316f2363f96b9647fbbc3d15004b69d55dffa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A distance based phylogeny reconstruction algorithm, which is well suited for distances estimated from DNA or protein sequences License: unknown Vendor: Institut Pasteur Package: gensoft-bismark-v0.22.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 19472 Depends: gensoft-adm-perl-5.30.1, gensoft-xz-5.2.4, gensoft-bowtie2-2.1.0, gensoft-libjpeg-turbo-2.0.4, libbz2-1.0, libc6, gensoft-libtiff-4.1.0, gensoft-hisat2-2.1.0, gensoft-fontconfig-2.13.91, gensoft-freetype-2.10.1, gensoft-xorg-libs-1.1, gensoft-samtools-1.10, gensoft-libpng-1.6.37, gensoft-libgd-gd-2.2.5, zlib1g, gensoft-expat-2.2.9 Filename: pool/main/gensoft-bismark-v0.22.3_1.0_amd64.deb Size: 5558736 MD5sum: b457071712ae279b6204194c978579aa SHA1: 7b28e8a18abe832d7d57db739652e8515df74045 SHA256: cc7cb2d65de35d77e3d6db553b0fcbdc7d05e097df5401cf084fe80a754f0c48 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. License: unknown Vendor: Institut Pasteur Package: gensoft-bison-3.5.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4413 Depends: libc6 Filename: pool/main/gensoft-bison-3.5.1_1.0_amd64.deb Size: 1428572 MD5sum: d1cd5c9d96ca40becbe11356c85f09c9 SHA1: 7a5bf03c05d72798c47295d8800e89bff6dfb640 SHA256: 12df19fd82a4185f2d45389a8dc9ca93e7a680a8cad52c03770fd21ce2865654 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-blas-3.8.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1450 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-blas-3.8.0_1.0_amd64.deb Size: 600070 MD5sum: 88a4edfb0444b9f6175088bfb3f5e4c3 SHA1: a7faad09eaedbbbbc98dd39cbfc835a143654d5b SHA256: fc8d8c8e29bde3d7f8b8972f0686a7f648c75f08fd2ad47067985ccf8ae8c865 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations. License: unknown Vendor: Institut Pasteur Package: gensoft-blasr-5.3.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2112 Depends: gensoft-hdf5-1.10.6, libbz2-1.0, gensoft-pbbam-1.0.7, gensoft-pbcopper-1.6.0, gensoft-blasr-libcpp-5.3.4, libc6, libssl1.1, gensoft-zlib-1.2.11, gensoft-xz-5.2.4, gensoft-gcc-9.2.0, gensoft-htslib-1.10, gensoft-curl-7.68.0, zlib1g Filename: pool/main/gensoft-blasr-5.3.3_1.0_amd64.deb Size: 778858 MD5sum: 0bf822653a820dbb05558cbbbadc4a4f SHA1: 4b7cd0487ea9d43b7832d6c6ac6ed70433ee73ac SHA256: 892fd5e8c35f85262459cdbbb47ae8cb2313a8dd235e277bd9c47855d6046069 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The PacBio long read aligner License: unknown Vendor: Institut Pasteur Package: gensoft-blasr-libcpp-5.3.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 14722 Depends: gensoft-curl-7.68.0, gensoft-boost-1.72.0, gensoft-htslib-1.10, gensoft-xz-5.2.4, gensoft-pbcopper-1.6.0, gensoft-hdf5-1.10.6, gensoft-gcc-9.2.0, gensoft-pbbam-1.0.7 Filename: pool/main/gensoft-blasr-libcpp-5.3.4_1.0_amd64.deb Size: 4967180 MD5sum: e541b79e22277d1898895397ef2b19e2 SHA1: a50d0512b91307d4d45e76154a51f36f87975a95 SHA256: 6d270dc3a76bad0e404130391335988cb68b78fbd4e83bb63267aa72d6b2977c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment License: unknown Vendor: Institut Pasteur Package: gensoft-blast+-2.10.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 936830 Depends: libc6, libbz2-1.0, gensoft-adm-perl-5.30.1, gensoft-adm-python-2.7.17, gensoft-adm-python-3.8.1, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-blast+-2.10.0_1.0_amd64.deb Size: 309029026 MD5sum: 334b4ece7f4f3ac33942357b98b5af36 SHA1: 47ffbe9b211082a81e3a83192471e8e2c31b37de SHA256: e1cfc88000abb9f94bb196595c006d28ea7778fd35693b5ac08331e586b2b3cb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. 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License: unknown Vendor: Institut Pasteur Package: gensoft-cap3-02-10-15 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 156 Filename: pool/main/gensoft-cap3-02-10-15_1.0_amd64.deb Size: 68574 MD5sum: c11031350003f82d0eebcaa106773c45 SHA1: de732d3cd7110c12cbae0eaf1970ef1890ac318d SHA256: 0b28cf597c496c7a564b80b94051582040bec761c7adbfc0fd31bde14b324a48 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: DNA sequence assembly program License: unknown Vendor: Institut Pasteur Package: gensoft-caper-2.1.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 502355 Depends: gensoft-graalvm-ce-java11-20.0.0, gensoft-singularity-3.8.3, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-caper-2.1.2_1.0_amd64.deb Size: 153809364 MD5sum: 51fd075d71c091374631aa8488c654f1 SHA1: a969a8c0c2d30baa04cea06dc1695fd61060ad95 SHA256: 0cc527f1d11699f7beb6bb323a1008ce8220c2b2405c71080fba28f5a2ce726c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Caper (Cromwell Assisted Pipeline ExecutoR) is a wrapper Python package for Cromwell. License: unknown Vendor: Institut Pasteur Package: gensoft-capmq-0.5 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 59 Depends: zlib1g, libssl1.1, gensoft-curl-7.68.0, libc6, gensoft-xz-5.2.5, gensoft-htslib-1.9, libbz2-1.0 Filename: pool/main/gensoft-capmq-0.5_1.0_amd64.deb Size: 22312 MD5sum: 4acb28786b212416aa5b9f90bf9e2e94 SHA1: e88eb3d66c54c62bb3a0516960f3a85b653275ea SHA256: b3110ee966623df56094d19e730ad44a3f8b49ff9a9d3b15b5acb33622748856 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Cap the mapping quality in a given alignment file License: unknown Vendor: Institut Pasteur Package: gensoft-capnproto-0.7.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 19120 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-capnproto-0.7.0_1.0_amd64.deb Size: 4450056 MD5sum: 48a163a11d81f94ffecf11a694b51600 SHA1: 21103cb79643d84116710a442f56832942616d51 SHA256: 24ea111e7c8dde29a45ce73fcfc2eaf6b1c869f67ed99e100716b1381f21878d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fast data interchange format and capability-based RPC system License: unknown Vendor: Institut Pasteur Package: gensoft-casper-0.8.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 94 Depends: libc6, gensoft-gcc-9.2.0, gensoft-jellyfish-2.3.0 Filename: pool/main/gensoft-casper-0.8.2_1.0_amd64.deb Size: 36972 MD5sum: 826b15b776e56d976d6cfb4292ae69d5 SHA1: 43338ce1014588378bdf5bb3e6dc24c3aaded7fb SHA256: 8356ce25f552a5ef67670b12a1c41d0b12ba53db1221eaa179c3e762a2e5d083 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads License: unknown Vendor: Institut Pasteur Package: gensoft-casper-0.8.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 92 Depends: gensoft-gcc-9.2.0, libc6, gensoft-jellyfish-2.3.0 Filename: pool/main/gensoft-casper-0.8.3_1.0_amd64.deb Size: 37706 MD5sum: a7309b9d49747e825020ec5e4dd22ec2 SHA1: 5aa2cc17cbdb17d21bff21f6065b34ee408f7606 SHA256: a7e6be0e90c152488ee161ec57983804076a82a48f5efe6660f4fb0580e6723a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads License: unknown Vendor: Institut Pasteur Package: gensoft-cat-pack-6.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 8363 Depends: gensoft-diamond-2.1.9, gensoft-bwa-0.7.18, gensoft-samtools-1.21, libc6, gensoft-adm-python-3.8.1, gensoft-prodigal-2.6.3.pp1 Filename: pool/main/gensoft-cat-pack-6.0.1_1.0_amd64.deb Size: 2332962 MD5sum: 6dbd83619553584db0ac8f12f7d32953 SHA1: 973542206e99e99ae5a83ef29b788a41c0b777d4 SHA256: 115c4a721626382816c5514808c918337238fb7eca479f0697a3cb19e58ea882 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: CAT/BAT/RAT - tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes License: unknown Vendor: Institut Pasteur Package: gensoft-catfasta2phyml-1.2.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 21 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-catfasta2phyml-1.2.1_1.0_amd64.deb Size: 8272 MD5sum: 86faf28ad45ca8eab91272d39066ff8d SHA1: 64a74c665e55a00c6eb33bc3481babd06e2fb738 SHA256: 04bf78ab981d15144c7e0e16d5500bbae63f3aeb2cbe39d26aedee5f3ac01c22 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file License: unknown Vendor: Institut Pasteur Package: gensoft-cath-tools-0.16.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 55981 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-cath-tools-0.16.2_1.0_amd64.deb Size: 17304254 MD5sum: fd403d99392aee6ceee554cedeab6799 SHA1: 868a09ced146bad4ed4cc9c5e189fd2195e0a250 SHA256: efa1e01b0ab9d0b3004f8328c9bd71a8a3d989fa872da0093f41bd03cd95dca7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Protein structure comparison tools such as SSAP and SNAP. License: unknown Vendor: Institut Pasteur Package: gensoft-cayman-0.10.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 252174 Depends: zlib1g, gensoft-adm-python-3.8.1, libgcc-s1, libc6, libstdc++6, gawk, gensoft-bwa-0.7.18 Filename: pool/main/gensoft-cayman-0.10.1_1.0_amd64.deb Size: 77141294 MD5sum: 9d24b2e1dd9b7aafc7276c3ac30a9b2f SHA1: e4db3017f9253549e9971eef4f8aee1eee6c8dd3 SHA256: 5e30843d92752f809437f32cbb491bdee9d47d97e23da85b8d4ba1a2e8cdf644 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Cayman (Carbohydrate active enzymes profiling of metagenomes) is a command-line profiling tool for profiling CAZyme abundances in metagenomic datasets License: unknown Vendor: Institut Pasteur Package: gensoft-cblas-3.8.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 435 Filename: pool/main/gensoft-cblas-3.8.0_1.0_amd64.deb Size: 43456 MD5sum: a63528550baa6da5ae712d6ae3504e40 SHA1: 80fc835e46bd0db913f82ae432d1a7afac7a6444 SHA256: a769a433262a1ce910e47905b64fc331c84289f1164dce541efec32cdedd76a4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: C interface to Legacy BLAS (Basic Linear Algebra Subprograms). License: unknown Vendor: Institut Pasteur Package: gensoft-ccat-3.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 69 Depends: libc6 Filename: pool/main/gensoft-ccat-3.0_1.0_amd64.deb Size: 20976 MD5sum: c73ba839b5e32c4b955a8a3185c431cb SHA1: b61f761c8ef07f1473e48f48fd4548d1123707bc SHA256: eba079659e6c819b0af97f817773cbc8942b8ba934b7ca1fbfc291849a0d13c2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A Signal-Noise model for significance analysis of ChIP-seq with Negative Control License: unknown Vendor: Institut Pasteur Package: gensoft-ccs-6.3.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 7873 Depends: libc6 Filename: pool/main/gensoft-ccs-6.3.0_1.0_amd64.deb Size: 3730524 MD5sum: 332d5ee6ce67bae3cc3fcf92faf8a601 SHA1: 5748606b5ffa13b6640f1d354b4b8dfa23373df2 SHA256: 2dca3d035cd4abc566c354cf4384fc14b933b67aafec040f59238c4a3238b844 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads) License: unknown Vendor: Institut Pasteur Package: gensoft-cd-hit-4.8.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1959 Depends: libc6, gensoft-gcc-9.2.0, zlib1g, gensoft-blast+-2.10.0 Filename: pool/main/gensoft-cd-hit-4.8.1_1.0_amd64.deb Size: 947454 MD5sum: 0c992f2ffee6346d2be3d75404a6f212 SHA1: 658799f8214fa0689cb91c66f9e01218fb1c8c0f SHA256: dcab5e42a7fdae184710977d07679c0d7ef999867b1abfe093ebd5ffe054e6b9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program for clustering DNA/protein sequence database at high identity with tolerance. License: unknown Vendor: Institut Pasteur Package: gensoft-cdbfasta-0.99 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 198 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-cdbfasta-0.99_1.0_amd64.deb Size: 87938 MD5sum: a982a224c6ce953ee983c9e31892bb21 SHA1: d43d0708f784c5a66ae807331bf22aa337980b37 SHA256: e4986a1359554de811c32fa1fff9573de18f7c75673b34f80ccbc12176d03135 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CDB (Constant DataBase) indexing and retrieval tools for FASTA files License: unknown Vendor: Institut Pasteur Package: gensoft-ceas-1.0.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 7472 Depends: gensoft-sqlite-3.31.0, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-ceas-1.0.2_2.0_amd64.deb Size: 2221830 MD5sum: 286d40acc16d6114532a79a34fad700c SHA1: c7f647ce70192273c2e5af6e364b30a730525a57 SHA256: e661fbf33259b6f1dcc5fadba869ae98e1f841da91b10aed8e010c8eb9aaa84a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: CEAS (Cis-regulatory Element Annotation System), provides statistics on ChIP enrichment at important genome features such as specific chromosome, promoters, gene bodies, or exons, and infers genes most likely to be regulated by a binding factor License: unknown Vendor: Institut Pasteur Package: gensoft-cegma-v2.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 76302 Depends: gensoft-adm-perl-5.30.1, gensoft-hmmer-3.3, gensoft-geneid-v1.4.4, sed, gensoft-blast+-2.10.0, gensoft-wise2-2.4.1 Filename: pool/main/gensoft-cegma-v2.5_1.0_amd64.deb Size: 12308890 MD5sum: 00b1f2fe4410a6b76c9fc9361a45cfb7 SHA1: 9b7563b44bdf3e57cd53945bbb7f4d1745d061f7 SHA256: d0e7c688e7049cc2cde123c3237699d12fb2a2773280e7dcf52a218dcab2cbac Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: (Core Eukaryotic Genes Mapping Approach) is a pipeline for building a set of high reliable set of gene annotations in virtually any eukaryotic genome. The strategy relies on a simple fact some highly conserved proteins are encoded in essentially all eukaryotic genomes. We use the KOGs database to build a set of these highly conserved ubiquitous proteins. We define a set of 458 core proteins, and the protocol, CEGMA, to find orthologs of the core proteins in new genomes and to determine their exon-intron structures. License: unknown Vendor: Institut Pasteur Package: gensoft-celera-assembler-8.3rc2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 65309 Depends: zlib1g, gensoft-adm-perl-5.30.1, gensoft-graalvm-ce-java8-20.0.0, tcsh, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-celera-assembler-8.3rc2_1.0_amd64.deb Size: 33103722 MD5sum: bb2a1804d41ba9fa04500566735c61e3 SHA1: 3f845380b1c58136d622808f179e3a57ac0d3312 SHA256: 443e5c4a4c9b7bb50a7b17ad54cfaf7c53be0951441aef2197da7f91b885a0ec Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Celera Assembler is a de novo whole-genome shotgun (WGS) DNA sequence assembler. It reconstructs long sequences of genomic DNA from fragmentary data produced by whole-genome shotgun sequencing License: unknown Vendor: Institut Pasteur Package: gensoft-cellpose-3.0.10 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 8069598 Depends: gensoft-apptainer-1.3.2 Filename: pool/main/gensoft-cellpose-3.0.10_1.0_amd64.deb Size: 8246140340 MD5sum: 4adc969672ecff488a33f5eb854168cb SHA1: a6168072d896409de646ad848d9144169e1b5550 SHA256: 0a489aa0b0bbbc4ede6c1feec19d6d84d77285662b3e58cabc542c98a5573d87 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A generalist algorithm for cell and nucleus segmentation that can be optimized for your own data and perform image restoration License: unknown Vendor: Institut Pasteur Package: gensoft-cellpose-3.1.1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 7906351 Depends: libpcre2-8-0, libkeyutils1, libkrb5-3, libxext6, libmount1, libk5crypto3, libx11-6, libxau6, libpcre3, libxcb1, libzstd1, libkrb5support0, libgomp1, gensoft-adm-python-3.9.16, libgssapi-krb5-2, zlib1g, libselinux1, libxdmcp6, libstdc++6 Filename: pool/main/gensoft-cellpose-3.1.1.1_1.0_amd64.deb Size: 4364538014 MD5sum: 987668ca8bfd43c29b92713174f1c2dd SHA1: be61cd5cb0ccc8ae9d2c1a284e4fa841635273f2 SHA256: 56c6ce71b5923e2ca6902ecb8770c1a286181a48362b715e7132650c5ca18865 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A generalist algorithm for cell and nucleus segmentation that can be optimized for your own data and perform image restoration License: unknown Vendor: Institut Pasteur Package: gensoft-cellranger-5.0.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2237464 Depends: gensoft-bcl2fastq-2.20.0 Filename: pool/main/gensoft-cellranger-5.0.1_2.0_amd64.deb Size: 1003089566 MD5sum: 1e520daca8ad75793346fb53d1657465 SHA1: eb537eb65e3325f2a6b5073fa6af49a0ea77fdd9 SHA256: 4d7de4d9e1c420b8fa2a6f59199c742cbd9ca0a3b341c1f96eb43d3cf2b7bdbf Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-cellranger-6.0.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2497184 Depends: gensoft-bcl2fastq-2.20.0 Filename: pool/main/gensoft-cellranger-6.0.1_2.0_amd64.deb Size: 1091351428 MD5sum: a098e6ab23aedd629e8b2e57d20e2eb2 SHA1: 93e6eed5f9dc5b2e90725906fa9125c52689dc2b SHA256: 02e7495897522ecdfcd3b7e023f0649d87ba48371b1c128e116dbacacfdae9e9 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-cellranger-7.1.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1857957 Depends: libc6, gensoft-bcl2fastq-2.20.0, debianutils, libgcc-s1 Filename: pool/main/gensoft-cellranger-7.1.0_2.0_amd64.deb Size: 675559528 MD5sum: 08bb3804c5d7af77fa2dc5ba3e3aab12 SHA1: e8cf8742b8959a4e9b1352f63424ddf5aa6a789e SHA256: 38849abc1cb3255df68d309cd21a69e848af5a8234753114ac85f713b2f2709f Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-cellranger-7.2.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1902344 Depends: gensoft-bcl2fastq-2.20.0, libgcc-s1, debianutils, libc6 Filename: pool/main/gensoft-cellranger-7.2.0_2.0_amd64.deb Size: 690353358 MD5sum: d2783871fc51e08583aa115d98ce24b3 SHA1: 40ec86fc47671528ff34ffafb7994ca23cd3db2b SHA256: a780e46f77dafd0d03e0460c9d7d77d9f3e1e862f5d3af8a51a3d8e5f3d83e28 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-cellranger-8.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1960026 Depends: libc6, gensoft-bcl2fastq-2.20.0, debianutils, libgcc-s1 Filename: pool/main/gensoft-cellranger-8.0.1_1.0_amd64.deb Size: 738537970 MD5sum: 9b1dd2de1328e067db0dbdc8209cc5f2 SHA1: 713df757990dd37c15ceb7ab6465f387e49f5f60 SHA256: 83a91e5a7dd94118fe280c56e8d0cc1c08fa38dba1a8338a7fc344f8d63176eb Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-cellranger-9.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2306042 Depends: libc6, gensoft-bcl2fastq-2.20.0, libgcc-s1, debianutils Filename: pool/main/gensoft-cellranger-9.0.0_1.0_amd64.deb Size: 851033982 MD5sum: 7d6a33c7439a56510c928387b982e631 SHA1: c02b943e65966515b1dec4fd0b04a3c6ae61d3ff SHA256: 1428dc72036d4bb3e5a964581026e08638838350f653311ca5f7047a5ca74933 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-cellranger-arc-2.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1938784 Filename: pool/main/gensoft-cellranger-arc-2.0.0_1.0_amd64.deb Size: 733897520 MD5sum: c4738b9af0fbae7004a5fcbc2a7f13ca SHA1: bba2f322ae132d0e898dfa281665d961bff8b630 SHA256: 38a50ccc66aae48a392808bc3d20ac7c51137c864bd53e0705ed465905b1000f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a set of analysis pipelines that process Chromium Single Cell Multiome ATAC + Gene Expression sequencing data to generate a variety of analyses pertaining to gene expression, chromatin accessibility and their linkage. License: unknown Vendor: Institut Pasteur Package: gensoft-cellranger-arc-2.0.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1941374 Filename: pool/main/gensoft-cellranger-arc-2.0.2_1.0_amd64.deb Size: 734965716 MD5sum: 03d46e5165fbb7f547b7dcde3d26c730 SHA1: 2e50919736586921294474cbea54be48cbc422de SHA256: bc948656582d4fc318b21b98ca7dd28d696076af5e157cc71c90e9863a6c3024 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a set of analysis pipelines that process Chromium Single Cell Multiome ATAC + Gene Expression sequencing data to generate a variety of analyses pertaining to gene expression, chromatin accessibility and their linkage. License: unknown Vendor: Institut Pasteur Package: gensoft-cellranger-atac-2.1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1523726 Filename: pool/main/gensoft-cellranger-atac-2.1.0_1.0_amd64.deb Size: 558286810 MD5sum: 074aa11dd6ad2a3c64c41c4303e7ef33 SHA1: 2c5cad68a7da1fda3e22ec0cfb5aece0e63016c2 SHA256: b8c7e3a9e57c04b1d9484cb1af70495a23c10c9c14fa10952eda27ce319ed15c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a set of analysis pipelines that process Chromium Single Cell ATAC data. Cell Ranger ATAC includes four pipelines relevant to Single Cell ATAC experiments License: unknown Vendor: Institut Pasteur Package: gensoft-cellsnp-lite-1.2.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 407 Depends: zlib1g, gensoft-htslib-1.21, gensoft-xz-5.2.5, libbz2-1.0, gensoft-curl-7.68.0, libc6 Filename: pool/main/gensoft-cellsnp-lite-1.2.3_1.0_amd64.deb Size: 153498 MD5sum: 5b7af40f2e35d04deda80ae4cadfd870 SHA1: 6249b13b0ba12fa11ac018f62e41305b742b6f84 SHA256: 294ec2c2b8fd1158e450489a87dd0693093ee15c5ccbb50e0bbbe6a8b006e945 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Efficient genotyping bi-allelic SNPs on single cells License: unknown Vendor: Institut Pasteur Package: gensoft-cenote-taker2-2.1.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 218610 Depends: gensoft-phanotate-1.5.0, gensoft-seqkit-2.3.1, gensoft-hhsuite-3.3.0, gensoft-bbmap-38.91, gensoft-bioawk-1.0, gensoft-bowtie2-2.3.5.1, gensoft-adm-python-3.6.15, gensoft-adm-perl-5.30.1, libstdc++6, zlib1g, gensoft-hmmer-3.3.2, gensoft-cmake-3.17.2, gensoft-blast+-2.13.0, gensoft-xz-5.2.5, libgcc-s1, libbz2-1.0, gensoft-samtools-1.4, gensoft-prodigal-2.6.3.pp1, gensoft-trnascan-se-2.0.9, gensoft-last-1389, gensoft-edirect-18.2, gensoft-tbb-2020.1, gensoft-bedtools-2.29.2, gensoft-ncbitools-20170106, libssl1.1, libc6 Filename: pool/main/gensoft-cenote-taker2-2.1.5_1.0_amd64.deb Size: 71369262 MD5sum: 6913e0c68886358e228481c8bac010a1 SHA1: f142b3009f8205d6974421614eec0925b9d6c58a SHA256: ddb079b76eabe6dcd9aaf7899ceee108b0e6d02245df7460bd079db99802fd63 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Cenote-Taker 2 is a dual function bioinformatics tool. On the one hand, Cenote-Taker 2 can discover/predict virus sequences from any kind of genome or metagenomic assembly. On the other hand, virus sequences/genomes (perhaps predicted by another tool?) can be annotated with a variety of sequences features, genes, and taxonomy. Either the discovery or the the annotation module can be used independently. License: unknown Vendor: Institut Pasteur Package: gensoft-centrifuge-1.0.4-beta Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 19335 Depends: gensoft-adm-perl-5.30.1, libc6, gensoft-blast+-2.10.0, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-centrifuge-1.0.4-beta_1.0_amd64.deb Size: 5569988 MD5sum: 99da75e8dc4d13afef7375a0d7cfc764 SHA1: 5faccda399a43a5701c118e5a5ed50ede3ac3b40 SHA256: 6252e34c1f4430f1b3a9d6d2e6887d701f32af8e05f3658f2d23cb42aa82046b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a novel microbial classification engine that enables rapid, accurate and sensitive labeling of reads and quantification of species on desktop computers. License: unknown Vendor: Institut Pasteur Package: gensoft-centrifuge-1.0.4.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 19335 Depends: gensoft-sqlite-3.31.0, gensoft-adm-perl-5.30.1, gensoft-adm-python-2.7.17, libc6, gensoft-gcc-9.2.0, gensoft-blast+-2.16.0 Filename: pool/main/gensoft-centrifuge-1.0.4.1_1.0_amd64.deb Size: 5572240 MD5sum: f5a1ba2ce2384febbe0d5c9e0cc9f140 SHA1: 78b3b9ec549dfa4483519a3422cc469b89ee058f SHA256: e5d10ac9c9fd9565e637fa3d10682ed22e69dec66645c1999e5f0480e54782ff Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a novel microbial classification engine that enables rapid, accurate and sensitive labeling of reads and quantification of species on desktop computers. License: unknown Vendor: Institut Pasteur Package: gensoft-cereal-1.3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1372 Filename: pool/main/gensoft-cereal-1.3.0_1.0_amd64.deb Size: 251598 MD5sum: 3f34e38307793bfd993a6a13db697089 SHA1: 36fa4f280fc236a043f85f705fd80ce6daba7926 SHA256: 38254e8e2c093fd88527c1766d977fbce3e098d80b102a79ff0629c34c5c6e07 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: cereal is a header-only C++11 serialization library License: unknown Vendor: Institut Pasteur Package: gensoft-cern-root-v6.20.04 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 574027 Depends: gensoft-cern-root-v6.20.04, gensoft-zlib-1.2.11, gensoft-libpng-1.6.37, gensoft-zstd-1.4.4, libbz2-1.0, gensoft-tbb-2020.1, gensoft-mesa-19.0.8, libkeyutils1, gensoft-gsl-2.5, gensoft-fftw-3.3.8, gensoft-xorg-libs-1.1, gensoft-pcre-8.43, gensoft-gcc-9.2.0, gensoft-lapack-3.9.0, libkrb5support0, gensoft-libtiff-4.1.0, libc6, gensoft-adm-python-2.7.17, gensoft-libuuid-1.0.3, gensoft-glu-9.0.1, gensoft-expat-2.2.9, gensoft-adm-perl-5.30.1, libkrb5-3, gensoft-libdrm-2.4.100, gensoft-fontconfig-2.13.91, gensoft-libiconv-1.16, gensoft-xz-5.2.4, gensoft-giflib-5.2.1, gensoft-libxml2-2.9.10, libcomerr2, libssl1.1, gensoft-lz4-1.9.2, gensoft-mysql-client-8.0.19, gensoft-libjpeg-turbo-2.0.4, gensoft-sqlite-3.31.0, libk5crypto3, gensoft-freetype-2.10.1 Filename: pool/main/gensoft-cern-root-v6.20.04_1.0_amd64.deb Size: 236573862 MD5sum: f472a832590e1a7bdd07d55d222b85e7 SHA1: 62dd439b8435b7a582b65d62a1beab12fa1727f8 SHA256: c38baba5b1fde06d358a20e5b852a25fdb0ebfdf35c24c332b9dd5e709d88369 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a framework for data processing License: unknown Vendor: Institut Pasteur Package: gensoft-cgal-5.0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 34663 Depends: gensoft-mpfr-4.0.2, gensoft-gmp-6.2.0, gensoft-boost-1.72.0 Filename: pool/main/gensoft-cgal-5.0.2_1.0_amd64.deb Size: 6344154 MD5sum: 2a0327bb889f81a1a79120cbe1f16a2f SHA1: 31ff3a0abec6c7431c932ebe05a0b289d896154f SHA256: 34c113b850e5b3064a1134c8ef7813124bbccfe135456b8502dea720deb885f6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CGAL is a software project that provides easy access to efficient and reliable geometric algorithms in the form of a C++ library License: unknown Vendor: Institut Pasteur Package: gensoft-cgatools-1.8.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5010 Filename: pool/main/gensoft-cgatools-1.8.0.1_1.0_amd64.deb Size: 2004430 MD5sum: 027e1527bd7a57c3b64b0cd646ec024a SHA1: ef1940677e3cdf0edf4fdd8f40c6644a661d19e6 SHA256: 505f79738f1a477cb7b6e070dcb43266999d8cc08085a31f5e407441333b2211 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: tools for downstream analysis of Complete Genomics data. License: unknown Vendor: Institut Pasteur Package: gensoft-cgcat-20140218 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 674 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-cgcat-20140218_1.0_amd64.deb Size: 643220 MD5sum: 88945c3866e12472c0739e549553dbce SHA1: 69d694daae0cabda68997710a961c7a81dd5302b SHA256: c5cd7f35a0b3e4a47f6b9091f47b85b458140c23d0611bf14fd48aa5a9b0e8ee Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This is a toolsuite for ordering and orienting contigs in a comparative genomic fashion. License: unknown Vendor: Institut Pasteur Package: gensoft-cgl-0.60.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1543 Depends: gensoft-osi-0.108.6, gensoft-coinutils-2.11.4, libc6, gensoft-gcc-9.2.0, gensoft-clp-1.17.6, gensoft-lapack-3.9.0 Filename: pool/main/gensoft-cgl-0.60.3_1.0_amd64.deb Size: 641652 MD5sum: 410fbaa0d5960edecfc1ffbef9cecf11 SHA1: 8d72ed9ca4d6651dcccc5247b06d27b6154bd6a1 SHA256: 8693c760c365aa995cba4885cd465716b80d9955e122237a0a3313cfd92a96a1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts License: unknown Vendor: Institut Pasteur Package: gensoft-cgmlst-dists-0.4.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 20 Depends: libc6 Filename: pool/main/gensoft-cgmlst-dists-0.4.0_1.0_amd64.deb Size: 8568 MD5sum: 75281a29792025dc6361450e55857fb6 SHA1: c710e30b65d1e36abb8aecfe31461b7ea86c4fff SHA256: 11fcfac96efe4e9ed252d8ea38af0dbe3c69f83c014dc519ef0430c1d8ec4618 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Calculate distance matrix from ChewBBACA cgMLST allele call tables License: unknown Vendor: Institut Pasteur Package: gensoft-charm-6.10.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 46238 Depends: gensoft-gcc-9.2.0 Filename: pool/main/gensoft-charm-6.10.2_1.0_amd64.deb Size: 12012478 MD5sum: 5c838fb47e8f022bed6e31ac14b0d9db SHA1: 5dda1e69c3369949d50cccda1e73efd795e364a5 SHA256: dfc4f9de6f5411f2d36148e7cd334a3170f34e302f7d6f5f8cf56a6e0d682a8b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Message-passing parallel language and runtime system License: unknown Vendor: Institut Pasteur Package: gensoft-charm-6.10.2-mpi Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 49843 Depends: gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-charm-6.10.2-mpi_1.0_amd64.deb Size: 12893722 MD5sum: 609a387ca345fa88b54ddd7f7f8e2101 SHA1: a3703fcaab1f142aa7ce4630357051532656025e SHA256: 0097ccbc332564a2f7b27b722ee8e9808a42865a096d2b6a76242a8e64f73c64 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Message-passing parallel language and runtime system License: unknown Vendor: Institut Pasteur Package: gensoft-charm-6.10.2-mpi-cuda Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 49924 Depends: gensoft-gcc-9.2.0, gensoft-openmpi-4.0.5, gensoft-cuda-11.2 Filename: pool/main/gensoft-charm-6.10.2-mpi-cuda_1.0_amd64.deb Size: 12930224 MD5sum: f1b7fa3b5699a2c58f34d29974b09f46 SHA1: 2b05e8b7de83e6755b107702a069377023a1a78e SHA256: 27e427376322275a35ea2a91aff4bd40d4eba8f2377ec534ce6ba239228468bd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Message-passing parallel language and runtime system License: unknown Vendor: Institut Pasteur Package: gensoft-charm-6.8.2-mpi Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 41878 Depends: gensoft-adm-python-2.7.17, gensoft-adm-perl-5.30.1, gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-charm-6.8.2-mpi_1.0_amd64.deb Size: 10305360 MD5sum: 7e01220da1151747c3561e112eac7f27 SHA1: f55640a14db0d70bb48465dc3b24b51278f77e7d SHA256: 702bf09e34c919487707c2acadfab8e9712cfc93084ad749bde0586495a72a5e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Message-passing parallel language and runtime system License: unknown Vendor: Institut Pasteur Package: gensoft-charmm-v45 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 42581 Depends: zlib1g, gensoft-openmm-7.5.1, libc6, gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0, gensoft-fftw-3.3.8 Filename: pool/main/gensoft-charmm-v45_1.0_amd64.deb Size: 12244394 MD5sum: 0b7b926a294e789df0fa4f9257b81c84 SHA1: 781a10e3ada6b3781ea01dd72d963c71ed402481 SHA256: aafdd01d1373f7289ac2ba7eba927e5baed751cbe90a2b9a4f2b42806547938d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A molecular simulation program with broad application to many-particle systems with a comprehensive set of energy functions, a variety of enhanced sampling methods, and support for multi-scale techniques including QM/MM, MM/CG, and a range of implicit solvent models. FREE VERSION License: unknown Vendor: Institut Pasteur Package: gensoft-checkm-1.1.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1736160 Depends: libssl1.1, libbz2-1.0, gensoft-adm-python-3.8.1, gensoft-pplacer-v1.1-alpha19, zlib1g, libc6, gensoft-prodigal-2.6.3.pp1, gensoft-hmmer-3.3 Filename: pool/main/gensoft-checkm-1.1.2_2.0_amd64.deb Size: 375380896 MD5sum: a6cb4cc5dfb781a0614fb78d269bbac9 SHA1: 5f0a19ab4f59ba07388a541ca8ee5f24c84c2338 SHA256: 5c15904dd0e0231bc3681054da871f6c1a9a97a8a5d0cbb1a66d6b724e39df44 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. License: unknown Vendor: Institut Pasteur Package: gensoft-checkm-1.1.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1736161 Depends: gensoft-pplacer-v1.1-alpha19, zlib1g, gensoft-adm-python-3.8.1, libssl1.1, libc6, gensoft-hmmer-3.3, gensoft-prodigal-2.6.3.pp1, libbz2-1.0 Filename: pool/main/gensoft-checkm-1.1.3_2.0_amd64.deb Size: 375380708 MD5sum: 13f788a4c09514464d25d3afef1ca4b8 SHA1: d0cb7ab7f3a288a505c8b824e633f78360a5f22c SHA256: 356e4e011363c660d113fc1737e96565784f1ad7a8dbbf294fb56166b10cf06b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. License: unknown Vendor: Institut Pasteur Package: gensoft-checkm2-1.0.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 174556 Depends: gensoft-diamond-2.0.4, zlib1g, libbz2-1.0, gensoft-prodigal-2.6.3.pp1, libssl1.1, gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-checkm2-1.0.2_1.0_amd64.deb Size: 71978548 MD5sum: 8be8c820124051584b46b05fef78b11e SHA1: 57fd5bbe18cd1bef1b1958541a326a35e38c2135 SHA256: 3457f9e7545d7398654d55e1a9eb0b6c49945b09019da90c5b5980b91c6b5a7b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Assessing the quality of metagenome-derived genome bins using machine learning License: unknown Vendor: Institut Pasteur Package: gensoft-checkv-0.7.0 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 96858 Depends: libc6, gensoft-prodigal-2.6.3.pp1, libgcc-s1, gensoft-hmmer-3.3, gensoft-diamond-2.0.4, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-checkv-0.7.0_3.0_amd64.deb Size: 28209700 MD5sum: aba78a653635341ba6e418cbe224fd46 SHA1: 79cd2025d1851596224ab6bc7e7def88c1621d8e SHA256: 3ab81cf110455547e3525f4c78c79a763b055ad7605d71732fe20e968dae8585 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identification of host contamination for integrated proviruses, estimating completeness for genome fragments, and identification of closed genomes. License: unknown Vendor: Institut Pasteur Package: gensoft-checkv-1.0.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 100319 Depends: gensoft-adm-python-3.8.1, libgcc-s1, gensoft-prodigal-gv-2.9.0, libc6, zlib1g, gensoft-hmmer-3.3, gensoft-diamond-2.0.4 Filename: pool/main/gensoft-checkv-1.0.1_2.0_amd64.deb Size: 29080078 MD5sum: dfe0be6d7a00de65b8f4de185e01ac94 SHA1: d1c5375d25e0f6cbc25711cc7930d6f90f42f58a SHA256: 302c4443a7946284efc21409ad669856b6e9daa4172dda84266cc011183a63d4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identification of host contamination for integrated proviruses, estimating completeness for genome fragments, and identification of closed genomes. License: unknown Vendor: Institut Pasteur Package: gensoft-chewbbaca-2.5.5 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 297699 Depends: gensoft-mafft-7.467, gensoft-prodigal-2.6.3.pp1, gensoft-clustalw-2.1, gensoft-adm-python-3.8.1, gensoft-blast+-2.10.0 Filename: pool/main/gensoft-chewbbaca-2.5.5_2.0_amd64.deb Size: 82351204 MD5sum: 17e54f7450cab766e923031e10008dc4 SHA1: d0d2a54c0254bed6ba8e8845a7713f21c168a6ed SHA256: 834ae0f49a6f8562fe341a8dcb22ebdfb2137e242b45f512e7011803bbe4e9c2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio License: unknown Vendor: Institut Pasteur Package: gensoft-chewbbaca-2.8.5 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 315980 Depends: gensoft-adm-python-3.8.1, gensoft-blast+-2.10.0, gensoft-prodigal-2.6.3.pp1, gensoft-mafft-7.467 Filename: pool/main/gensoft-chewbbaca-2.8.5_2.0_amd64.deb Size: 86856450 MD5sum: c922f5100ab2e54b96a4e2d928230042 SHA1: 89aaf9995b6151343c44c1cf974d7aa48c7a92d7 SHA256: 4cdcb97eb986b587e11f9f14f37f5bbbe27418eba1428156562410c3dbb74bce Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio License: unknown Vendor: Institut Pasteur Package: gensoft-chewbbaca-3.3.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 71411 Depends: gensoft-fasttree-2.1.11, gensoft-prodigal-2.6.3.pp1, gensoft-mafft-7.467, gensoft-blast+-2.10.0, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-chewbbaca-3.3.5_1.0_amd64.deb Size: 14053700 MD5sum: 9e5c90370f56f01257ab1176b644d761 SHA1: 9f123c7c53583c64fb1843e9a90a4fa4cb5ceec0 SHA256: c85b851275c3b52349d672e27947d27e10bb37fc298430b36c9243eb551ed741 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio License: unknown Vendor: Institut Pasteur Package: gensoft-chewbbaca-3.3.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 71394 Depends: gensoft-adm-python-3.8.1, gensoft-mafft-7.467, gensoft-blast+-2.10.0, gensoft-fasttree-2.1.11, gensoft-prodigal-2.6.3.pp1 Filename: pool/main/gensoft-chewbbaca-3.3.6_1.0_amd64.deb Size: 14054300 MD5sum: b9bd7b1c5aa266d6baf07db2db3e2070 SHA1: a336c580c54a6c2bb937d571041b25001e36b86a SHA256: b9de0614a870317e42ec04e0ebd0cfcc9cc030ac48ab1e7b2ea826a5ede94e9d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio License: unknown Vendor: Institut Pasteur Package: gensoft-chipmunk-v8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6084 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-chipmunk-v8_1.0_amd64.deb Size: 5576506 MD5sum: 1c9f5895cb3eb81b529928088d11eab6 SHA1: ba1aa99c934fde9399e54cccfc19f19631c85ebe SHA256: 4031e3adaddd847e95d570eea1c4d0f6cf2a15f7b455bad56c483268bddf410e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fast heuristic DNA motif digger based a on greedy approach accompanied by bootstrapping. ChIPMunk identifies the strong motif with the maximum Discrete Information Content in a set of DNA sequences License: unknown Vendor: Institut Pasteur Package: gensoft-chopper-0.7.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4743 Depends: zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-chopper-0.7.0_1.0_amd64.deb Size: 1378066 MD5sum: 3bbc056a19c0e47dc5060a754288795b SHA1: df216bb8170d61a6351a70d13f720f569d2fd446 SHA256: 9fa627c7cbd3df344a664de6251b82845dd03757099dee9f3a2ebc24ed53cacd Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Rust implementation of NanoFilt+NanoLyse, both originally written in Python. This tool, intended for long read sequencing such as PacBio or ONT, filters and trims a fastq file. License: unknown Vendor: Institut Pasteur Package: gensoft-chromats-0.99 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 172 Depends: libbz2-1.0, zlib1g, bzip2, libc6 Filename: pool/main/gensoft-chromats-0.99_1.0_amd64.deb Size: 55480 MD5sum: 3a8b6276e61691d33a5acfc965201b47 SHA1: 71aa5564ed2a743b9071461b514453f02d38a5a7 SHA256: 3b2e3d0707ccb6e0024cf0e84ce683b85d09e9908a9f8bcd67836492815d3118 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Small tools for sequencer trace data License: unknown Vendor: Institut Pasteur Package: gensoft-chromhmm-1.25 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4198 Depends: gensoft-graalvm-ce-java19-22.3.1 Filename: pool/main/gensoft-chromhmm-1.25_1.0_amd64.deb Size: 3784642 MD5sum: 64f3f20aa06471e18460567ff6fdbf24 SHA1: 74a6aef0c3e5718b8a490fe039d8071dd1cd99df SHA256: a17df97d485699ae1ad28e1b203d7182191cfd9a06e158e600163bc70caaaf30 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: ChromHMM is software for learning and characterizing chromatin states. License: unknown Vendor: Institut Pasteur Package: gensoft-chromocombine-0.0.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 9130 Depends: gensoft-libpng-1.6.37, gensoft-expat-2.2.9, gensoft-xz-5.2.4, gensoft-wxwidgets-3.1.3, gensoft-xorg-libs-1.1, gensoft-pango-1.42.4, gensoft-gdk-pixbuf-2.36.12, gensoft-gcc-9.2.0, gensoft-fontconfig-2.13.91, gensoft-libffi-3.3, gensoft-glib-2.58.3, gensoft-libjpeg-turbo-2.0.4, gensoft-gsl-2.6, gensoft-gtk+-2.24.32, gensoft-libtiff-4.1.0, gensoft-atk-2.9.4, gensoft-pcre2-10.34, gensoft-cairo-1.16.0, gensoft-harfbuzz-2.6.4, gensoft-pixman-0.38.4, gensoft-freetype-2.10.1 Filename: pool/main/gensoft-chromocombine-0.0.4_1.0_amd64.deb Size: 2092130 MD5sum: 32a2673a6268a2cfc5eba57a55e08e8f SHA1: f8168fe0b717abbd43fc4b65f6bb8f1f2189d177 SHA256: 436f0985e95d7d4cbfe5e756644fb2a05231ca02606c9f2e91449e1116430b1a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ChromoCombine is a tool to help manage the large number of files generated when running ChromoPainter in parallel on a large number of separate compute nodes. 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Each individual is "painted" as a combination of all other sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-chromopainter-v2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 298 Depends: gensoft-adm-perl-5.30.1, zlib1g, libc6 Filename: pool/main/gensoft-chromopainter-v2_1.0_amd64.deb Size: 189346 MD5sum: d5062100384f72d532ea62b02712e9da SHA1: 40bd56ef2011d88467c58e0fa148cd1bd23d090d SHA256: dfacf85bdf195310d013a256028a51b2b5888ea8a5a763f632f3f2797cfa3601 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool for finding haplotypes in sequence data. Each individual is painted as a combination of all other sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-chromosight-1.6.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 444543 Depends: libc6, libstdc++6, libgcc-s1, zlib1g, gensoft-adm-python-3.10.7 Filename: pool/main/gensoft-chromosight-1.6.3_1.0_amd64.deb Size: 141232910 MD5sum: 4c5bed26fe06a4f8e86a429ff19bd009 SHA1: fe95af472346eddc01868799ba40f35f1801118e SHA256: 31a8f9dc8c4973ed72c1ab9cc28260978b45f88eb76fffa7610ae2990b749adb Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps License: unknown Vendor: Institut Pasteur Package: gensoft-chrosort-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 119 Depends: gensoft-phred-071220.b, libc6, gensoft-phrap-1.090518 Filename: pool/main/gensoft-chrosort-1.0_1.0_amd64.deb Size: 45982 MD5sum: 033565a15e04add76fe7b045c470a8a0 SHA1: e9ae51090499f7f6779d4ed8361c732e8177ea80 SHA256: 6b7703778f595582959245bef9b0c6b3c1e62c7609d376d8cabe783839d61268 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-cif-0.2.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 39868 Depends: gensoft-libiconv-1.16, libc6, gensoft-expat-2.2.9, gensoft-xz-5.2.4, gensoft-adm-perl-5.30.1, gensoft-libxml2-2.9.10 Filename: pool/main/gensoft-cif-0.2.3_1.0_amd64.deb Size: 8500928 MD5sum: a586114575bd9f91652b497c864eaf18 SHA1: d68c6acc8a3c37c3e1d2c3e1941937d48f3b0996 SHA256: 9c52548da3fec78f1a996c78cd9c00f34088ea95b42240fdea87f7f1ea3efc2c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Cut dna region in frame License: unknown Vendor: Institut Pasteur Package: gensoft-circlator-1.5.5 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 70762 Depends: gensoft-graalvm-ce-java8-20.0.0, gensoft-spades-3.14.0, gensoft-samtools-0.1.19, gensoft-gnuplot-5.2.8, gensoft-canu-1.9, gensoft-mummer-3.23, libc6, libbz2-1.0, gensoft-bwa-0.7.17, gensoft-adm-python-3.8.1, gensoft-prodigal-2.6.3.pp1, zlib1g Filename: pool/main/gensoft-circlator-1.5.5_2.0_amd64.deb Size: 23005152 MD5sum: 557a5ab4f840976732fe7746ae26adf1 SHA1: f438d5e9659aff7b2943ca725f86c55b4aa4c10c SHA256: 0002f1777323e8233d0a1f227761e4c3654968df1354c743f9d47cb59575312f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A tool to circularize genome assemblies. License: unknown Vendor: Institut Pasteur Package: gensoft-circos-0.69-9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 64515 Depends: gensoft-libgd-gd-2.2.5, gensoft-libtiff-4.1.0, gensoft-freetype-2.10.1, gensoft-libjpeg-turbo-2.0.4, gensoft-xz-5.2.4, gensoft-expat-2.2.9, libc6, gensoft-xorg-libs-1.1, zlib1g, gensoft-fontconfig-2.13.91, gensoft-adm-perl-5.30.1, gensoft-libpng-1.6.37, libbz2-1.0 Filename: pool/main/gensoft-circos-0.69-9_1.0_amd64.deb Size: 20734066 MD5sum: c86600755d881dc000f6156b4993d294 SHA1: cce59d9b3ab59f391109e6ee869e702eade773f9 SHA256: 038ef6ebcda4e5909b050ecbd19528ccba58edb5dcec1d182ce51f7bc63db5b7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: software package for visualizing data and information in circular layout License: unknown Vendor: Institut Pasteur Package: gensoft-cisgenome-2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 186050 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-cisgenome-2.0_1.0_amd64.deb Size: 81086688 MD5sum: f45f029370b8269bb56df436f59afa90 SHA1: 835502a9d98afa8a3c4d0ea0f59ca82181525a66 SHA256: 3939814324e093e3710e36df2b402f2e194157c3e995dda1ff545336b5fe8bea Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis License: unknown Vendor: Institut Pasteur Package: gensoft-cistem-1.0.0-beta Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 47560 Depends: gensoft-cairo-1.16.0, gensoft-libtiff-4.1.0, gensoft-xorg-libs-1.1, gensoft-pango-1.42.4, gensoft-harfbuzz-2.6.4, gensoft-gtk+-2.24.32, gensoft-pixman-0.38.4, gensoft-libjpeg-turbo-2.0.4, gensoft-pcre2-10.34, libc6, gensoft-libffi-3.3, gensoft-wxwidgets-3.0.2, gensoft-atk-2.9.4, libselinux1, gensoft-xz-5.2.4, libmount1, gensoft-freetype-2.10.1, gensoft-gdk-pixbuf-2.36.12, libpcre2-8-0, gensoft-fontconfig-2.13.91, gensoft-fftw-3.3.8, libfribidi0, zlib1g, gensoft-gcc-9.2.0, libbz2-1.0, libblkid1, gensoft-glib-2.58.3, gensoft-expat-2.2.9, gensoft-libpng-1.6.37 Filename: pool/main/gensoft-cistem-1.0.0-beta_1.0_amd64.deb Size: 22054128 MD5sum: d936ac901593ed2ee19be3953a21b6c6 SHA1: da2fd676cea5718fc7c1656fb2b863dfa70a0bcf SHA256: cce146580353d1f68e207b78ff9e9cbe34ae457447d1d3e8ec7f3a0d3f8d1bb4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them License: unknown Vendor: Institut Pasteur Package: gensoft-clapack-3.2.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 21728 Depends: libc6 Filename: pool/main/gensoft-clapack-3.2.1_2.0_amd64.deb Size: 4139156 MD5sum: 75a46b1873da9484994cf6cfbb8701c8 SHA1: 69ebb5c06041a94363626c081fef4695e35d4757 SHA256: 3f9265df213a2b4822ac2fab85b1890761d0fee15b9610b6ce1f7f97edb99a89 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ANSI C translation of the LAPACK library License: unknown Vendor: Institut Pasteur Package: gensoft-class2-2.1.7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4471 Depends: zlib1g, libc6, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-class2-2.1.7_1.0_amd64.deb Size: 1725108 MD5sum: 7832666e03ad6189e67c2916dbc64402 SHA1: 6f4947d15e13ad3b16df3509d34e07a532f64221 SHA256: 42598c6e148328f936cd3540c7094e83fb690287c40f6339d6e309c53d5c1092 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: fast and accurate program for transcript assembly of RNA-seq reads aligned to a reference genome. License: unknown Vendor: Institut Pasteur Package: gensoft-clcgenomicsworkbench-20.0.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 740033 Depends: gensoft-libsysconfcpu-0.5 Filename: pool/main/gensoft-clcgenomicsworkbench-20.0.4_2.0_amd64.deb Size: 384895268 MD5sum: a24dfb5a04fcf994e30aefe37b4cca2b SHA1: 004638d26c022bc200efa29f8aba8262b4f3cceb SHA256: 437fe888f8021ae14c3623f5a6e94d0c966e08bda31becb6af8604f78da4820e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Graphic interface to launch the proprietary NGS data dedicated programs (read trimming, mapping, de novo assembly, SNP calling...) License: unknown Vendor: Institut Pasteur Package: gensoft-clcgenomicsworkbench-24.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 705526 Depends: gensoft-libsysconfcpu-0.5 Filename: pool/main/gensoft-clcgenomicsworkbench-24.0.1_1.0_amd64.deb Size: 381589428 MD5sum: d906ae6db0551396e18ab30c67800f17 SHA1: 5d769c58f73a636639cec4a54535799cf2cae478 SHA256: c38c16bf992d20799903c0c339fd778c74ab376edf6513c346b05e8d68a9c9a5 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Graphic interface to launch the proprietary NGS data dedicated programs (read trimming, mapping, de novo assembly, SNP calling...) License: unknown Vendor: Institut Pasteur Package: gensoft-clearcut-1.0.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 110 Depends: libc6 Filename: pool/main/gensoft-clearcut-1.0.9_1.0_amd64.deb Size: 52636 MD5sum: 23b2f1cac8d21ed5b6cf4279e1c6f11b SHA1: 262e7fad3ec1cb43166ab92bf762f948d576b310 SHA256: 4cba5de7fcae4a2680d0d385aac971778e811a86544c962ee0756399290f5bd0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Relaxed Neighbor Joining License: unknown Vendor: Institut Pasteur Package: gensoft-cli11-2.3.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 380 Filename: pool/main/gensoft-cli11-2.3.1_1.0_amd64.deb Size: 82432 MD5sum: 1a4361d2458030168669485129a2cb0b SHA1: 7a7d99f9c4becd640b5df49dc294e04acc38e27f SHA256: 449b02b0d0fac3be83fe1aba5f6db049da300af7b8b5d5e934a0655c10046c9e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface. License: unknown Vendor: Institut Pasteur Package: gensoft-clinker-0.0.23 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 239783 Depends: gensoft-adm-python-3.8.1, libgcc-s1, libstdc++6, libc6, zlib1g Filename: pool/main/gensoft-clinker-0.0.23_1.0_amd64.deb Size: 73730936 MD5sum: c23f83839eba7b5667e155edd1500000 SHA1: 0847f8fcca292b51a4ca12f7a75d58ae9e089ce5 SHA256: db8276fddec899548b3346d54cca53118932849bc22582c5cafd073df4666e28 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Gene cluster comparison figure generator License: unknown Vendor: Institut Pasteur Package: gensoft-clinker-0.0.30 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 243693 Depends: zlib1g, libstdc++6, libgcc-s1, libc6, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-clinker-0.0.30_1.0_amd64.deb Size: 75049006 MD5sum: 60f3f493bd2ac2fad87d395cf4bb9e6a SHA1: e02ec47e9e46ce3be897986db248eeb0c502d338 SHA256: 8122bfe6114a5a063f7d5f4d3f5b7d939dca25e59e1126ee1f00bccef269ce57 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Gene cluster comparison figure generator License: unknown Vendor: Institut Pasteur Package: gensoft-clinker-0.0.31 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 246071 Depends: libc6, gensoft-adm-python-3.8.1, libgcc-s1, libstdc++6, zlib1g Filename: pool/main/gensoft-clinker-0.0.31_1.0_amd64.deb Size: 75547182 MD5sum: 98fc920b93dda5a8a65e76bdc3f7b8c6 SHA1: b6f147f5af5344eed5537fcf4012fb35eeea979b SHA256: 2a251d8999fb4841dbe8aa171539f5ed1d78cdffcea60a860c410dee0bcbb931 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Gene cluster comparison figure generator License: unknown Vendor: Institut Pasteur Package: gensoft-clinsv-0.9 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1049779 Depends: gensoft-apptainer-1.1.5 Filename: pool/main/gensoft-clinsv-0.9_1.0_amd64.deb Size: 1058379994 MD5sum: ae8b7f0287d3d66847098d97dc37ebdd SHA1: bbf588247590e97da175bf90d27930744e17ef2a SHA256: f9c2526a4782d5d1e6d4875cf6fca2e92f5ad83c0fb573d7a65df80bbdf82945 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-clinsv-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 138410 Depends: gensoft-adm-perl-5.30.1, gensoft-texlive-2022, libc6, gensoft-lumpy-sv-0.3.1, gensoft-r-4.2.1, libssl1.1, zlib1g, gensoft-adm-python-2.7.17, gensoft-libbigwig-0.4.7, gensoft-adm-python-3.8.1, gensoft-samtools-1.4, gensoft-htslib-1.4, libgcc-s1, gensoft-curl-7.68.0, gensoft-ucsc-tools-v390, gensoft-cnvnator-v0.3.3, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-clinsv-1.0.0_1.0_amd64.deb Size: 42688706 MD5sum: 138b4ab148b68e7e400b93a4294f1d8e SHA1: edb53fcd920902f11fc58affe08872652c8fcc98 SHA256: 2647dfe3879766a8fb14670442c8598ea01ecdf92fa996ca85a345b84da53db3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-clipkit-2.3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 104359 Depends: gensoft-adm-python-3.10.7, libstdc++6, zlib1g, libc6, libgcc-s1 Filename: pool/main/gensoft-clipkit-2.3.0_1.0_amd64.deb Size: 31186408 MD5sum: 88df3b1c14c5130652d9958afb057170 SHA1: 0c14996a42a89a152dd7294b08c406b4c3018e07 SHA256: 63a81bd4ae624dbb2bf1a81fa1b37de7a9816e36702c5e40c37aee12ca45d654 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference License: unknown Vendor: Institut Pasteur Package: gensoft-clipper-1.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1124776 Depends: gensoft-lzo-2.10, libgcc-s1, zlib1g, gensoft-gcc-9.2.0, libstdc++6, libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-clipper-1.2.1_1.0_amd64.deb Size: 275089780 MD5sum: e30898f300af0e6bc6bbc580fac7184f SHA1: a12da234dd9d9309c2f04087062b09b6df8fe09e SHA256: 26e89548735f99b526b0b311da6c07e6287a9a588dfe6f29a7356f7aa3c4401f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CLIPper, CLIP peak enrichment recognition, is a tool to define peaks in your CLIP-seq dataset. License: unknown Vendor: Institut Pasteur Package: gensoft-cln-1.3.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 219760 Depends: libc6, gensoft-gcc-9.2.0, gensoft-gmp-6.2.0 Filename: pool/main/gensoft-cln-1.3.6_1.0_amd64.deb Size: 48950732 MD5sum: 5fb2d9070364021676a2da6fe57c174b SHA1: 3448e9a7a9ad4fa47313dbac4d0f10e57d907114 SHA256: 325f70f39e2517dbdb42f8a0c753766dc7b7dfc1a766d03c4c4cc205dcdcb3c7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CLN (Class Library for Numbers) is a library for efficient computations with all kinds of numbers in arbitrary precision License: unknown Vendor: Institut Pasteur Package: gensoft-clonalframe-1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1185 Depends: libc6, zlib1g, gensoft-gsl-2.6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-clonalframe-1.2_1.0_amd64.deb Size: 880038 MD5sum: cc93670f48cce41cc35ee2adde25a2ac SHA1: ce7d21853ac81e4717daa0e1987926a26b590178 SHA256: a2e85421aafacad863fea887b127e72fcbc374bab175ba78550e029d22017bcc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Package for the inference of bacterial microevolution using multilocus sequence data License: unknown Vendor: Institut Pasteur Package: gensoft-clonalframeml-1.12 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 295 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-clonalframeml-1.12_2.0_amd64.deb Size: 127382 MD5sum: a57d04d980c868fea17603705efe143d SHA1: 2e3da361c4bef9f7c2b3b1f453530149131952d4 SHA256: a7676f02c3fd8ee025ec41183bd011bc711a7c4d5339caa3f10b07ef7dd3fcae Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: ClonalFrameML is a maximum likelihood implementation of the Bayesian software ClonalFrame which was previously described by Didelot and Falush (2007). The recombination model underpinning ClonalFrameML is exactly the same as for ClonalFrame, but this new implementation is a lot faster, is able to deal with much larger genomic dataset, and does not suffer from MCMC convergence issues. License: unknown Vendor: Institut Pasteur Package: gensoft-clp-1.17.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3647 Depends: gensoft-lapack-3.9.0, gensoft-gcc-9.2.0, gensoft-coinutils-2.11.4, gensoft-osi-0.108.6 Filename: pool/main/gensoft-clp-1.17.6_1.0_amd64.deb Size: 1459362 MD5sum: 4f2c34b92d4bd501e51376ad87e4dda7 SHA1: cba62a7798977938886f41208bebd2d3cc56ccce SHA256: 6172b7e35f5c5ced377a569cea5b1f1819f3b0b8a752aa9a11c4fad25c7b265d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Clp (Coin-or linear programming) is an open-source linear programming solver. License: unknown Vendor: Institut Pasteur Package: gensoft-clustal-omega-1.2.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 9097 Depends: libc6, gensoft-argtable-2.13, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-clustal-omega-1.2.4_1.0_amd64.deb Size: 2543862 MD5sum: 4cdd9339f87c502e77ac938ae6e3e08c SHA1: 6da4385422fa5ff4fc813f1e59fa6a29fe28cc04 SHA256: afd909cb6f8a1fa2d7a9c4fe7c992b3a7be4889b2be110717d2422d6b416d859 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CLUSTAL-OMEGA is a general purpose multiple sequence alignment program for proteins. License: unknown Vendor: Institut Pasteur Package: gensoft-clustalw-2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 19317 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-clustalw-2.1_1.0_amd64.deb Size: 5428246 MD5sum: a48e313b255732d95ed2955002ad4c26 SHA1: 1374150e07aa6c80d40a947d6581255b224c6fcb SHA256: 872375f858f09a2661a3c8f81a1f2d3ffcc9271d2fc63b06835c28f034bcc75c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A general purpose multiple alignment program for DNA or proteins License: unknown Vendor: Institut Pasteur Package: gensoft-cluster-buster-2010-02-19 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 139 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-cluster-buster-2010-02-19_1.0_amd64.deb Size: 58712 MD5sum: f3e7ecaa5e47b63d95885cd02fe1c50e SHA1: 8f441207208ea9860e3e8f3c7fd196f0115dfaba SHA256: cd7bd3957c533d398a8e782a465d285c81994a198d7987d567445223f8a7597a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Cluster-Buster is a program for finding interesting functional regions, such as transcriptional enhancers, in DNA sequences. Its main premise is that the functional region contains multiple smaller elements, e.g. protein-binding sites, which thus occur in a cluster in the DNA sequence. The user needs to specify a list of motifs short sequence patterns. the program will then look for dense clusters of these motifs in the sequence. License: unknown Vendor: Institut Pasteur Package: gensoft-clusterone-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 564 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-clusterone-1.0_1.0_amd64.deb Size: 529632 MD5sum: d14112d5e6f59dcb2da9abc30e1f2fab SHA1: ecb377901e335a08b975a51650309edecb42104d SHA256: 84b661bf185527619b95c1aa30d03bef931f075ac698e2f3b1813dcb6615b96f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Clustering with Overlapping Neighborhood Expansion is a graph clustering algorithm that is able to handle weighted graphs and readily generates overlapping clusters License: unknown Vendor: Institut Pasteur Package: gensoft-clusterone-1.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 337 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-clusterone-1.2_2.0_amd64.deb Size: 310568 MD5sum: 2c0c61e70df33ca91ff0dde945039257 SHA1: 15560274b5c4ff36f0641544fa967135915b0757 SHA256: 9eb063fc85ceb15c89a400621f061b170621042cb85e0b0d3760651853ce7702 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Clustering with Overlapping Neighborhood Expansion is a graph clustering algorithm that is able to handle weighted graphs and readily generates overlapping clusters License: unknown Vendor: Institut Pasteur Package: gensoft-cmake-3.16.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 73673 Depends: gensoft-gcc-9.2.0, libc6, libtinfo5, libncurses5 Filename: pool/main/gensoft-cmake-3.16.3_2.0_amd64.deb Size: 20641234 MD5sum: 8329c5c2ab7cd7c575c9f922a906f5a1 SHA1: 2f6f5777adf40e0e34656e97919ca9dc412db0ea SHA256: 6bc17c5e6482898de8305bab87f806a1b85028ae86d3dc24ed51ceb31f523907 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: cross-platform, open-source build system. 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License: unknown Vendor: Institut Pasteur Package: gensoft-cmake-3.19.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 51025 Depends: gensoft-gcc-9.2.0, libtinfo5, libncurses5, libc6 Filename: pool/main/gensoft-cmake-3.19.4_2.0_amd64.deb Size: 20214424 MD5sum: adfe9e896eb366cbacd8ef69672c0416 SHA1: ffe0c4baa81e06753c53459adf324ec5e29e4bd3 SHA256: 9838b7726e5a56ac348e3f8a8dc763f2ac73a45d034b7a284f14fc311d18db1f Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: cross-platform, open-source build system. License: unknown Vendor: Institut Pasteur Package: gensoft-cmake-3.27.7 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 75505 Depends: libncurses5, libtinfo5, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-cmake-3.27.7_2.0_amd64.deb Size: 27499716 MD5sum: 47a78381e39ce88ba82d1e72cb14f510 SHA1: cad49dbd9cc1aaef85b673da5f5903e0ee4738d3 SHA256: 973b20e7a54dcd66f48a6b39dd5117684706f8bfb8e66a6f5787177a9a681481 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: cross-platform, open-source build system. License: unknown Vendor: Institut Pasteur Package: gensoft-cmake-3.31.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 80672 Depends: gensoft-gcc-9.2.0, libc6, libtinfo5, libncurses5 Filename: pool/main/gensoft-cmake-3.31.5_1.0_amd64.deb Size: 29669204 MD5sum: 424faa6c3922c22701422721b6c11403 SHA1: 2151013117a0720ac0543b89fa440598268fa16e SHA256: 4ec70a9a431fdeecb5692cd7a2336a7634bb6cb491f15ba0ff162f3261fd035c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: cross-platform, open-source build system. License: unknown Vendor: Institut Pasteur Package: gensoft-cmseq-1.0.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 268522 Depends: libc6, gensoft-adm-python-3.8.1, gensoft-samtools-1.10 Filename: pool/main/gensoft-cmseq-1.0.3_1.0_amd64.deb Size: 83867274 MD5sum: 4ccb8fe689e5aa39330bcfc83055617e SHA1: f75521660f00f383111080771ce05448400df216 SHA256: b67024aad14c5b9715cb39801f3042cf4ed5af4dee750d8202d326253831a503 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CMSeq is a set of commands to provide an interface to .bam files for coverage and sequence consensus. License: unknown Vendor: Institut Pasteur Package: gensoft-cnvnator-v0.3.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2437 Depends: gensoft-cern-root-v6.20.04, gensoft-tbb-2020.1, gensoft-freetype-2.10.1, gensoft-gcc-9.2.0, gensoft-libpng-1.6.37, libc6, gensoft-curl-7.68.0, zlib1g, gensoft-pcre-8.43, gensoft-xz-5.2.5, gensoft-zstd-1.4.4, gensoft-lz4-1.9.2, libbz2-1.0, libssl1.1 Filename: pool/main/gensoft-cnvnator-v0.3.3_2.0_amd64.deb Size: 918784 MD5sum: 0a5744496cdccaa29555d1bf6539165e SHA1: f46b21685f23ff0c317c38ff67f811b77795338a SHA256: 4db02971e953111f7e3ffa2792fc1a3e3a21024c6eb7a272c63805341d8ff57d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: CNV discovery and genotyping from read-depth (RD) analysis of personal genome sequencing. License: unknown Vendor: Institut Pasteur Package: gensoft-cnvnator-v0.4.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4681 Depends: gensoft-curl-7.68.0, gensoft-xz-5.2.5, gensoft-gcc-9.2.0, gensoft-zstd-1.4.4, gensoft-lz4-1.9.2, libssl1.1, gensoft-tbb-2020.1, libbz2-1.0, gensoft-libpng-1.6.37, gensoft-pcre-8.43, gensoft-freetype-2.10.1, libc6, zlib1g, gensoft-cern-root-v6.20.04 Filename: pool/main/gensoft-cnvnator-v0.4.1_2.0_amd64.deb Size: 1696684 MD5sum: 291be29eeb5b15ccebded6487ee039a5 SHA1: e12d98636496149aa499a4a70a2025769ede9b27 SHA256: eaa04293ff21f42f71c1e6f68b5375ba5e595e1fedbb12be6e893f44342c35ab Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: CNV discovery and genotyping from read-depth (RD) analysis of personal genome sequencing. License: unknown Vendor: Institut Pasteur Package: gensoft-cocoalib-0.99650 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 18163 Filename: pool/main/gensoft-cocoalib-0.99650_1.0_amd64.deb Size: 4984190 MD5sum: bdbe77e89b612c67efe6d7439b76df04 SHA1: 0169a7b8326673ac49491d3a70732b44a16b9ef7 SHA256: 125722ff5429424a384832b41ff646d32ee9c712e1b9ddef02857e535a07f1f3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CoCoALib is a GPL C++ library for doing Computations in Commutative Algebra License: unknown Vendor: Institut Pasteur Package: gensoft-codonw-1.4.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2705 Depends: libc6 Filename: pool/main/gensoft-codonw-1.4.4_2.0_amd64.deb Size: 84986 MD5sum: f700b0cbcd314a3e63c609be9fad2edf SHA1: 6c329dd4e6a6498d09d7d5d8be7b3e353d0d30f5 SHA256: 3764e401003a8c959932b505400fd829faaecf42171109822fe2cb266945e052 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage License: unknown Vendor: Institut Pasteur Package: gensoft-coinutils-2.11.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2153 Depends: gensoft-lapack-3.9.0, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-coinutils-2.11.4_1.0_amd64.deb Size: 808876 MD5sum: 472d229dfbf6ee2f21cd7fe4a276db17 SHA1: 317d6678eba509caad872b3ac767ec6b7c9183eb SHA256: 0139e31637dac74654ca033371ada7777e9b8f99d6640a64dac81f8cd205c89d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions - classes for storing and manipulating sparse matrices and vectors, performing matrix factorization, parsing input files in standard formats, e.g. MPS, building representations of mathematical programs, performing simple presolve operations, warm starting algorithms for mathematical programs, comparing floating point numbers with a tolerance classes for storing and manipulating conflict graphs, and classes for searching and storing cliques and odd cycles in conflict graphs, among others License: unknown Vendor: Institut Pasteur Package: gensoft-colabfold-1.5.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 7648058 Depends: libstdc++6, gensoft-gcc-9.2.0, gensoft-mmseqs2-14-7e284, gensoft-kalign-2.04, gensoft-fftw-3.3.8, gensoft-cudnn-11.x-v8.7.0.84, libgcc-s1, gensoft-adm-python-3.10.7, gensoft-cuda-11.6, libc6, zlib1g Filename: pool/main/gensoft-colabfold-1.5.2_1.0_amd64.deb Size: 5803231422 MD5sum: 38e7a2d63111dbf97372f976a240dd88 SHA1: 040b24dad69320cd7a49e252a00aa97786f491d5 SHA256: 8b5f0d538d3ebc4e02ef2a547f919ce2ebaa60bb961894e5df02b6d4f6574edb Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Making Protein folding accessible to all! License: unknown Vendor: Institut Pasteur Package: gensoft-colate-0.1.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1689 Depends: libc6, gensoft-xz-5.2.5, gensoft-gcc-9.2.0, zlib1g, libbz2-1.0, libssl1.1, gensoft-curl-7.68.0 Filename: pool/main/gensoft-colate-0.1.0_2.0_amd64.deb Size: 623442 MD5sum: 0d73c8280becfe4f420a96e9b2c715e7 SHA1: ca75973da3c7e215d7170b7670c2bb16214889e3 SHA256: b0d430b4cbb58d937c91480deda1060a68e6a08fc48e1d8d396927274d99eef1 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Software for inferring coalescence rates for unphased, low-coverage genomes License: unknown Vendor: Institut Pasteur Package: gensoft-comalign-na Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 199 Depends: libc6 Filename: pool/main/gensoft-comalign-na_1.0_amd64.deb Size: 74862 MD5sum: ea808af7cc2eb665c8032214421606f2 SHA1: cf7b71b3b4e2944cc207bc4bc20bc87488c2a5b6 SHA256: 4114c5bb47ffda5c2ad8af7ddab94205120523602526c6b6d37aacc248c3c5b7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Generates a number of heuristic alignments and combines these best possible License: unknown Vendor: Institut Pasteur Package: gensoft-combat-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 193 Depends: libc6 Filename: pool/main/gensoft-combat-1.0_1.0_amd64.deb Size: 77936 MD5sum: e3946c3573cbc76063a1102d5ac6c4f5 SHA1: f2c159d91f21a6030072700764befc93f1fc0092 SHA256: 3357dbf287d4d59855db80094e6318effebcba022013bd734688963f53c55ac9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The program combat implements the method for combined DNA/protein alignment License: unknown Vendor: Institut Pasteur Package: gensoft-compostbin-0.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 17958 Depends: gensoft-xz-5.2.4, gensoft-libiconv-1.16, gensoft-adm-perl-5.30.1, libc6, gensoft-expat-2.2.9, gensoft-libxml2-2.9.10, gensoft-blat-36 Filename: pool/main/gensoft-compostbin-0.0.1_1.0_amd64.deb Size: 4748988 MD5sum: 0932ce783fda48fe680ca5020fd17553 SHA1: e5ae3052f6adc56d8527986e18a86dc7eb788052 SHA256: cec0debd1f07ec0c465ffaf7d4d69626c3d41fa6d39359b6a594867826e5021d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CompostBin is a DNA-composition-based binning algorithm for classifying metagenomic reads. Unlike previous methods that seek to bin assembled contigs and often require training on known reference genomes, CompostBin has the ability to accurately bin raw sequence reads without need for assembly or training. (matlab part not installed) License: unknown Vendor: Institut Pasteur Package: gensoft-concaterpillar-1.8a Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 177456 Depends: gensoft-adm-python-2.7.17, libc6, gensoft-raxml-8.2.12, gensoft-openmpi-4.0.5, libstdc++6, libgcc-s1 Filename: pool/main/gensoft-concaterpillar-1.8a_1.0_amd64.deb Size: 52503724 MD5sum: 8371c011266cd0b4cd0986a9fd8a3ca8 SHA1: 63269d6f000b2098e1c830d05b9cd17084eb6ddc SHA256: b54679ea01bcb326a118ff270aad0a88f516fcd48a7905360a66a24ba064ffc0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: 1.8a Concaterpillar is a hierarchical likelihood-ratio test for phylogenetic congruence License: unknown Vendor: Institut Pasteur Package: gensoft-concatfasta-1.00 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 8 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-concatfasta-1.00_1.0_amd64.deb Size: 4278 MD5sum: 484ba50625f4dba2f0ada523f43a2881 SHA1: 688019b5664aad6beb6465beb61055eacbae5c8a SHA256: d6ac503ebb674b3bd80015e7cb8513fa957b82842644a85cc6ae85e723921dac Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Concatenation of two fasta files with same identifier License: unknown Vendor: Institut Pasteur Package: gensoft-concoct-1.1.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 405377 Depends: gensoft-gsl-2.6, libgcc-s1, libc6, libgomp1, gensoft-mummer-3.23, gensoft-adm-python-3.8.1, libstdc++6, gensoft-samtools-1.10 Filename: pool/main/gensoft-concoct-1.1.0_2.0_amd64.deb Size: 128012902 MD5sum: 706e853cd2df4481f7f99c1778ff5341 SHA1: 8d0ce7189f331ab40f8f6990c8c0ca66ee08bc2a SHA256: 3578f1eceae4a9743acf26c020155d45464cb3d9971fbfabb40b507d12ac8b71 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads License: unknown Vendor: Institut Pasteur Package: gensoft-confindr-0.7.4 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 149869 Depends: libcrypt1, gensoft-bbmap-38.91, gensoft-minimap2-2.17, gensoft-adm-python-3.8.1, libgcc-s1, libc6, gensoft-mash-2.2, gensoft-kma-1.3.4, zlib1g Filename: pool/main/gensoft-confindr-0.7.4_1.0_amd64.deb Size: 44286928 MD5sum: 15fc4cd6facbe67cb3a60b6779c18f33 SHA1: e3a70e3d94562991873918f4cbd1e978d363507e SHA256: f6ce2319a16242f9226610597f43b4b5977b64c4433f043ffe333e52ffe93e79 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Detect intra- and inter-species bacterial contamination in NGS reads License: unknown Vendor: Institut Pasteur Package: gensoft-consed-26.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 41143 Depends: gensoft-phrap-1.090518, libc6, gensoft-adm-perl-5.30.1, gensoft-phred-071220.b Filename: pool/main/gensoft-consed-26.0_1.0_amd64.deb Size: 16627188 MD5sum: 620fb78a239956dde56071b151f07c48 SHA1: be59b911c88b4bc7e997935dbee97a5f7e88eb2b SHA256: 76b80b4a74bf8419fc53e82b4d28f195a933737cacd3e89b2ac5bc09832416fa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A tool for viewing, editing, sequence assemblies created with phrap License: unknown Vendor: Institut Pasteur Package: gensoft-consensus-2004-04-14 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 933 Depends: libc6 Filename: pool/main/gensoft-consensus-2004-04-14_1.0_amd64.deb Size: 371420 MD5sum: 184538f78eb803997341f5f3c4184dcf SHA1: 2892eb55825beaabb5af0c64b7baa5f9538261f3 SHA256: 06cb33a39bf6e0b499ff23c83db4a8acf38d2fb66a67a2cf89443ba443aedcc1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Programs are a collection of programs for determining and analyzing DNA and protein patterns describing functional elements License: unknown Vendor: Institut Pasteur Package: gensoft-contig-extender-0.0.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 108617 Depends: libc6, gensoft-bowtie2-2.3.5.1, gensoft-adm-python-3.8.1, libgcc-s1, zlib1g, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-contig-extender-0.0.1_1.0_amd64.deb Size: 30942766 MD5sum: 75b3f4194e7a523685cb04cbc5fc863a SHA1: 7b9f5eaf56218e95ac266ad57448e26592c3efbf SHA256: 26ea30f4971a9bd7d1a9968fa4b5557e2601e7121ec8039049d191802cff8090 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy that explores multiple extending paths to achieve longer and highly accurate contigs. ContigExtender is effective for extending contigs significantly in in silico synthesized and real metagenomics datasets. License: unknown Vendor: Institut Pasteur Package: gensoft-contig-info-v2.01 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 45 Filename: pool/main/gensoft-contig-info-v2.01_1.0_amd64.deb Size: 15548 MD5sum: a671a7e0342fe41c965e3efe31deb004 SHA1: 1f8864f8bd214f368e35171a266c170c21d7c302 SHA256: 31b13164db130b60685867c5bec70e910d78fdaec0216cc236f3c4235a81fc8b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: estimating several standard descriptive statistics from FASTA-formatted contig files inferred by de novo genome assembly methods License: unknown Vendor: Institut Pasteur Package: gensoft-contiguator-v2.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 96310 Depends: gensoft-blast+-2.10.0, gensoft-adm-python-2.7.17, gensoft-mummer-3.23, libbz2-1.0, libc6, zlib1g, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-contiguator-v2.7_1.0_amd64.deb Size: 25852526 MD5sum: 18a354d1ead4aa9d4943d7beeea47a1a SHA1: 0f007e4600f1f1e5143a5cbf6c3334cd6dfd38c5 SHA256: e9807a7452d6ddc1cd7ad55e7c5b0bcd484ee0652b6b694926a253d95600fde0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool for reordering assembled contigs/scaffolds against a finished reference genome sequence License: unknown Vendor: Institut Pasteur Package: gensoft-convert3d-0.8.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 33420 Filename: pool/main/gensoft-convert3d-0.8.2_2.0_amd64.deb Size: 10391526 MD5sum: ed9c8ee9eaaaf9ec73e21a6f834ee565 SHA1: 05fb089123e2cae3f77e3d8a293c8197d7f47bc7 SHA256: 153786c6d65495638a35a878f09af31091d172cc2d0decd4b8216001c3cb8b58 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: command-line tool to create image analysis pipelines License: unknown Vendor: Institut Pasteur Package: gensoft-cooler-0.9.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 406166 Depends: libc6, gensoft-pairix-0.3.7, gensoft-htslib-1.18, gensoft-adm-python-3.10.7 Filename: pool/main/gensoft-cooler-0.9.3_1.0_amd64.deb Size: 128283224 MD5sum: 399a4ef6d661435c43c4e8278bcafe79 SHA1: 70bf9c29f27cfef1782c891b0c7cb93adef2de0a SHA256: a7e1fb6a6a705f752e0dca7a83c9bc89da9e0e252a526f0a96eb55531ea85ef7 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Cooler is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices. License: unknown Vendor: Institut Pasteur Package: gensoft-coolpuppy-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 741873 Depends: gensoft-adm-python-3.10.7, libstdc++6, libgomp1, libc6, zlib1g, libgcc-s1 Filename: pool/main/gensoft-coolpuppy-1.1.0_1.0_amd64.deb Size: 244349944 MD5sum: a7115b30b3ace477c3ea9ca123ca98e0 SHA1: b7bf05811e1f995054d95f5f7b28a8e814f09ab9 SHA256: f996b66d9393b64340c5f3fed1fea947f3cd9da15972fbf99422e96d4d127f7d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A versatile tool to perform pile-up analysis on Hi-C data in .cool format. License: unknown Vendor: Institut Pasteur Package: gensoft-cooltools-0.6.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 656297 Depends: libc6, libgomp1, libstdc++6, zlib1g, gensoft-adm-python-3.10.7, libgcc-s1 Filename: pool/main/gensoft-cooltools-0.6.1_1.0_amd64.deb Size: 214637824 MD5sum: 87bf9ac1cea5a57af34aa1e78198cddc SHA1: 0c9a5134505a666c9d57dda6c01633d5868ec22b SHA256: 4258ad281b32bde627804826e9d6fb36fa7a27efa25b5b79d2fe7b9a95163c5b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: tools for your .cools License: unknown Vendor: Institut Pasteur Package: gensoft-coordgenlibs-2.0.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2997 Depends: gensoft-gcc-9.2.0, gensoft-boost-1.72.0, gensoft-xz-5.2.4, gensoft-zstd-1.4.4 Filename: pool/main/gensoft-coordgenlibs-2.0.3_1.0_amd64.deb Size: 721842 MD5sum: c040398a26556a067c3150acc3ccc912 SHA1: f6f5edb6ccb23ce84e3facb8adb2ebdc582ce8fb SHA256: 1efadb8ce4018308710e3aa2d935b305855cf4822e87f37ab086330175974fb9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Schrodinger-developed 2D Coordinate Generation License: unknown Vendor: Institut Pasteur Package: gensoft-copla-1.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 981975 Depends: gensoft-libsigc++-2.10.4, gensoft-xz-5.2.5, gensoft-adm-python-3.8.1, gensoft-cairomm-1.14.2, gensoft-fastani-1.33, gensoft-cairo-1.17.4, gensoft-prodigal-2.6.3.pp1, gensoft-fontconfig-2.13.91, gensoft-blast+-2.10.0, gensoft-icu-65.1, gensoft-freetype-2.10.1, gensoft-boost-1.72.0, gensoft-macsyfinder-1.0.5, gensoft-expat-2.4.1, gensoft-xorg-libs-1.1, gensoft-hmmer-3.3.1, gensoft-pixman-0.38.4, gensoft-gcc-9.2.0, libbz2-1.0, gensoft-libpng-1.6.37, libc6, gensoft-ruby-2.7.0, gensoft-parallel-20200222, gensoft-zstd-1.4.4, gensoft-gmp-6.2.0, gensoft-plasmidfinder-2.1.1 Filename: pool/main/gensoft-copla-1.0_2.0_amd64.deb Size: 195634646 MD5sum: 87267871f45143e1c1d88c3099d19feb SHA1: 039d19e545cf971bb60dfe1392d84c797385f88d SHA256: 502c771854d5ef579c4a27364b19ac090f375c1e2f2610d89eaae96a811081cc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an application for plasmid classification in Plasmid Taxonomic Units (PTUs). License: unknown Vendor: Institut Pasteur Package: gensoft-coral-1.4.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 407 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-coral-1.4.1_1.0_amd64.deb Size: 140078 MD5sum: 33fa9ae78e5795d5552e953c0db035ad SHA1: fbaa73294833022c815fb91fdb908306b62bdf76 SHA256: 5b83c932ce278a9a9e18301169659fc1cafb8e4de2f91bbdf8b126b98a6fe0e6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Coral is a program to correct sequencing errors in short-read high-throughput data, such as those generated by Illumina Genome Analyzer and Roche 454 Genome Sequencer. License: unknown Vendor: Institut Pasteur Package: gensoft-cosa-na Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 27 Depends: libc6 Filename: pool/main/gensoft-cosa-na_1.0_amd64.deb Size: 8588 MD5sum: aa5df6e95012f9fa994c0f4590298e21 SHA1: 037454f0b5a7bfe38f851b051b2959f799b53e33 SHA256: 2bdaa8c2381d73300d14594e834372d26e5a72499b83da70a32009a9068c7ab4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Clustal Ouput Structural Analysis License: unknown Vendor: Institut Pasteur Package: gensoft-count-2018-11-30 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3008 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-count-2018-11-30_1.0_amd64.deb Size: 2780896 MD5sum: fc08d83b3ec20d19021a7b4abe654678 SHA1: 02579aa919c3cee8e0f1f6405f01e4848255caa4 SHA256: 86b81468396537a008771390c5ec287ad16ef0e21e4a05132da34ba1ef454696 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Count is a software package for the evolutionary analysis of homolog family sizes (phylogenetic profiles), or other numerical census-type characters along a phylogeny. License: unknown Vendor: Institut Pasteur Package: gensoft-coverm-0.6.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 13177 Depends: gensoft-dashing-v0.4.6, gensoft-samtools-1.10, libc6, gensoft-fastani-1.33, gensoft-minimap2-2.17, gensoft-gcc-9.2.0, gensoft-bwa-mem2-2.2.1 Filename: pool/main/gensoft-coverm-0.6.1_1.0_amd64.deb Size: 4017602 MD5sum: 25106b33bca8b5cba56767584079a19b SHA1: 274ba6143914d9dbf0cd7e2afba5d5ee4714b83c SHA256: 2880052b400d52cfa726fc6dae55db45cbcba5a16bdbc8b01ed739247e501629 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Read coverage calculator for metagenomics License: unknown Vendor: Institut Pasteur Package: gensoft-coverm-0.7.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5643 Depends: gensoft-dashing-v0.4.6, gensoft-gcc-9.2.0, gensoft-samtools-1.10, libc6, gensoft-bwa-mem2-2.2.1, gensoft-minimap2-2.28, gensoft-fastani-1.33 Filename: pool/main/gensoft-coverm-0.7.0_1.0_amd64.deb Size: 2426574 MD5sum: ec20d05a02a69102eb7421650fdfd5ad SHA1: c23d970d0c8ae74f1ba423052713d07d33ccfdd7 SHA256: 842ebada324f1685cc0289dae4b35816a99e16c8273b06730487a50585c5e82e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Read coverage calculator for metagenomics License: unknown Vendor: Institut Pasteur Package: gensoft-crac-2.5.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1456 Depends: libbz2-1.0, gensoft-htslib-1.10, gensoft-xz-5.2.4, libc6, zlib1g, gensoft-curl-7.68.0, gensoft-gzstream-1.5, libssl1.1, gensoft-gcc-9.2.0, gensoft-jellyfish-2.3.0 Filename: pool/main/gensoft-crac-2.5.0_1.0_amd64.deb Size: 534890 MD5sum: ec7f942b0365ecd3259a6c42578690a1 SHA1: 68a215276d2afb606d18628dc093e8da41bba49c SHA256: d198d4aa929ee92e891b091a5bbe45400be44384e1ef91107fa66c41c8b63f32 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool to analyze High Throughput Sequencing (HTS)), data in comparison to a reference genome License: unknown Vendor: Institut Pasteur Package: gensoft-cramino-0.14.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 14751 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-cramino-0.14.1_1.0_amd64.deb Size: 5049936 MD5sum: f624a233517d2109db26c77789130c77 SHA1: 2ea7bed436030912fcab6a0a44bee9f54e668d55 SHA256: 68ecbbd9f26d40383827a5cdb51566398659abce6d57d87a0a74a858eb84741f Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A tool for quick quality assessment of cram and bam files, intended for long read sequencing. License: unknown Vendor: Institut Pasteur Package: gensoft-crass-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 15774 Depends: libc6, libssl1.1, gensoft-xerces-c-3.2.2, gensoft-curl-7.68.0, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-crass-1.0.1_1.0_amd64.deb Size: 4616100 MD5sum: 47251218814fdc24495b5b6193f406fb SHA1: 456a925fc93291e900fc7a09e06656aa70c0fd9a SHA256: 85f6b97ddf3249c74256d98bae6b1d46751098d98f50bd4222af9428948f2f97 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Crass (The CRISPR Assembler) is a program that searches through raw metagenomic reads for Clustered Regularly Interspersed Short Palindromic Repeats License: unknown Vendor: Institut Pasteur Package: gensoft-crisprcasfinder-4.2.20 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 47392 Depends: libc6, gensoft-prodigal-2.6.3.pp1, libssl1.1, gensoft-adm-perl-5.30.1, gensoft-muscle-3.8.1551, gensoft-libxml2-2.9.10, gensoft-libiconv-1.16, libc6-dev, gensoft-vmatch-2.3.1, gensoft-expat-2.4.1, gensoft-emboss-6.6.0, gensoft-xz-5.2.5, gensoft-macsyfinder-1.0.5 Filename: pool/main/gensoft-crisprcasfinder-4.2.20_3.0_amd64.deb Size: 11283860 MD5sum: 330b2d26b6ca537fc39aab6becc49a7f SHA1: aa38a9a1f84040e1d7d8fec335a1f461e7989c6b SHA256: 49d6e104403a27970a2ba215e8fd1c3c435b930372daf70530d28d7ee7a3816d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: CRISPRCasFinder is an updated, improved, and integrated version of CRISPRFinder and CasFinder. 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The CSA library provides elementary connection-sets and operators for combining them. It also provides an iteration interface to such connection-sets enabling efficient iteration over existing connections with a small memory footprint also for very large networks. The CSA can be used as a component of neuronal network simulators or other tools. License: unknown Vendor: Institut Pasteur Package: gensoft-ctffind-4.1.14 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 952 Depends: libc6, gensoft-libtiff-4.1.0, gensoft-libjpeg-turbo-2.0.4, gensoft-xz-5.2.4, gensoft-fftw-3.3.8, gensoft-wxwidgets-3.1.3, gensoft-zlib-1.2.11, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-ctffind-4.1.14_1.0_amd64.deb Size: 434954 MD5sum: d30baaf32652388314ada671eca80f24 SHA1: d8ade9a3289481b9f5cd3bcfd9cad77c74576327 SHA256: 3925e03ac05983f31ee658c1892c7681aeb4e3768aab88bd383af61e0cbfb155 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: program for finding CTFs of electron micrographs License: unknown Vendor: Institut Pasteur Package: gensoft-ctpl-0.0.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 20 Depends: gensoft-gcc-9.2.0, gensoft-boost-1.72.0 Filename: pool/main/gensoft-ctpl-0.0.2_1.0_amd64.deb Size: 5270 MD5sum: d41dfcb6015ee3c8f6bfdba4436fcf29 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License: unknown Vendor: Institut Pasteur Package: gensoft-dash-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 386 Depends: gensoft-gcc-9.2.0, gensoft-plink-1.90b6.16, libc6 Filename: pool/main/gensoft-dash-1.1.0_1.0_amd64.deb Size: 110896 MD5sum: 47cc714007bc8f220ac8f90b8820d18d SHA1: 95afdf16b01aec5fb6391ed3e233ee3816eff087 SHA256: 5cc92f42991e269501bc7613a83699c27a49eef6ed3ae45aed8de7993e5a78c3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: DASH (DASH Associates Shared Haplotypes), that builds upon pairwise IBD shared segments to infer clusters of IBD individuals License: unknown Vendor: Institut Pasteur Package: gensoft-dashing-v0.4.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 8993 Depends: zlib1g, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-dashing-v0.4.6_1.0_amd64.deb Size: 2902412 MD5sum: 20e78ab2466b551239c24ffe835f7075 SHA1: 37242f38c0e3d9cbc3f1d239c3feb6e57ef219d7 SHA256: 478a9e12634d68b0c64199f22be1166bf163bbec6703fe2cb1f3842ab40031fb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Fast and accurate genomic distances using HyperLoglog License: unknown Vendor: Institut Pasteur Package: gensoft-dashing-v1.0.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 8878 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-dashing-v1.0.3_1.0_amd64.deb Size: 2901220 MD5sum: e13eb88d9758c86cf3577f5da7e9b28e SHA1: 9c81a33cf34a65e6ea0221fb74e34fe60285b664 SHA256: bbf7b018132862f8b8a8c62ffa55410f86b33ee45b44943fa5230739ac1021f3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Fast and accurate genomic distances using HyperLoglog License: unknown Vendor: Institut Pasteur Package: gensoft-datamash-1.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3115 Depends: libc6 Filename: pool/main/gensoft-datamash-1.6_1.0_amd64.deb Size: 1051704 MD5sum: 62af850cd407e64106a329537b8abdd7 SHA1: 92445ad07d03b5dbe7734bddd0d9ba5bf5e7b159 SHA256: 1e78e22f91e250d0e69e92143d51e72458cf3631f3081d295181b8998c2e1253 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GNU Datamash is a command-line program which performs basic numeric,textual and statistical operations on input textual data files. it is designed to be portable and reliable, and aid researchers to easily automate analysis pipelines, without writing code or even short scripts License: unknown Vendor: Institut Pasteur Package: gensoft-datamash-1.8 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3387 Depends: libc6 Filename: pool/main/gensoft-datamash-1.8_1.0_amd64.deb Size: 1148266 MD5sum: 8e8d6a7ce8db879cf6d285beb3c0ffaf SHA1: df47b2ee72c6ed433a13058f4f212c8ab30854dd SHA256: 01ef6f1cb125539298adcb1645320b2e8716e92284246296d8b23019c720dcb1 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: GNU Datamash is a command-line program which performs basic numeric,textual and statistical operations on input textual data files. it is designed to be portable and reliable, and aid researchers to easily automate analysis pipelines, without writing code or even short scripts License: unknown Vendor: Institut Pasteur Package: gensoft-dav1d-1.5.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2858 Depends: libc6 Filename: pool/main/gensoft-dav1d-1.5.1_1.0_amd64.deb Size: 980328 MD5sum: f06173321a63e11d9777a0689952df9d SHA1: 147858d7ccd9eeedbaed9b1f6a359cab9687f1b1 SHA256: 80159f5e67d5ee016b6898eed8bbbecd900dc748a2baa24640587eb4a14ae927 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: dav1d is an AV1 cross-platform decoder, open-source, and focused on speed and correctness License: unknown Vendor: Institut Pasteur Package: gensoft-db-18.1.32 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 121781 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-db-18.1.32_1.0_amd64.deb Size: 35811514 MD5sum: 092ce99f05d37046586dbd50ed3630a0 SHA1: 46c32f880b6cb1962d0da8686da1d44872fdac10 SHA256: 9f0187c545cff8d272e6aa4547a7cfb1db15c5527dd62fd9c20ca9d55fe63a75 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Berkeley DB is a family of embedded key-value database libraries providing scalable high-performance data management services to applications. The Berkeley DB package contains programs and utilities used by many other applications for database related functions. License: unknown Vendor: Institut Pasteur Package: gensoft-db-5.3.28 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 112261 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-db-5.3.28_1.0_amd64.deb Size: 32702310 MD5sum: 525989757b3614dc6ceb3015baa79b31 SHA1: 2ed6fa6108829bc9807aa93f7e36a9d766f7546f SHA256: 707f5d91c494fd321bc3378264009b4fe61d1468370677f78d57f38a37796feb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Berkeley DB is a family of embedded key-value database libraries providing scalable high-performance data management services to applications. The Berkeley DB package contains programs and utilities used by many other applications for database related functions. License: unknown Vendor: Institut Pasteur Package: gensoft-dbgwas-0.5.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 152542 Depends: gensoft-zlib-1.2.11, gensoft-gmp-6.2.0, gensoft-r-3.6.2, libc6, gensoft-libxml2-2.9.10, gensoft-fontconfig-2.13.91, gensoft-libpng-1.6.37, gensoft-xz-5.2.4, gensoft-libiconv-1.16, libbz2-1.0, gensoft-gcc-9.2.0, gensoft-freetype-2.10.1, gensoft-expat-2.2.9, zlib1g, gensoft-atlas-3.10.2 Filename: pool/main/gensoft-dbgwas-0.5.4_1.0_amd64.deb Size: 56934344 MD5sum: bc74c2b8fb91092c5f70047d2f6c0e30 SHA1: 0057b639570a12333f10c8f5ab519016f8b74e96 SHA256: fdff8f077809719247f3ea9c0dbcf83c255288f7daf10ca35a32932fb2660045 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: DBGWAS is a tool for quick and efficient bacterial GWAS. It uses a compacted De Bruijn Graph (cDBG) structure to represent the variability within all bacterial genome assemblies given as input. Then cDBG nodes are tested for association with a phenotype of interest and the resulting associated nodes are then re-mapped on the cDBG. The output of DBGWAS consists of regions of the cDBG around statistically significant nodes with several informations related to the phenotypes, offering a representation helping in the interpretation. The output can be viewed with any modern web browser, and thus easily shared. 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In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a single instance application or daemon, and to launch applications and daemons on demand when their services are needed. License: unknown Vendor: Institut Pasteur Package: gensoft-deepetpicker-1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4629152 Depends: gensoft-apptainer-1.3.2 Filename: pool/main/gensoft-deepetpicker-1.0_1.0_amd64.deb Size: 4712264806 MD5sum: 69b0c20a8d02f9707a4b13f9ac6f5953 SHA1: 5f4f530280f5e8f3d4ffb05d7908317a8c527b69 SHA256: cf65fc42138cb5f4e1d8a6235649e1289c35abaaa7f54171ecb77f136b168c12 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A deep learning based open-source software with a friendly user interface to pick 3D particles rapidly and accurately from cryo-electron tomograms License: unknown Vendor: Institut Pasteur Package: gensoft-deepsig-1.2.5 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1874431 Depends: zlib1g, gensoft-adm-python-3.8.1, libc6, libstdc++6, libgcc-s1 Filename: pool/main/gensoft-deepsig-1.2.5_1.0_amd64.deb Size: 656969484 MD5sum: 1a1f1da316bff87113756fd9e815d64e SHA1: af5624f22fba9d364e4246b824ae21da92145eaf SHA256: 3fc20c69dbe68df85081c6604e1a00b72e7963518e28a760b9e749273f98c2fe Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich and sORF-including annotations in machine-readable JSON & bioinformatics standard file formats for automatic downstream analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-deeptmhmm-1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4071801 Depends: zlib1g, libgcc-s1, libstdc++6, libc6, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-deeptmhmm-1.0_1.0_amd64.deb Size: 2379468462 MD5sum: 62a946322d620dee38dec55b4f09e43e SHA1: bff5041bf219e8d3f1be1746c9054594b19febab SHA256: b65b10297912649a69e83bf848c36333319949fd46510f435553ae9d4abce313 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A Deep Learning Model for Transmembrane Topology Prediction and Classification License: unknown Vendor: Institut Pasteur Package: gensoft-deeptools-3.4.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 501100 Depends: gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-deeptools-3.4.1_2.0_amd64.deb Size: 148823832 MD5sum: 823d1e46b3716d8aaa2c97348593ff72 SHA1: c33e8ddb9fab842f9ceb41e662c1a241c3faa363 SHA256: 86b76b53f831b2f1498e8cf3596180b915512c04da63f2be05b65dfb0ec556a3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: user-friendly tools for the normalization and visualization of deep-sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-deeptools-3.5.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 512107 Depends: gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-deeptools-3.5.4_1.0_amd64.deb Size: 147520402 MD5sum: 5c239c0ab02544bcad5941e679cfad2a SHA1: 66a1b872ee3da09b5d169224d55bb9ad8c512182 SHA256: 3257fdb1f47f22db26704b4a3aed472ae3fa19adc1d7e836d7496cff20fe2f5c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: user-friendly tools for the normalization and visualization of deep-sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-deepvariant-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6686219 Depends: gensoft-singularity-3.7.0 Filename: pool/main/gensoft-deepvariant-1.1.0_1.0_amd64.deb Size: 6829014272 MD5sum: d3ea3c6d176a39d78a1bfbd842ecc7c5 SHA1: d75c147da8e0b263a132426dcc1f24d948b3c8e0 SHA256: 9d2bbdfa0a9e6e316c94af952aca0b395705fc4d1f4490c08422963c48096279 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classifies each tensor using a convolutional neural network, and finally reports the results in a standard VCF or gVCF file. License: unknown Vendor: Institut Pasteur Package: gensoft-deepvirfinder-1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1754759 Depends: libgcc-s1, gensoft-adm-python-3.6.15, libstdc++6, gensoft-cuda-10.2, gensoft-gcc-9.2.0, gensoft-cudnn-10.2-v7.6.5.32, libc6 Filename: pool/main/gensoft-deepvirfinder-1.0_1.0_amd64.deb Size: 566262322 MD5sum: 1e31b645a93278363d2877a092a71050 SHA1: 333bbbab818f7a1a400876cbc5f07f5a2f1ab8e4 SHA256: 0363acb528b147320bf2496156e0cd051c62e4d09f3bf02bd6d530846211a9c0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Identifying viruses from metagenomic data by deep learning License: unknown Vendor: Institut Pasteur Package: gensoft-defense-finder-1.0.8 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 175618 Depends: libstdc++6, gensoft-hmmer-3.3.2, gensoft-adm-python-3.8.1, zlib1g, libgcc-s1, libc6 Filename: pool/main/gensoft-defense-finder-1.0.8_1.0_amd64.deb Size: 61415066 MD5sum: 2793858350d2b0f038b9267301605e58 SHA1: 809263fde59893d79f1965363c8343dbe9a2f64e SHA256: 7a521f62c2439f518a7b6fa01fa01b0a9ad26ee2b5fbef792563bed22843c21f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: DefenseFinder is a program to systematically detect known anti-phage systems License: unknown Vendor: Institut Pasteur Package: gensoft-defense-finder-1.1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 185398 Depends: libstdc++6, gensoft-adm-python-3.8.1, libgcc-s1, libc6, zlib1g, gensoft-hmmer-3.3.2 Filename: pool/main/gensoft-defense-finder-1.1.1_1.0_amd64.deb Size: 65389008 MD5sum: 651b2cdccaf366791e1cce22092e04db SHA1: 0c4927a3ed46336ba399905afd9a861776345af5 SHA256: 3d2cb4814d743730dd549b0ccb96d224ef04cb3339e8c3e3ce22b9ae0cb1ec4e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: DefenseFinder is a program to systematically detect known anti-phage systems License: unknown Vendor: Institut Pasteur Package: gensoft-defense-finder-1.2.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 295363 Depends: zlib1g, libc6, gensoft-adm-python-3.8.1, libstdc++6, libgcc-s1, gensoft-hmmer-3.4 Filename: pool/main/gensoft-defense-finder-1.2.0_2.0_amd64.deb Size: 90425668 MD5sum: 1ab55fd0ea18135f5861909debe52226 SHA1: 4c3dd60d37ed42bd24d7fb1c5c18c3fcae13bea8 SHA256: f87dda3cdc8bc24af83ffde6f8f4f2bd9f5ad773557f6b57d5ec8c7b7b4d3a41 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: DefenseFinder is a program to systematically detect known anti-phage systems License: unknown Vendor: Institut Pasteur Package: gensoft-defense-finder-1.2.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 295307 Depends: libstdc++6, zlib1g, gensoft-adm-python-3.8.1, libc6, gensoft-hmmer-3.4, libgcc-s1 Filename: pool/main/gensoft-defense-finder-1.2.2_1.0_amd64.deb Size: 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systems License: unknown Vendor: Institut Pasteur Package: gensoft-defense-finder-2.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 210525 Depends: libgcc-s1, gensoft-hmmer-3.4, libstdc++6, libc6, gensoft-adm-python-3.10.7, zlib1g Filename: pool/main/gensoft-defense-finder-2.0.0_1.0_amd64.deb Size: 75465472 MD5sum: 38f7dfee85c711108afe8e37f27a763f SHA1: c8f7b015685eec6cc85ad7855a6e70bc67a8da1b SHA256: f3f610ed45be81a522b1aeca6140582ef95fd78e877ab128f5d0ddfc80644e3a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: DefenseFinder is a program to systematically detect known anti-phage systems License: unknown Vendor: Institut Pasteur Package: gensoft-deformetrica-4.3.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 4594199 Depends: gensoft-singularity-3.8.5 Filename: pool/main/gensoft-deformetrica-4.3.0_1.0_amd64.deb Size: 4688532404 MD5sum: 2d8f0c0f7b306f2a960b91a421d28f1e SHA1: 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License: unknown Vendor: Institut Pasteur Package: gensoft-delly-0.8.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 823 Depends: gensoft-xz-5.2.4, libc6, zlib1g, gensoft-curl-7.68.0, gensoft-boost-1.72.0, gensoft-zstd-1.4.4, gensoft-gcc-9.2.0, libbz2-1.0, gensoft-htslib-1.10 Filename: pool/main/gensoft-delly-0.8.2_1.0_amd64.deb Size: 293962 MD5sum: 3d04d6d06f0b46da3b34f338c2b35465 SHA1: ea900c34c6a4b615927986ca66f21c78ad92d0d1 SHA256: a8c684fef629d2d92860d4ad42a54c9d096a84d39f941336bc26aa92cb9cfad4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an integrated structural variant prediction method that can detect deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. 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License: unknown Vendor: Institut Pasteur Package: gensoft-demuxlet-0.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5065 Depends: gensoft-xz-5.2.4, zlib1g, libbz2-1.0, gensoft-gcc-9.2.0, libssl1.1, libc6, gensoft-htslib-1.10, gensoft-curl-7.68.0 Filename: pool/main/gensoft-demuxlet-0.1.0_1.0_amd64.deb Size: 1518900 MD5sum: 55887e654aaaea41fae1470c6a119a5e SHA1: f09ba70ceb5a2ce869777cb6ea7026b99c07f607 SHA256: 1073a5e9109757bad79614315ee34c8aa3fc07f7498b658aaf7797797bfe527e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a software tool to deconvolute sample identity and identify multiplets when multiple samples are pooled by barcoded single cell sequencing. 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It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000. License: unknown Vendor: Institut Pasteur Package: gensoft-diffmap-120330 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 372 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-diffmap-120330_1.0_amd64.deb Size: 39512 MD5sum: e9896142c9c8593a5b568f605d196853 SHA1: bf6d47a38112bfbcb0a7f0473a6a9ce900703d50 SHA256: ae499bcd32f3a8ab4ad8e220b12024763a207e2c044a4ff06783aec5309a81cd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program to calculate difference maps between two density maps. License: unknown Vendor: Institut Pasteur Package: gensoft-diffreps-1.55.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 84960 Depends: gensoft-adm-perl-5.30.1, gensoft-bedtools-2.29.2, libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-diffreps-1.55.6_1.0_amd64.deb Size: 20804056 MD5sum: e8c2b91e03815167ea226b0f63fc9e4a SHA1: 6aefb961c72576958683819d7cc4b8a145a0b7f4 SHA256: b2baea2f0676720a699a5aec36cdbf009fd3f307da220df0ede63d4ebb201f0d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Differential analysis for ChIP-seq with biological replicates. This software is developed to find different peaks in ChIP-seq. It scans the whole genome using a sliding window, performing millions of statistical tests and report the significant hits. It takes into account the biological variations within a group of samples and uses that information to enhance the statistical power. Considering biological variation is of high importance, especiallly for in vivo brain tissues License: unknown Vendor: Institut Pasteur Package: gensoft-digis-1.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 136965 Depends: gensoft-blast+-2.12.0, zlib1g, libc6, libgcc-s1, gensoft-adm-python-3.8.1, gensoft-hmmer-3.3 Filename: pool/main/gensoft-digis-1.2_1.0_amd64.deb Size: 39717228 MD5sum: 6b1fd0c5c5fc35ff75ac9777b1bb7779 SHA1: 4cd8c22ab0dcb98d8b484a2e7987d4fcad9ef5f1 SHA256: 37958e02a699e3ad8a1b0dd7a5210644e61de4f6a044e4ca646c92d5caa1af08 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes License: unknown Vendor: Institut Pasteur Package: gensoft-dlib-19.19 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 18991 Filename: pool/main/gensoft-dlib-19.19_1.0_amd64.deb Size: 3374562 MD5sum: 6ea75b1f1c9ae128985c5dd812b77842 SHA1: f2631b5bc8f96cb28fbfd9069d3e02366f72a439 SHA256: 6a99d0592a4e20ca0f02ae0504cc14fd63bc142767fa4a288f12fcb1ebf78769 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Dlib is a general purpose cross-platform open source software library written in the C++ programming language. 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License: unknown Vendor: Institut Pasteur Package: gensoft-dmtcp-2.6.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 228525 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-dmtcp-2.6.0_1.0_amd64.deb Size: 66636816 MD5sum: b9a2b430c2acc55fd73d60caedacfca3 SHA1: 45a034ea0bf0edc21780a51117a7d8221f419665 SHA256: 1abbc60d1f9f45e7b1fe265b0c745d2191c3208429b7921c6fc0857fe937ef2b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: DMTCP is a tool to transparently checkpoint the state of multiple simultaneous applications, including multi-threaded and distributed applications. It operates directly on the user binary executable, without any Linux kernel modules or other kernel modifications. 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License: unknown Vendor: Institut Pasteur Package: gensoft-dogpicker-0.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 176041 Depends: gensoft-adm-python-2.7.17, libgcc-s1, libc6, libstdc++6 Filename: pool/main/gensoft-dogpicker-0.2.1_1.0_amd64.deb Size: 45984212 MD5sum: f9f64f2c226f4f69e4c0ad3da1153fe1 SHA1: afdba73fb92fe40acbdb10b720f98a82befe3658 SHA256: 944563f48008bd4db492365dd089dde200b1180a9b466866ed176527684b1afd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Particle picker that uses difference of Gaussians (DoG) for picking particles License: unknown Vendor: Institut Pasteur Package: gensoft-dorado-0.2.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3755256 Filename: pool/main/gensoft-dorado-0.2.1_2.0_amd64.deb Size: 2138014370 MD5sum: 2ca859f94a8063d15ad5b956b1a8c3c7 SHA1: ce8ff4377d5b4f58add5541b14d8d13915a9849b SHA256: c75ccbc1dd99354947e6bf7b66e0200fe04a07b8f5d9eb5e67db9519540f260c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads. 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License: unknown Vendor: Institut Pasteur Package: gensoft-doxygen-1.8.17 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 16927 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-doxygen-1.8.17_1.0_amd64.deb Size: 4794412 MD5sum: 61be2a1cd234696f0f9add5e1d5e4011 SHA1: 4584397e53c791138107d46d8de7bba3b90b32dd SHA256: a898fa2d86b4427030045b2b7c56b2b982683f43d442da0e68792ffceee6e83b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Doxygen is the de facto standard tool for generating documentation from annotated C++ sources, but it also supports other popular programming languages such as C, Objective-C, C\#, PHP, Java, Python, IDL (Corba, Microsoft, and UNO/OpenOffice flavors), Fortran, VHDL, Tcl, and to some extent D. 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License: unknown Vendor: Institut Pasteur Package: gensoft-dram-1.5.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 468725 Depends: gensoft-adm-python-3.10.7, gensoft-parallel-20200222, libgcc-s1, gensoft-prodigal-2.6.3.pp1, gensoft-barrnap-0.9, gensoft-hmmer-3.3.2, libc6, gensoft-mmseqs2-13-45111, zlib1g, gensoft-trnascan-se-2.0.12, libstdc++6 Filename: pool/main/gensoft-dram-1.5.0_1.0_amd64.deb Size: 144909464 MD5sum: 0529ec31a92f915a14f54fcf4e640b2b SHA1: 559bc9586462a50b4505a42b1bfd581c624ddf73 SHA256: 00fc7897f743583f5586b560ba68c9a08e8b812205ba2ae441288022499e84b2 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Distilled and Refined Annotation of Metabolism. A tool for the annotation and curation of function for microbial and viral genomes License: unknown Vendor: Institut Pasteur Package: gensoft-drep-3.2.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 362692 Depends: zlib1g, libc6, gensoft-checkm-1.1.3, gensoft-anicalculator-v1, gensoft-prodigal-2.6.3.pp1, gensoft-adm-python-3.8.1, libgcc-s1, gensoft-mummer-3.23, gensoft-qsimscan-1.0, libstdc++6, gensoft-fastani-1.33, gensoft-mash-2.2 Filename: pool/main/gensoft-drep-3.2.2_2.0_amd64.deb Size: 115422672 MD5sum: 09e4e68ad39e132948e5199d0cd3c681 SHA1: 6c552dc0ac048ffeebda43caeecae015805659b1 SHA256: 1c8c2df40e046f2fe06263dbabb53652cced1ef2fd276723738dcfe9656c90bf Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: program for rapidly comparing large numbers of genomes. dRep can also de-replicate a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set. 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It supports both fasta (assembled) and fastq (raw reads) file formats. The tool provides convenient species identification coupled to quality control module giving a complete, transparent and reference laboratories suitable report on E.coli serotyping, Shiga toxin typing and pathotyping. License: unknown Vendor: Institut Pasteur Package: gensoft-edirect-18.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 25584 Depends: gensoft-expat-2.4.1, gensoft-adm-perl-5.30.1, libc6, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-edirect-18.2_1.0_amd64.deb Size: 14324280 MD5sum: be59b782e0a71fa99134b10bfed4b5b5 SHA1: 40c0ef4dd46dc1b9de33816f87c79fb6691e9d2c SHA256: 64a814035323fa02ef9ad72f0479618bdbece411cd2dae5fbe0970fd642f8923 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Entrez Direct (EDirect) is an advanced method for accessing the NCBI s set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process. License: unknown Vendor: Institut Pasteur Package: gensoft-efasta-1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3563 Depends: zlib1g, libc6 Filename: pool/main/gensoft-efasta-1.2_1.0_amd64.deb Size: 1132570 MD5sum: 4f9a7a33b22f9b3597f04c6ac421aa55 SHA1: 73ba108f49dcda8ccd5b7a572393e8f8e77e81ed SHA256: 28fd34cff31ec961bc29da22e3f429a8610ba868f8eff367d5d1b04adcec47df Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: extracting nucleotide segments from FASTA file License: unknown Vendor: Institut Pasteur Package: gensoft-egglib-3.0.0b21 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6511 Depends: libc6, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-egglib-3.0.0b21_1.0_amd64.deb Size: 4469364 MD5sum: d2e89425be0354e55a15371755b78c30 SHA1: 7c892b402368dde611959932b2d8d38841e6f3bc SHA256: 6e36d54cbeeb96eb99988e47998cf6b4e026b91604d59e24e4bb523b20695c94 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: EggLib is a C++/Python library and program package for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations. 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License: unknown Vendor: Institut Pasteur Package: gensoft-elfio-3.9 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 205 Filename: pool/main/gensoft-elfio-3.9_1.0_amd64.deb Size: 41124 MD5sum: 135dd2fc64f624da9df63ea18dde0181 SHA1: 727a17dfe7f2bc241feba3e20289dedb19144e56 SHA256: 2359e6683dc7bfa127c8290e6aa4dfc0f293d3789d12a9c59cc5168e8b65e204 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ELF (Executable and Linkable Format) reader and producer implemented as a header only C++ library License: unknown Vendor: Institut Pasteur Package: gensoft-elp-3.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 113194 Depends: gensoft-mfold-util-4.6, gensoft-adm-python-2.7.17, gensoft-unafold-3.8 Filename: pool/main/gensoft-elp-3.0_2.0_amd64.deb Size: 37273798 MD5sum: bc2574d342f643fad2e91e8245d6cf8b SHA1: 61256bef94b5869a6efa160171ff33089c372648 SHA256: dcfe02b6b1fc4fd736632a890efd8ae25a1f5a12c50a6379fab137574c241a31 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Compute synonymous sequences that maximize protein evolutionary landscape exploration License: unknown Vendor: Institut Pasteur Package: gensoft-elph-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 299 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-elph-1.0.1_1.0_amd64.deb Size: 115676 MD5sum: 36cb4271f0fb645bac50c4e5c06fd2cd SHA1: 2f0b72baf31e2a97ece59c2a8f676113a52a7318 SHA256: ab8d23082cbe6e209b21630eb854c2cd225ffb0feeaf7d2cdabc2f48116c9fa5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a general-purpose Gibbs sampler for finding motifs in a set of DNA or protein sequences. 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License: unknown Vendor: Institut Pasteur Package: gensoft-epi2me-wf-metagenomics-2.12.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2648 Depends: gensoft-nextflow-24.04.2, libc6, gensoft-graalvm-ce-java19-22.3.1, gensoft-apptainer-1.3.5 Filename: pool/main/gensoft-epi2me-wf-metagenomics-2.12.1_1.0_amd64.deb Size: 2114352 MD5sum: 3b45737e52d5408370da10d86607d43d SHA1: 65705efb44b9b9ee60d300463c3a1960d64ec1ab SHA256: 6e2e47e96591cccee09f15c783665a902491f6d9c5d5ce19c453e452e9bfa4da Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Taxonomic classification from shotgun metagenomics sequencing. License: unknown Vendor: Institut Pasteur Package: gensoft-epi2me-wf-single-cell-2.4.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 44849 Depends: gensoft-nextflow-24.04.2, gensoft-graalvm-ce-java19-22.3.1, gensoft-apptainer-1.3.5, libc6 Filename: pool/main/gensoft-epi2me-wf-single-cell-2.4.0_1.0_amd64.deb Size: 32346732 MD5sum: 2a3f515fce5252329b91b2244cd94aeb SHA1: a9a83a9a1a12a95517206e076f91edb017a82e8a SHA256: 8073c8b888f91342c6e9b71ddad5b668814896009f2f4c800da677904d81bd6f Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: suite of nextflow worflows to deal with Oxford Nanopore Technologies reads License: unknown Vendor: Institut Pasteur Package: gensoft-ete-3.1.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 300452 Depends: gensoft-fasttree-2.1.11, gensoft-dialign-tx-1.0.2, gensoft-kalign-2.04, gensoft-ruby-2.7.0, gensoft-fasta-3.8h, libbz2-1.0, gensoft-lapack-3.10.0, gensoft-adm-python-2.7.17, libc6, gensoft-clustal-omega-1.2.4, gensoft-phyml-3.3.20190909, gensoft-adm-python-3.8.1, gensoft-trimal-1.4.1, zlib1g, gensoft-raxml-8.2.12, gensoft-mafft-7.467, gensoft-iq-tree-2.0.6, gensoft-muscle-3.8.31, gensoft-gcc-9.2.0, gensoft-paml-4.9j Filename: pool/main/gensoft-ete-3.1.2_1.0_amd64.deb Size: 99718564 MD5sum: 1b1970f28181e02b5281e2ff0f52e444 SHA1: fb03ace17e40dcd5cdca55ff6fcfbd048a3f5e67 SHA256: a330a5b6993d0abd26bbea581104d24cfc879a2979ac244fd78f87b2f7ad7d0b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a collection of command line tools to run common operations in phylogenetics and comparative genomics License: unknown Vendor: Institut Pasteur Package: gensoft-evaporativecooling-2009-03-25 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 9644 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-evaporativecooling-2009-03-25_1.0_amd64.deb Size: 4866856 MD5sum: 920158e8c356575bf333130effdea46c SHA1: c4bbac2e8c7799bf7ddf7d2aa7c1509bcd80d415 SHA256: 955df82794174c8bac3681edd42a92ce809104f91f4f094afc72347a100ab677 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program for filtering genetic association data. License: unknown Vendor: Institut Pasteur Package: gensoft-evince-3.36.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 137548 Depends: gensoft-singularity-3.8.1 Filename: pool/main/gensoft-evince-3.36.7_1.0_amd64.deb Size: 139428550 MD5sum: 8d61a4187f14f0f53cbe5ad4018073c1 SHA1: 7c85db97d3742a2758f462c6f123c3ddc785a402 SHA256: 2a2932f5bd17f0964b1aa5dc4aaf611c5f956fb3f302a43b93a11913437f81d2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Evince is a document viewer for multiple document formats. Evince is specifically designed to support the file following formats - PDF, Postscript, djvu, tiff, dvi, XPS, SyncTex support with gedit, comics books (cbr,cbz,cb7 and cbt). License: unknown Vendor: Institut Pasteur Package: gensoft-exonerate-2.4.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 20545 Depends: gensoft-glib-2.58.3, libc6 Filename: pool/main/gensoft-exonerate-2.4.0_1.0_amd64.deb Size: 7639844 MD5sum: 3be08d5a90978396031c388395275d26 SHA1: 957d371c4a35b667231427a4b6fba5507c6e2210 SHA256: 4f26acae664bcb5e9eefd68cdb38ef3a4d4a592bbf11dab5ccb33f8416bea48b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. License: unknown Vendor: Institut Pasteur Package: gensoft-expat-2.2.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1809 Depends: libc6 Filename: pool/main/gensoft-expat-2.2.9_1.0_amd64.deb Size: 540004 MD5sum: 93f905731db6fad20206c9a89fc30edc SHA1: 3baa7110b69c063ccb09cbde4453704c4a979144 SHA256: a371eb5f7ebe6a838bdb933b29a089860428b270d9989053d210a01834da2e6b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document License: unknown Vendor: Institut Pasteur Package: gensoft-expat-2.4.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1991 Depends: libc6 Filename: pool/main/gensoft-expat-2.4.1_1.0_amd64.deb Size: 595782 MD5sum: 19edc4b8fd2f0cbc61468e2888ba504e SHA1: 0bd2c16766baaed7a3ff0e02be468a895272203a SHA256: e3e2521a7e2f5cb36f4af038e69cf8c0483c2b3ef8fa7d712a1bace6de1c5fb7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document License: unknown Vendor: Institut Pasteur Package: gensoft-express-1.5.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 28431 Depends: gensoft-gcc-9.2.0, libc6, zlib1g, gensoft-libbam-2.5.1 Filename: pool/main/gensoft-express-1.5.3_1.0_amd64.deb Size: 7975862 MD5sum: 87d7e0c5fb47b0c243f5b83b0f8d060d SHA1: a565b6f8661643548fd52f63a61ad565f0a1edb1 SHA256: 31dd26f8a30ea8a1a6c9281384b94a6297f9d22d215c4650f08536842da5ef68 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences. License: unknown Vendor: Institut Pasteur Package: gensoft-extend-align-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 198065 Depends: gensoft-adm-python-2.7.17, libgcc-s1, libstdc++6, libc6 Filename: pool/main/gensoft-extend-align-1.0_1.0_amd64.deb Size: 59102252 MD5sum: 3474af22efbe13c42991a244b2676c93 SHA1: 7e04efb86be5c3aacdd2cc405385065ccc8b717f SHA256: 411b168a8ac4148c16335a05ffcfde3f68af5f59f71a53e8cf7a8ead631c6f56 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: concatenate several alignments from several files (one per file ) License: unknown Vendor: Institut Pasteur Package: gensoft-extract-genes-abricate-2022-02-08 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 142485 Depends: libc6, gensoft-adm-python-3.8.1, libgcc-s1, zlib1g, gensoft-seqtk-1.3, libstdc++6 Filename: pool/main/gensoft-extract-genes-abricate-2022-02-08_1.0_amd64.deb Size: 42988162 MD5sum: 52f01b4cbf2c5cf7c575f465477b2a24 SHA1: e040494f232070e06bf75b7c2bae7ffd8dcbccb9 SHA256: 0e1e992c236173a21957c6a1d3bde15c5f08d179dfffc311fd42ab44d71ede12 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Small script to use ABRicate output to extract genes from genome assemblies, reverse complement if necessary, and print to a file License: unknown Vendor: Institut Pasteur Package: gensoft-extractcds-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3 Depends: gensoft-libiconv-1.16, gensoft-expat-2.2.9, gensoft-adm-perl-5.30.1, libc6, gensoft-libxml2-2.9.10, gensoft-xz-5.2.4 Filename: pool/main/gensoft-extractcds-1.0_1.0_amd64.deb Size: 2798 MD5sum: 116761d911cbbef58d4986ec1da4101d SHA1: 81a4965e216b0d2a8c6b44265a065af247cfe3e9 SHA256: 20034ad1d319c22a42eb298128dfc83faa8d73083a2297950b495dffbb878240 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Extracts translation(s) from a Genbank or Embl entry License: unknown Vendor: Institut Pasteur Package: gensoft-extrae-3.7.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 523574 Depends: gensoft-extrae-3.7.1, zlib1g, gensoft-libxml2-2.9.10, gensoft-openmpi-4.0.5, gensoft-gcc-8.4.0, libc6, gensoft-papi-5.7.0, gensoft-libunwind-1.3.1, gensoft-libiconv-1.16, gensoft-binutils-2.33.1, gensoft-xz-5.2.4 Filename: pool/main/gensoft-extrae-3.7.1_1.0_amd64.deb Size: 147800268 MD5sum: af314532793f67a074a212372ecfaaa2 SHA1: ece19bc35a5d504bf3211aaac63d15c5b80e1ba5 SHA256: 06fd2bde80463b979c766f29aafffc861479f56871fd51f4c9d2c954d99ec5e2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Extrae is the package devoted to generate Paraver trace-files for a post-mortem analysis. Extrae is a tool that uses different interposition mechanisms to inject probes into the target application so as to gather information regarding the application performance. License: unknown Vendor: Institut Pasteur Package: gensoft-ezclermont-0.7.0-rc Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 98845 Depends: libgcc-s1, zlib1g, gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-ezclermont-0.7.0-rc_1.0_amd64.deb Size: 29129810 MD5sum: dd293228c6a8ef8f12fefbc593a85fcc SHA1: 3fe6e452ca2af4ea0d57bbd93a9503bea2f75c29 SHA256: e28c56dc4cabdf7b911a4e6bb6fb5dd44269d2a002c5b3a493edc84bc1346303 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tool for using the Clermont 2013 PCR typing method for in silico analysis of E. coli whole genomes or assembled contigs. License: unknown Vendor: Institut Pasteur Package: gensoft-famsa-1.6.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 691 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-famsa-1.6.2_1.0_amd64.deb Size: 250994 MD5sum: dc82aec256ff9cbebfd6011ee21cc60a SHA1: ebcadd1c5074a3b08947dcf3c8126825d0bd4cdf SHA256: 64270024e03611ecba3fc3929c3372766d367df5994f5b417ff3cd17c7a0d55f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Algorithm for large-scale multiple sequence alignments License: unknown Vendor: Institut Pasteur Package: gensoft-fast5-0.6.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 211 Depends: gensoft-hdf5-1.10.6 Filename: pool/main/gensoft-fast5-0.6.5_1.0_amd64.deb Size: 39252 MD5sum: 2f42d034b86d215b54ba467afae7304b SHA1: eb0df0992bb98ad9ff32c7f1a9fc2fe5cf054acb SHA256: 6fd595e3e63ee0c947f28cae16acb97a5c95b0c4b4e9c9da3c6cc47dbf4b6c7c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A lightweight C++ library for accessing Oxford Nanopore Technologies sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-fasta-3.6 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 11889 Depends: zlib1g, libc6 Filename: pool/main/gensoft-fasta-3.6_2.0_amd64.deb Size: 4682470 MD5sum: b5f9a7ed4d196e180d0755a5931d0ccb SHA1: 7fc13312f7f39d5d5e1277b1b3d6ec895ef64c7d SHA256: 9b4116801efb1af13811185748abd9a681ec8298ca7e1f8c1b72ec0f7ea34006 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: The FASTA package provides a modular set of sequence comparison programs License: unknown Vendor: Institut Pasteur Package: gensoft-fasta-3.8h Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 12483 Depends: libc6 Filename: pool/main/gensoft-fasta-3.8h_1.0_amd64.deb Size: 4980118 MD5sum: 260d53bf45baa3f44587a9e13be6caf9 SHA1: 5d0a3b861a31c7ada5dfdbae594d1af59cb97952 SHA256: 690a16ff480b2836a9ba13dc627fb56e5ba23f39efcec3bf0707d4cd0145ac8b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The FASTA package provides a modular set of sequence comparison programs License: unknown Vendor: Institut Pasteur Package: gensoft-fasta2agp-2.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6791 Filename: pool/main/gensoft-fasta2agp-2.0_2.0_amd64.deb Size: 2535918 MD5sum: 9b95ff76a4cf33101e334c714de6b6cf SHA1: 00ac54f6b68e420d34768af0c4ff681ed616f009 SHA256: 4cea4c39044fa735426a52246d3a2f2735678c8429ed5ccd32dce03439875a95 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Creating an AGP file from a FASTA-formatted scaffold sequence file License: unknown Vendor: Institut Pasteur Package: gensoft-fastaextract-0.03 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 68 Depends: libc6, gensoft-squizz-0.99c Filename: pool/main/gensoft-fastaextract-0.03_1.0_amd64.deb Size: 15048 MD5sum: 16ebd910c5d8d1accbd78a29b576c519 SHA1: 864d8f83cb37b72b86ed058f5d1b96ae7f0dd2eb SHA256: 0f023e3c28d105c80f70a5cdf0ac9a12c006ef9be9c8f553ef244387978e8af6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: extract or exclude entries by name from fasta formatted files. License: unknown Vendor: Institut Pasteur Package: gensoft-fastahack-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 297 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-fastahack-1.0.0_1.0_amd64.deb Size: 104134 MD5sum: 7408c21b5706e9bf226028fc45af6228 SHA1: 42babb2f73baf3b01df1e412c6e9824e4ed0b626 SHA256: 15ff3c3fa96c46e091c7356b21aefc92fddca87d2afef08c127f3b9fef79dab6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Transmembrane topology prediction License: unknown Vendor: Institut Pasteur Package: gensoft-fastani-1.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 42210 Depends: gensoft-gsl-2.6, libc6, zlib1g, libquadmath0, gensoft-gcc-9.2.0, gensoft-r-3.6.2 Filename: pool/main/gensoft-fastani-1.3_2.0_amd64.deb Size: 16086638 MD5sum: 187ac636ad3a7187ae44a6db73b00994 SHA1: b02ab13201d6b980249f5f6ed63ac855d26b07f5 SHA256: d11d23e9e158328c843ad6e01a7e272d927745d5be3f5531ee8f6c04d395a9fe Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). 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FastANI supports pairwise comparison of both complete and draft genome assemblies. License: unknown Vendor: Institut Pasteur Package: gensoft-fastani-1.34 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 52906 Depends: libc6, gensoft-r-4.4.0, gensoft-gsl-2.6, zlib1g, libquadmath0, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-fastani-1.34_1.0_amd64.deb Size: 21058552 MD5sum: 4d32bc041a9e065dcc96aecedab659d9 SHA1: 4204fdcf990c9ec616e5126285b815190610ec9a SHA256: eeb56463903ae069360ca10fae15765b4f99239228182566fd0a09bcea9d2e0a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies. License: unknown Vendor: Institut Pasteur Package: gensoft-fastarename-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-fastarename-1.0_1.0_amd64.deb Size: 3944 MD5sum: 3a4275d0f7158d9579c901352848038a SHA1: 1c18218df2258c61f958872656f36ae951386917 SHA256: fa3b960098ae018a9c135a13a3ab6707ef958331b2249411a5aca2891365126a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: parse a file with fasta sequences replace the identifier of a fasta sequences by a short identifier and generate a file with renamed fasta sequences and a file of mapping License: unknown Vendor: Institut Pasteur Package: gensoft-fastcodeml-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2275 Depends: gensoft-nlopt-2.6.1, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-fastcodeml-1.1.0_1.0_amd64.deb Size: 506244 MD5sum: 7b3e1d622e7b73a27de0a85070ac88af SHA1: f5a571a83944eae6b121ea0fa5ad26049e39be71 SHA256: 7bd272eb0a6397be12ee450c25bb2d5e75b6fb9fae2be0baf1ee11975e45db67 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FastCodeML is a software to infer positive selection along positions of a protein coding gene using the Branch-Site model of evolution (Yang and Nielsen, 2002, Mol Biol Evol). License: unknown Vendor: Institut Pasteur Package: gensoft-fastdnaml-1.2.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 252 Depends: libc6 Filename: pool/main/gensoft-fastdnaml-1.2.2_1.0_amd64.deb Size: 87746 MD5sum: 939fb2f09052e14f3b52894d03c8a9c9 SHA1: 220507e59ae72393f6cfecb0ec4e5d663430efca SHA256: 18a13223cfd5d327afd749384dae2eee82ff54419c590190750bc41a7741d5b9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Program for estimating maximum likelihood phylogenetic trees from nucleotide sequences License: unknown Vendor: Institut Pasteur Package: gensoft-fastgear-na Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1942883 Depends: libexpat1, libxml2, libtinfo5, libc6, libpcre2-8-0, libblkid1, libffi7, libpcre3, libglib2.0-0, libstdc++6, libquadmath0, libselinux1, zlib1g, libmount1, liblzma5, libgcc-s1, libicu66, libcrypt1, libncurses5 Filename: pool/main/gensoft-fastgear-na_1.0_amd64.deb Size: 932880652 MD5sum: 00131cfe86ca320532c8ad5f342a1022 SHA1: a1c7a8ad9e5bf9b5873e465088eea4f2e57f5413 SHA256: b6515579e507287cea434239bda0bbcc5f742c5c2078047160e4792fd76696d0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fastGEARis a software for analysing sequence alignments License: unknown Vendor: Institut Pasteur Package: gensoft-fastglobetrotter-a1dc395 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 5204 Depends: libc6, gensoft-r-4.1.0, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-fastglobetrotter-a1dc395_1.0_amd64.deb Size: 4770388 MD5sum: 0342b8a9d5720bd2d062c8e462c84986 SHA1: e9e10d295a29cb45b1675629f8af54420f1a94ae SHA256: 4b363aaaa2cc29fa1363a02ad77b890a3dfc23a8c458cfd882f88d78b8809803 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: haplotype-based admixture inference and dating software License: unknown Vendor: Institut Pasteur Package: gensoft-fastlink-4.1p Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2993 Depends: libc6 Filename: pool/main/gensoft-fastlink-4.1p_1.0_amd64.deb Size: 1555438 MD5sum: ee33396a422a1d3185160cafc0c98bc9 SHA1: bdc5f1e08332fb0d9b004e47a6999ef9c2bc8528 SHA256: 88ddc8bfd6eb0a98cad4a034dab3efdb66ad9bff41f3f7171f8ac2c2b72f1933 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Genetic Analysis Software License: unknown Vendor: Institut Pasteur Package: gensoft-fastme-2.1.6.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 280 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-fastme-2.1.6.1_2.0_amd64.deb Size: 132432 MD5sum: 5aab404aba20d36a8fddb23f4e748cf8 SHA1: 579dc71dee62ccf380a5e55e249ed10488fc5f54 SHA256: 6eda82c0cc18fb55ae21b4ec6b427f1f98c1bee08e6e6dbd69f5d1061637fc27 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FastME provides distance algorithms to infer phylogenies. FastME is based on balanced minimum evolution, which is the very principle of NJ. FastME improves over NJ by performing topological moves using fast, sophisticated algorithms. The first version of FastME only included Nearest Neighbor Interchange (NNI). The new 2.0 version also includes Subtree Pruning and Regrafting (SPR), while remaining as fast as NJ and providing a number of facilities distance estimation for DNA and proteins with various models and options, bootstrapping, and parallel computations. License: unknown Vendor: Institut Pasteur Package: gensoft-fastme-2.1.6.2 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 279 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-fastme-2.1.6.2_3.0_amd64.deb Size: 130820 MD5sum: 4d161da262934280dc2376230b578c94 SHA1: 5878e7a59390be156b9abf9a0300428b690c6e3e SHA256: 06482c22e7d896c3edd8564eb70aeb5eeb6758e7c2282497ac53ab0f51dc5afd Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: FastME provides distance algorithms to infer phylogenies. FastME is based on balanced minimum evolution, which is the very principle of NJ. FastME improves over NJ by performing topological moves using fast, sophisticated algorithms. The first version of FastME only included Nearest Neighbor Interchange (NNI). The new 2.0 version also includes Subtree Pruning and Regrafting (SPR), while remaining as fast as NJ and providing a number of facilities distance estimation for DNA and proteins with various models and options, bootstrapping, and parallel computations. License: unknown Vendor: Institut Pasteur Package: gensoft-fastme-2.1.6.3 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 284 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-fastme-2.1.6.3_3.0_amd64.deb Size: 133982 MD5sum: e8bfb16fc62da3fd348ad8945c548084 SHA1: a3acaf4203a20d50adde24d7ebfb4fe8246db46f SHA256: 5b888c517bd65a455b18da67eaa4d6bf9d3fc9017f3fc0e1b9db68d97fb6d46a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: FastME provides distance algorithms to infer phylogenies. FastME is based on balanced minimum evolution, which is the very principle of NJ. FastME improves over NJ by performing topological moves using fast, sophisticated algorithms. The first version of FastME only included Nearest Neighbor Interchange (NNI). The new 2.0 version also includes Subtree Pruning and Regrafting (SPR), while remaining as fast as NJ and providing a number of facilities distance estimation for DNA and proteins with various models and options, bootstrapping, and parallel computations. License: unknown Vendor: Institut Pasteur Package: gensoft-fastme-2.1.6.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 284 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-fastme-2.1.6.4_2.0_amd64.deb Size: 134044 MD5sum: 61d2f35f8c2611cc0ea9a69827e16e17 SHA1: f612273f5fa0eafc6ff272cf0fce7f1da858ffb8 SHA256: af4c39c9878ba87ad37ea608ea32f1599d0e848af1cff375fe5ab3397bbc7d2d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: FastME provides distance algorithms to infer phylogenies. FastME is based on balanced minimum evolution, which is the very principle of NJ. FastME improves over NJ by performing topological moves using fast, sophisticated algorithms. The first version of FastME only included Nearest Neighbor Interchange (NNI). The new 2.0 version also includes Subtree Pruning and Regrafting (SPR), while remaining as fast as NJ and providing a number of facilities distance estimation for DNA and proteins with various models and options, bootstrapping, and parallel computations. License: unknown Vendor: Institut Pasteur Package: gensoft-fastml-3.11 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1328 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-fastml-3.11_1.0_amd64.deb Size: 539156 MD5sum: 5d7214665baa69fda3d5eb4cbf229f60 SHA1: e8ef87a9fc7b34a276128cf8b8b8293bd4f7e9e8 SHA256: 300d50c725a1f18ca6724ccaa2a81998f4b6eaec5c3611ecbd4e8db7a51690fa Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Maximum likelihood reconstruction of ancestral amino-acid sequences. A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites. License: unknown Vendor: Institut Pasteur Package: gensoft-fastp-0.20.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 23600 Depends: gensoft-gcc-9.2.0, libc6, zlib1g Filename: pool/main/gensoft-fastp-0.20.1_1.0_amd64.deb Size: 3933944 MD5sum: 1bea13f9232411e21bc872e8f64cbc83 SHA1: f960bb88ece868a5852ccbd4abab261dcf220b52 SHA256: 9ecffe1d693389b1dcc4020e12894d69c4d6514079f1e6b0d9222b8ee7539376 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) 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License: unknown Vendor: Institut Pasteur Package: gensoft-fastp-0.23.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 24272 Depends: gensoft-gcc-9.2.0, gensoft-libdeflate-1.8, zlib1g, gensoft-isa-l-2.31.0, libc6 Filename: pool/main/gensoft-fastp-0.23.4_1.0_amd64.deb Size: 4162062 MD5sum: 393d3dded1b448cbb25da435e7b4b32c SHA1: a0cc9a4057d05088efec94a0cecdad65da185158 SHA256: bc3f221fcbd086718c4fa2a6b928e7ab0d5eee62b8bd2bee05fc065b74e562f7 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) License: unknown Vendor: Institut Pasteur Package: gensoft-fastp-0.24.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 24271 Depends: gensoft-isa-l-2.31.0, zlib1g, gensoft-libdeflate-1.8, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-fastp-0.24.0_1.0_amd64.deb Size: 4162584 MD5sum: d4385c286860b1ebf3cfe12ae3fc7858 SHA1: a241d57357d67c0478181f6752b9089bab13ca63 SHA256: e472036fa6deb7d8567de84badbcfb0269c29454e987fe41fa74bfd48a888723 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) License: unknown Vendor: Institut Pasteur Package: gensoft-fastp-0.26.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 26012 Depends: gensoft-gcc-9.2.0, gensoft-isa-l-2.31.0, libc6, gensoft-libdeflate-1.8, zlib1g Filename: pool/main/gensoft-fastp-0.26.0_1.0_amd64.deb Size: 4318138 MD5sum: 93023f00feb2326ebf973beb12acb993 SHA1: 4b8bca2432cb841b16618dc28588017db347ce28 SHA256: 8f2f923168f6b7f9b61fd9832e1bf63ea70ff0992824212936e6bc703684e738 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) License: unknown Vendor: Institut Pasteur Package: gensoft-fastp-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 28848 Depends: gensoft-isa-l-2.31.0, libc6, zlib1g, gensoft-gcc-9.2.0, gensoft-libdeflate-1.8 Filename: pool/main/gensoft-fastp-1.0.1_1.0_amd64.deb Size: 4251948 MD5sum: d9f35e650bdb664c5ed1585d629e5d35 SHA1: 32639cf8bf59f40ae328f31e72060af1dc885292 SHA256: eacb5ec4d57982cd66497e9219d22a8d1dcb9a4845a943d2a212302b55614541 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) License: unknown Vendor: Institut Pasteur Package: gensoft-fastq-info-1.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 59 Depends: gensoft-pigz-2.4, gensoft-fqzcomp-4.6, gensoft-dsrc-2.0.2, gensoft-quip-1.1.8 Filename: pool/main/gensoft-fastq-info-1.0_2.0_amd64.deb Size: 14606 MD5sum: 3eedbd67797f46201ef7fb2b7ecfb514 SHA1: 5828123e7d64e7638474e7c45c2708852c13b4b5 SHA256: f55765f88b71854e55d15bc2d458c0d1cc0f9824d9a18b1e9a17ad42e8c161e7 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Estimating standard descriptive statistics from FASTQ files License: unknown Vendor: Institut Pasteur Package: gensoft-fastq-info-2.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 67 Depends: gensoft-dsrc-2.0.2, gensoft-fqzcomp-4.6, gensoft-quip-1.1.8, gensoft-pigz-2.4 Filename: pool/main/gensoft-fastq-info-2.0_2.0_amd64.deb Size: 15770 MD5sum: ddbbbc7c3b522544f0172d9387729f32 SHA1: 67551782f767db0722a746939b0aae4bdd3c830a SHA256: b586c6a5534e1ff49384e12a4d5573b1c99bc76aa5aeecbd9fdc1d7d123d6cdb Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Estimating standard descriptive statistics from FASTQ files License: unknown Vendor: Institut Pasteur Package: gensoft-fastq-info-3.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 74 Depends: gensoft-gawk-5.0.1, gensoft-pigz-2.4, gzip, gensoft-fqreport-1.0, gensoft-dsrc-2.0.2, gensoft-fqzcomp-4.6, bc, bash, gensoft-quip-1.1.8, bzip2 Filename: pool/main/gensoft-fastq-info-3.0_2.0_amd64.deb Size: 16928 MD5sum: d890ae4138f8cf0505ee1378c882ea5a SHA1: 8e8619d8208e0f63305bd9e1c07a676b8ac7106e SHA256: 4e7eee81282c7dde73c31a4519a511290816ebe237314b7b7c31c94874cb79a8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Estimating standard descriptive statistics from FASTQ files License: unknown Vendor: Institut Pasteur Package: gensoft-fastq-pair-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 28 Depends: libc6 Filename: pool/main/gensoft-fastq-pair-1.0_1.0_amd64.deb Size: 10296 MD5sum: 304a095d7144f7b7bff405df772af16e SHA1: 7a58fe2a437a3860ea9f8999de7b40dc0a6d2ce7 SHA256: ddf2389f0fc1abd026ba67d753541663d74461446bf17e73ed214c21b7188246 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Rewrite paired end fastq files to make sure that all reads have a mate and to separate out singletons. License: unknown Vendor: Institut Pasteur Package: gensoft-fastq-screen-v0.14.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1652 Depends: gensoft-expat-2.2.9, gensoft-libjpeg-turbo-2.0.4, gensoft-libtiff-4.1.0, gensoft-xorg-libs-1.1, gensoft-libgd-gd-2.2.5, gensoft-adm-perl-5.30.1, gensoft-bwa-0.7.17, gensoft-bismark-v0.22.3, gensoft-freetype-2.10.1, gensoft-bowtie-1.2.3, gensoft-fontconfig-2.13.91, gensoft-samtools-1.10, gensoft-xz-5.2.4, gensoft-bowtie2-2.3.5.1, gensoft-libpng-1.6.37 Filename: pool/main/gensoft-fastq-screen-v0.14.0_1.0_amd64.deb Size: 845110 MD5sum: 249453d2bbe814a1f120201cc0dfb760 SHA1: 2e7810472351377ebead75264d28cbb0e97049ac SHA256: ab62355ff0edeeedb5ff9a767df63ac78d723157dad14012afffdb73c1d16bbd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect. License: unknown Vendor: Institut Pasteur Package: gensoft-fastq-tools-0.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 569 Depends: libc6, gensoft-pcre-8.43 Filename: pool/main/gensoft-fastq-tools-0.8_1.0_amd64.deb Size: 195374 MD5sum: d051e9ee986d2a10de668f30beb2030b SHA1: b562cfc9c5dd41e75cfa6c894d2899bfa92f6c68 SHA256: e291af99425698060bfcc43478f7c53d09a8a466ac52f459583db7bbe03a6e4f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This package provides a number of small and efficient programs to perform common tasks with high throughput sequencing data in the FASTQ format. All of the programs work with typical FASTQ files as well as gzipped FASTQ files. License: unknown Vendor: Institut Pasteur Package: gensoft-fastq-tools-0.8.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 571 Depends: libc6, gensoft-pcre-8.43 Filename: pool/main/gensoft-fastq-tools-0.8.3_1.0_amd64.deb Size: 196030 MD5sum: 8aecd8430bf04e0dce19542fd0819959 SHA1: 1fa1f9d4b275e437db45f3125ae610fd6a697bbf SHA256: 4e97529df1953e58682dfcfa552ff5e7a5e52c2bf61b45b7dcd8faa63603a49e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: This package provides a number of small and efficient programs to perform common tasks with high throughput sequencing data in the FASTQ format. All of the programs work with typical FASTQ files as well as gzipped FASTQ files. License: unknown Vendor: Institut Pasteur Package: gensoft-fastqc-0.11.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 10983 Depends: gensoft-adm-perl-5.30.1, gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-fastqc-0.11.9_1.0_amd64.deb Size: 10100888 MD5sum: 53e319619d525dff8e7e6e9d4b095072 SHA1: e5adaa55111df5ba0c40d0a2a5f33256b8826c2e SHA256: d26fc8bb1d42c5302120f021fb8ceaafd50da2f79bfdcbbc5b234f0e6f5c142f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A quality control tool for high throughput sequence data. License: unknown Vendor: Institut Pasteur Package: gensoft-fastqc-0.12.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12647 Depends: gensoft-adm-perl-5.30.1, gensoft-graalvm-ce-java19-22.3.1 Filename: pool/main/gensoft-fastqc-0.12.1_1.0_amd64.deb Size: 11913314 MD5sum: 9557f89e676cc33fd0f6db26f76c73bf SHA1: f310410106fff4382fa45882536ee8254462631f SHA256: 9fb3e6205ac228d95aa39fb35f95f916588beab6cfb48c848637d3a3f10df66a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A quality control tool for high throughput sequence data. License: unknown Vendor: Institut Pasteur Package: gensoft-fastqsplitter-1.2.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12651 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-fastqsplitter-1.2.0_1.0_amd64.deb Size: 4008892 MD5sum: edae148f3cc26289f71236115886148b SHA1: 0092eab17db66b6a4c9d104fee76abe44d9b3551 SHA256: f20f6186da2ed8d4fbda160ceed4406d7871253d742851deba9e97d575ceb79d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: splits a fastq file over the specified output files evenly License: unknown Vendor: Institut Pasteur Package: gensoft-fastqsplitter-2.0.0-dev Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12423 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-fastqsplitter-2.0.0-dev_1.0_amd64.deb Size: 3930988 MD5sum: b3a6045b39d7a9d7bee3a0e0a2935cbb SHA1: 25911081a8ec27d8fefceb49f0ac410ade6acdfa SHA256: 61f1607a2ccdbad54980e921ffed2956a81e4c695ace61b49d90325a0a7e48f7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: splits a fastq file over the specified output files evenly License: unknown Vendor: Institut Pasteur Package: gensoft-fastqtk-0.27 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 161 Depends: libc6, zlib1g Filename: pool/main/gensoft-fastqtk-0.27_1.0_amd64.deb Size: 53894 MD5sum: 65eae6e0f2aac6e34e5ae86efcc82762 SHA1: 759ffbf78e0af917071da030eb8992a5ddd94651 SHA256: 4dc690cd80616e33dbf7144577a3a9a05926ba0f3668038794188e999e490149 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fastqtk is a fast and lightweight tool for interleaving/deinterleaving/counting/trimming FASTQ files License: unknown Vendor: Institut Pasteur Package: gensoft-fastqtosanger-20120405 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-fastqtosanger-20120405_1.0_amd64.deb Size: 4088 MD5sum: 02f224fb43f498e85b7c5cc05201463b SHA1: 5600f289a7e4f58c348c702c4c51828a2ae929bf SHA256: 8f8abb20963151ca3d3bea528ee994dfd3d3944a7d0a732083b31e71b36a5854 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FastqToSanger is a tool that detects the quality scoring system in FastQ formatted files, and can convert data to Sanger one if needed. License: unknown Vendor: Institut Pasteur Package: gensoft-fastqvalidator-0.1.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 186 Depends: zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-fastqvalidator-0.1.1_1.0_amd64.deb Size: 75274 MD5sum: 5930dfae3b63fb435e58e138429a2a66 SHA1: 481c64499685b729fc7a1b3149bbdc0c7068b411 SHA256: 54edb13f75d042c8c1f4fa6743f91bc81c13a0793be31d73d51213a4dbb36252 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FastQ Files validator License: unknown Vendor: Institut Pasteur Package: gensoft-fastsimcoal2-fsc2705 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 5893 Filename: pool/main/gensoft-fastsimcoal2-fsc2705_1.0_amd64.deb Size: 3469770 MD5sum: 9cd03ac8c7e76cc7b435260cdf34c24e SHA1: e5ddfef66b8eb9f5b3612d5dc5f25854c3abc2b6 SHA256: d0700cafe8bc30c6d541123a3e5acae084330bfa8f7131ce7d5aec549c965eac Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fast sequential Markov coalescent simulation of genomic data under complex evolutionary models License: unknown Vendor: Institut Pasteur Package: gensoft-faststructure-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 216012 Depends: libbz2-1.0, zlib1g, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17, libc6, gensoft-gsl-2.6 Filename: pool/main/gensoft-faststructure-1.0_1.0_amd64.deb Size: 69994364 MD5sum: 67b459326a5ea3b874cf01a3aa0b6299 SHA1: b6c6de9ed0600f623df865da6bc5201fedece953 SHA256: a110ff358e31766a90893ef754408fefa547e68a502f259134f7c9ba38f5a0c3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fastStructure is a fast algorithm for inferring population structure from large SNP genotype data. It is based on a variational Bayesian framework for posterior inference. License: unknown Vendor: Institut Pasteur Package: gensoft-fasttree-2.1.11 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 763 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-fasttree-2.1.11_2.0_amd64.deb Size: 407398 MD5sum: b058930ccf518568c9162776dc2b5630 SHA1: e2dfb54b51c4b36d696649fa3054deed62b30c25 SHA256: d310ca4c4fb68ef9e0da5f517d2f7ad799c1efe4d19e837ceed4db2fa5f2a589 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences License: unknown Vendor: Institut Pasteur Package: gensoft-fastuniq-1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 34 Depends: libc6 Filename: pool/main/gensoft-fastuniq-1.1_1.0_amd64.deb Size: 13036 MD5sum: c8e11255f34611dfdf77b6a1f0d8cc50 SHA1: bd07e33c267864e77014b2048845d1f7194d78ae SHA256: 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files preprocessing License: unknown Vendor: Institut Pasteur Package: gensoft-fatools-0.99 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 104 Depends: libc6, gensoft-adm-perl-5.30.1, libssl1.1 Filename: pool/main/gensoft-fatools-0.99_1.0_amd64.deb Size: 38112 MD5sum: 5c451a16164fa3b43afeb3b8a4953fab SHA1: e0f94fb78963d39eb61be6d080b261604d15253d SHA256: f45ac73ea290cc5190ed9100abe741723056967e1764813cbdb8c44d604c9b52 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FASTA sequences files utilities License: unknown Vendor: Institut Pasteur Package: gensoft-fermi-lite-0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2275 Depends: libc6, zlib1g Filename: pool/main/gensoft-fermi-lite-0.1_1.0_amd64.deb Size: 801638 MD5sum: abd22b7cc3d0df7c393edfbb20475752 SHA1: 062616cd3f39f151832fc7f1d514acd6481edfc4 SHA256: 6ffc715f8682eca4e0239eead1f965339a561713f1f8d17b149d9b5392bf9bf7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Standalone C library for assembling Illumina short reads in small regions License: unknown Vendor: Institut Pasteur Package: gensoft-fftw-2.1.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1509 Filename: pool/main/gensoft-fftw-2.1.5_1.0_amd64.deb Size: 550318 MD5sum: 499260c1dfa55bf909d76b5a8639ea51 SHA1: 06835648d6614758f4d3b3c134a87d517cfc33d1 SHA256: 54d006ad877507a2bed7c851509b4f791725abedcfc04ca5275916a9f0b57b58 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions License: unknown Vendor: Institut Pasteur Package: gensoft-fftw-3.3.10 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 17642 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-fftw-3.3.10_1.0_amd64.deb Size: 5643266 MD5sum: c95f69fd74b4c781f4e062ee584f39d3 SHA1: f100bba901066678e7ee0dfda2e3f54a8fba09cb SHA256: 6fcf3f253155f5bf1a035b2672b9cc23d7a07769104b5b3bf91643b52dda1519 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions License: unknown Vendor: Institut Pasteur Package: gensoft-fftw-3.3.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 17657 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-fftw-3.3.8_1.0_amd64.deb Size: 5663904 MD5sum: 5e012909f8cbc316ff900d3674e14131 SHA1: 26d0e0a904c7f817a9d7a14bc37a1b3103306e2c SHA256: c11c4801615dc31314904c369fc186d8e99b699c8f27c9b6cbb7e1d9b742a938 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions License: unknown Vendor: Institut Pasteur Package: gensoft-fgbio-1.5.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 38510 Depends: gensoft-graalvm-ce-java11-20.0.0 Filename: pool/main/gensoft-fgbio-1.5.1_1.0_amd64.deb Size: 36901920 MD5sum: 4c45f77ba79bfdf4eb982b926de960aa SHA1: 7eb5bc63226937b724711222935c5a90ac8ea317 SHA256: 1e6ab6248e049f53c5dadda748f43a97101e0570a8f1bf6dec93d0ddbeb3f973 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: command line toolkit for working with genomic and particularly next generation sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-figtree-1.4.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3530 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-figtree-1.4.4_1.0_amd64.deb Size: 3250800 MD5sum: d0755f0c44548cb7da1e26f525af3b78 SHA1: 4f84554d2efb0e933b1fadf8326ae5de22047f86 SHA256: 9b0a9ca2543142b366b5dcd8646a1f6996aee4903149ef96f49809e504d50afb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures. License: unknown Vendor: Institut Pasteur Package: gensoft-filtlong-0.2.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 223 Depends: gensoft-gcc-9.2.0, libc6, zlib1g Filename: pool/main/gensoft-filtlong-0.2.0_2.0_amd64.deb Size: 86300 MD5sum: 54419729e84b6c9398b1bca30b69fb6f SHA1: 6fc0e4cdf4c0a7f30a93c749ae88953d8242bc94 SHA256: 590614e2f69238e3f1715d58600ecd2f126f4d178cb9c535fdc840f099aae358 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter. License: unknown Vendor: Institut Pasteur Package: gensoft-filtlong-0.2.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 223 Depends: gensoft-gcc-9.2.0, libc6, zlib1g Filename: pool/main/gensoft-filtlong-0.2.1_1.0_amd64.deb Size: 86422 MD5sum: fdbb028750790e3ca8eab83f13204678 SHA1: be8bdd2546f2a5719a7ae7d8e07f259bf17456ee SHA256: 7df800f68d4242a7da7177f2d3ee58ff8ebd2bc773a1f1994744d636657d173b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter. License: unknown Vendor: Institut Pasteur Package: gensoft-finddqe-150706 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 37175 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-finddqe-150706_1.0_amd64.deb Size: 14418496 MD5sum: 4ed5d1d36ae39fd29aaf832492708626 SHA1: ee6ab556b648ef3df052e98b083af7e90b52577f SHA256: 160bbbcd6953ed7d51025cb8d478bf690dcf750ca15f1791917e198658a6490a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FindDQE determines the detective quantum efficiency (DQE) of a detector License: unknown Vendor: Institut Pasteur Package: gensoft-finestructure-4.1.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 19792 Depends: libgomp1, libc6, libgcc-s1, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-finestructure-4.1.1_1.0_amd64.deb Size: 6349718 MD5sum: bd93370ac0dd187d8ee1438cb7ef63e8 SHA1: cb2e6e5a97095d9465b2203bcd913c7ad555b493 SHA256: 7fa6f9331282a5fa712f453d01bb408ee0dea8282c02ede254090f1d4bb5f5b0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a fast and powerful algorithm for identifying population structure using dense sequencing data. By using the output of ChromoPainter as a (nearly) sufficient summary statistic, it is able to perform model-based Bayesian clustering on large datasets, including full resequencing data, and can handle up to 1000s of individuals. Full assignment uncertainty is given. License: unknown Vendor: Institut Pasteur Package: gensoft-fivepseq-1.0b5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 522499 Depends: gensoft-adm-python-3.8.1, gensoft-phantomjs-2.1.1 Filename: pool/main/gensoft-fivepseq-1.0b5_1.0_amd64.deb Size: 154615190 MD5sum: e7ec1cebcc0383feb74f6f62a844e503 SHA1: 79d65bde6e4b2c9593af116738da824b18275bd9 SHA256: ee7f4e171afbfe4d035e023ad78f824c12b2505f66650f0ca8f759d35319f0ee Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Fivepseq is a software package for analysis of 5prime endpoints distribution in RNA sequencing datasets. This is particularly useful for techniques that capture 5prime monophosphorylated RNAs, such as 5PSeq, PARE-seq or GMUC. It may also be useful for ribosome profiling datasets and alike. License: unknown Vendor: Institut Pasteur Package: gensoft-flash-1.2.11 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 105 Depends: zlib1g, libc6 Filename: pool/main/gensoft-flash-1.2.11_2.0_amd64.deb Size: 36400 MD5sum: 63ff0a32ab60ea77276e98847a548550 SHA1: de46bc5dc3b18cf78d9666c2895cf8b8d07888e5 SHA256: a4c3f29538eabf879f14c5e5e0223ae548944183c8b6eddace1fc8a5e55ded30 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: FLASH (Fast Length Adjustment of SHort reads) is a very fast and accurate software tool to merge paired-end reads from next-generation sequencing experiments. FLASH is designed to merge pairs of reads when the original DNA fragments are shorter than twice the length of reads. The resulting longer reads can significantly improve genome assemblies. They can also improve transcriptome assembly when FLASH is used to merge RNA-seq data. License: unknown Vendor: Institut Pasteur Package: gensoft-flatbuffers-23.3.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 11843 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-flatbuffers-23.3.3_1.0_amd64.deb Size: 2424902 MD5sum: e812b10cbf76dbe0e62d661e1b67178b SHA1: 0f7b3d74f1152e8e9a400cc65c02742ed4135543 SHA256: d3ef1f44b6f92444e3c27d68e290b3dba70b74d27ded2bdbc8c87d3283d35425 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FlatBuffers is a cross platform serialization library architected for maximum memory efficiency License: unknown Vendor: Institut Pasteur Package: gensoft-flex-2.6.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2487 Depends: libc6, gensoft-m4-1.4.18 Filename: pool/main/gensoft-flex-2.6.4_1.0_amd64.deb Size: 518394 MD5sum: be7ae7724cc1573e9179528e0d5502e9 SHA1: 36867eafeac9ae2b3986024babdffd5d64795747 SHA256: 0a9f05f24d1aa5685eac830ac6f16af14a3bf978ed2845eeb80e3d2b14664c4e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: flex, the fast lexical analyzer generator, is a tool for generating scanners - programs which recognize lexical patterns in text. License: unknown Vendor: Institut Pasteur Package: gensoft-flexbar-3.5.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1416 Depends: zlib1g, libc6, gensoft-gcc-9.2.0, libbz2-1.0, gensoft-tbb-2020.1 Filename: pool/main/gensoft-flexbar-3.5.0_1.0_amd64.deb Size: 472780 MD5sum: e4b4cad2742add774d135fe9a36709f3 SHA1: 071eff1e20d081388961fdb0ee7cd544847fbe0c SHA256: b432656c2d714fb428b7ebc42d0dfa21175501f47b2fd8dcb8abe226aa9246ce Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: flexible barcode and adapter removal for sequencing platforms License: unknown Vendor: Institut Pasteur Package: gensoft-fltk-1.3.5 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6993 Depends: gensoft-fontconfig-2.13.91, gensoft-mesa-19.0.8, gensoft-libjpeg-turbo-2.0.4, gensoft-gcc-9.2.0, gensoft-xorg-libs-1.1, libbz2-1.0, gensoft-glu-9.0.1, gensoft-freetype-2.10.1, gensoft-expat-2.4.1, gensoft-libdrm-2.4.100, zlib1g, libc6, gensoft-libpng-1.6.37 Filename: pool/main/gensoft-fltk-1.3.5_2.0_amd64.deb Size: 2159080 MD5sum: 387dfa3ce1ad745ce4bec95b989394f0 SHA1: 9777bb24580e954861791ecb89fea2f3e33f23f2 SHA256: bdf22b69b20203793ada38fae59f83b70092c7d6ee5122f0881564c68d76e63c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: FLTK is a cross-platform C++ GUI toolkit. 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License: unknown Vendor: Institut Pasteur Package: gensoft-fq2dna-24.02 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 126 Depends: gensoft-flash-1.2.11, gensoft-fasta2agp-2.0, gensoft-bwa-mem2-2.2.1, gensoft-fqtools-1.2, sed, gensoft-alienremover-1.0, gensoft-prokka-1.14.5, gensoft-contig-info-v2.01, bc, gensoft-musket-1.1, gensoft-rock-2.0.0, gensoft-diamond-2.0.6, gensoft-minced-0.4.2, gensoft-ncbitools-20170106, gensoft-aliendiscover-0.1, gensoft-sam2msa-0.4.3.1, gensoft-spades-3.15.5, gensoft-ntcard-1.2.2, gensoft-bzip2-1.0.6, gensoft-dsrc-2.0.2, gensoft-graalvm-ce-java11-20.0.0, gensoft-prodigal-2.6.3.pp1, gensoft-samtools-1.18, gensoft-alientrimmer-2.1, gensoft-signalp-6.0, gensoft-fqcleaner-23.12, gensoft-gnuplot-5.2.8, gensoft-aragorn-1.2.38, gensoft-bedtools-2.29.2, gensoft-barrnap-0.9, gensoft-platon-1.6, gensoft-infernal-1.1.5, gensoft-blast+-2.14.1, gensoft-mummer-4.0.0rc1, gensoft-gawk-5.0.1, bash, gensoft-hmmer-3.4 Filename: pool/main/gensoft-fq2dna-24.02_1.0_amd64.deb Size: 31274 MD5sum: a3dd23b6f0f078e87968fd2ee41bc7f1 SHA1: 0eb6a301f366af535fd7b1012053f4c20fef05f7 SHA256: bfcd649b93530b9a887c9548f29d0fdc14c31a1df7eac2aeee5800b1d5513059 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: fq2dna (FASTQ files to de novo assembly) is a command line tool written in Bash to ease the de novo assembly of archaea, bacteria or virus genomes from raw high-throughput sequencing (HTS) paired-end (PE) reads. License: unknown Vendor: Institut Pasteur Package: gensoft-fq2dna-25.03 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 134 Depends: gensoft-blast+-2.16.0, gensoft-sam2msa-0.4.3.1, gensoft-fqtools-1.2, gensoft-minced-0.4.2, gensoft-dsrc-2.0.2, gensoft-gawk-5.0.1, gensoft-ncbitools-20170106, gensoft-rock-2.1.0, gensoft-aliendiscover-0.1, gensoft-prokka-1.14.5, gensoft-hmmer-3.4, gensoft-graalvm-ce-java11-20.0.0, gensoft-spades-4.0.0, gensoft-flash-1.2.11, bc, gensoft-fqcleaner-25.03, gensoft-diamond-2.0.6, gensoft-mummer-4.0.0rc1, sed, gensoft-aragorn-1.2.41, gensoft-bedtools-2.29.2, gensoft-infernal-1.1.5, gensoft-musket-1.1, gensoft-bwa-mem2-2.2.1, gensoft-ntcard-1.2.2, gensoft-bzip2-1.0.6, gensoft-fasta2agp-2.0, gensoft-prodigal-2.6.3.pp1, gensoft-barrnap-0.9, gensoft-samtools-1.21, gensoft-signalp-6.0, gensoft-alientrimmer-2.1, bash, gensoft-contig-info-v2.01, gensoft-platon-1.6, gensoft-alienremover-1.0, gensoft-gnuplot-5.2.8 Filename: pool/main/gensoft-fq2dna-25.03_1.0_amd64.deb Size: 34120 MD5sum: 8dc25ab13259aa04e67110753b588b5a SHA1: 23a16893109e027478075ebd9323e62241635cc7 SHA256: 201ffd34aa2ed32689e097974fc54101395b37c2a21fdbbc7631ac799d3bae9b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: fq2dna (FASTQ files to de novo assembly) is a command line tool written in Bash to ease the de novo assembly of archaea, bacteria or virus genomes from raw high-throughput sequencing (HTS) paired-end (PE) reads. License: unknown Vendor: Institut Pasteur Package: gensoft-fqcleaner-21.06 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 269 Depends: gensoft-java-13.0.2, gensoft-musket-1.1, gensoft-ntcard-1.2.2, gensoft-reaper-15-065, bash, bc, gensoft-fqtools-1.2, gensoft-alientrimmer-2.0, gensoft-flash-1.2.11, gensoft-bzip2-1.0.6, gensoft-gawk-5.0.1, gensoft-dsrc-2.0.2, gensoft-rock-1.9.3, gensoft-alienremover-1.0 Filename: pool/main/gensoft-fqcleaner-21.06_1.0_amd64.deb Size: 41648 MD5sum: c6098544ea68c8242af50665e9966f1e SHA1: b708c8755e3ee50b8540f418f491f1b69f2cf62c SHA256: 87c9224bda37e989e1dabe9b9c4a70b095d85668d462d30efb499a0ae4f26309 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fqCleanER (fastq Cleaning and Enhancing Routine) is a command line tool written in Bash to ease the different standard preprocessing steps of short high-throughput sequencing (HTS) reads. License: unknown Vendor: Institut Pasteur Package: gensoft-fqcleaner-21.10 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 270 Depends: gensoft-bzip2-1.0.6, gensoft-reaper-15-065, gensoft-alientrimmer-2.0, gensoft-alienremover-1.0, gensoft-java-13.0.2, gensoft-rock-1.9.5, gensoft-fqtools-1.2, bash, gensoft-musket-1.1, gensoft-gawk-5.0.1, gensoft-dsrc-2.0.2, bc, gensoft-ntcard-1.2.2, gensoft-flash-1.2.11 Filename: pool/main/gensoft-fqcleaner-21.10_1.0_amd64.deb Size: 41124 MD5sum: 02aad8e720fb32e3ed9b6915c7ebdccb SHA1: 72aeef967e257bbbc85568f03bb46a2d0b9a745a SHA256: 894c99988f08659f2524fd5b0bec896ea31c37dcb80034e29e77a23e5dd2061b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fqCleanER (fastq Cleaning and Enhancing Routine) is a command line tool written in Bash to ease the different standard preprocessing steps of short high-throughput sequencing (HTS) reads. License: unknown Vendor: Institut Pasteur Package: gensoft-fqcleaner-23.07 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 279 Depends: gensoft-rock-2.0.0, gensoft-fqtools-1.2, gensoft-gawk-5.0.1, gensoft-alienremover-1.0, gensoft-musket-1.1, gensoft-dsrc-2.0.2, gensoft-ntcard-1.2.2, gensoft-flash-1.2.11, gensoft-aliendiscover-0.1, bash, bc, gensoft-bzip2-1.0.6, gensoft-alientrimmer-2.0 Filename: pool/main/gensoft-fqcleaner-23.07_1.0_amd64.deb Size: 42824 MD5sum: ba5d117ac71dcb16ed9738b627e20edd SHA1: db4062063e58d55fde9f9109e98aae9001f923ee SHA256: 41ec09b0d2c14e7c9025adca301471cd38c25316389f10ef1270dee3dfbd4da0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fqCleanER (fastq Cleaning and Enhancing Routine) is a command line tool written in Bash to ease the different standard preprocessing steps of short high-throughput sequencing (HTS) reads. License: unknown Vendor: Institut Pasteur Package: gensoft-fqcleaner-23.12 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 281 Depends: gensoft-flash-1.2.11, gensoft-fqtools-1.2, gensoft-ntcard-1.2.2, bash, gensoft-bzip2-1.0.6, gensoft-gawk-5.0.1, gensoft-alienremover-1.0, gensoft-dsrc-2.0.2, gensoft-rock-2.0.0, gensoft-musket-1.1, bc, gensoft-alientrimmer-2.1, gensoft-aliendiscover-0.1 Filename: pool/main/gensoft-fqcleaner-23.12_1.0_amd64.deb Size: 43056 MD5sum: c12a2bfe00e87f18ac693223e1a3641d SHA1: a83b6c3ad7c4841a49308866a910f72679d716ce SHA256: 15719cd3b2f6dfd3f951f35695aabbbbb7a0af12eeaa02bac782fc686d833303 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fqCleanER (fastq Cleaning and Enhancing Routine) is a command line tool written in Bash to ease the different standard preprocessing steps of short high-throughput sequencing (HTS) reads. License: unknown Vendor: Institut Pasteur Package: gensoft-fqcleaner-25.03 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 300 Depends: bash, gensoft-flash-1.2.11, gensoft-rock-2.1.0, gensoft-dsrc-2.0.2, gensoft-alienremover-1.0, gensoft-fqtools-1.2, bc, gensoft-bzip2-1.0.6, gensoft-alientrimmer-2.1, gensoft-ntcard-1.2.2, gensoft-gawk-5.0.1, gensoft-musket-1.1, gensoft-aliendiscover-0.1 Filename: pool/main/gensoft-fqcleaner-25.03_1.0_amd64.deb Size: 47942 MD5sum: ede1a492ee131eaaf6679260af3b3200 SHA1: e1e6002835027ca5dfa0ea51e38bb29b296d0f77 SHA256: 2a8f8e9095e20901639e6134236fd5701beffd9027e00663e4b39030f144d427 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: fqCleanER (fastq Cleaning and Enhancing Routine) is a command line tool written in Bash to ease the different standard preprocessing steps of short high-throughput sequencing (HTS) reads. License: unknown Vendor: Institut Pasteur Package: gensoft-fqgrep-0.4.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 44 Depends: gensoft-tre-0.8.0, libc6, zlib1g Filename: pool/main/gensoft-fqgrep-0.4.4_1.0_amd64.deb Size: 19316 MD5sum: 7cdbaf1783d222f91324982e60dd94a8 SHA1: 19a7e43b4a14e9c234c919cbdf44b06279de87bf SHA256: a42fc4dcd489c6d60e49f48012b684fac9c149b3a0fd27e4de40d1f52b1cc1b6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an approximate sequence pattern matcher for FASTQ/FASTA files. One can think of it as being a grep and agrep like tool optimized for FASTQ and FASTA files. It can work directly on both compressed and uncompressed file types. License: unknown Vendor: Institut Pasteur Package: gensoft-fqreport-1.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 117 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-fqreport-1.0_2.0_amd64.deb Size: 37104 MD5sum: f3757f2c8d70a9de8524d5791fe5abbd SHA1: ee3ed04a0f3fe3e83a842215da09b7e02cff952f SHA256: e460cbde4d8fc5f72a24649d60e798c40a5a08e4e201fc20de06aa562edd4cdf Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: estimating several standard descriptive statistics from FASTQ-formatted High-Throughput Sequencing (HTS) read files License: unknown Vendor: Institut Pasteur Package: gensoft-fqreport-1.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 121 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-fqreport-1.1_2.0_amd64.deb Size: 38268 MD5sum: 9a02c4fe1c6fbfa2edc278812dc92dd4 SHA1: 1e95dc5e9c1b52b03378d29507da6cbda32e78ab SHA256: 96e013be899376045f79d8ee50748e9b0d13ddb4d230aacfffe53b9ece0c9d4b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: estimating several standard descriptive statistics from FASTQ-formatted High-Throughput Sequencing (HTS) read files License: unknown Vendor: Institut Pasteur Package: gensoft-fqsum-0.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12 Depends: gensoft-graalvm-ce-java23-23.0.1 Filename: pool/main/gensoft-fqsum-0.4_1.0_amd64.deb Size: 13208 MD5sum: 3cd6c7185de49e91b0a21cb56c3c94c7 SHA1: ba5a87f2c1edc3800d0dc834722942e4f00ed6bc SHA256: d84c633dbd7122d3bee6e3df875cd7a3a3963f433a34b7372893e481ca7b5d5c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: FQsum (FASTQ summary) is a lightweight utility tool written in Java for estimating different descriptive statistics from FASTQ-formatted High-Throughput Sequencing (HTS) read files License: unknown Vendor: Institut Pasteur Package: gensoft-fqsum-0.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12 Depends: gensoft-graalvm-ce-java23-23.0.1 Filename: pool/main/gensoft-fqsum-0.5_1.0_amd64.deb Size: 13278 MD5sum: f12758bd62a5074f5a6f3ff3c22ab7ab SHA1: c3ff8302eafb78a8129481b569be414812a4e11e SHA256: 1d87a32de9ee9deec35bd54077a5329f57ed6d9ad7e04b8d5df89cd429be6ed9 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: FQsum (FASTQ summary) is a lightweight utility tool written in Java for estimating different descriptive statistics from FASTQ-formatted High-Throughput Sequencing (HTS) read files License: unknown Vendor: Institut Pasteur Package: gensoft-fqtools-1.1a Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 290 Depends: gensoft-adm-perl-5.30.1, libssl1.1, libc6 Filename: pool/main/gensoft-fqtools-1.1a_1.0_amd64.deb Size: 97168 MD5sum: 7dff9235fec8749fbd45ec6ad3826983 SHA1: 851a0d93956547c8c51c255c90697bc32a6701b3 SHA256: 799c742909b042956882ab6c878ef5b3be8e51e04665d572500f2c475615c8e7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FASTQ sequences files utilities License: unknown Vendor: Institut Pasteur Package: gensoft-fqtools-1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 290 Depends: libssl1.1, gensoft-adm-perl-5.30.1, libc6 Filename: pool/main/gensoft-fqtools-1.2_1.0_amd64.deb Size: 97434 MD5sum: c73f7bf7dded7bcd616c006541245b2d SHA1: 456493cab816efde076a3bac1481ac23e0034a39 SHA256: eac3c2e3d6d20997672e09c5a0844045a3f5a859154d2828e2f77b21121bca87 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FASTQ sequences files utilities License: unknown Vendor: Institut Pasteur Package: gensoft-fqzcomp-4.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 389 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-fqzcomp-4.6_1.0_amd64.deb Size: 132184 MD5sum: 3836e6af2b489d3dc700da6c32e7d90c SHA1: c8b4534eb9a86035b943f6fdd531585ba2844fd4 SHA256: 891d5ac28583240379b52c2f97276720e81dabb43bfe0ff22f8a2c495d353be1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Fastq compression tool License: unknown Vendor: Institut Pasteur Package: gensoft-fraggenescan-1.30 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6523 Depends: libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-fraggenescan-1.30_2.0_amd64.deb Size: 1693664 MD5sum: e47d4cb73f5d1dbaac10406ca46f43ff SHA1: 9a0ccb569648fcfc5845b7b517a62d18a0f1ddec SHA256: 0132855a0bceaf4772313efaa93732b163328fdbc6bf73db6d712cce571f2773 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: an application for finding (fragmented) genes in short reads. License: unknown Vendor: Institut Pasteur Package: gensoft-fraggenescan-1.31 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6523 Depends: libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-fraggenescan-1.31_2.0_amd64.deb Size: 1693752 MD5sum: 0f057b153e77d67aa399148ac2f6591b SHA1: e5e8d918d3b358f43175b9d0f1516aeb9539f850 SHA256: c218648197e6181c1c49b598ce6c296f03626207fba2c52b6925512e81faaf1b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: an application for finding (fragmented) genes in short reads. License: unknown Vendor: Institut Pasteur Package: gensoft-frealign-v9.11 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 187188 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-frealign-v9.11_1.0_amd64.deb Size: 72291106 MD5sum: 989504bf605339fd17df0462a89cc7fd SHA1: 8c147e760877155b781e8d4e86d1030abab0089b SHA256: aa65cfaa177c03c3bc9aad25ada54af14a2d9a8b38617d1c88fbc2506de2b83d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program for high-resolution refinement of 3D reconstructions from cryo-EM images of single particles. License: unknown Vendor: Institut Pasteur Package: gensoft-freebayes-v1.3.10 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 262394 Depends: gensoft-htslib-1.10, zlib1g, gensoft-adm-perl-5.30.1, gensoft-adm-python-3.10.7, libbz2-1.0, libc6, libssl1.1, gensoft-curl-7.68.0, gensoft-xz-5.2.5, libgcc-s1, libstdc++6, gensoft-parallel-20200222, gensoft-samtools-1.21, gensoft-tabixpp-1.1.0, gensoft-vcflib-1.0.1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-freebayes-v1.3.10_1.0_amd64.deb Size: 80260514 MD5sum: 1f57edba17319a660f72258b7bf6c9b8 SHA1: a0dc34d8760ca5b271eff2519ea2da0da1c53275 SHA256: c89becbed43c9abdb5395bed52c18c88f79cbb624d783c136c5645fe6c7b33b8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment. License: unknown Vendor: Institut Pasteur Package: gensoft-freebayes-v1.3.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 66824 Depends: gensoft-curl-7.68.0, gensoft-jsoncpp-1.9.2, gensoft-gcc-9.2.0, gensoft-htslib-1.10, zlib1g, libssl1.1, libbz2-1.0, gensoft-tabixpp-1.1.0, libc6, gensoft-xz-5.2.5, gensoft-libbam-2.5.1 Filename: pool/main/gensoft-freebayes-v1.3.2_2.0_amd64.deb Size: 17672940 MD5sum: 454114b85189afc0e13a829689477977 SHA1: 3aa3006b9739b9bbfe31779f600f820284b3f92a SHA256: 57f3aef2db7f56b138004c11032ad3926b0dacefe6bc22f72f1679c8a9a1180b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment. License: unknown Vendor: Institut Pasteur Package: gensoft-freebayes-v1.3.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 66218 Depends: zlib1g, gensoft-gcc-9.2.0, libssl1.1, gensoft-xz-5.2.5, gensoft-curl-7.68.0, gensoft-htslib-1.10, libbz2-1.0, libc6 Filename: pool/main/gensoft-freebayes-v1.3.3_2.0_amd64.deb Size: 17623854 MD5sum: 5cc1bee8bfebf34e04e691b6f709cfd1 SHA1: 04a973970fbec71e91b6810824cc555595d1b024 SHA256: 21a03caaeac89e394e1aa0db2ea698bc56a8c5ccd9331707e2e70156a48caa4a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment. License: unknown Vendor: Institut Pasteur Package: gensoft-freebayes-v1.3.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 40023 Depends: libssl1.1, gensoft-xz-5.2.5, gensoft-curl-7.68.0, gensoft-gcc-9.2.0, zlib1g, gensoft-tabixpp-1.1.0, libc6, gensoft-htslib-1.10, libbz2-1.0 Filename: pool/main/gensoft-freebayes-v1.3.6_1.0_amd64.deb Size: 11024314 MD5sum: 5e6b54e4d59ddebf2d50d6adcda9ba30 SHA1: 1443c7fda1498344b71d61b89ccf2cf047043a82 SHA256: 8b9eb50e1fee90cf3567d999518503b23e3d610c043a78f3d656313d26c1f022 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment. License: unknown Vendor: Institut Pasteur Package: gensoft-freebayes-v1.3.8 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 57319 Depends: gensoft-xz-5.2.5, gensoft-tabixpp-1.1.0, gensoft-htslib-1.10, zlib1g, libc6, libbz2-1.0, libssl1.1, gensoft-gcc-9.2.0, gensoft-curl-7.68.0 Filename: pool/main/gensoft-freebayes-v1.3.8_1.0_amd64.deb Size: 15455314 MD5sum: 37e48c6813c9a62d72e87dbb78cae851 SHA1: aa55faaaaa27cc22bd82031dfbe5747cbe961f29 SHA256: b3fa8a03e98d735d0e52644ceebd30103f6482f9670c4ad28e95145d2eaa13a2 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment. License: unknown Vendor: Institut Pasteur Package: gensoft-freec-11.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 18352 Depends: gensoft-gcc-9.2.0, gensoft-r-3.6.2, gensoft-adm-perl-5.30.1, libc6 Filename: pool/main/gensoft-freec-11.5_1.0_amd64.deb Size: 4169556 MD5sum: 1d61b735465e7bc5460809c4489ea9c1 SHA1: e9599c24efc7e9bf109ba8e5062d72fd11f98f16 SHA256: 13828b3b4f734c6b502cd398592542f910fd5684590193328174c463210df8e5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool for detection of copy-number changes and allelic imbalances (including LOH) using deep-sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-freeglut-3.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1309 Depends: zlib1g, gensoft-expat-2.2.9, libc6, gensoft-xorg-libs-1.1, gensoft-libdrm-2.4.100, gensoft-mesa-19.0.8 Filename: pool/main/gensoft-freeglut-3.2.1_1.0_amd64.deb Size: 306806 MD5sum: f46b96918796cb49347c005358782995 SHA1: 7b6ef691c502ace66363987e749d2acacc9c71a1 SHA256: f18821b82f7eb8329f6ed86c8c7b01b68538fc245f305131db6dbb640628f2f8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: freeglut is a free-software/open-source alternative to the OpenGL Utility Toolkit (GLUT) library License: unknown Vendor: Institut Pasteur Package: gensoft-freesurfer-7.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5216844 Depends: gensoft-singularity-3.7.3 Filename: pool/main/gensoft-freesurfer-7.1.1_1.0_amd64.deb Size: 5296823972 MD5sum: 5676c668131301dc8504620a19542c93 SHA1: 2ca2db9a088ed2bdc88b98b8477cde3ebe7d9f26 SHA256: 5590f0f5921605fe09f72b5a851c59b3f3097d8993b0187d87420bc09e6a207f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: An open source software suite for processing and analyzing (human) brain MRI images License: unknown Vendor: Institut Pasteur Package: gensoft-freetype-2.10.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 11885 Depends: zlib1g, libc6, gensoft-libpng-1.6.37, libbz2-1.0 Filename: pool/main/gensoft-freetype-2.10.1_1.0_amd64.deb Size: 3808056 MD5sum: f06f4a0f849a39dfddd40385c2ee80a0 SHA1: c99aa85babf43e09f095d423c376e3225ec939f2 SHA256: 76606dd9a36431c6ce91bab99e75641f893ccc677f588c22be0e0bc3813b52b5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Accessibility Toolkit provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. License: unknown Vendor: Institut Pasteur Package: gensoft-fribidi-1.0.12 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 365 Depends: libc6 Filename: pool/main/gensoft-fribidi-1.0.12_1.0_amd64.deb Size: 96960 MD5sum: d6933de4093c5ca64af95444fbc3d0a7 SHA1: 405bb1e9861c2122bec2d1d7147f407983404b8b SHA256: 3a45636cc265ad7d9d23e6ceeff747a0a98180d8aaeccb795233c43d5aad60b1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Free Implementation of the Unicode Bidirectional Algorithm License: unknown Vendor: Institut Pasteur Package: gensoft-frogs-3.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 744707 Depends: gensoft-blast+-2.10.0, gensoft-mafft-7.453, zlib1g, gensoft-libiconv-1.16, gensoft-cutadapt-2.10, gensoft-osi-0.108.6, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0, gensoft-hmmer-3.3, gensoft-symphony-5.6.17, gensoft-r-3.6.2, gensoft-fasttree-2.1.11, gensoft-pandoc-2.9.2.1, gensoft-itsx-1.1.2, gensoft-rdp-classifier-2.12, gensoft-gmp-6.2.0, gensoft-flash-1.2.11, gensoft-clp-1.17.6, libc6, gensoft-swarm-3.0.0, gensoft-glpk-4.65, gensoft-coinutils-2.11.4, gensoft-cgl-0.60.3, gensoft-curl-7.68.0, gensoft-dylp-1.10.4, gensoft-atlas-3.10.2, gensoft-emboss-6.6.0, gensoft-vol-1.5.4, gensoft-libpng-1.6.37, gensoft-adm-python-2.7.17, gensoft-lapack-3.9.0, gensoft-xz-5.2.4, gensoft-vsearch-2.14.2, gensoft-libxml2-2.9.10 Filename: pool/main/gensoft-frogs-3.1.0_1.0_amd64.deb Size: 290897680 MD5sum: 77f4fc10c46260bb9009f641ea57fe22 SHA1: 8184c2a129650aec3107a67c21c67b2d4fdae71c SHA256: fab562f11f27a64878b75ea93481682472913f39c50482ef4c352f4619b2dc61 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data License: unknown Vendor: Institut Pasteur Package: gensoft-fsa-1.15.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 94197 Depends: gensoft-exonerate-2.4.0, gensoft-libjpeg-turbo-2.0.4, libc6, gensoft-xorg-libs-1.1, gensoft-adm-perl-5.30.1, gensoft-libgd-gd-2.2.5, gensoft-expat-2.2.9, gensoft-fontconfig-2.13.91, gensoft-freetype-2.10.1, gensoft-mummer-3.23, gensoft-libpng-1.6.37, zlib1g, libbz2-1.0, gensoft-xz-5.2.4, gensoft-gcc-9.2.0, gensoft-libtiff-4.1.0 Filename: pool/main/gensoft-fsa-1.15.9_1.0_amd64.deb Size: 28731666 MD5sum: 2f0e24707d59209c05163b9041528420 SHA1: f5b118be7ff319e8357dc95ca847044c7e6229ab SHA256: dc7d81f82357b03f3c15a1c77a58ec391f640380440e924fb43e573a7aa99f56 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FSA is a probabilistic multiple sequence alignment algorithm which uses a distance-based approach to aligning homologous protein, RNA or DNA sequences. 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License: unknown Vendor: Institut Pasteur Package: gensoft-ftgl-2.1.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1900 Depends: gensoft-xorg-libs-1.1, gensoft-libpng-1.6.37, gensoft-freetype-2.10.1, gensoft-mesa-19.0.8, gensoft-gcc-9.2.0, gensoft-glu-9.0.1, gensoft-expat-2.4.1, gensoft-libdrm-2.4.100 Filename: pool/main/gensoft-ftgl-2.1.2_1.0_amd64.deb Size: 567854 MD5sum: b3de004266d9ac12774023ddf7ca2e5c SHA1: 1496fb4307dc38519d7a2875218c686c0da323c0 SHA256: 250f035d5b4b0684d77a781935e5c324b3b23500dbb98038ec9556ecc5bc2446 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a free cross-platform Open Source C++ library that uses Freetype2 to simplify rendering fonts in OpenGL applications. License: unknown Vendor: Institut Pasteur Package: gensoft-ftgl-2.4.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5835 Depends: gensoft-xorg-libs-1.1, gensoft-mesa-19.0.8, gensoft-libpng-1.6.37, gensoft-expat-2.4.1, gensoft-gcc-9.2.0, gensoft-freetype-2.10.1, gensoft-libdrm-2.4.100, gensoft-glu-9.0.1, libc6, zlib1g, libbz2-1.0 Filename: pool/main/gensoft-ftgl-2.4.0_1.0_amd64.deb Size: 1562548 MD5sum: ad990ded2e53cb3eadbeec3059d0437a SHA1: 22d0eb9790ac0bd69e153e0f0ec0a2d09e41286f SHA256: c7a92a86d2170c67d02828b0514a82f7bd24a1efa7051713d77e158c0b2b66d4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a free cross-platform Open Source C++ library that uses Freetype2 to simplify rendering fonts in OpenGL applications. License: unknown Vendor: Institut Pasteur Package: gensoft-func-0.4.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 16163 Depends: gensoft-r-3.6.2, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-func-0.4.8_1.0_amd64.deb Size: 4951004 MD5sum: b519f76ed03b7268f6ae7baf96bebb17 SHA1: 7cd78f35c51a9563103f1671d28a4198a81c2667 SHA256: 31344548e2c66bc2061d7a2034d0b2c4dd5c696188867df8828b040249a6738e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FUNC is a set of tools to analyse gene data using the Gene Ontology database. License: unknown Vendor: Institut Pasteur Package: gensoft-funguild-1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 16024 Depends: gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-funguild-1.1_1.0_amd64.deb Size: 5110368 MD5sum: 5cac2020094285598ff9e7fe5abe79fd SHA1: 6612cfe13df143a378e6204dfb525f676ce3989f SHA256: 7e230e80048783b38473e63668e1dd5fae827d4a53c9c4361cd3ac2653dde93b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: parsing OTUs into functional guilds License: unknown Vendor: Institut Pasteur Package: gensoft-fusioncatcher-v1.20 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 103894 Depends: gensoft-picard-tools-2.22.0, libc6, gensoft-blat-36, gensoft-star-2.7.3a, gensoft-r-3.6.2, gensoft-bbmap-38.79, gensoft-bowtie-1.2.3, gensoft-graalvm-ce-java8-20.0.0, gensoft-seqtk-1.0-r68e, gensoft-sra-sdk-2.10.2, gensoft-adm-python-2.7.17, gensoft-bowtie2-2.3.5.1, gensoft-ucsc-tools-v390, gensoft-pigz-2.4 Filename: pool/main/gensoft-fusioncatcher-v1.20_1.0_amd64.deb Size: 27500298 MD5sum: debd095b093b1bc7619b900066fbb977 SHA1: 6c9fa5891f1aeaa5437ce21441b94d43b601b3ec SHA256: 1f79a68553416167c9af4c185084f3132037696b36c705292261d2e9c9973f2a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: FusionCatcher searches for novel/known fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa/HiSeq/NextSeq/MiSeq) from diseased samples. 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License: unknown Vendor: Institut Pasteur Package: gensoft-gapfiller-2.1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 756 Depends: gensoft-boost-1.72.0, zlib1g, gensoft-zstd-1.4.4, gensoft-xz-5.2.4, libc6, gensoft-gcc-9.2.0, libbz2-1.0 Filename: pool/main/gensoft-gapfiller-2.1.2_1.0_amd64.deb Size: 262788 MD5sum: 7d6655c0394b243d922f253a13cc9a73 SHA1: b9b7fc8c22b7eb69849bcbf3c1e97cee490f6fd1 SHA256: 05b218f5df8d261c20a7bc33950c082bda678d14c84a3c64f68b53bcf49abea7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a seed-and-extend local assembler to fill the gap within paired reads. License: unknown Vendor: Institut Pasteur Package: gensoft-gappa-0.8.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5332 Depends: libc6, gensoft-gcc-9.2.0, bc, zlib1g Filename: pool/main/gensoft-gappa-0.8.2_2.0_amd64.deb Size: 1947792 MD5sum: 54483b83451fb43ea7bf955833dcbbde SHA1: b16ea886e11252cd39d40c4c49f806e2f1f8035e SHA256: 9316e578d168f695213b3ca49a43d0af53a8c6a085086e35d6e00fd36daf9eb7 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: gappa is a collection of commands for working with phylogenetic data. 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License: unknown Vendor: Institut Pasteur Package: gensoft-gcta-1.94.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 16305 Depends: gensoft-zstd-1.4.4, zlib1g, gensoft-sqlite-3.31.0, gensoft-gsl-2.6, gensoft-mkl-2020.4.304, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-gcta-1.94.1_1.0_amd64.deb Size: 5405494 MD5sum: 0881f7b32aeb5e471564c18343e856ce SHA1: e46b792406d5a4b3ce8aae5cf8da577dc5898233 SHA256: 5bb6bbd0d8ed0db8482e7b8c0682a0d7c27207af6ab8f80643247f8651974a0c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GCTA (Genome-wide Complex Trait Analysis) is a software package, which was initially developed to estimate the proportion of phenotypic variance explained by all genome-wide SNPs for a complex trait but has been extensively extended for many other analyses of data from genome-wide association studies (GWASs). 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As a library, it presents a single raster abstract data model and single vector abstract data model to the calling application for all supported formats. It also comes with a variety of useful command line utilities for data translation and processing. 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License: unknown Vendor: Institut Pasteur Package: gensoft-gdown-4.6.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 17655 Depends: libgcc-s1, gensoft-adm-python-3.8.1, libc6, zlib1g Filename: pool/main/gensoft-gdown-4.6.0_1.0_amd64.deb Size: 5751590 MD5sum: 85422dc54f6362837a3fccff54fdb03d SHA1: 7a34d4c769c2d27b451679182399466d332fcbc1 SHA256: 1127537a50790fc7d80500738ebaf6055ba840f68fbe7c3c0d3741e34f288ff4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Download a large file from Google Drive License: unknown Vendor: Institut Pasteur Package: gensoft-gemma-0.98.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1587 Depends: zlib1g, gensoft-gsl-2.5, gensoft-openblas-0.3.7, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-gemma-0.98.1_1.0_amd64.deb Size: 790916 MD5sum: 016100ae52650770e4d38e8849c25e54 SHA1: 5f2ba9da36348c42974d34add0a04ecf381fe73f SHA256: 6d50c3c6edfc94cd50368fe7956030280c2fadb859aef8e0ece462282a78c775 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: software implementing the Genome-wide Efficient Mixed Model Association algorithm for a standard linear mixed model and some of its close relatives for genome-wide association studies (GWAS) License: unknown Vendor: Institut Pasteur Package: gensoft-gemma-0.98.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1445 Depends: gensoft-openblas-0.3.7, libc6, gensoft-gsl-2.5, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-gemma-0.98.5_1.0_amd64.deb Size: 743744 MD5sum: 53d394e056224715ee8e94380b3d639a SHA1: 26fff71bf1ab1000e861f7108fb024b7e91d776c SHA256: a55c7fb7bf595634922a008bcab6de419941f62b5433d0b1284a65e2b73ee43b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: software implementing the Genome-wide Efficient Mixed Model Association algorithm for a standard linear mixed model and some of its close relatives for genome-wide association studies (GWAS) License: unknown Vendor: Institut Pasteur Package: gensoft-gemsim-v1.6 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 87358 Depends: libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-gemsim-v1.6_2.0_amd64.deb Size: 29947088 MD5sum: 3d8668d0e85e886bf7b2eecb9b772944 SHA1: 7eba9bb17b2f8f9e643f700458f4ab0ed108bf0a SHA256: 1ca27aa1441d06d504eb2f5409d9aa63a2eeabd10c6d1a3e0735dfb4e1be3014 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: software package for generating realistic simulated next-generation sequencing reads with quality score values License: unknown Vendor: Institut Pasteur Package: gensoft-genecluster-1.59 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1159 Depends: gensoft-freetype-2.10.1, gensoft-xorg-libs-1.1, libc6, zlib1g, gensoft-libpng-1.6.37, gensoft-lesstif-0.95.2, libbz2-1.0 Filename: pool/main/gensoft-genecluster-1.59_1.0_amd64.deb Size: 557474 MD5sum: fca237e1de0cac99f59c2a0b5269790b SHA1: 9cfe2ce25ae733c9543022b77c712ef1ee7c9a00 SHA256: cc4e39ce3644524c623ee723b3f1babd64ffdcac0f370026fd2e70906240b88a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: open source clustering software License: unknown Vendor: Institut Pasteur Package: gensoft-genehunter-2.1-r2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 541 Depends: libc6 Filename: pool/main/gensoft-genehunter-2.1-r2_1.0_amd64.deb Size: 248422 MD5sum: eec8bfc3a5a7c1d2b2431f33756045e8 SHA1: e09b1d5d592ce1bbc702422dbe2c59874ba0852e SHA256: befc520c7cc584e224836886945a76ed511cf169612a9fb9f9441585f6753a3c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Multipoint analysis of pedigree data including non-parametric linkage analysis, LOD-score computation, information-content mapping, haplotype reconstruction License: unknown Vendor: Institut Pasteur Package: gensoft-geneid-v1.4.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7955 Depends: libc6 Filename: pool/main/gensoft-geneid-v1.4.4_1.0_amd64.deb Size: 2687094 MD5sum: 8e3c67799d1894b448fcf436a429f36e SHA1: 2e77dae9d0b29105fb08c3691c3ee67c348f9381 SHA256: 5d945ed41efd9c91daabaf7ad06614640f0bb1c5707b45a046e43a3fe10fa1ad Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program to predict genes in anonymous genomic sequences designed with a hierarchical structure. In the first step, splice sites, start and stop codons are predicted and scored along the sequence using Position Weight Arrays (PWAs). In the second step, exons are built from the sites. Exons are scored as the sum of the scores of the defining sites, plus the the log-likelihood ratio of a Markov Model for coding DNA. Finally, from the set of predicted exons, the gene structure is assembled, maximizing the sum of the scores of the assembled exons. geneid offers some type of support to integrate predictions from multiple source via external gff files and the redefinition of the general gene structure or model is also feasible. The accuracy of geneid compares favorably to that of other existing tools, but geneid is likely more efficient in terms of speed and memory usage. License: unknown Vendor: Institut Pasteur Package: gensoft-genemark-es-4.69 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 237407 Depends: gensoft-adm-python-3.8.1, gensoft-adm-perl-5.30.1, libc6, zlib1g, libgcc-s1, libstdc++6 Filename: pool/main/gensoft-genemark-es-4.69_1.0_amd64.deb Size: 83923934 MD5sum: 12903ad9e92a4d0659923e161c0a6cfe SHA1: d5223526775fa62e270f200949f7335b7adf231f SHA256: 23290e54285a54233fcb9bbcb0818219742c80a84c26b3c80360da236f8eb2da Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A family of gene prediction programs developed at Georgia Institute of Technology, Atlanta, Georgia, USA License: unknown Vendor: Institut Pasteur Package: gensoft-generax-2.1.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 106376 Depends: gensoft-gcc-9.2.0, gensoft-ucx-1.18.0, gensoft-openmpi-5.0.7, gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-generax-2.1.3_1.0_amd64.deb Size: 29062318 MD5sum: f6e1b109cc6f59545959856f3c0ac11e SHA1: d6fbaf885228bfd85d365f1cccb360f14ce4cbdd SHA256: 6be6f00441def27e252887c03ff81bcab0c6899af74ff8a8fe4ec5a7e63e90a4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a parallel tool for species tree-aware maximum likelihood based gene family tree inference under gene duplication, transfer, and loss. License: unknown Vendor: Institut Pasteur Package: gensoft-gengen-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1306 Depends: libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-gengen-1.0.1_1.0_amd64.deb Size: 541422 MD5sum: ffe570a1e97b9b69ee9d88a4c0cb3cc2 SHA1: 6b7de860841205f90b0552ca345d8bc0082a6566 SHA256: ceed047dc78a939e06a6818eb0b6d11c6f6a1d88c1a39bf008299082ecef468e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a suite of free software tools to facilitate the analysis of high-throughput genomics data sets. License: unknown Vendor: Institut Pasteur Package: gensoft-genomad-1.11.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3068907 Depends: libgcc-s1, libc6, gensoft-mmseqs2-15-6f452, libgomp1, zlib1g, gensoft-aragorn-1.2.41, gensoft-adm-python-3.10.7, libstdc++6 Filename: pool/main/gensoft-genomad-1.11.0_1.0_amd64.deb Size: 1263521342 MD5sum: 48c244c46f55afe75ed0a1e8ec583ef6 SHA1: aa2d49375949cb4d4f7c69044bb4b0a3a28cfe00 SHA256: 1e678245a684fdbadcaf02b34e6cccac057cdec265b955ade2dccd7f3858a628 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tool that identifies virus and plasmid genomes from nucleotide sequences. It provides state-of-the-art classification performance and can be used to quickly find mobile genetic elements from genomes, metagenomes, or metatranscriptomes. License: unknown Vendor: Institut Pasteur Package: gensoft-genomad-1.8.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2635699 Depends: libc6, gensoft-adm-python-3.8.1, libgomp1, gensoft-mmseqs2-15-6f452, libgcc-s1, gensoft-aragorn-1.2.41, libstdc++6, zlib1g Filename: pool/main/gensoft-genomad-1.8.1_1.0_amd64.deb Size: 1148286044 MD5sum: 0932739f0a8a84353c7af3ca67ca7c80 SHA1: 4fafa51fd6c2ede90dff0c4bc0e9b7e177336637 SHA256: 2a2b05f92d36d77a4375355785014113a177934dc8a04b26f5cebdf70124fa22 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tool that identifies virus and plasmid genomes from nucleotide sequences. It provides state-of-the-art classification performance and can be used to quickly find mobile genetic elements from genomes, metagenomes, or metatranscriptomes. License: unknown Vendor: Institut Pasteur Package: gensoft-genomeanalysistk-3.6 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 13654 Depends: gensoft-java-1.8.0 Filename: pool/main/gensoft-genomeanalysistk-3.6_2.0_amd64.deb Size: 12604772 MD5sum: 5ab11cca797655f2b91f2b5d90461db6 SHA1: eee0d299ec7f72d7d4151d5a2d44073263af6b45 SHA256: f92fa5595001bbdc7a6050cfa357ea08893e15e6ebd39962c585fffa2503f549 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: software library that makes writing efficient analysis tools using next-generation sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-genomeanalysistk-4.1.9.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 471509 Depends: gensoft-java-1.8.0, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-genomeanalysistk-4.1.9.0_2.0_amd64.deb Size: 449491306 MD5sum: 09251119a36b0e316bb13a8d8cc8164c SHA1: cb4595592f591569cdc253670181c678d839c31b SHA256: c40bbc30cd8bc92e44f4c5080c5d5b7d2d2273b8aeb231f2966cca47839f7741 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: software library that makes writing efficient analysis tools using next-generation sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-genomeanalysistk-4.6.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 770369 Depends: gensoft-graalvm-ce-java19-22.3.1, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-genomeanalysistk-4.6.0.0_1.0_amd64.deb Size: 746383648 MD5sum: fce41d286940f674891e37d008a93a42 SHA1: 39b44b113a76fe5df543c3119824098c932fc82a SHA256: 7d7b5e4043a0ce0bbc8bccd609d65deb6f767e168f574e850f2abcfbfa7d3380 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: software library that makes writing efficient analysis tools using next-generation sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-genomemapper-0.4.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 351 Depends: libc6 Filename: pool/main/gensoft-genomemapper-0.4.4_1.0_amd64.deb Size: 202546 MD5sum: 84ec6e4183222186e1300f83931ee0ce SHA1: 6b625a688ff2a489050b36f334249e6700c1e74b SHA256: 768f354e2921bfcb2fe663dc26b2d3a594ae2d059b10841c6956ac220458d516 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Short read mapping tool License: unknown Vendor: Institut Pasteur Package: gensoft-genomethreader-1.7.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 26115 Depends: libc6 Filename: pool/main/gensoft-genomethreader-1.7.3_2.0_amd64.deb Size: 9919250 MD5sum: 62944ec1f609bf7edc2ec0740817a56a SHA1: 8469fbca7eba1f3438f31ecf66cca0f13beb52b4 SHA256: 13cccf6066835a737359f962d2276637d17ec13c8ce06c494eb1417dd98ede6a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments. License: unknown Vendor: Institut Pasteur Package: gensoft-genometools-1.5.9 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 87150 Depends: libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-genometools-1.5.9_2.0_amd64.deb Size: 27573384 MD5sum: 2a433c6e70a435b5c3e659b52b9a670d SHA1: 9a40761115485c535446694cfe031ea873c607b8 SHA256: 98c4af3d2ca77e75eeb7c8c852338ce29cb835ec478fb533cee49183b70e1d9d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named libgenometools which contains a wide variety of classes for efficient and convenient implementation of sequence and annotation processing software. License: unknown Vendor: Institut Pasteur Package: gensoft-genometools-1.6.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 78901 Depends: libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-genometools-1.6.1_2.0_amd64.deb Size: 25059526 MD5sum: 9f73f6a9b249574c4d0196fd58a8249d SHA1: ec8d7b31a51a209fd1a85b447923ca4252399ff3 SHA256: 862eabc3e3240c481a354a5c4eefeb59db22a478e2801e1b3e0619dc4648be7b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named libgenometools which contains a wide variety of classes for efficient and convenient implementation of sequence and annotation processing software. License: unknown Vendor: Institut Pasteur Package: gensoft-genometools-1.6.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 79272 Depends: libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-genometools-1.6.5_1.0_amd64.deb Size: 25218028 MD5sum: 328a3e9d4096eab5fce780ed4e5d0097 SHA1: 0fa6f528e20714c60af87ecc3409e116efb67caf SHA256: 7f87554d7cb1cd2acd65cac7906084514ef1f75faf485d457e97840082015905 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named libgenometools which contains a wide variety of classes for efficient and convenient implementation of sequence and annotation processing software. License: unknown Vendor: Institut Pasteur Package: gensoft-genomicconsensus-2.3.3 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 788624 Depends: gensoft-singularity-3.8.3 Filename: pool/main/gensoft-genomicconsensus-2.3.3_1.0_amd64.deb Size: 803062728 MD5sum: 98732b58512e814c913eb858367a3e26 SHA1: 15abadf3cfcd74a5ed353978de21d27916a87457 SHA256: a295b139b25a82335267b0074e3124419787bccb4927f2d8122eaa01d25a564f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This tool gets a CRISPR profile by identifying the presence of known spacers and direct repeats (DRs) in a given sequence based on a catalogue. License: unknown Vendor: Institut Pasteur Package: gensoft-genrich-0.6.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 464 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-genrich-0.6.1_2.0_amd64.deb Size: 174276 MD5sum: 613ec259d2f58094ec2f4e06c74dadba SHA1: e772bcacbba6624cf3207590593eedba10a47416 SHA256: 44f3c4a5e3f6bb4dd2ad7b112e0744f86e89dc7822a939798222a336e46393f3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Genrich is a peak-caller for genomic enrichment assays (e.g. ChIP-seq, ATAC-seq). It analyzes alignment files generated following the assay and produces a file detailing peaks of significant enrichment. License: unknown Vendor: Institut Pasteur Package: gensoft-geos-3.13.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 8798 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-geos-3.13.1_1.0_amd64.deb Size: 2482820 MD5sum: 53323aa7c9d32e8504d14c0aea35d49c SHA1: 8ecf518b876f748699ab8f36e33ae3642bcf5ab6 SHA256: fafa8c52d0fdd827ecb73b11bd4267601236d68e3b6be1406ebc11cc47fb2408 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS). As such, it aims to contain the complete functionality of JTS in C++. This includes all the OpenGIS Simple Features for SQL spatial predicate functions and spatial operators, as well as specific JTS enhanced topology functions License: unknown Vendor: Institut Pasteur Package: gensoft-geos-3.8.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 190907 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-geos-3.8.0_1.0_amd64.deb Size: 45898400 MD5sum: 05f50f3d7aaa1cdc94fea21b594b5dc3 SHA1: 6af38047f763db265fa8ece4c3bb20a24f18a19f SHA256: 43b655baae2d3ec114d6023e34d31791638021451adb29d7b486d5c3c39d301e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS). As such, it aims to contain the complete functionality of JTS in C++. This includes all the OpenGIS Simple Features for SQL spatial predicate functions and spatial operators, as well as specific JTS enhanced topology functions License: unknown Vendor: Institut Pasteur Package: gensoft-germline-1.5.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 257 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-germline-1.5.3_1.0_amd64.deb Size: 90020 MD5sum: 56c810bdf6a841ae7234f0e8e9ea6c34 SHA1: 8c135732e60b2d68113c7fbb61781d6f80a1191e SHA256: 1723154e20093b6ca42717d944f3534b785d77d685a65fe5ca9f9e87888a577c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GERMLINE is an algorithm for discovering long shared segments of Identity by Descent (IBD) between pairs of individuals in a large population License: unknown Vendor: Institut Pasteur Package: gensoft-getphylo-0.3.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 160242 Depends: gensoft-diamond-2.1.9, gensoft-fasttree-2.1.11, libstdc++6, libc6, libgcc-s1, zlib1g, gensoft-muscle-3.8.1551, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-getphylo-0.3.2_1.0_amd64.deb Size: 48157964 MD5sum: f028020ce7516098b44c98e42b498088 SHA1: 759a9e864463f7fa344b52f6fb475cdbe295b6af SHA256: e7b3071aef9f9ea2bf83aeaba3ae2cd818a92b09f599f3f7f43db4589b0c35e5 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: getphylo was designed to automatically build multi-locus phylogenetic trees from GenBank files. License: unknown Vendor: Institut Pasteur Package: gensoft-gettext-0.20.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 35223 Depends: libncurses5, gensoft-libiconv-1.16, gensoft-gcc-9.2.0, libtinfo5, libc6 Filename: pool/main/gensoft-gettext-0.20.1_1.0_amd64.deb Size: 11199246 MD5sum: ea55a770aa1c3a4d025355cbcba2fbdd SHA1: e01c9eae19beea9134a2f32593aa8d338930d264 SHA256: 870765e3ba4f28316df457765faebbf7e8cce6135c768bca40223b1576db9733 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Gettext package contains utilities for internationalization and localization. License: unknown Vendor: Institut Pasteur Package: gensoft-gfaffix-0.1.2.4 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 6202 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-gfaffix-0.1.2.4_1.0_amd64.deb Size: 1770486 MD5sum: c2b4d85c333e11573f5790852eb7cee6 SHA1: 5a93e12bc17d862c2a492641f813a75995856375 SHA256: d3613a1f748c14812912daaa4e9012403696ac8311a1b650f612415c26dbdf5b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure. License: unknown Vendor: Institut Pasteur Package: gensoft-gfaffix-0.1.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 82327 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-gfaffix-0.1.4_2.0_amd64.deb Size: 14961440 MD5sum: d5a7866323960c8c5f20bb2bc25c0c51 SHA1: e248267790e6d95c7a2c94c0232595cc05c1cf63 SHA256: 5673f3debc45eec0579b88ba2f6a7a16a2a61507623d35d73682c8aee7ac68cc Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure. License: unknown Vendor: Institut Pasteur Package: gensoft-gfastats-1.3.7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 23411 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-gfastats-1.3.7_1.0_amd64.deb Size: 5610440 MD5sum: 2aa8e744ae99e99e9bea36e5adb9c476 SHA1: 28fbfd5d08e2f739fb3936761faa18189dcad89a SHA256: 9f7c05d8d24d3ea805d0502436868f0199f0a7805489b0dbb32b4228d0367a32 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. License: unknown Vendor: Institut Pasteur Package: gensoft-gfatools-0.5 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 591 Depends: zlib1g, libc6 Filename: pool/main/gensoft-gfatools-0.5_1.0_amd64.deb Size: 214292 MD5sum: 183b200d9c7c33cbd64baf1f565a99f6 SHA1: eb98a2139c8d4cb75a76082cf6ae1c411ce6eb22 SHA256: ced439fc037f95ada5cc50e609b74861517dd11f29276554acae6eef5a62706f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Tools for manipulating sequence graphs in the GFA and rGFA formats License: unknown Vendor: Institut Pasteur Package: gensoft-gff3toembl-1.1.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7648 Depends: gensoft-genometools-1.6.1, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-gff3toembl-1.1.4_1.0_amd64.deb Size: 2350698 MD5sum: eccdecca0a802010282e1949f2f447b8 SHA1: b7ef39aeb64eae8058132ce8c91185c97ea98f9b SHA256: 9589e4c4f37636b35b55b1b5ef5ba4bf2ed9897e5d07b8c78376ce210a6ca4ce Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: converts GFF3 files from the most commonly use prokaryote annotation tool Prokka into a format that is suitable for submission to EMBL. License: unknown Vendor: Institut Pasteur Package: gensoft-gffcompare-0.12.9 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3210 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-gffcompare-0.12.9_1.0_amd64.deb Size: 1121174 MD5sum: 11cb5fe5e51a5b2888c150544eee3041 SHA1: 345ab243efc928a187f5ec552d473b6be4eaf8e4 SHA256: b26695ddf1aa064e6f55a455d0ffc96c54be3ee160b6d6a26422e2ca2860c3c8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF License: unknown Vendor: Institut Pasteur Package: gensoft-gffread-0.12.7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1781 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-gffread-0.12.7_1.0_amd64.deb Size: 620744 MD5sum: 853682f57d949eb4276b573d8b30265c SHA1: 6b0880a3c505791961845f923b6cf5f07df70840 SHA256: 155ec1fee98094fa73ec0b3977b4ae0b51e5607f77d831c343bffc7497682015 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more License: unknown Vendor: Institut Pasteur Package: gensoft-gflags-2.2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 461 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-gflags-2.2.0_1.0_amd64.deb Size: 174400 MD5sum: 5cd78d57217803ef122cf1f98bebbff2 SHA1: 5ba2de9bb1ff4158875948279d79c8a2b796bbb5 SHA256: 14352511be9ef939aba8d87383172003477fcef6c6e5b9084c213c2f09d4dcc3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a C++ library that implements commandline flags processing. License: unknown Vendor: Institut Pasteur Package: gensoft-ggcaller-1.3.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3447486 Depends: gensoft-apptainer-1.2.5 Filename: pool/main/gensoft-ggcaller-1.3.4_1.0_amd64.deb Size: 3506482170 MD5sum: 85215b2928617a9b7096eaebb5e9f353 SHA1: 81b7a0c55e91b476d068bd67ecaa2bb99613735e SHA256: 91a159fb0b93b334d7e47d4589073095995e3968ae9e253513e5e355bb00c9d0 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a bacterial gene caller for pangenome graphs License: unknown Vendor: Institut Pasteur Package: gensoft-ggcaller-1.3.7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1584998 Depends: gensoft-adm-apptainer-1.3.6 Filename: pool/main/gensoft-ggcaller-1.3.7_1.0_amd64.deb Size: 1593553026 MD5sum: fee935408b66513cc514d71e4c6a2927 SHA1: e83236afb902664d7199908c5b0e0df0b416fb01 SHA256: fc469daff74fd3314b3b1aaee55dfdebd7d40c07cec7900857a808d91a51801d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a bacterial gene caller for pangenome graphs License: unknown Vendor: Institut Pasteur Package: gensoft-ggcat-0.1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 836289 Depends: libgcc-s1, libc6 Filename: pool/main/gensoft-ggcat-0.1.0_1.0_amd64.deb Size: 78029986 MD5sum: fe6121bcc68615312772d4953dc3c11b SHA1: 1b6a482c5cb0382197f7b67646e3a5b41f7c6985 SHA256: 5034602226757b6562ff19de464880205c31a8cf884fecf0efd760abf1b47277 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GGCAT is a tool for building compacted (and optionally colored) de Bruijn graphs from raw sequencing data or for merging multiple existing cDBG in a single graph. It also supports sequence queryies to either a colored or non-colored graph (i.e. number/percentage of present kmers). License: unknown Vendor: Institut Pasteur Package: gensoft-ggcat-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 31088 Depends: libc6, libgcc-s1 Filename: pool/main/gensoft-ggcat-1.1.0_1.0_amd64.deb Size: 5896278 MD5sum: d16fb804af4e5a59c55f800007049963 SHA1: 0602f233de7d2d8c2a667f51717b61c022cac477 SHA256: cd919d27ef6a497d767184617d64a86fcc8552a0cbf9533486646b9974f4c6c7 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: GGCAT is a tool for building compacted (and optionally colored) de Bruijn graphs from raw sequencing data or for merging multiple existing cDBG in a single graph. It also supports sequence queryies to either a colored or non-colored graph (i.e. number/percentage of present kmers). License: unknown Vendor: Institut Pasteur Package: gensoft-ghmm-0.9-rc3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4149 Depends: gensoft-libiconv-1.16, zlib1g, libc6, gensoft-xz-5.2.4, gensoft-libxml2-2.9.10, gensoft-gsl-2.6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-ghmm-0.9-rc3_1.0_amd64.deb Size: 1187318 MD5sum: 5b7d32ab3ecf759339117245e20ef0e5 SHA1: 2bac9965845db617dcca2ff02f80e4282a42f3bf SHA256: 861a87b678e869f588a1fbf86782905066951e6d86b11875a42f09e8f485a8f8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: General Hidden Markov Model library (GHMM) is a freely available C library implementing efficient data structures and algorithms for basic and extended HMMs with discrete and continous emissions. License: unknown Vendor: Institut Pasteur Package: gensoft-ghostscript-9.50 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 61198 Depends: gensoft-adm-perl-5.30.1, gensoft-freetype-2.10.1, gensoft-expat-2.2.9, gensoft-fontconfig-2.13.91, libbz2-1.0, zlib1g, gensoft-libtiff-4.1.0, gensoft-libjpeg-turbo-2.0.4, gensoft-xz-5.2.4, libc6, gensoft-libpng-1.6.37 Filename: pool/main/gensoft-ghostscript-9.50_1.0_amd64.deb Size: 31917644 MD5sum: 3e9cb105238831739c6028180732c7c5 SHA1: c7582cbf1b0cb7a83f77120c0151d759b435e23b SHA256: d43e7bb638c8996232c5a3a56386d83a77169168688ade44fc67cb38287025ea Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an interpreter for the PostScript language and for PDF. License: unknown Vendor: Institut Pasteur Package: gensoft-ghostx-1.3.7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 478 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-ghostx-1.3.7_1.0_amd64.deb Size: 242574 MD5sum: 26182e8ddf0c7e4e1cbd8ce4998e93a8 SHA1: ff7533de27f2dba0977de31283e56f7a88e69216 SHA256: 1e27883875b7a1c9ce89582432f749ca54c87bf2347a3752dd4c0f6a59d704f0 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: GHOSTX is a homology search tool which can detect remote homologues like BLAST and is about 100 times more efficient than BLAST by using suffix arrays. GHOSTX outputs search results in the format similar to BLAST-tabular format. License: unknown Vendor: Institut Pasteur Package: gensoft-ghostz-1.0.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 11301 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-ghostz-1.0.2_1.0_amd64.deb Size: 3188766 MD5sum: 1fb9fbe4107744fc1e63ae0f12646089 SHA1: f01cb0d90867eab51dcf94013fb811243182219c SHA256: ebd4a61db197f11d0bc7ce896de81f015e5b5a491a033a9379f47f30d27cb9f3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: GHOSTZ is a homology search tool which can detect remote homologues like BLAST and is about 200 times more efficient than BLAST by using database subsequence clustering. GHOSTZ outputs search results in the format similar to BLAST-tabular format. License: unknown Vendor: Institut Pasteur Package: gensoft-gi2taxonomy-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7 Depends: gensoft-adm-python-2.7.17, gensoft-taxonomy-97aef0c05300 Filename: pool/main/gensoft-gi2taxonomy-1.0_1.0_amd64.deb Size: 4282 MD5sum: d8dc4dd93e2c86ee19289cca6d709bc1 SHA1: 960783e6ecab27786e9c4bb467d52b61a75df397 SHA256: 80826deae97dc1cb7bbe8a8e1df805695316873858a1a06cbe2b67df812d36ad Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Fetch taxonomic representation License: unknown Vendor: Institut Pasteur Package: gensoft-giac-1.5.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 900599 Depends: gensoft-xorg-libs-1.1, gensoft-libpng-1.6.37, gensoft-fltk-1.3.5, libncurses5, zlib1g, gensoft-pari-2.9.5, gensoft-fontconfig-2.13.91, gensoft-adm-perl-5.30.1, gensoft-libjpeg-turbo-2.0.4, gensoft-glu-9.0.1, libreadline8, gensoft-blas-3.8.0, gensoft-expat-2.2.9, libtinfo5, gensoft-mpfr-4.0.2, gensoft-mesa-19.0.8, gensoft-libdrm-2.4.100, gensoft-gcc-9.2.0, gensoft-ntl-11.4.3, gensoft-gsl-2.6, libbz2-1.0, gensoft-freetype-2.10.1, libc6, gensoft-gmp-6.2.0 Filename: pool/main/gensoft-giac-1.5.0_1.0_amd64.deb Size: 185673326 MD5sum: 7db858cd036566f36e30e7bc78522f2b SHA1: 7261f9508fc0364af005fe4445f127cb0deeee04 SHA256: faaa36dfbc0d4277b37ec8743dd1e180e8365205f6c985c6cc5ac9d07b894503 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Giac is a C++ library, it is the CAS computing kernel, it may be used inside other C++ programs, and also Python, Java and Javascript programs. License: unknown Vendor: Institut Pasteur Package: gensoft-giflib-5.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 460 Depends: libc6 Filename: pool/main/gensoft-giflib-5.2.1_1.0_amd64.deb Size: 177944 MD5sum: b9576913b362704ed8fad77877fa0e18 SHA1: db6a8b948a47fd12200ca5321ecf1aa9ae466291 SHA256: 69688750d15e3a4dca6d83e36d030bee9c719078786740833b8690b69e8f492f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GIFLIB is a package of portable tools and library routines for working with GIF images. License: unknown Vendor: Institut Pasteur Package: gensoft-ginac-1.7.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 241609 Depends: libc6, libncurses5, gensoft-gmp-6.2.0, libtinfo5, libreadline8, gensoft-cln-1.3.6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-ginac-1.7.8_1.0_amd64.deb Size: 47120900 MD5sum: 812e07c65cd7a1bb79452f6db76c8e49 SHA1: 0992dccd45e68971b051a464f93aecb9e6e1b673 SHA256: 6f610693b0b18f36553a4bc3dad12bdc7daf7e5d948160b0a9341a3169225449 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GiNaC is a C++ library designed to allow the creation of integrated systems that embed symbolic manipulations together with more established areas of computer science under one roof License: unknown Vendor: Institut Pasteur Package: gensoft-gingr-1.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 42092 Depends: libc6, libbz2-1.0, gensoft-glib-2.58.3, gensoft-harfbuzz-2.6.4, gensoft-libpng-1.6.37, gensoft-pcre2-10.34, gensoft-icu-65.1, gensoft-qt-5.12.1, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-gingr-1.3_1.0_amd64.deb Size: 13071546 MD5sum: 5b4dea58aba0fbe451efca8c5e0dfa86 SHA1: 968d29305f48147ddfae873c7817e614b1c4be13 SHA256: f0320c26ad2a6b660867d50c733351e6dd62365ec32b0c86a62f69f144509593 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Gingr is an interactive tool for exploring large-scale phylogenies in tandem with their corresponding multi-alignments. Gingr can display informative overviews for hundreds or thousands of genomes, while allowing researchers to move quickly to more detailed views of specific subclades and genomic regions, even down to the nucleotide level of their multi-alignments. License: unknown Vendor: Institut Pasteur Package: gensoft-git-2.25.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2690771 Depends: libssl1.1, libc6, gensoft-curl-7.68.0, gensoft-adm-perl-5.30.1, zlib1g, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-git-2.25.0_1.0_amd64.deb Size: 72666758 MD5sum: 3b8cf8a3dc113364c2eb8ab946889a21 SHA1: a9eb86f196e0923a6998c5a04d00781f6341436d SHA256: 7b4e8b5d9aa20afb482d2467c18ec63326f81eb15722d64f72cf14b728e8e881 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency License: unknown Vendor: Institut Pasteur Package: gensoft-git-2.39.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3479614 Depends: gensoft-adm-python-2.7.17, libssl1.1, gensoft-adm-perl-5.30.1, gensoft-curl-7.68.0, zlib1g, libc6 Filename: pool/main/gensoft-git-2.39.1_1.0_amd64.deb Size: 67393068 MD5sum: e7a3696633638cd620f062d56826125e SHA1: 336f8bbc9c7a00a02255fb0dc97970e6738319ac SHA256: eb5678d199a95fa22a90174c8dc72400843e0f4110d45d2a477efb64fb8f4a4d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency License: unknown Vendor: Institut Pasteur Package: gensoft-glib-2.58.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 29034 Depends: libmount1, libpcre2-8-0, libselinux1, libmount-dev, libblkid1, zlib1g, gensoft-pcre2-10.34, gensoft-libffi-3.3, libc6 Filename: pool/main/gensoft-glib-2.58.3_1.0_amd64.deb Size: 9263682 MD5sum: 05219a68b387243bc40efdaeed653d5f SHA1: 6472b89d575aa7e7236d98c5a57cbbbdbf53595f SHA256: 960c538e11c2856a1cddef26763d8cb348d507cf23a2aa68005d418641704717 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GLib provides the core application building blocks for libraries and applications written in C. It provides the core object system used in GNOME, the main loop implementation, and a large set of utility functions for strings and common data structures. License: unknown Vendor: Institut Pasteur Package: gensoft-glib-2.66.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 30325 Depends: gensoft-glib-2.66.7, libblkid1, libglib2.0-0, gensoft-pcre-8.43, gensoft-libiconv-1.16, gensoft-libffi-3.3, gensoft-gobject-introspection-1.66.1, libmount1, libc6, libpcre2-8-0, libpcre3, gensoft-adm-python-2.7.17, gensoft-pcre2-10.34, gensoft-adm-python-3.8.1, libffi7, zlib1g, libselinux1 Filename: pool/main/gensoft-glib-2.66.7_1.0_amd64.deb Size: 9681776 MD5sum: b27c202a8a61b1769e522611dd65c7d4 SHA1: 5332ee6762907053c43a96eac0e8931ba24c1e03 SHA256: 8384c1b330997934dcfebe2814b1a228b7424b63f31d7b6ba46846188774ff31 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GLib provides the core application building blocks for libraries and applications written in C. It provides the core object system used in GNOME, the main loop implementation, and a large set of utility functions for strings and common data structures. License: unknown Vendor: Institut Pasteur Package: gensoft-glibmm-2.58.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 30916 Depends: zlib1g, libpcre2-8-0, libblkid1, libmount1, gensoft-libffi-3.3, libc6, gensoft-gcc-9.2.0, gensoft-glib-2.58.3, libselinux1, gensoft-libsigc++-2.10.4, gensoft-pcre2-10.34 Filename: pool/main/gensoft-glibmm-2.58.1_1.0_amd64.deb Size: 10507718 MD5sum: ff5e98de5e33ded027133b9131b1c78c SHA1: 121b7434e7690cf983e175b48b9af02c5214e3ce SHA256: 2bf1d1198b2e7c715db93eb67ce391da7c0936e4099abc06ab014e61ab600c6e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a C++ API for parts of glib that are useful for C++. License: unknown Vendor: Institut Pasteur Package: gensoft-glimmer-3.02 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5610 Depends: libc6, gensoft-elph-1.0.1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-glimmer-3.02_1.0_amd64.deb Size: 1971838 MD5sum: a0bd79ac179d23b93b4e5222dccdb565 SHA1: 9a1932c318174403ff51ccdfea8a26def736d697 SHA256: 094b304c1f69918843716d5dcb1836177a064e625c25121a2a7e1e992010b4b0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses. License: unknown Vendor: Institut Pasteur Package: gensoft-glimmerhmm-3.0.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 138593 Depends: gensoft-gcc-9.2.0, libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-glimmerhmm-3.0.4_1.0_amd64.deb Size: 45620288 MD5sum: 2f7b90d5e3c5f9e3a59e83739323b2a3 SHA1: 58e662a5aca1afb15edab690488df8742eb7df45 SHA256: 35d9e3d8650781e0bbe7d723a262297446b64efe8b6a1a19daed4eb9905fa80e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM). Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. License: unknown Vendor: Institut Pasteur Package: gensoft-glimpse-1.1.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 48647 Depends: libc6, gensoft-xz-5.2.4, libbz2-1.0, gensoft-boost-1.72.0, gensoft-zstd-1.4.4, gensoft-htslib-1.13, gensoft-curl-7.68.0, zlib1g, libssl1.1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-glimpse-1.1.1_1.0_amd64.deb Size: 47985594 MD5sum: 2f2eb580db9e9d8e99690e5e3d8bada6 SHA1: e7c3a5b5301525f3c061b595bb79b35d48bb32ba SHA256: ed162e214cb75431900203f6450b702cce0add5ab1b7872f704b98a576206de2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Genotype Likelihoods IMputation and PhaSing mEthod is a phasing and imputation method for large-scale low-coverage sequencing studies License: unknown Vendor: Institut Pasteur Package: gensoft-glog-0.4.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5240 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-glog-0.4.0_1.0_amd64.deb Size: 1191306 MD5sum: 02bc936fd2127fc5b0d1d1910bd0c549 SHA1: d770988661b09c4f4fb38736bf9ff5e871b20843 SHA256: 3afe1a8612a0195d488002c43349a3248ec16b9f98dc0ecfca643b9f9e43ff35 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a C++ implementation of the Google logging module. License: unknown Vendor: Institut Pasteur Package: gensoft-glost-0.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 70 Depends: gensoft-openmpi-4.0.5, libc6 Filename: pool/main/gensoft-glost-0.3.1_1.0_amd64.deb Size: 25972 MD5sum: aa414395b4fb4f08e0031cfec8974000 SHA1: ebcbf86795679b781e0241921af0fdd45b2506c0 SHA256: 68c57ebbb06fb35e892dee6c9f2381a3a54deb2710664e0612a8c68558ff7107 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Greedy Launcher Of Small Tasks License: unknown Vendor: Institut Pasteur Package: gensoft-glpk-4.65 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 13807 Depends: libc6 Filename: pool/main/gensoft-glpk-4.65_1.0_amd64.deb Size: 5308678 MD5sum: 300cd5975f66351085169e54703b0b14 SHA1: db61f6be05b2686f604e2cc61ed727f9040c51c8 SHA256: 017ae883e5f0441508d65c51f58eed86a009db9d8079bec12b8e0f1c75c26906 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. 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EM (expectation maximization) algorithm is employed for covertion into GMM. The program gmconvert also has many other useful functions to handle GMM. License: unknown Vendor: Institut Pasteur Package: gensoft-gmfit-20190921 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1951 Depends: libc6 Filename: pool/main/gensoft-gmfit-20190921_1.0_amd64.deb Size: 1047596 MD5sum: b8a88ad65d346e2bfbbd128a134dcfb4 SHA1: 12f49d2813d02e313d5b48e723b6a269ad2f8c41 SHA256: 1bf4ad15e1209c325451fd46c047cfb19348975f33deefbd65efe340a94ab166 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: superimpose several subunit atomic models determined by X-ray crystallograph or NMR into the low resolution 3D density map detemined by electron microscopy License: unknown Vendor: Institut Pasteur Package: gensoft-gmp-6.2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2621 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-gmp-6.2.0_1.0_amd64.deb Size: 799958 MD5sum: 614ff8db3ef189152504a8375834dbc3 SHA1: 3f0ac3d8b7f9590bcc7fd10de43dbd35f0939310 SHA256: e311dd558ecad7ee86166c0033f444b43f12066139bc09eca59cd692d34ad52d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating-point numbers. 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License: unknown Vendor: Institut Pasteur Package: gensoft-go-1.13.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 319873 Depends: libc6 Filename: pool/main/gensoft-go-1.13.6_1.0_amd64.deb Size: 119433840 MD5sum: 2c632796c935eec5ba89a02bc123fc43 SHA1: c75cd2acd23ae8ebd1c005e647efceea9869e312 SHA256: d2e6c0219a89d1d4b11c5d0ed890274a425c413b02ec08c25d740b74dbe495b0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Go programming language License: unknown Vendor: Institut Pasteur Package: gensoft-go-1.15.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 355146 Depends: libc6 Filename: pool/main/gensoft-go-1.15.7_1.0_amd64.deb Size: 120424452 MD5sum: 2c43215289c206a8fb82ca84bfad5948 SHA1: 8c4fbd4b49bc12c546b9847baaa1ea7e1c5f2c5e SHA256: 520b98fbfd03a9e6fbbd2f1f27badcc645a85f77da65b850b3f5ca12b942f6a2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Go programming language License: unknown Vendor: Institut Pasteur Package: gensoft-go-1.17.6 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 398280 Depends: libc6 Filename: pool/main/gensoft-go-1.17.6_1.0_amd64.deb Size: 133910792 MD5sum: e21d6f61afb213b7ce3546e2bf593b1f SHA1: f4226fbfac42393fe88b78b97ee713fd4ae62cb2 SHA256: 83ef95a67858a50ed5f10023ad0b01624503d7dfa954f057b2a6b772a1cf37c7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Go programming language License: unknown Vendor: Institut Pasteur Package: gensoft-go-1.19.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 447840 Depends: libc6 Filename: pool/main/gensoft-go-1.19.1_1.0_amd64.deb Size: 147624654 MD5sum: 28ee6b674f228582b99a74273020110a SHA1: dc7f8526075831bfb329eec395f09336745e65d4 SHA256: 814fd0cd7fa6fe8b131766d2238a0a4fcf64e18b93a74bc339b377c2924e2587 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Go programming language License: unknown Vendor: Institut Pasteur Package: gensoft-go-1.21.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 208741 Depends: libc6 Filename: pool/main/gensoft-go-1.21.4_1.0_amd64.deb Size: 66668472 MD5sum: 6a259da91ca19207e20a86111108baad SHA1: 5dcaccff003e3f2ea30db7c2a9c270e4ed567cfa SHA256: 745e4ab0b46678932a063d22b934a028b332b6c2376bde0db6154e002c81ca03 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Go programming language License: unknown Vendor: Institut Pasteur Package: gensoft-go-1.24.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 246845 Depends: libgcc-s1, libc6, libstdc++6 Filename: pool/main/gensoft-go-1.24.3_1.0_amd64.deb Size: 79627924 MD5sum: 3d1f6b91cedf10fcee2d81d45a973fb3 SHA1: c594d435819a4f5e96e0d6087e5abdd5d9f373fb SHA256: b46bf456356a06ee8342ae29808c8e000b9cd1acf29cc49c4588dc9217de4973 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: The Go programming language License: unknown Vendor: Institut Pasteur Package: gensoft-goalign-0.3.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 14986 Depends: libc6 Filename: pool/main/gensoft-goalign-0.3.1_2.0_amd64.deb Size: 4827198 MD5sum: 33cf2c4e635a0fc491b96af27ae638a3 SHA1: 6de7db940e0051d634114fb0731ed0b22ebaa166 SHA256: 4946f49ecab3e4668bfc7665c708a5febd9a1b56f8cd3f7d03376e9b7e288902 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: GoAlign is a set of command line tools to manipulate phylogenetic trees. 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It is implemented in Go language License: unknown Vendor: Institut Pasteur Package: gensoft-goalign-0.3.6 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 14763 Depends: libc6 Filename: pool/main/gensoft-goalign-0.3.6_2.0_amd64.deb Size: 8157580 MD5sum: 7a68c67ff234cd5380164ac27d47adf6 SHA1: c03034260b66c728d9577a74c8f57960c801a2b5 SHA256: 9ecaab43c591007d30cb1705bf3c53fc6aa01ee89fb233ff4d7af9ecdada19be Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: GoAlign is a set of command line tools to manipulate phylogenetic trees. 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It is implemented in Go language License: unknown Vendor: Institut Pasteur Package: gensoft-gperf-3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 658 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-gperf-3.1_1.0_amd64.deb Size: 237274 MD5sum: 09eb3124de231f4a19cd449414bef7ba SHA1: 54e880a9da703591954a0af2680552888fd39d97 SHA256: 873b275af087bfa0754834faddebaf98456a1a7f38b5c9d400cedb141ce1c0a4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. 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License: unknown Vendor: Institut Pasteur Package: gensoft-gradle-7.3.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 188849 Depends: gensoft-graalvm-ce-java8-20.0.0, gensoft-java-1.8.0, gensoft-java-1.7.0, gensoft-java-13.0.2, gensoft-graalvm-ce-java11-20.0.0 Filename: pool/main/gensoft-gradle-7.3.1_1.0_amd64.deb Size: 137315488 MD5sum: c57e31277478cbefc7fe3b9bf8be03a1 SHA1: 816402708e807a287ef744c542ba1e05cb3813af SHA256: 8e45587ec6857147599413884068b477d62d6451892946a90db2a7b7fb559447 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Gradle is an open-source build automation tool focused on flexibility and performance. 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It focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation. License: unknown Vendor: Institut Pasteur Package: gensoft-graphviz-2.42.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 31379 Depends: gensoft-qt-5.12.1, gensoft-xz-5.2.4, gensoft-libuuid-1.0.3, gensoft-gdk-pixbuf-2.36.12, libpcre3, gensoft-pcre2-10.34, libselinux1, gensoft-fontconfig-2.13.91, gensoft-pixman-0.38.4, zlib1g, gensoft-atk-2.9.4, gensoft-libgd-gd-2.2.5, gensoft-libjpeg-turbo-2.0.4, gensoft-freetype-2.10.1, gensoft-libtiff-4.1.0, gensoft-ghostscript-9.50, gensoft-pango-1.42.4, gensoft-xorg-libs-1.1, gensoft-cairo-1.16.0, gensoft-gtk+-2.24.32, gensoft-gcc-9.2.0, gensoft-glib-2.58.3, libc6, gensoft-libpng-1.6.37, gensoft-harfbuzz-2.6.4, libbz2-1.0, gensoft-libffi-3.3, gensoft-icu-65.1, gensoft-expat-2.2.9 Filename: pool/main/gensoft-graphviz-2.42.3_1.0_amd64.deb Size: 14997082 MD5sum: 92090a16f00fd3beeb980dc3d60b3d39 SHA1: 3b1ee8b4f6930c0c0fde76e702db384c982001f7 SHA256: af2eb1c4bf999e52ef7d608a16c82a37415f006246e50c8db621eed13fe0b4c2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. License: unknown Vendor: Institut Pasteur Package: gensoft-grenedalf-0.3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6106 Depends: gensoft-gcc-9.2.0, libc6, libbz2-1.0, zlib1g, gensoft-xz-5.2.5 Filename: pool/main/gensoft-grenedalf-0.3.0_1.0_amd64.deb Size: 2244532 MD5sum: 5342e87004d12875f73f9afa39e528a2 SHA1: 16c165523db678329621fc79b484e98bee1e7a74 SHA256: 23763dd68dea04b047bd342771ad393d7d0717c1a16821efe3900495bde02d2a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments License: unknown Vendor: Institut Pasteur Package: gensoft-grenedalf-0.6.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 7029 Depends: libbz2-1.0, gensoft-libdeflate-18, zlib1g, libc6, gensoft-xz-5.2.5, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-grenedalf-0.6.3_1.0_amd64.deb Size: 2584840 MD5sum: b2a5dbe585233652e53dd1a7c845407e SHA1: d9983e6794c196e4021346d67109fb46fc8268a8 SHA256: 10f2e309d16b0f014446a30f54f21a31899128b8904445f175ae1bbe7ca0cf6e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments License: unknown Vendor: Institut Pasteur Package: gensoft-grm-maf-ld-20180708 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 81 Depends: gensoft-gsl-2.6, libc6, zlib1g, gensoft-mkl-2020.4.304, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-grm-maf-ld-20180708_2.0_amd64.deb Size: 31852 MD5sum: b9056d3e99fb1ffbf804145cea543e80 SHA1: 3140bb5f88d449de7a0c012e17f2e54a69924e9c SHA256: d7702b3688e059ba385aafa217e1beee95a772f56bf8d57b81dc9096580cd31d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: tool to help estimating how the sizes of SNP effects on a given polygenic human trait or disease depend on their minor allele frequency (MAF) in the population and their level of linkage disequilibrium (LD). License: unknown Vendor: Institut Pasteur Package: gensoft-gromacs-2020 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 28914 Depends: libc6, gensoft-adm-perl-5.30.1, gensoft-blas-3.8.0, gensoft-openmpi-4.0.5, gensoft-xorg-libs-1.1, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-gromacs-2020_2.0_amd64.deb Size: 11934444 MD5sum: d344c5282b2dc800530e6a335fe2d7bc SHA1: 0317dd1844ba1e513b5b5784b1b0fe64f6eb18eb SHA256: 013d8749ec82e85fc30bbe0137f792a1892213774ff0711a22af22cd40cf8b76 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: gromacs is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. License: unknown Vendor: Institut Pasteur Package: gensoft-gromacs-2020.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 84162 Depends: gensoft-cuda-11.1, zlib1g, gensoft-gcc-9.2.0, libc6, gensoft-blas-3.8.0, gensoft-adm-perl-5.30.1, gensoft-openmpi-4.0.5, gensoft-xorg-libs-1.1 Filename: pool/main/gensoft-gromacs-2020.4_2.0_amd64.deb Size: 36913444 MD5sum: 3576cce275c5ad2fa324e55a0e813dc3 SHA1: c3b94730a6cef80b3fdd7fc81b4ff392ca4ebb1c SHA256: b4acf09ef8a4e09f6cc4214ed3cc3d311788ea5f21cd35363d41316146101303 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: gromacs is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. License: unknown Vendor: Institut Pasteur Package: gensoft-gromacs-2024.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 88449 Depends: gensoft-gcc-9.2.0, gensoft-cuda-12.2, gensoft-blas-3.8.0, gensoft-adm-perl-5.30.1, gensoft-openmpi-4.0.5, libc6, gensoft-fftw-3.3.8, zlib1g Filename: pool/main/gensoft-gromacs-2024.2_1.0_amd64.deb Size: 23708780 MD5sum: c6d30cf5bcafb1480a6a31fae466b8d0 SHA1: 6ce29e5dc8d858a51fd802d509848f29013b5e4d SHA256: 63215b1ccc822d72dbd7504b0bad2466dd418912e28cbc71091439a008e16c35 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: gromacs is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. License: unknown Vendor: Institut Pasteur Package: gensoft-gromacs-2025.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 155593 Depends: gensoft-openmpi-4.1.5, gensoft-adm-perl-5.30.1, libc6, gensoft-gcc-9.2.0, gensoft-cuda-12.8, gensoft-gcc-12.3.0, gensoft-blas-3.8.0, zlib1g Filename: pool/main/gensoft-gromacs-2025.0_1.0_amd64.deb Size: 56596576 MD5sum: f23170b8ccd5ded76e1ba9126e890d48 SHA1: 23ff41b673f2a21c3fea6e0281de9ed7f601ccb8 SHA256: 97fd91974243cc56fc712bbf381b3b7b833c58cd330291e20e0e3826b28262fd Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: gromacs is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. License: unknown Vendor: Institut Pasteur Package: gensoft-gromacs-2025.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 38461 Depends: gensoft-openmpi-5.0.7, gensoft-blas-3.8.0, libc6, gensoft-adm-perl-5.30.1, gensoft-ucx-1.18.0, gensoft-gcc-12.3.0, zlib1g Filename: pool/main/gensoft-gromacs-2025.2_1.0_amd64.deb Size: 15271604 MD5sum: 0b35bcaa31ffe8bc2cedb99691ac5282 SHA1: 3a046b09b52397aa8889a33f741d4d3b0dfa3954 SHA256: 31661feac69e3263e76daff1e0250aef1c90e0dfbcf49857d43a95fa282b197a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: gromacs is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. License: unknown Vendor: Institut Pasteur Package: gensoft-groopm-0.3.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 248830 Depends: gensoft-bamm-1.7.3, zlib1g, gensoft-adm-python-2.7.17, libc6, libbz2-1.0 Filename: pool/main/gensoft-groopm-0.3.5_1.0_amd64.deb Size: 77823950 MD5sum: ab06258ac1819eceb33ea42988b9c1fd SHA1: 9afe7c146c01d8829bb17e22477a509271032756 SHA256: 93be6de278b65cf8e5bc23bbc7f51f5afe376a6c92df2de091b55eec96135597 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GroopM is a metagenomic binning toolset. It leverages spatio-temoral dynamics (differential coverage) to accurately (and almost automatically) extract population genomes from multi-sample metagenomic datasets. License: unknown Vendor: Institut Pasteur Package: gensoft-growthpred-v1.07 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5410 Depends: libc6, gensoft-blast-2.2.26, gensoft-emboss-6.6.0, gensoft-clustalw-2.1, gensoft-primer3-2.4.0, gensoft-r-3.6.2 Filename: pool/main/gensoft-growthpred-v1.07_1.0_amd64.deb Size: 1895160 MD5sum: 754fd94f66c8d1af3a13b149d42291d6 SHA1: bd730d354dc71eef3bf033fdb448ab7d11204838 SHA256: 29f969ccbd73f05dbac5d73cccfc82373efa350011bfb4cbf291f4b006720b0f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Sequence-based Prediction of Minimum Generation Times for Bacteria and Archaea License: unknown Vendor: Institut Pasteur Package: gensoft-gruppi-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 38 Depends: libc6 Filename: pool/main/gensoft-gruppi-1.0_1.0_amd64.deb Size: 13934 MD5sum: 34cd793bd60c1e553b867e872357808f SHA1: 90354a79cd5afff7aca15bae88a52dcb0d40b1bd SHA256: 30e76d0a94ec83a59141792b60d15c5a0df6c2fdddaa1b3a3e5ec56ba04d7838 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Clusters of binding sites License: unknown Vendor: Institut Pasteur Package: gensoft-gsl-1.16 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 37960 Depends: libc6 Filename: pool/main/gensoft-gsl-1.16_1.0_amd64.deb Size: 9766182 MD5sum: 8e8d3f8b7c05108b19230fb492ad0d46 SHA1: d8d7fdc8c2e4c8e29b6783207d3d311ab3e761a3 SHA256: c780bd2906d91d22a9749fa0de8282e63d21515dcd42baed2f4e5a6cc8b0296a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a numerical library for C and C++ programmers, that provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. There are over 1000 functions in total with an extensive test suite. License: unknown Vendor: Institut Pasteur Package: gensoft-gsl-2.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 45019 Depends: libc6 Filename: pool/main/gensoft-gsl-2.5_1.0_amd64.deb Size: 11637564 MD5sum: 7ae2c27fa37c46fce2b7e2c5e9901f26 SHA1: 7e2df43ee17356cf907cbabc91cfc18be8794f2b SHA256: 53f3965137d65b2d11531dd4bb714ef5fcc02cb8a9e838d8264929ce8eb99503 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a numerical library for C and C++ programmers, that provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. There are over 1000 functions in total with an extensive test suite. License: unknown Vendor: Institut Pasteur Package: gensoft-gsl-2.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 49063 Depends: libc6 Filename: pool/main/gensoft-gsl-2.6_1.0_amd64.deb Size: 12549310 MD5sum: 98da71ca08d09cd70127aeee43eabed8 SHA1: 80a3c03aabcd3dc947d5aae3d75663fb1bf87e48 SHA256: 8920356d103e943f56e919e4ecf89850d3cb8217f2a6a89acd26b8bbd9d4c35b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a numerical library for C and C++ programmers, that provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. There are over 1000 functions in total with an extensive test suite. License: unknown Vendor: Institut Pasteur Package: gensoft-gsl-2.8 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 52023 Depends: libc6 Filename: pool/main/gensoft-gsl-2.8_1.0_amd64.deb Size: 13370348 MD5sum: 3577021ab413a3811c41d1b58ab72c96 SHA1: dda83046b9140ce950166cfda903e60a8b606c1a SHA256: d9f4ebb33565c029c6a76e93e32182dca84f6037bd87d2340d07851e5e54ebae Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a numerical library for C and C++ programmers, that provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. There are over 1000 functions in total with an extensive test suite. License: unknown Vendor: Institut Pasteur Package: gensoft-gtdbtk-1.3.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 424883 Depends: gensoft-prodigal-2.6.3.pp1, gensoft-hmmer-3.3, gensoft-mash-2.2, gensoft-fastani-1.3, gensoft-adm-python-3.8.1, gensoft-pplacer-v1.1-alpha19, gensoft-fasttree-2.1.11 Filename: pool/main/gensoft-gtdbtk-1.3.0_2.0_amd64.deb Size: 131503594 MD5sum: ec91c8cb75af9de3b1f8707ae35be91c SHA1: 10fabe006cd607ffdb1e2884d389d9a4a923908b SHA256: 84f4d5ab03bfa734dd5399fa20d50212e71066afa9d61b66a5006cb1e5b29d25 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB. License: unknown Vendor: Institut Pasteur Package: gensoft-gtdbtk-1.5.0 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 414613 Depends: gensoft-adm-python-3.8.1, gensoft-fastani-1.33, gensoft-hmmer-3.3, gensoft-prodigal-2.6.3.pp1, gensoft-fasttree-2.1.11, gensoft-mash-2.2, gensoft-pplacer-v1.1-alpha19 Filename: pool/main/gensoft-gtdbtk-1.5.0_3.0_amd64.deb Size: 130612264 MD5sum: 51c9c3d96df0e2fd48156db613713e07 SHA1: 5868759cc1afac7b2f5fdc439728a4a24a6c8dea SHA256: 52e93e5a93c820fec39fee78b6b1c6fa947ab8598349c5891fe5ddfd522564ed Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB. License: unknown Vendor: Institut Pasteur Package: gensoft-gtdbtk-2.1.1 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 414704 Depends: gensoft-mash-2.2, gensoft-adm-python-3.8.1, libstdc++6, zlib1g, gensoft-prodigal-2.6.3.pp1, libc6, gensoft-fastani-1.33, gensoft-pplacer-v1.1-alpha19, gensoft-fasttree-2.1.11, gensoft-hmmer-3.3, libgcc-s1 Filename: pool/main/gensoft-gtdbtk-2.1.1_3.0_amd64.deb Size: 130642508 MD5sum: 85c00cfad1a32bf3a2a325d82cb8c3c6 SHA1: a96d265d86790de842fca549cf7a6608ef39b663 SHA256: 0cb648cc47d522618fad43b520fa1ed368466cdc82f4ce5bf1c9ce830f230e37 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB. 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License: unknown Vendor: Institut Pasteur Package: gensoft-gtk+-2.24.32 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 52199 Depends: gensoft-harfbuzz-2.6.4, gensoft-expat-2.2.9, gensoft-glib-2.58.3, gensoft-atk-2.9.4, gensoft-adm-python-2.7.17, gensoft-libffi-3.3, libbz2-1.0, gensoft-gdk-pixbuf-2.36.12, libselinux1, libc6, gensoft-pango-1.42.4, gensoft-fontconfig-2.13.91, libpcre3, zlib1g, gensoft-pixman-0.38.4, gensoft-libpng-1.6.37, gensoft-cairo-1.16.0, gensoft-xorg-libs-1.1 Filename: pool/main/gensoft-gtk+-2.24.32_1.0_amd64.deb Size: 14824116 MD5sum: e38655043d1ff742848d9f466e6152fa SHA1: f0c30034ab96aff578ea2ff35993e497410b6c5e SHA256: 914411cafaa6e5bc482c1279dc7e904ff44638046327c90ea72758353f4f2b2b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GTK+, or the GIMP Toolkit, is a multi-platform toolkit for creating graphical user interfaces. Offering a complete set of widgets, GTK+ is suitable for projects ranging from small one-off tools to complete application suites. License: unknown Vendor: Institut Pasteur Package: gensoft-gtk+-3.24.25 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 62264 Depends: gensoft-libffi-3.2.1, gensoft-libpng-1.6.37, gensoft-gdk-pixbuf-2.42.2, libpcre2-8-0, gensoft-libffi-3.3, gensoft-xorg-libs-1.1, gensoft-harfbuzz-2.6.7, gensoft-fontconfig-2.13.91, libcom-err2, gensoft-glib-2.66.7, gensoft-expat-2.2.9, gensoft-cairo-1.17.4, gensoft-nettle-3.5.1, libgssapi-krb5-2, gensoft-atk-2.36.0, gensoft-pixman-0.38.4, gensoft-gmp-6.2.0, libkrb5support0, libblkid1, gensoft-gnutls-3.6.11, gensoft-wayland-protocols-1.20, zlib1g, gensoft-at-spi2-core-2.39.1, gensoft-gcc-9.2.0, gensoft-pcre-8.43, gensoft-at-spi2-atk-2.38.0, gensoft-dbus-1.13.12, gensoft-pcre2-10.34, libbz2-1.0, gensoft-libiconv-1.16, libkeyutils1, libk5crypto3, gensoft-libxkbcommon-0.8.4, gensoft-cups-2.3.1, libcrypt1, libfribidi0, gensoft-pango-1.48.2, libc6, gensoft-freetype-2.10.1, libkrb5-3, libmount1, gensoft-libepoxy-1.5.5, gensoft-wayland-1.19.0, libselinux1 Filename: pool/main/gensoft-gtk+-3.24.25_1.0_amd64.deb Size: 19361942 MD5sum: 256cd07df050612e4e685e2258e1015d SHA1: f249df3d530b3d60ff4f10daa9ecf13dc6b47c3b SHA256: b213d1c0f3451839a327df0d303a3426d55e0e7e0b8795a3c5a0f582f13360e2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GTK+, or the GIMP Toolkit, is a multi-platform toolkit for creating graphical user interfaces. Offering a complete set of widgets, GTK+ is suitable for projects ranging from small one-off tools to complete application suites. License: unknown Vendor: Institut Pasteur Package: gensoft-gubbins-2.4.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 73596 Depends: zlib1g, gensoft-raxml-8.2.12, gensoft-iq-tree-1.6.12, gensoft-fasttree-2.1.11, gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-gubbins-2.4.1_1.0_amd64.deb Size: 21418032 MD5sum: 0d697d42e5110f35e71739820169202e SHA1: 0acccc8c44f10d31405840f24661aa258e829d57 SHA256: cd3b5274f43b4732536d9029ac5c4887af65e2bb3d892d74c0225a8d4218eb9c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. License: unknown Vendor: Institut Pasteur Package: gensoft-gubbins-3.2.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 341145 Depends: gensoft-rapidnj-2.3.2, libgomp, libstdc++, gensoft-raxml-ng-1.0.1, zlib, gensoft-adm-python-3.8.1, gensoft-fasttree-2.1.11, libgcc, gensoft-iq-tree-1.6.12, glibc, gensoft-raxml-8.2.12 Filename: pool/main/gensoft-gubbins-3.2.0_1.0_amd64.deb Size: 109744978 MD5sum: 7928043883c7d56b4acef81a11f86c5f SHA1: 10d6953eafc9b765f64f3e4555e3e6f926161fa7 SHA256: fb996e799fbae82c1dc1ce20d19a344d97654ece925548e32b68bf4f43177adb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. License: unknown Vendor: Institut Pasteur Package: gensoft-gushr-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 3870 Depends: gensoft-augustus-3.4.0, libc6, gensoft-adm-python-3.8.1, gensoft-graalvm-ce-java8-20.0.0, gensoft-samtools-1.10 Filename: pool/main/gensoft-gushr-1.0.0_1.0_amd64.deb Size: 3680614 MD5sum: a8c247ca5c381a1073668317220369a0 SHA1: 9a5aed5074c871772c012bced69e9842b2df4382 SHA256: 65971b6d532b10c3dcec9c99a7d2da4ecc059b739fad0feb9ab1a59914eab40f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Assembly-free construction of UTRs from short read RNA-Seq data on the basis of coding sequence annotation License: unknown Vendor: Institut Pasteur Package: gensoft-gutsmash-1555cd7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 589946 Depends: gensoft-diamond-0.9.30, zlib1g, libc6, gensoft-glimmerhmm-3.0.4, libstdc++6, gensoft-prodigal-2.6.3.pp1, gensoft-adm-python-3.8.1, libgcc-s1, gensoft-hmmer-3.3.2, gensoft-muscle-5.1, gensoft-blast+-2.13.0, gensoft-fasttree-2.1.11 Filename: pool/main/gensoft-gutsmash-1555cd7_1.0_amd64.deb Size: 180129410 MD5sum: c91d501a57ac54f66c04f7e296969898 SHA1: 31c1942402e15ff2ab95dc821c86b827fa4cd52e SHA256: c573f744badbd5cd79833973133c825b0780b45b4be04593e2ccb6e19f7ccc36 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A new approach to functionally profile the human microbiome for specialized primary metabolic gene clusters License: unknown Vendor: Institut Pasteur Package: gensoft-gzip-1.13 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 536 Depends: libc6 Filename: pool/main/gensoft-gzip-1.13_1.0_amd64.deb Size: 201280 MD5sum: 09e52a51e9709da04f22c24ea0825d69 SHA1: eebdb2b7c6091241f6ce094bd00b98ece5f99ec9 SHA256: 609c0e7ddcc1a8a2312e9917fd9c273512d344abe0d7580d7d54f12e3e974699 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: compress or expand files License: unknown Vendor: Institut Pasteur Package: gensoft-gzstream-1.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 42 Depends: gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-gzstream-1.5_1.0_amd64.deb Size: 12142 MD5sum: 13a576310052c0c52538a72f2e7e66a4 SHA1: 8cfd05bfe35246739ce0b8306f3f3856d034a9e4 SHA256: e438c876bfd2bc7d40179d6f0253f624f434c457a60c94993569e4fffdd71929 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Gzstream is a small C++ library, basically just a wrapper, that provides the functionality of the zlib C-library in a C++ iostream. License: unknown Vendor: Institut Pasteur Package: gensoft-haddock3-2024.12.0b7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 512140 Depends: gensoft-adm-python-3.10.7, libstdc++6, gensoft-openmpi-4.0.5, libgcc-s1, zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-haddock3-2024.12.0b7_1.0_amd64.deb Size: 139497520 MD5sum: 3d268d0dd9a8881b9226357fd38656cf SHA1: 46d30dfd27c87401070ee8d365882b78b95671d4 SHA256: f57ced872ef781943cc9f51f92f88f0b8d66d2a284f8d35957f2888ddc2f03ba Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: HADDOCK, standing for High Ambiguity Driven protein-protein DOCKing, is a widely used computational tool for the integrative modeling of biomolecular interactions. License: unknown Vendor: Institut Pasteur Package: gensoft-hal-v2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1019214 Depends: gensoft-gcc-9.2.0, libstdc++6, zlib1g, libgcc-s1, gensoft-adm-python-2.7.17, libc6 Filename: pool/main/gensoft-hal-v2.1_1.0_amd64.deb Size: 288645304 MD5sum: 309f5edf7f8d7ada65abea2059b5740e SHA1: 3e9fc52a395c302680772bd41e5144f0b92284d6 SHA256: 59f13f0463dd64c83add7750f738a02f49d1e16ff22bf7e7cbfd359b6e804e61 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Hierarchical Alignment (HAL) Format API (v2.1). HAL is a structure to efficiently store and index multiple genome alignments and ancestral reconstructions. HAL is a graph-based representation which provides several advantages over matrix/block-based formats such as MAF, such as improved scalability and the ability to perform queries with respect to an arbitrary reference or subtree. This package includes the HAL API and several analysis and conversion tools License: unknown Vendor: Institut Pasteur Package: gensoft-hal-v2.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1738211 Depends: gensoft-gcc-9.2.0, libc6, gensoft-adm-python-2.7.17, libstdc++6, libgcc-s1 Filename: pool/main/gensoft-hal-v2.2_1.0_amd64.deb Size: 482996742 MD5sum: 3a9b9209ef3d0db68ed5b2f1db17c419 SHA1: 8e3faa2d98860b6eb681c1df7381c5a91f271311 SHA256: 080ade86f7f603f0f84ffab13f71ef23cceb7945c70a7daeca6cbd80620603e9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Hierarchical Alignment (HAL) Format API (v2.1). HAL is a structure to efficiently store and index multiple genome alignments and ancestral reconstructions. HAL is a graph-based representation which provides several advantages over matrix/block-based formats such as MAF, such as improved scalability and the ability to perform queries with respect to an arbitrary reference or subtree. This package includes the HAL API and several analysis and conversion tools License: unknown Vendor: Institut Pasteur Package: gensoft-hal2vg-1.0.16 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 139617 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-hal2vg-1.0.16_1.0_amd64.deb Size: 38477274 MD5sum: d02be4976b3a9b1016ad5f0605ab58ad SHA1: 61b7e7d02d6f262d11cdcc017e14949f51e2cf90 SHA256: bf6733cfc06ee31c1a60290f51dc968123004991478e666af6e172579a1a7e18 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-hal2vg-1.0.17 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 140849 Depends: gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-hal2vg-1.0.17_1.0_amd64.deb Size: 38781584 MD5sum: ec1b689b8b4a259393b7b50f3ae986a0 SHA1: cc6594beee4cf3ecbbb2bc906ff4dd41788484f7 SHA256: c28b37671b5c2bf89a8e689adfa5344c9943f83a58bd50c9dbdccadb4b7ea62a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-hapbin-1.3.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 13030 Depends: gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-hapbin-1.3.0_1.0_amd64.deb Size: 3275476 MD5sum: c40a6cad41abc6feecc2e5b92c27c04e SHA1: 93f10029cae2440dbef3120e5e6cde83ce3e8e88 SHA256: c0a1fba4c11b0eeaf8640e7fb37280841a04f0be7f885a8ab2e01a2f51f10640 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: hapbin is a collection of tools for efficiently calculating Extended Haplotype Homozygosity (EHH), the Integrated Haplotype Score (iHS) and the Cross Population Extended Haplotype Homozogysity (XP-EHH) statistic. License: unknown Vendor: Institut Pasteur Package: gensoft-harfbuzz-2.6.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 52577 Depends: gensoft-cairo-1.16.0, zlib1g, gensoft-expat-2.2.9, gensoft-glib-2.58.3, gensoft-gcc-9.2.0, gensoft-xorg-libs-1.1, gensoft-fontconfig-2.13.91, gensoft-freetype-2.10.1, gensoft-libpng-1.6.37, libc6, gensoft-pixman-0.38.4, libbz2-1.0 Filename: pool/main/gensoft-harfbuzz-2.6.4_1.0_amd64.deb Size: 15921452 MD5sum: 74fd342871505052d2ab87ed84ccc64a SHA1: 896553d32d6d3d6daf3a92edf0a069bcf365b65c SHA256: 8495e79f4a160c6981b6cde190b8fb6b7d63897a0d1e4e98fe61b596afbfb217 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-harfbuzz-2.6.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 36613 Depends: gensoft-libpng-1.6.37, gensoft-libiconv-1.16, gensoft-pcre-8.43, gensoft-icu-65.1, gensoft-expat-2.2.9, gensoft-gcc-9.2.0, zlib1g, gensoft-pixman-0.38.4, gensoft-xorg-libs-1.1, gensoft-fontconfig-2.13.91, gensoft-freetype-2.10.1, libc6, gensoft-cairo-1.17.4, gensoft-glib-2.66.7, libbz2-1.0, gensoft-libffi-3.3 Filename: pool/main/gensoft-harfbuzz-2.6.7_1.0_amd64.deb Size: 11232618 MD5sum: 0cab7b6e75edf8177d2e0a6511a6ea5a SHA1: 4d6014d8ed2b1aea1d8e82320e6d318fb29cf4af SHA256: f4186d28858a4dd7bb85266f83cf3fe9790009fda4413527fab95a00d9d99b58 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-harvest-tools-1.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 32475 Depends: gensoft-gcc-9.2.0, libc6, gensoft-zlib-1.2.11 Filename: pool/main/gensoft-harvest-tools-1.3_1.0_amd64.deb Size: 8470846 MD5sum: 5bcbe2ed5a7c62d537dfbaad59317cb2 SHA1: 1ad9e57adb86a1db7340fc341d58e2c06274f319 SHA256: 3b86f0ec64c1226d1671105656c9dc3ec1d2ea14ba6ba6eff4c4e1723df5f5a3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: HarvestTools is a utility for creating and interfacing with Gingr files, which are efficient archives that the Harvest Suite uses to store reference-compressed multi-alignments, phylogenetic trees, filtered variants and annotations. Though designed for use with Parsnp and Gingr, HarvestTools can also be used for generic conversion between standard bioinformatics file formats. License: unknown Vendor: Institut Pasteur Package: gensoft-hclust2-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 238958 Depends: libgcc-s1, gensoft-adm-python-3.8.1, libstdc++6, libc6 Filename: pool/main/gensoft-hclust2-1.0.0_1.0_amd64.deb Size: 83022802 MD5sum: f6e5a39fb4a0fb49437c683af17abecd SHA1: 0c1b24c2d9362756a0c1997eec45c66ffdf14d41 SHA256: e970eb46955f5815f70b492f2467867588e9a9e72ed5b03758071b4ad5fe63b3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publication. License: unknown Vendor: Institut Pasteur Package: gensoft-hdf5-1.10.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 20190 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-hdf5-1.10.6_1.0_amd64.deb Size: 6715724 MD5sum: 93c8bb780f13a1b8e32f498f44c42158 SHA1: d299a958e630c26189a18df680ee665b0c7b3755 SHA256: a7aed82293f8e3e9d81db07ca9d499c8bd0ac5c97691ecf2539f0ecca309b570 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format. License: unknown Vendor: Institut Pasteur Package: gensoft-hdf5-1.8.18 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 15109 Depends: gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-hdf5-1.8.18_1.0_amd64.deb Size: 4197898 MD5sum: 24815bce4bef24eaf0459e12487752bd SHA1: 02b53703f912b5d2f595213101b990c359fa5404 SHA256: 2aaafa264172e31d55ccd1e04b602553feda51fccfd59d6e3f2d595b1411a30b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format. License: unknown Vendor: Institut Pasteur Package: gensoft-help2man-1.47.12 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 42 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-help2man-1.47.12_1.0_amd64.deb Size: 16612 MD5sum: 0139a28062a7e5e1e90917f33646bbd9 SHA1: 57bf35d39e402896951f86537da4c81961e97f69 SHA256: b05426d12dc8bcc154bc086975fffc265f01bfe6525ae14f50f0b07dc679616d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-hgtector-2.0b3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 375393 Depends: gensoft-adm-python-3.8.1, gensoft-blast+-2.13.0, libc6, gensoft-diamond-2.0.15 Filename: pool/main/gensoft-hgtector-2.0b3_2.0_amd64.deb Size: 119194012 MD5sum: 319a4f950dc9b6cf0ba40bc39a310c7f SHA1: d3191e6265be5de53c758744d3fb117c0ffa0300 SHA256: 5909984f9d43ad31ea4fb94a8fa1b334ef3c56ee0bed6cd6cb8b227613c16f0b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: HGTector2 - Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns. License: unknown Vendor: Institut Pasteur Package: gensoft-hhsuite-3.2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 129834 Depends: gensoft-psipred-4.02, gensoft-blast-2.2.26, gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0, gensoft-dssp-2.2.1, gensoft-adm-python-3.8.1, libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-hhsuite-3.2.0_1.0_amd64.deb Size: 49295248 MD5sum: 578b0e0c6559440a815c571e2e58ab0e SHA1: 52b43512ada53a0c6d11d58aa5ec448b44a22416 SHA256: 7c99d9aa11676e0f04b1b59ef78910c215dfb5b6028468a6261c96d5db6d2756 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). 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License: unknown Vendor: Institut Pasteur Package: gensoft-hicexplorer-3.7.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 742228 Depends: gensoft-adm-python-3.10.7, libstdc++6, zlib1g, libgomp1, libgcc-s1, libc6 Filename: pool/main/gensoft-hicexplorer-3.7.3_1.0_amd64.deb Size: 235329070 MD5sum: e1785cd42c1d4617f6674f9cd53305b9 SHA1: 94707500bfe7355154437c9b620c97e61a703665 SHA256: 28b8ea61309624ead124bc365635fef5f652bd0898d1690555e3c6d63bc63081 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a powerful and easy to use set of tools to process, normalize and visualize Hi-C data. 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License: unknown Vendor: Institut Pasteur Package: gensoft-hops-0.35 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 75049 Depends: gensoft-r-4.1.0, gensoft-java-1.8.0, gensoft-malt-0.4.1 Filename: pool/main/gensoft-hops-0.35_1.0_amd64.deb Size: 73794528 MD5sum: ff0707aa932570950de7185ceb2d3b20 SHA1: 8adbf5fec6025c862b4b31c578c9faa60f3d14db SHA256: 135c486c2b3015a23bffc16f7d1d1c52cfce67e99881decdee3c66ff3af0512d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a java pipeline which focuses on screening MALT data for the presence of a user-specified list of target species License: unknown Vendor: Institut Pasteur Package: gensoft-html4blast-1.7a Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 737 Depends: gensoft-freetype-2.10.1, zlib1g, gensoft-libjpeg-turbo-2.0.4, gensoft-adm-perl-5.30.1, gensoft-libpng-1.6.37, gensoft-fontconfig-2.13.91, gensoft-xorg-libs-1.1, libbz2-1.0, gensoft-xz-5.2.4, libc6, gensoft-expat-2.2.9, gensoft-libtiff-4.1.0, gensoft-libgd-gd-2.2.5 Filename: pool/main/gensoft-html4blast-1.7a_1.0_amd64.deb Size: 236310 MD5sum: 82278a7f98a9aafbab2ea953c6fd16d0 SHA1: 735058c4857b6f11b6f6efb9c789c62f815c2080 SHA256: 8c8b54d244a1e104ce092c1aa8f24830148915e639f630fee9522a09c7ffe96d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A simple Text to HTML blast results formatter License: unknown Vendor: Institut Pasteur Package: gensoft-htqc-1.92.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 209235 Depends: gensoft-cairo-1.16.0, gensoft-xorg-libs-1.1, gensoft-freetype-2.10.1, gensoft-expat-2.2.9, gensoft-libpng-1.6.37, libc6, zlib1g, gensoft-adm-perl-5.30.1, libbz2-1.0, gensoft-gcc-9.2.0, gensoft-fontconfig-2.13.91, gensoft-pixman-0.38.4 Filename: pool/main/gensoft-htqc-1.92.3_1.0_amd64.deb Size: 49791830 MD5sum: 3c879946802d79592d46054e0870ebae SHA1: 22c300bfd233dd894eb1e60740caa5a11fa70bc7 SHA256: 6504d3a2588e0c420f2b75fd3fe2b8aee5881220639bc9a4add17b2127b6e855 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Quality control and filtration for illumina sequencing data A toolkit including statistics tool for illumina high-throughput sequencing data, and filtration tools for sequence quality, length, tail quality, etc.. License: unknown Vendor: Institut Pasteur Package: gensoft-htseq-0.11.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 158127 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-htseq-0.11.2_1.0_amd64.deb Size: 50724090 MD5sum: 444dbc2c55d5555d173cd94571d62f9a SHA1: 799ba35b8a9502df1458673a2432a3699ed62413 SHA256: edc6b90738007d8ad79a420bca87a59e327a9052704d2b3f804560dbbe50c3c1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: high-throughput sequencing assays processing License: unknown Vendor: Institut Pasteur Package: gensoft-htslib-1.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 25079 Depends: libbz2-1.0, zlib1g, gensoft-xz-5.2.4, libssl1.1, gensoft-curl-7.68.0, libc6 Filename: pool/main/gensoft-htslib-1.10_1.0_amd64.deb Size: 7926486 MD5sum: 9a30b1d5b0b0fc1e9d63cc464c5d6398 SHA1: 68aa5d628f275208a2d83c6cf1de78e1b27e4368 SHA256: 616bf1f5787f3d2b2d4f9c4a4b4456becb362ce1c27f899a9e9ab9dbf38c8774 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a C library for high-throughput sequencing data formats. 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License: unknown Vendor: Institut Pasteur Package: gensoft-igv-2.11.6 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 85679 Depends: gensoft-graalvm-ce-java11-20.0.0 Filename: pool/main/gensoft-igv-2.11.6_1.0_amd64.deb Size: 56691128 MD5sum: ff12870fb045e97717bbdd71003d34fe SHA1: d96131477a06767a77e32194ff639acd30d41586 SHA256: 3972c48e3ae5f4aec5a63bfc98f38bc122173da2efc6ca60ab29eb8929eddb18 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. License: unknown Vendor: Institut Pasteur Package: gensoft-igv-2.11.9 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 83636 Depends: gensoft-graalvm-ce-java11-20.0.0 Filename: pool/main/gensoft-igv-2.11.9_3.0_amd64.deb Size: 54829374 MD5sum: fb934d557b108597bcf6c3ddae023711 SHA1: 4b56ca1df26f3fd8debb339837219d2dc9f03c2a SHA256: 6f58c098ccbe9dede5366b51d38d422d842adca97262b0f7029ee843f7eb5b17 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. License: unknown Vendor: Institut Pasteur Package: gensoft-igv-2.8.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 81662 Depends: gensoft-graalvm-ce-java11-20.0.0 Filename: pool/main/gensoft-igv-2.8.2_1.0_amd64.deb Size: 54548524 MD5sum: 9b067dbbd6810e3db384a36c3d52e717 SHA1: c8a8315884d8a46887b89e65a32340ce2ae2f4b2 SHA256: 689ef8a1607f5a845975ade80634b78e1c3a931cd2e982038b5169f5ebba0417 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. License: unknown Vendor: Institut Pasteur Package: gensoft-igv-2.9.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 82700 Depends: gensoft-graalvm-ce-java11-20.0.0 Filename: pool/main/gensoft-igv-2.9.0_1.0_amd64.deb Size: 55466078 MD5sum: 081bb0f105da4e4f0f5e34a36cfee89b SHA1: 683798cd3c7606e28d2f79e288e8a6153a96617e SHA256: e4e3bbdc7f94e4a9ae43b99838239832d0a5ca447ee10b3f5b0ae6787825acf5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. License: unknown Vendor: Institut Pasteur Package: gensoft-imagemagick-6.9.10-91 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 42308 Depends: gensoft-pkg-config-0.29.2, gensoft-libpng-1.6.37, gensoft-xz-5.2.4, gensoft-libtool-2.4.6, gensoft-freetype-2.10.1, gensoft-expat-2.2.9, libc6, gensoft-libxml2-2.9.10, gensoft-libwebp-1.1.0, gensoft-openjpeg-2.3.1, gensoft-ghostscript-9.50, gensoft-graphviz-2.42.3, zlib1g, gensoft-fftw-3.3.8, gensoft-gcc-9.2.0, libbz2-1.0, gensoft-lcms2-2.9, gensoft-xorg-libs-1.1, gensoft-libiconv-1.16, gensoft-fontconfig-2.13.91, gensoft-libjpeg-turbo-2.0.4, gensoft-libtiff-4.1.0 Filename: pool/main/gensoft-imagemagick-6.9.10-91_1.0_amd64.deb Size: 16253396 MD5sum: 9550a67c599b852c37f4ac5842786225 SHA1: 0752ac6c603d03d5721d861b4aef2e39b7292f54 SHA256: 60921d453a82d5d2fa972642840e7166fb618c8ac927f4e34e85132bf1561abd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Use ImageMagick to create, edit, compose, or convert bitmap images. It can read and write images in a variety of formats (over 200) including PNG, JPEG, JPEG-2000, GIF, TIFF, DPX, EXR, WebP, Postscript, PDF, and SVG. Use ImageMagick to resize, flip, mirror, rotate, distort, shear and transform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bezier curves. License: unknown Vendor: Institut Pasteur Package: gensoft-imod-4.11.25 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 810880 Depends: gensoft-apptainer-1.3.2 Filename: pool/main/gensoft-imod-4.11.25_1.0_amd64.deb Size: 826074710 MD5sum: 8207520a52383ea3dde6281379cc2d78 SHA1: 5e5ac97737c8dcd7203b078bc47c03c8407a816a SHA256: dcd059dc474f7e91cb4067ba77f791bd097d57dfcb80d109555522a682b55e0a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections License: unknown Vendor: Institut Pasteur Package: gensoft-imp-2.13.0 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 767009 Depends: gensoft-adm-python-3.8.1, gensoft-gcc-9.2.0, gensoft-xz-5.2.5, gensoft-ann-1.1.2, libgcc-s1, gensoft-boost-1.72.0, gensoft-gperftools-2.7, gensoft-gmp-6.2.0, libstdc++6, gensoft-openmpi-4.0.5, gensoft-icu-65.1, gensoft-protobuf-3.11.3, libbz2-1.0, gensoft-hdf5-1.10.6, gensoft-libunwind-1.3.1, gensoft-zstd-1.4.4, gensoft-mpfr-4.0.2, libc6, zlib1g, gensoft-fftw-3.3.8, gensoft-gsl-2.6 Filename: pool/main/gensoft-imp-2.13.0_3.0_amd64.deb Size: 187679492 MD5sum: 9898651e3e32604d38bf2ebba41d781d SHA1: 78108794e900d3f919ccb9ad3fc2e4cc912af4f1 SHA256: 2afe5e0b0af69c6da26861ebd57575777ee45ee764ed601919a126ecc83ebb94 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a comprehensive structural characterization of biomolecules ranging in size and complexity from small peptides to large macromolecular assemblies License: unknown Vendor: Institut Pasteur Package: gensoft-infernal-1.1.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 25471 Depends: gensoft-openmpi-4.0.5, libc6 Filename: pool/main/gensoft-infernal-1.1.3_2.0_amd64.deb Size: 12404116 MD5sum: c6f1225c5f831c82f28f944e722b998d SHA1: 5bb3fec93bd206c22e08b28a5cc30d024444146b SHA256: d8ddd53a14caaa7c9680277d0f8e64560862f164b6322709e0d38ba6dc32d5cf Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Inference of RNA secondary structure alignments covariance models (CMs) License: unknown Vendor: Institut Pasteur Package: gensoft-infernal-1.1.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 25469 Depends: gensoft-openmpi-4.0.5, libc6 Filename: pool/main/gensoft-infernal-1.1.4_2.0_amd64.deb Size: 12404972 MD5sum: 5c3b32145a2effd33bc575f9df66b584 SHA1: d3c7d81ccc09c477c33aa692fa3cfc9c1d2bc52c SHA256: 61efffe89046f37d4e5a2dfdb3f6d9b21af4a943ffda469ac9f5b0af8d063ef5 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Inference of RNA secondary structure alignments covariance models (CMs) License: unknown Vendor: Institut Pasteur Package: gensoft-infernal-1.1.5 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 26066 Depends: gensoft-openmpi-4.0.5, libc6 Filename: pool/main/gensoft-infernal-1.1.5_2.0_amd64.deb Size: 12682220 MD5sum: 31ac8f1c2f67635bef9f2ab0e302e277 SHA1: e93cdfbea87afa326524fcd75fa1f91d95cd4c7e SHA256: 192f136f15529ab22e83d76f8da7b5c1a0dd11fa0102e4edc6258c953793f965 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Inference of RNA secondary structure alignments covariance models (CMs) License: unknown Vendor: Institut Pasteur Package: gensoft-info2man-1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 66 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-info2man-1.1_1.0_amd64.deb Size: 23824 MD5sum: 0b55a872de01d61bd793bc66d33a6547 SHA1: ce57e9d2517750774911c596c11755439f932953 SHA256: 0d8a36e988e1191631e1f26da78751b4de7990dd08821eb7fe0f32aaff149214 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: info to man converter License: unknown Vendor: Institut Pasteur Package: gensoft-integron-finder-1.5.1 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 197569 Depends: gensoft-infernal-1.1.3, gensoft-prodigal-2.6.3.pp1, libgcc-s1, libstdc++6, gensoft-adm-python-2.7.17, gensoft-hmmer-3.2.1, libc6 Filename: pool/main/gensoft-integron-finder-1.5.1_3.0_amd64.deb Size: 59875974 MD5sum: bedda4b0006bf45c77905694b1eece6e SHA1: 40a47479bab543bb6675b522a4d8492112943321 SHA256: 6a9021ab3fed00213256be7bd5595ee2d877a09ca2c7299765337fec2b424380 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Integron Finder aims at detecting integrons in DNA sequences by finding particular features of the integron the attC sites, the integrase and when possible attI site and promoters. It provides a full pipeline from a fasta file to a gene bank file with the annotation of the element and its component. License: unknown Vendor: Institut Pasteur Package: gensoft-integron-finder-2.0.1 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 230110 Depends: libgcc-s1, libstdc++, zlib1g, gensoft-hmmer-3.2.1, gensoft-infernal-1.1.3, libc6, gensoft-adm-python-3.8.1, gensoft-prodigal-2.6.3.pp1 Filename: pool/main/gensoft-integron-finder-2.0.1_3.0_amd64.deb Size: 75027386 MD5sum: 909e437f16b1fce70fb99f55e169bde0 SHA1: fb457e911658e5f9f8727d0f8f47b89a05c98c98 SHA256: 077b3397acf3b959cf659ffb77f8146af3af600c0d3737581cb09cd1f6cd09ab Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Integron Finder aims at detecting integrons in DNA sequences by finding particular features of the integron the attC sites, the integrase and when possible attI site and promoters. It provides a full pipeline from a fasta file to a gene bank file with the annotation of the element and its component. License: unknown Vendor: Institut Pasteur Package: gensoft-integron-finder-2.0.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 230138 Depends: gensoft-prodigal-2.6.3.pp1, gensoft-adm-python-3.8.1, libstdc++, libc6, gensoft-infernal-1.1.3, zlib1g, libgcc-s1, gensoft-hmmer-3.3.1 Filename: pool/main/gensoft-integron-finder-2.0.2_2.0_amd64.deb Size: 75035310 MD5sum: 5379edf3308e263b869f1b6c781ba271 SHA1: 0003b94c05e10ae1b3453625f017b25445ae4902 SHA256: 704e9bb3be158e67ef33c34723fdd9e24ab2f76eb878dd0281d0d10d25afb12b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Integron Finder aims at detecting integrons in DNA sequences by finding particular features of the integron the attC sites, the integrase and when possible attI site and promoters. It provides a full pipeline from a fasta file to a gene bank file with the annotation of the element and its component. License: unknown Vendor: Institut Pasteur Package: gensoft-integron-finder-2.0.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 333657 Depends: gensoft-hmmer-3.3.1, gensoft-prodigal-2.6.3.pp1, gensoft-infernal-1.1.3, libgcc-s1, libc6, zlib1g, gensoft-adm-python-3.10.7, libstdc++ Filename: pool/main/gensoft-integron-finder-2.0.3_2.0_amd64.deb Size: 82711512 MD5sum: b89770030a5c6fb0fe2d7912362e34db SHA1: e4c192c3db2e15493c3ca198d73bea5d4910cecb SHA256: f25d9415ec92a13013bb5ff6c41e5e822fd59c79c03112b9dba1668fb845d127 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Integron Finder aims at detecting integrons in DNA sequences by finding particular features of the integron the attC sites, the integrase and when possible attI site and promoters. It provides a full pipeline from a fasta file to a gene bank file with the annotation of the element and its component. License: unknown Vendor: Institut Pasteur Package: gensoft-integron-finder-2.0.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 333651 Depends: libstdc++, gensoft-infernal-1.1.3, libgcc-s1, gensoft-adm-python-3.10.7, gensoft-hmmer-3.3.1, zlib1g, gensoft-prodigal-2.6.3.pp1, libc6 Filename: pool/main/gensoft-integron-finder-2.0.5_1.0_amd64.deb Size: 82709124 MD5sum: 81292cbc0733d4720f2b169609d8ba94 SHA1: f154c012a001ccc27102ac80b3d6da1a65c11025 SHA256: 803ad0e2f3dd292a020b786820c8618bf41baf7e81ea1c741bc953012fad6044 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Integron Finder aims at detecting integrons in DNA sequences by finding particular features of the integron the attC sites, the integrase and when possible attI site and promoters. It provides a full pipeline from a fasta file to a gene bank file with the annotation of the element and its component. License: unknown Vendor: Institut Pasteur Package: gensoft-interproscan-5.75-106.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 304057 Depends: gensoft-adm-perl-5.30.1, gensoft-phobius-1.01, libgomp1, gensoft-signalp-4.1, libbz2-1.0, gensoft-tmhmm-2.0c, libpcre2-8-0, gensoft-adm-python-3.12.8, libstdc++6, gensoft-graalvm-ce-java11-22.3.1, libc6, libgcc-s1, zlib1g Filename: pool/main/gensoft-interproscan-5.75-106.0_1.0_amd64.deb Size: 135977040 MD5sum: 594830ec5408e57c3c9af020680c7dd4 SHA1: aad6b4ad2cdefaded09184d68809b45a17efba5f SHA256: bc655e72b8427807089a6de50d9326350b951ede39ea5f9bd0f6b8672c5d0754 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Signature Recognition Search Against the Integrated Resource of Protein Domains and Functional Sites License: unknown Vendor: Institut Pasteur Package: gensoft-intltool-0.51.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 577 Depends: libc6, gensoft-expat-2.2.9, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-intltool-0.51.0_1.0_amd64.deb Size: 241460 MD5sum: 19e14cb6c6514b142b939b0e0fbba865 SHA1: 6f4ae79d30ce97c84c17513cf8acc8162c694603 SHA256: d9735908e55530f1cf2b5f872489aa66e364a0067431a07d22b412bdb39b6f93 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Utility scripts for internationalizing XML License: unknown Vendor: Institut Pasteur Package: gensoft-ior-3.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 373 Depends: gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-ior-3.0.1_1.0_amd64.deb Size: 139552 MD5sum: 8bf07d72352b6c4602fc20ccf8c0bb4d SHA1: 03e81920835e2ed9f1487361a88d98d9beab054c SHA256: e6ff38bf7c745f10cffbc8aefbc95dfaf228241c7bfe75a4e6d7a2e4b513fd5c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: IOR is designed to measure parallel I/O performance at both the POSIX and MPI-IO level. License: unknown Vendor: Institut Pasteur Package: gensoft-iphop-1.3.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2271328 Depends: gensoft-libxml2-2.9.10, gensoft-diamond-2.1.9, libc6, libgcc-s1, zlib1g, gensoft-libiconv-1.16, gensoft-gcc-9.2.0, gensoft-blast+-2.16.0, gensoft-rafah-0.3, libstdc++6, gensoft-expat-2.4.1, gensoft-adm-perl-5.30.1, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-iphop-1.3.3_1.0_amd64.deb Size: 1161734592 MD5sum: 23f405a12dc580f6f193b08e83bbd8ce SHA1: 1be19d62215a83828a6c47e81e6295755e318580 SHA256: 58dcfd697790854fedf24bc07f4fd3994e0f39bf551e1dbbb1ca763b036cf59e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: iPHoP (integrated Phage Host Prediction) is an automated command-line pipeline for predicting host genus of novel bacteriophages and archaeoviruses based on their genome sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-iq-tree-1.6.12 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 14220 Depends: gensoft-openmpi-4.0.5, zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-iq-tree-1.6.12_3.0_amd64.deb Size: 5518496 MD5sum: dd9aa91a827e80d2cb71b005d214776a SHA1: 6a993cdd1dbbec676969a3fab74a864d2792dace SHA256: e353a21e09449256c0b9f5e8775f97291d7d00cb8357adf915e3b36564f50489 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. An ultrafast bootstrap approximation to assess branch supports. Ultrafast and automatic model selection. License: unknown Vendor: Institut Pasteur Package: gensoft-iq-tree-2.0.6 Version: 4.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 17386 Depends: libc6, zlib1g, gensoft-gcc-9.2.0, gensoft-openmpi-4.0.5 Filename: pool/main/gensoft-iq-tree-2.0.6_4.0_amd64.deb Size: 6615418 MD5sum: d0fa63c680a79d35eeace1be41ae4dba SHA1: 2f1e2941534e7a9b1dca1dc49eeefdf9e6c15c23 SHA256: 122a670e318f70bc5e287474e24c7535a3769262347f771c7eadd617d6b7753e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. An ultrafast bootstrap approximation to assess branch supports. Ultrafast and automatic model selection. License: unknown Vendor: Institut Pasteur Package: gensoft-iq-tree-2.2.2.2 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 20488 Depends: libc6, zlib1g, gensoft-gcc-9.2.0, gensoft-openmpi-4.0.5 Filename: pool/main/gensoft-iq-tree-2.2.2.2_3.0_amd64.deb Size: 7834056 MD5sum: 7763d3853f6f635192aafd4932cbd8b8 SHA1: b72243f20eec57ea679668c55bad7d6dab6f8339 SHA256: 7da827bfb3479b5c363a7afb58ed0a7afe8f616986005e535c08bac7333d9c54 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. An ultrafast bootstrap approximation to assess branch supports. Ultrafast and automatic model selection. License: unknown Vendor: Institut Pasteur Package: gensoft-iq-tree-2.3.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 21038 Depends: gensoft-openmpi-4.0.5, libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-iq-tree-2.3.2_1.0_amd64.deb Size: 8101226 MD5sum: e48db94fc2be4aa410a8ebc312c7fc1d SHA1: 3c3ba98bf03542bc8af17b0e04aa068e9f93ad30 SHA256: 951032547b9c2e5ac47de2e66f02062a35e07bcb44bbdb6dda70140099c8a3f3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. An ultrafast bootstrap approximation to assess branch supports. Ultrafast and automatic model selection. License: unknown Vendor: Institut Pasteur Package: gensoft-iq-tree-2.3.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 21518 Depends: libc6, gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-iq-tree-2.3.4_1.0_amd64.deb Size: 8231658 MD5sum: ef95ea8b2ec9b74b93136a6f51c4e261 SHA1: fa84c3b812f5b820a4a4cd6c67163dcdc6ba0fb6 SHA256: e8ff65f5b409071555312ac92cb6141a7e360fbb8e03896292e26a3aaa6f23e4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. An ultrafast bootstrap approximation to assess branch supports. Ultrafast and automatic model selection. License: unknown Vendor: Institut Pasteur Package: gensoft-iq-tree-2.3.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 22730 Depends: zlib1g, gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-iq-tree-2.3.6_1.0_amd64.deb Size: 8750804 MD5sum: 990625c7d99474b8ac96f7890e2e4e30 SHA1: 282d69c9b761339c22b5df31f9c5e8d0043a089e SHA256: 2cc94b7a50ccc284236deaf6e86f3fda47427e657fa0810c4e0b4d1d3a21ca4c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. An ultrafast bootstrap approximation to assess branch supports. Ultrafast and automatic model selection. License: unknown Vendor: Institut Pasteur Package: gensoft-iq-tree-2.4.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 22886 Depends: gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-iq-tree-2.4.0_1.0_amd64.deb Size: 8806352 MD5sum: 4c93683949f605c5a1951610bc1e4638 SHA1: 9dd6f9e9a9d67b621fa557f513c9aaa69e9122f0 SHA256: 58e931a2776cec3503bb5ad36b30f794bffff315f6084a5da0a6730a2042e15c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. An ultrafast bootstrap approximation to assess branch supports. Ultrafast and automatic model selection. License: unknown Vendor: Institut Pasteur Package: gensoft-is-mapper-2.0.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 95136 Depends: gensoft-blast+-2.10.0, gensoft-adm-python-3.8.1, gensoft-samtools-1.10, gensoft-samblaster-v.0.1.24, gensoft-bedtools-2.29.2, gensoft-bwa-0.7.17 Filename: pool/main/gensoft-is-mapper-2.0.1_2.0_amd64.deb Size: 27676182 MD5sum: c017f8c633d2a968ef89b3d9cd897d1b SHA1: 90a706a2e73719c02611d599f121b2dbf5125ce2 SHA256: e0964188606335ea249d73765dae1a417126449252c6bffef863ed6bd49aab28 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: This program takes paired end Illumina short read sequence data, an IS query of interest and a reference genome or assembly and reports the locations of the IS query in the reference genome or the assembly. License: unknown Vendor: Institut Pasteur Package: gensoft-isa-l-2.31.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2931 Depends: libc6 Filename: pool/main/gensoft-isa-l-2.31.0_1.0_amd64.deb Size: 780058 MD5sum: f4e4d052a6bef4d77a22821bea41975e SHA1: 6d9e55771d5364855ecdb533ea5011cc6906abbf SHA256: a8af693e963fceaab618b15174ed9b444304c82ad702f125cf86f6646c6cad2c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: ISA-L is a collection of optimized low-level functions targeting storage applications License: unknown Vendor: Institut Pasteur Package: gensoft-isescan-1.7.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 205622 Depends: gensoft-hmmer-3.3, gensoft-blast+-2.10.0, gensoft-fraggenescan-1.31, gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-isescan-1.7.1_1.0_amd64.deb Size: 58979044 MD5sum: bcf411688d84ba47e7692d9ba28e5380 SHA1: ead45c6a14918a21552a913dd21f2811227154a4 SHA256: 0a57bc9ef9e0e062db2f855b137439eb0ad2be1638e8d71f881bf58b0dfb09b8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome License: unknown Vendor: Institut Pasteur Package: gensoft-isescan-1.7.2.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 235191 Depends: gensoft-adm-python-3.8.1, libc6, gensoft-blast+-2.10.0, gensoft-fraggenescan-1.30, gensoft-hmmer-3.3 Filename: pool/main/gensoft-isescan-1.7.2.3_2.0_amd64.deb Size: 67291094 MD5sum: 912c228b41fe40e39318a66df11dd063 SHA1: baa93af1f9dfa37dfb120c5ebda7edb750d1cc58 SHA256: 431233efff80e3c47925875ef245d57efcb5cdbddb024b2f56be43314480f585 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome License: unknown Vendor: Institut Pasteur Package: gensoft-isonet-0.2.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2009907 Depends: gensoft-adm-python-3.8.1, libc6, gensoft-cudnn-11.1-v8.1.0.77, gensoft-cuda-11.1 Filename: pool/main/gensoft-isonet-0.2.1_1.0_amd64.deb Size: 810719372 MD5sum: 454ab1574fc933a6bba8a16a5e2fdb59 SHA1: d88c9fb4f1730c72dd6d9df90ba2e91bc3098638 SHA256: f5000069396cea354f16baaa464ee4779e4ab6a4f25afdb8ce6e666ad7a13c03 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Isotropic Reconstruction of Electron Tomograms with Deep Learning License: unknown Vendor: Institut Pasteur Package: gensoft-isoquant-3.6.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 480948 Depends: libstdc++6, libc6, gensoft-adm-python-3.8.1, libgcc-s1, gensoft-minimap2-2.28, gensoft-samtools-1.21, zlib1g Filename: pool/main/gensoft-isoquant-3.6.1_1.0_amd64.deb Size: 151735010 MD5sum: 4dbc6474d98377577f3a1276f80fb4a7 SHA1: 1f56b397ec345b2d9a3f5e0c9839fe244812c573 SHA256: 21d945b95ee16ee8cc58054ba4053eb7d6ae62d7a254267a96a216260a94cad8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: IsoQuant is a tool for the genome-based analysis of long RNA reads, such as PacBio or Oxford Nanopores. License: unknown Vendor: Institut Pasteur Package: gensoft-itsx-1.1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 40318 Depends: gensoft-hmmer-3.3, libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-itsx-1.1.2_1.0_amd64.deb Size: 4946830 MD5sum: ef83bc66f60231229b3af9c55b45316f SHA1: 5c9e629e5c016ea55891192e7aa4b058488b232e SHA256: ae7f4de19e144f74fdaccce0e386a7e08ebf369154d190a4f3d35ec32989faa2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing License: unknown Vendor: Institut Pasteur Package: gensoft-iva-1.0.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 60695 Depends: libc6, gensoft-mummer-3.23, gensoft-samtools-0.1.19, gensoft-kmc-3.1.1, gensoft-adm-python-3.8.1, gensoft-r-3.6.2, gensoft-smalt-0.7.6 Filename: pool/main/gensoft-iva-1.0.9_1.0_amd64.deb Size: 23167920 MD5sum: cbf21674185529e801cda7b8e77be34e SHA1: afffaadadc3a5b52c63fda6abaaadadcc2ade36e SHA256: e296abff1a3aef2b420f0c7aee26be4c22e83f6db3e2ab9be8b6b4d52ec162d0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: IVA (Iterative Virus Assembler) is a _de novo_ assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high and variable depth. License: unknown Vendor: Institut Pasteur Package: gensoft-ivar-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1951 Depends: gensoft-gcc-9.2.0, gensoft-curl-7.68.0, zlib1g, gensoft-htslib-1.10, libc6, gensoft-xz-5.2.4, libbz2-1.0, mawk, libssl1.1 Filename: pool/main/gensoft-ivar-1.0.1_1.0_amd64.deb Size: 527534 MD5sum: 7218dd05b184a7337395863d0cc2db4c SHA1: b40b08a74625b2b6e12ac62c02cd4a4e0e4377d2 SHA256: c3dd5b64898c4c29ae35f3081c4e9e82ebdd3e2fd2728b0988860056d0263ef8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. License: unknown Vendor: Institut Pasteur Package: gensoft-ivar-1.4.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4160 Depends: gensoft-gcc-9.2.0, zlib1g, libbz2-1.0, gensoft-curl-7.68.0, gensoft-htslib-1.10, mawk, gensoft-xz-5.2.5, libssl1.1, libc6 Filename: pool/main/gensoft-ivar-1.4.4_1.0_amd64.deb Size: 1130800 MD5sum: be94be57aa0e91e30782444ee057e69e SHA1: 35399aa11977b76b7614dd7063739ac81aa8d159 SHA256: e0c4d8138e6f230f63a1ecf369b8eee9730f4066791439e630b943b45c88a2c8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. License: unknown Vendor: Institut Pasteur Package: gensoft-jags-4.3.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 47005 Depends: libc6, gensoft-gcc-9.2.0, gensoft-atlas-3.10.2 Filename: pool/main/gensoft-jags-4.3.0_2.0_amd64.deb Size: 15257984 MD5sum: bb0d14e61a75b8004225a65be685bac4 SHA1: 7612f922631cd0fbd6deb6f4c1e9f48ba8c8fdd0 SHA256: 7b54efb76d77ea97c0b3bd76d2ef4ba33f053aab4334d53524033c04f5434131 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: jags is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. License: unknown Vendor: Institut Pasteur Package: gensoft-jansson-2.14 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1964 Depends: libc6 Filename: pool/main/gensoft-jansson-2.14_1.0_amd64.deb Size: 525174 MD5sum: 61173db8dbe61fdfc58c0f19a1d28d05 SHA1: 6225c18a247cd5f061663dcf55aeb4e5d09e9e35 SHA256: a84dd0b84785bd9b89c8b80e672e871d594b407b3f21e662d11a98441a2eb75c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: C library for encoding, decoding and manipulating JSON data License: unknown Vendor: Institut Pasteur Package: gensoft-jasper-2.0.23 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4272 Depends: gensoft-xorg-libs-1.1, gensoft-libjpeg-turbo-2.0.4, gensoft-gcc-9.2.0, gensoft-freeglut-3.2.1, gensoft-mesa-19.0.8, libc6, gensoft-glu-9.0.1, gensoft-libdrm-2.4.100, zlib1g, gensoft-expat-2.2.9 Filename: pool/main/gensoft-jasper-2.0.23_1.0_amd64.deb Size: 991816 MD5sum: 7e3c171cba4b52856f79c5651dcb23a1 SHA1: e2ca23c9bd16734e86661a417678ec91bc96148f SHA256: 856709aa74a02e506177f3f1b51a6806657708e2d46a4c9a3db9e4e2a69b1d17 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: JasPer is a software toolkit for the handling of image data. The software provides a means for representing images, and facilitates the manipulation of image data, as well as the import/export of such data in numerous formats (e.g., JPEG-2000 JP2, JPEG, PNM, BMP, Sun Rasterfile, and PGX). License: unknown Vendor: Institut Pasteur Package: gensoft-java-1.7.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 285590 Depends: liblzma5, libselinux1, libffi7, libglib2.0-0, libstdc++6, libgcc1, libpcre3, libicu66, libxml2, zlib1g, libc6 Filename: pool/main/gensoft-java-1.7.0_2.0_amd64.deb Size: 142368820 MD5sum: c7ceab2e6cae221a0bc04472b330a0aa SHA1: 41cdf5f252b95a2b5623495e5a8e502b366b3c6f SHA256: ad55a4a39d6afc0be0a8f8e0dccebf8e134714cebd0783c85d78049263d89193 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: JAVA (oracle) programing JDK License: unknown Vendor: Institut Pasteur Package: gensoft-java-13.0.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 315407 Depends: liblzma5, libicu66, libxdmcp6, libc6, libxau6, libffi7, libselinux1, libpcre3, libgcc1, libxcb1, libxext6, libglib2.0-0, libstdc++6, libx11-6, libxml2, zlib1g Filename: pool/main/gensoft-java-13.0.2_2.0_amd64.deb Size: 188135978 MD5sum: 43e8ed4332102a2b17ff9cf37eef6fc6 SHA1: ccd68dd8ba26b6bf9ce6e5f04ce653c9b999d746 SHA256: 2aa654ff7d347a13c54f97559282a44f630735a25b94538d4f9bf98399fd9559 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: JAVA (oracle) programing JDK License: unknown Vendor: Institut Pasteur Package: gensoft-jbigkit-2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 271 Depends: libc6 Filename: pool/main/gensoft-jbigkit-2.1_1.0_amd64.deb Size: 90154 MD5sum: 39b7548e337b3788d9300671a46809b3 SHA1: 74ffe229e79c3de86c84f0b5672d8d9969cb2130 SHA256: 56d7cbc07a1f95113cf5041d5f3d65d5f1c163a340074232c04bc5710d4fac42 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents. License: unknown Vendor: Institut Pasteur Package: gensoft-jclusterfunk-0.0.25 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 787 Depends: gensoft-graalvm-ce-java23-23.0.1 Filename: pool/main/gensoft-jclusterfunk-0.0.25_1.0_amd64.deb Size: 745362 MD5sum: c989231be5f846bd9afb7fb3d701af95 SHA1: 699cc0455fe7a5734abda7cc72897d261f724477 SHA256: 7426f7dbece1f28e3a531732879843cc0fbce9414ff74baabf7b35cf00ece0ad Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: miscellanous tree functions License: unknown Vendor: Institut Pasteur Package: gensoft-jellyfish-1.1.12 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 9990 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-jellyfish-1.1.12_2.0_amd64.deb Size: 2969904 MD5sum: 9741dc4f774a50133a7a139af53c2f82 SHA1: 54b50481f39d4f0cce43c7aa8731665ca291ad42 SHA256: 7203cddfa6c15bb06ae6a34b6bd1a882863a2801644e00325762ac7496a5d9dd Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Fast, Parallel k-mer Counting for DNA License: unknown Vendor: Institut Pasteur Package: gensoft-jellyfish-2.3.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 14061 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-jellyfish-2.3.0_2.0_amd64.deb Size: 3823802 MD5sum: fd26b65a4773bf488f732cb39f51abfd SHA1: 3c3184ef384192ecf460399301cdf892418ac49c SHA256: 473a5e6f05214a416e48244264cc72cfe923237a68239ce3270cff9371d75005 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Fast, Parallel k-mer Counting for DNA License: unknown Vendor: Institut Pasteur Package: gensoft-jemalloc-5.2.1 Version: 2.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 59811 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-jemalloc-5.2.1_2.0_amd64.deb Size: 14123360 MD5sum: 15e9ccf7bc9e64e9a4e094d2bfa3cb55 SHA1: 345dfef05c8a8bb9680b7ab3d68dd09dec62babb SHA256: 38274963e0a6dc3ff70d0f6bc5e8e96a625180234d15e21dbca4ecb16b284ded Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a general purpose malloc implementation that emphasizes fragmentation avoidance and scalable concurrency support License: unknown Vendor: Institut Pasteur Package: gensoft-jitterbug-b6b3f9c Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 817323 Depends: gensoft-bedtools-2.29.2, libbz2-1.0, zlib1g, gensoft-samtools-1.10, libc6, libssl1.1, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-jitterbug-b6b3f9c_1.0_amd64.deb Size: 158770074 MD5sum: 4dd272f0a831f2aeb1616de038c18e20 SHA1: 0c31fe3c46d833a38c092cf9edddedbc794cc2b0 SHA256: 79d83b3a50038f4cd044c09eecf3714e8f7a969dfa3bfa7036c0c7991f174488 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference. License: unknown Vendor: Institut Pasteur Package: gensoft-jmodeltest2-2.1.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5746 Depends: libc6, gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-jmodeltest2-2.1.10_1.0_amd64.deb Size: 4889800 MD5sum: 57e31d4be59b925574c9d5be6d7e8dbb SHA1: 7c43da672db1ded46ef7b23131dba51fb4fd7be6 SHA256: c2e7a145afce9b452ee97efe47f4565ae6dd9ca9348188bacd832fb04cbf9189 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool to carry out statistical selection of best-fit models of nucleotide substitution. License: unknown Vendor: Institut Pasteur Package: gensoft-joinx-1.12.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2972 Depends: gensoft-gcc-8.4.0, libc6 Filename: pool/main/gensoft-joinx-1.12.0_1.0_amd64.deb Size: 1075946 MD5sum: 70c6511fe2562e8275d76d882ee00889 SHA1: ac933d1d8ade31d627a1b18119210fe56a7112a1 SHA256: ab7050563f0a721195b619736314f6cf9376631ca899365768e58ebe39e0139d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Joinx is a lightweight tool for performing operations (e.g., intersection, difference, on genomic data contained in vcf and .bed files. It also provides some limited analysis functions (concordance reports). An important assumption that joinx makes is that the input data is always sorted. This allows it to compute its results in an efficient manner. License: unknown Vendor: Institut Pasteur Package: gensoft-json-c-0.18 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 674 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-json-c-0.18_1.0_amd64.deb Size: 201964 MD5sum: fa6bbcd99352f290e3a27a6ec255e974 SHA1: 68d35370b8bc8e21f307a3acca55b96eb04739a8 SHA256: c0474cc98614a78248d28c9611f8b0c6020297f196c8d736caabd9ab0df3aaf5 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects. It aims to conform to RFC 8259. License: unknown Vendor: Institut Pasteur Package: gensoft-jsoncpp-1.9.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 364 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-jsoncpp-1.9.2_1.0_amd64.deb Size: 125170 MD5sum: 9c114cfa7efd21384ccbb6d8a0670ca5 SHA1: 193a3085afbc2ae39d70ea091ecb1cbb1299d1a8 SHA256: cb2be2895f62206b213550a64581dc493f6d3de55b6221244d02831057e9ee1c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files. License: unknown Vendor: Institut Pasteur Package: gensoft-jspecies-1.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4992 Depends: gensoft-blast-2.2.26, gensoft-graalvm-ce-java8-20.0.0, gensoft-mummer-3.23 Filename: pool/main/gensoft-jspecies-1.2.1_1.0_amd64.deb Size: 4613696 MD5sum: cf4af4457ce0c66d8d5b844205f9f972 SHA1: 33db67bc0024429daf3c0efdb0081a2fd2545d8d SHA256: 00a7e9a62b0ea3766dc475c96bffc2daf6b407d7afacd404f47c851e57df112e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: JSpecies is an easy to use, biologist-centric software designed to measure the probability if two genomes belonging to the same species or not. License: unknown Vendor: Institut Pasteur Package: gensoft-juicer-1.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 36122 Depends: gensoft-graalvm-ce-java23-23.0.1, gensoft-cuda-10.2, libc6, zlib1g, gensoft-bwa-0.7.18, gensoft-gawk-5.0.1, gensoft-samtools-1.21, libbz2-1.0 Filename: pool/main/gensoft-juicer-1.6_1.0_amd64.deb Size: 33259756 MD5sum: 2c533374e92479dcf06406df76789839 SHA1: 56b2f36c68a934ade5b440d1a01bc78dd92a53f3 SHA256: 325436ee86c9b718c4e02f6a589f706c39d4754cbbaf572a16c206cf65cac24e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A One-Click System for Analyzing Loop-Resolution Hi-C Experiments License: unknown Vendor: Institut Pasteur Package: gensoft-julia-0.6.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 232872 Depends: libc6, zlib1g Filename: pool/main/gensoft-julia-0.6.2_2.0_amd64.deb Size: 67951272 MD5sum: 538f7245247ab6b5618df3eb7942b3b9 SHA1: 41f0f921b409a10d477e34224770d3032fc37592 SHA256: 2b4d30fa7766a0a454f0f608835a2d3136219e9c87471993a96a5f82258848c0 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: high-level, high-performance dynamic programming language for numerical computing. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library. License: unknown Vendor: Institut Pasteur Package: gensoft-julia-1.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 301634 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-julia-1.1.1_1.0_amd64.deb Size: 83903560 MD5sum: 6d6ddb1d68c83cc7d42969d2cfc8dc9c SHA1: e1a4344bf8f892a76726b71a67d6d0a5979b3bb8 SHA256: e59a8120c1af74d0b2994e78e9c49878f6a4e0eaf8592b97f193da8d2517b9f5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: high-level, high-performance dynamic programming language for numerical computing. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library. License: unknown Vendor: Institut Pasteur Package: gensoft-julia-1.4.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 334005 Depends: zlib1g, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-julia-1.4.1_2.0_amd64.deb Size: 92703792 MD5sum: 2c07aba9e16dd5e09b87623c0041d913 SHA1: 0ba10c92d36215748a5cefdd0a1e6bd93c7ba4f0 SHA256: 92a7c39c39518691b69b1117d0546d66f16a05aa37aaf7ef979a1ac11f54795b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: high-level, high-performance dynamic programming language for numerical computing. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library. License: unknown Vendor: Institut Pasteur Package: gensoft-julia-1.5.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 372340 Depends: libstdc++6, libc6, libgcc-s1 Filename: pool/main/gensoft-julia-1.5.4_2.0_amd64.deb Size: 105398656 MD5sum: 3bc1d31e163a30c69c712a8539f0456e SHA1: a6d94121f3d7fec580a7916ce860f9dae2ffa031 SHA256: 6972902b632c83d4d375bd11de7b7f502e63d3a91c357fa3771201628d6ab020 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: high-level, high-performance dynamic programming language for numerical computing. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library. License: unknown Vendor: Institut Pasteur Package: gensoft-julia-1.6.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 384394 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-julia-1.6.1_1.0_amd64.deb Size: 109635718 MD5sum: bcb0ffb3b117bf551e81abc80fa08b40 SHA1: 638b5548ba1982f1fc2ad0571b3bc8f3a8c8fe70 SHA256: ee365bd2079e97b2b77a7100318bf667518481f499fcd48e2d004c4f5b9308c5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: high-level, high-performance dynamic programming language for numerical computing. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library. License: unknown Vendor: Institut Pasteur Package: gensoft-jupyter-notebook-6.1.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 112704 Depends: libstdc++6, libgcc1, gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-jupyter-notebook-6.1.5_1.0_amd64.deb Size: 31283390 MD5sum: 94e933d8531affb737decf7f18e1f6ec SHA1: 03f19f9f4d3581dbbaa9f61ccc814389eceb2890 SHA256: ff8d7c1b9b1cbbfc62b33cf712e39c13ed02bcef925fdac3c960825a56a8153c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include - data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more. License: unknown Vendor: Institut Pasteur Package: gensoft-jupyter-notebook-6.4.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 115093 Depends: libgcc1, gensoft-adm-python-3.8.1, libstdc++6, libc6 Filename: pool/main/gensoft-jupyter-notebook-6.4.3_2.0_amd64.deb Size: 32398926 MD5sum: 0019264a54688a54bcf0a750859e1a14 SHA1: add6e03d864b0a5c3b80278910f333618d77aef6 SHA256: 05e77fddbd240bb8a8287b3891eabed2a0385e86aa14e3cf45d753e9290dfb89 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include - data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more. License: unknown Vendor: Institut Pasteur Package: gensoft-jvarkit-2024.08.25 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 26970 Depends: gensoft-graalvm-ce-java17-22.3.1 Filename: pool/main/gensoft-jvarkit-2024.08.25_1.0_amd64.deb Size: 25400012 MD5sum: 4ee9cb8ab505f6f3b6a34b544a633e82 SHA1: 8473a82947d584529b3591f8ba29421d7fe780e7 SHA256: c1aa255f229a288428bceb6c7c00010e5c40b9795a5e50c0789243bca819f7ee Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Java utilities for Bioinformatics License: unknown Vendor: Institut Pasteur Package: gensoft-kaiju-1.7.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3795 Depends: gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-kaiju-1.7.3_1.0_amd64.deb Size: 1677958 MD5sum: a443bdbcf7b5ac00d2f16446a10dd721 SHA1: 519e9f8d39b794c754a2a4157dde9239026fdba3 SHA256: 9360bf3dbd2d9cab71cbf08fb3d6a74b4ae8b4271861f3cbe62ee0a1048e8d1d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Kaiju is a program for sensitive taxonomic classification of high-throughput sequencing reads from metagenomic whole genome sequencing or metatranscriptomics experiments. ` License: unknown Vendor: Institut Pasteur Package: gensoft-kaks-calculator-1.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 461 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-kaks-calculator-1.2_2.0_amd64.deb Size: 286310 MD5sum: c6a08ba73ade5981a9f26eea31da9a5e SHA1: bb73ecec205afbe14f919966f6ace85f14f0b249 SHA256: b64cb721f2e2bc8eebb05b96ac0f21a11128892fe634f01158d6850d7f444091 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: KaKs_Calculator adopts model selection and model averaging to calculate nonsynonymous (Ka) and synonymous (Ks) substitution rates, attempting to include as many features as needed for accurately capturing evolutionary information in protein-coding sequences. In addition, several existing methods for calculating Ka and Ks are also incorporated into KaKs_Calculator. License: unknown Vendor: Institut Pasteur Package: gensoft-kalign-2.04 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 232 Depends: libc6 Filename: pool/main/gensoft-kalign-2.04_2.0_amd64.deb Size: 108294 MD5sum: b0330325f1ef3b041dc32c3098f3ad47 SHA1: 6aad42510a4e393a29cfc2f8ebd285fcbcd9e2c4 SHA256: aacc104406aeba3e5d53ca96584d40601b2f35975f8250fb764505c25888347d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Kalign is a fast and accurate multiple sequence alignment algorithm designed to align large numbers of protein sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-kallisto-0.46.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3218 Depends: gensoft-hdf5-1.10.6, gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-kallisto-0.46.2_1.0_amd64.deb Size: 1192294 MD5sum: 7205d13eb707feecbaf520eb89b6ce43 SHA1: 22645e313a3d80511b7c11405ba4933cfa1f95d7 SHA256: 73321693b21ca797ff6dd834d671c7d1e21b4113f750ab676d494e3b5b3d7e48 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. License: unknown Vendor: Institut Pasteur Package: gensoft-kallisto-0.48.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3312 Depends: gensoft-hdf5-1.10.6, libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-kallisto-0.48.0_1.0_amd64.deb Size: 1231290 MD5sum: e830925db409e8f3e6c03002bf61dbb5 SHA1: 34ad5d69a7703b75fd6d80ad0298ceccd97504db SHA256: 9d4b555ee5b3ef4bd194256eb54f98c060a1a64e62c036cac2b1349220e599d2 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. License: unknown Vendor: Institut Pasteur Package: gensoft-kallisto-0.51.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1957 Depends: zlib1g, gensoft-hdf5-1.10.6, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-kallisto-0.51.1_1.0_amd64.deb Size: 836278 MD5sum: 95abc591c7fd677d4842236314c4d668 SHA1: e438117799a257500ac3b69b840da6ceec6317af SHA256: c5be29c95d9bd1173849c72c8b2bf2bb4b583b6be684dd069392081ed0f7ad3b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. License: unknown Vendor: Institut Pasteur Package: gensoft-kamrat-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 7055 Depends: gensoft-boost-1.72.0, zlib1g, gensoft-armadillo-9.800.4, gensoft-mlpack-3.4.2, gensoft-hdf5-1.10.6, gensoft-atlas-3.10.2, gensoft-zstd-1.4.4, gensoft-xz-5.2.4, libc6, libbz2-1.0, gensoft-gcc-9.2.0, gensoft-blas-3.8.0 Filename: pool/main/gensoft-kamrat-1.0.0_1.0_amd64.deb Size: 2035074 MD5sum: 0138ded92b219514e1f3a761dc91d7d0 SHA1: 3fb66a22ce1ad30ddadf0a32f9d8069ebcb445ba SHA256: 3badd661fa1f7025a6a64cfe5be410fa958e2723c77d3fc0a96c9bf46f7c3db0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: KaMRaT is a C++ tool for finding substrings with interesting properties in large NGS datasets License: unknown Vendor: Institut Pasteur Package: gensoft-kaptive-0.7.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 85158 Depends: gensoft-blast+-2.10.0, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-kaptive-0.7.0_1.0_amd64.deb Size: 25189214 MD5sum: 28499057507c1684d350fb4bd63f67e0 SHA1: d7ff170f8d2ec79825661f46ed6e97dfa11feafe SHA256: 33c496ad2f097a4bbd04fe88f5342e261ebbeba278c5b2c23b6da2b797f45223 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: reports information about K and O types for Klebsiella genome assemblies. License: unknown Vendor: Institut Pasteur Package: gensoft-kaptive-3.1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 194673 Depends: gensoft-minimap2-2.28, libc6, libgcc-s1, zlib1g, libstdc++6, gensoft-adm-python-3.10.7 Filename: pool/main/gensoft-kaptive-3.1.0_1.0_amd64.deb Size: 62374992 MD5sum: c1e3d83ad823ac6e073887de3808bb6e SHA1: 5b317bd62a0fe3057417a71d909dec20b8da6ea7 SHA256: c2fdc99fcde9f7320017d0d927a893441176d2917e3f9e4cfcede740abd96a6a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: reports information about K and O types for Klebsiella genome assemblies. License: unknown Vendor: Institut Pasteur Package: gensoft-khmer-2.1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 140675 Depends: libc6, gensoft-adm-python-2.7.17, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-khmer-2.1.2_1.0_amd64.deb Size: 42081628 MD5sum: 1961174aa1698d9bdd939daa81ee7d1e SHA1: e3eb1b40ea75988f33b29cc986440336a66146ef SHA256: 3114e6c246895b389e196f2a68c6f5e0bcec3e0eb77f397e93ca31e557b15015 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name. License: unknown Vendor: Institut Pasteur Package: gensoft-king-2.2.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1572 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-king-2.2.4_1.0_amd64.deb Size: 763704 MD5sum: d98385321014fbdd0cc27c40035ad023 SHA1: 4ff43304cdb735a10b620b1b2da6fa178d158889 SHA256: 4146769e3e7996ddcebe84be8e484180fd9a3a899261f179f9d577923160d0e3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a toolset making use of high-throughput SNP data typically seen in a genome-wide association study (GWAS) or a sequencing project. Applications of KING include family relationship inference and pedigree error checking, population substructure identification, forensics, gene mapping, etc. License: unknown Vendor: Institut Pasteur Package: gensoft-king-2.2.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1599 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-king-2.2.7_1.0_amd64.deb Size: 775576 MD5sum: c7c9c1d02eb8cb4f358cfa07ac7e0b4f SHA1: 96ebdcec46e2298749347e87a2d9fcfe9d479a0b SHA256: 6cc9f68a501340b9aadd7921aff10d70d92d2a6e143117af81750ed1b267d840 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a toolset making use of high-throughput SNP data typically seen in a genome-wide association study (GWAS) or a sequencing project. Applications of KING include family relationship inference and pedigree error checking, population substructure identification, forensics, gene mapping, etc. License: unknown Vendor: Institut Pasteur Package: gensoft-kleborate-0.1.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 123340 Depends: libc6, gensoft-blast+-2.10.0, gensoft-adm-python-2.7.17, gensoft-mash-2.2 Filename: pool/main/gensoft-kleborate-0.1.0_2.0_amd64.deb Size: 32718810 MD5sum: 24ecaed14eb52ae6d554170f34ab6859 SHA1: 75b8efb259933ce6eeaa21dc5fad199bae6f40fa SHA256: 938f566a29e2486ecbece4dce71d046d479cb80a9e891718632d511621a9479c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a MLST-style approach for identifying ybt and clb variants from genome data. License: unknown Vendor: Institut Pasteur Package: gensoft-kleborate-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 151380 Depends: gensoft-blast+-2.10.0, gensoft-adm-python-3.8.1, gensoft-mash-2.2 Filename: pool/main/gensoft-kleborate-1.0.0_1.0_amd64.deb Size: 43872966 MD5sum: 1cff0448e81d41044fe4e2ab509d2676 SHA1: 2203679a58f581cf07b135ae4c6bc48e06ac89b8 SHA256: 03964db6e50c3d79ebf4ad385fba99c2e77c4c96e9bdda61ae08a9b00b611bba Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a MLST-style approach for identifying ybt and clb variants from genome data. License: unknown Vendor: Institut Pasteur Package: gensoft-kleborate-2.0.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 163307 Depends: gensoft-mash-2.2, libc6, gensoft-blast+-2.10.0, gensoft-adm-python-3.8.1, libgcc-s1, zlib1g Filename: pool/main/gensoft-kleborate-2.0.0_2.0_amd64.deb Size: 47014458 MD5sum: 121f6ea8cba287baa546e88ccdb4fd26 SHA1: 20e7e39de28cd66fcd3f4752db06d018bf650719 SHA256: 2ff9e28459e1be4950b7afd0ddcb60cc98e3cf214c956d034dece455d0c9b80e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a MLST-style approach for identifying ybt and clb variants from genome data. License: unknown Vendor: Institut Pasteur Package: gensoft-kleborate-2.3.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 193929 Depends: gensoft-blast+-2.13.0, gensoft-mash-2.3, libgcc, zlib1g, gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-kleborate-2.3.2_2.0_amd64.deb Size: 54212260 MD5sum: 335814ff0112247ae0b20b131e8229b3 SHA1: d70d1c157f2049255833e148c95954f8a2874274 SHA256: d541554d8938bc6201aff099ac2a7dfea79de2e644895488e1f5f10d8aaa3251 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a MLST-style approach for identifying ybt and clb variants from genome data. License: unknown Vendor: Institut Pasteur Package: gensoft-kleborate-3.1.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 258314 Depends: libgcc-s1, gensoft-minimap2-2.28, libstdc++6, libc6, gensoft-adm-python-3.10.7, zlib1g, gensoft-mash-2.3 Filename: pool/main/gensoft-kleborate-3.1.3_1.0_amd64.deb Size: 75957496 MD5sum: ae8d93b4af252cd565f77a982eba3028 SHA1: e05a61513a83d829896b42a520d23f1f12305a0a SHA256: 36c142f8e12e0caac1909b3c58bd59c430105d699c87163f826323d4fc3d854d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a MLST-style approach for identifying ybt and clb variants from genome data. License: unknown Vendor: Institut Pasteur Package: gensoft-kleborate-3.2.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 326403 Depends: gensoft-mash-2.3, libc6, zlib1g, gensoft-minimap2-2.28, gensoft-ezclermont-0.7.0-rc, gensoft-amrfinder-4.0.23, gensoft-adm-python-3.10.7, libstdc++6, gensoft-ecoli-serotyping-2.0.0, libgcc Filename: pool/main/gensoft-kleborate-3.2.4_1.0_amd64.deb Size: 96779668 MD5sum: 355a1d0a7fa3a8997ad565cc79a3d008 SHA1: 63de5ea92eb79bcb4a838134afb925ebf0e9e761 SHA256: a7ceada7e0261d7dcfea6465a7362ff8ca08a4433331c35af509155f836d11ec Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a MLST-style approach for identifying ybt and clb variants from genome data. License: unknown Vendor: Institut Pasteur Package: gensoft-kltpicker-1.2.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 267484 Depends: gensoft-cuda-11.2, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-kltpicker-1.2.8_1.0_amd64.deb Size: 88612232 MD5sum: 982387e31860517ff1b785c36a73fdd4 SHA1: 94136c093f1bfd07433c3732b709f83f312b239d SHA256: 21f850eae2ecb8ce6c04573068d30284ad716089f541d121bb11ef6d9f08ef1d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: particle picking using data-driven optimal templates License: unknown Vendor: Institut Pasteur Package: gensoft-kma-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 338 Depends: zlib1g, libc6 Filename: pool/main/gensoft-kma-1.0.1_1.0_amd64.deb Size: 157696 MD5sum: d6c0cc4c7a2d81f144cda7f520247433 SHA1: 68e458e24d392b830deb79a2596884dd773c5625 SHA256: f9e4d07a2c866c58d9789b1f1b8be6497e80548ddc39789ffced1cc293724464 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. KMA is particulary good at aligning high quality reads against highly redundant databases, where unique matches often does not exist. It works for long low quality reads as well, such as those from Nanopore. Non-unique matches are resolved using the ConClave sorting scheme, and a consensus sequence are outputtet in addition to other common attributes, based on our users demands License: unknown Vendor: Institut Pasteur Package: gensoft-kma-1.2.22 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1486 Depends: zlib1g, libc6 Filename: pool/main/gensoft-kma-1.2.22_1.0_amd64.deb Size: 783588 MD5sum: 04b447b7478a98fbb45ffd5c8ac3fb22 SHA1: 9eef8a919ad15cc4feb734780fdabece18e82801 SHA256: 19d33adbe65daa674a2e008ec3c571cdddc4a4874885e62de64a7531cc607925 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. KMA is particulary good at aligning high quality reads against highly redundant databases, where unique matches often does not exist. It works for long low quality reads as well, such as those from Nanopore. Non-unique matches are resolved using the ConClave sorting scheme, and a consensus sequence are outputtet in addition to other common attributes, based on our users demands License: unknown Vendor: Institut Pasteur Package: gensoft-kma-1.3.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1605 Depends: libc6, zlib1g Filename: pool/main/gensoft-kma-1.3.4_1.0_amd64.deb Size: 837274 MD5sum: 44fd63b6772f3781be65a1f878519adb SHA1: 256fdb16ca57ccb13ab85af95ecbcd92ce1af23d SHA256: 0e4c1e989ec4b985eaa127c36292ec59d3b5feb410073e6297e3620eb3657006 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. KMA is particulary good at aligning high quality reads against highly redundant databases, where unique matches often does not exist. It works for long low quality reads as well, such as those from Nanopore. Non-unique matches are resolved using the ConClave sorting scheme, and a consensus sequence are outputtet in addition to other common attributes, based on our users demands License: unknown Vendor: Institut Pasteur Package: gensoft-kma-1.4.14 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1774 Depends: libc6, zlib1g Filename: pool/main/gensoft-kma-1.4.14_1.0_amd64.deb Size: 843486 MD5sum: d32c8d9190f6998f648ebecc6d5f9f3e SHA1: a2b3afc12136bc126f43afb4cc196afeae647655 SHA256: 9477526148ca11c5fd42e0d61edfe918218ccab3ce5bdb64c6a3bf52d3833ecb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. KMA is particulary good at aligning high quality reads against highly redundant databases, where unique matches often does not exist. It works for long low quality reads as well, such as those from Nanopore. Non-unique matches are resolved using the ConClave sorting scheme, and a consensus sequence are outputtet in addition to other common attributes, based on our users demands License: unknown Vendor: Institut Pasteur Package: gensoft-kmc-3.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4796 Depends: gensoft-gcc-9.2.0, libc6, gensoft-zlib-1.2.11 Filename: pool/main/gensoft-kmc-3.0.1_1.0_amd64.deb Size: 1622918 MD5sum: d074756b510a5fd53934cff2f3875b4f SHA1: 8faba381721d76f0a677d39aaa3d61de6e05f360 SHA256: 78aeff66cd98f9b3956da11116e068a469be5df622e8b109d1d168849c3ee520 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: KMC-K-mer Counter is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects. KMC scans the raw reads and produces a compact representation of all non-unique reads accompanied with number of their occurrences. The algorithm implemented in KMC makes use mostly of disk space rather than RAM, which allows to use KMC even on rather typical personal computers. License: unknown Vendor: Institut Pasteur Package: gensoft-kmc-3.1.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4838 Depends: gensoft-zlib-1.2.11, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-kmc-3.1.1_2.0_amd64.deb Size: 1644812 MD5sum: d1205d18a19b218439d9d49db75720d0 SHA1: 5b25adc87c22eecdf77bc0b119c8fc022f813e76 SHA256: a97db2b37d4493e39c553d071a5d3789202d2d253fa69d77f3d7ffa273af17bc Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: KMC-K-mer Counter is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects. KMC scans the raw reads and produces a compact representation of all non-unique reads accompanied with number of their occurrences. The algorithm implemented in KMC makes use mostly of disk space rather than RAM, which allows to use KMC even on rather typical personal computers. License: unknown Vendor: Institut Pasteur Package: gensoft-kmc-3.2.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 14669 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-kmc-3.2.1_2.0_amd64.deb Size: 3684298 MD5sum: a8a939c7184ffc8c28e072afca050754 SHA1: ea8a4be8a77726c062dff69b931e6c8167d1a48f SHA256: 75523cbcd97f9b4722359e02ce3feafefc4a0bfb8df3f150eefa12104943da2a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: KMC-K-mer Counter is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects. KMC scans the raw reads and produces a compact representation of all non-unique reads accompanied with number of their occurrences. The algorithm implemented in KMC makes use mostly of disk space rather than RAM, which allows to use KMC even on rather typical personal computers. License: unknown Vendor: Institut Pasteur Package: gensoft-kmdiff-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4544 Depends: libc6, zlib1g, gensoft-kmtricks-1.4.0, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-kmdiff-1.1.0_1.0_amd64.deb Size: 1308620 MD5sum: b4f92d490636a0d5ea5683d8d996777e SHA1: 03ab2f86a0020ded7f2516ddafaf6454807b3baa SHA256: 9e31d5af1b92b61023900160e19bd806f1438dd24a1ba500c1869bd7b6f14336 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: kmdiff provides differential k-mers analysis between two populations (control and case). License: unknown Vendor: Institut Pasteur Package: gensoft-kmer-db-1.7.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 453 Depends: zlib1g, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-kmer-db-1.7.5_1.0_amd64.deb Size: 197310 MD5sum: e242e2216a75b6bd4325ff87fffaf696 SHA1: a9a38f648c19445d617a6a7703af1aa6bae3574c SHA256: 147e0d6bf44d788c5aaee89977d3e2b13bf68396b231d056ece8daa376cf590d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Kmer-db is a new tool for estimating evolutionary relationship on the basis of k-mers extracted from genomes or sequencing reads. License: unknown Vendor: Institut Pasteur Package: gensoft-kmer-sets-compression-744633c Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 21333 Depends: gensoft-boost-1.81.0, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-kmer-sets-compression-744633c_1.0_amd64.deb Size: 5008242 MD5sum: cf223a79c23e64c2c02548e299f138e2 SHA1: 354200ecb5dae2729eb18d5ec809323140bd4a76 SHA256: 345bed1376236385edf570ddbf0dd0a1151174600bd5f5fe819b1ff3bd9017d5 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Compression of Multiple k-mer Sets License: unknown Vendor: Institut Pasteur Package: gensoft-kmerfinder-3.0.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 16 Depends: gensoft-adm-python-3.8.1, gensoft-kma-1.3.4, libc6 Filename: pool/main/gensoft-kmerfinder-3.0.2_1.0_amd64.deb Size: 7176 MD5sum: d5195b2ef37ed23593269605370453f6 SHA1: 792b88dd5d59aeb64ed65aaeb5f45b1035918f8c SHA256: 2408798342628c0aa1a2338f8feb8eb698ffa3e7c72cc9350fc23d3e715644b6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: find the best match (species identification) to the reads in one or more fastq files or one fasta file in a (kmer) database produced using the KMA program. The method outputs the best matches, along with additional taxonomic information, if that option is selected. License: unknown Vendor: Institut Pasteur Package: gensoft-kmergenie-1.7051 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7294 Depends: gensoft-gcc-9.2.0, gensoft-r-3.6.2, gensoft-adm-python-2.7.17, libc6, gensoft-ghostscript-9.50, zlib1g Filename: pool/main/gensoft-kmergenie-1.7051_1.0_amd64.deb Size: 2458102 MD5sum: feb92a826ff08920a5c30ce63e5263b9 SHA1: ed660426d306da5cc3b045afb5f3e93690784ec0 SHA256: 2dd7eda7a4d7aa6cc264bce68465622dfe41fff1d682d7418d14d2cd306fbaea Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: estimates the best k-mer length for de novo assembly License: unknown Vendor: Institut Pasteur Package: gensoft-kmernorm-1.05 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 49 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-kmernorm-1.05_1.0_amd64.deb Size: 16548 MD5sum: cedad623d0c29ce3dc2ef1cbb7cb019f SHA1: 8b9b0fa89e7f33a0c4f07ab3626ac650a0369983 SHA256: c1809f01ae8767a155866aa20bcf756d4a00e20849b8836ef2d9bba25eefe366 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: normalizes the kmer depth to the target coverage using sampling method and filters the reads according to the cutoff threshold. License: unknown Vendor: Institut Pasteur Package: gensoft-kmerstream-1.1 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 165505 Depends: gensoft-adm-python-2.7.17, gensoft-gcc-9.2.0, libc6, zlib1g Filename: pool/main/gensoft-kmerstream-1.1_3.0_amd64.deb Size: 49382746 MD5sum: a0a8e89cde557117aabb79d4109a6c82 SHA1: 0d8a4ddd029dc278c2b82969ccb3b7486e8c8b92 SHA256: ebca9fe4e60b8d1c858d7999d641514eeb2ac5bb228e9e3dd2174f614e8bc94b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Streaming algorithm for computing kmer statistics for massive genomics datasets. License: unknown Vendor: Institut Pasteur Package: gensoft-kmindex-0.5.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 10095 Depends: zlib1g, gensoft-gcc-9.2.0, libc6, gensoft-boost-1.72.0, gensoft-kmtricks-1.4.0 Filename: pool/main/gensoft-kmindex-0.5.2_1.0_amd64.deb Size: 2300926 MD5sum: 0a0c0e8ee73d20d500b1520c4b7f7d55 SHA1: 86c0516df82f29ce2f37fd6786509f16708463f5 SHA256: 3f1afa3328aef0fc4a2e07b6f970ede84bbb47ced98c45e1add34ec03890a6cd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: kmindex is a tool for indexing and querying sequencing samples License: unknown Vendor: Institut Pasteur Package: gensoft-kmtricks-1.4.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12894 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-kmtricks-1.4.0_1.0_amd64.deb Size: 4112488 MD5sum: 3849702b29661adf7b440e02ebdb1beb SHA1: fadb7ef098c42b928261ae1ed79f401f35f6f9c8 SHA256: d31bcc28c95b42d7363a03261ca1fd6a2198a4788f318c72cc70bc6f31c40670 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: modular k-mer count matrix and Bloom filter construction for large read collections License: unknown Vendor: Institut Pasteur Package: gensoft-kofam-scan-1.3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 32 Depends: libbz2-1.0, gensoft-hmmer-3.4, gensoft-ruby-2.7.0, gensoft-parallel-20200222, libc6, zlib1g Filename: pool/main/gensoft-kofam-scan-1.3.0_1.0_amd64.deb Size: 12458 MD5sum: a463dbba69af85a76d9146aaac3b2cf9 SHA1: 2b312d647c7e6e177e0afc3b793ac70d2a277054 SHA256: 5a7c95853b6643e9610f1b43a80a3d8a2a1ae3a239a58385c395d46f056221c2 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a gene function annotation tool based on KEGG Orthology and hidden Markov model. License: unknown Vendor: Institut Pasteur Package: gensoft-kraken-2.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 742 Depends: libc6, rsync, ftp, gensoft-gcc-9.2.0, gensoft-adm-perl-5.30.1, gensoft-blast+-2.10.0 Filename: pool/main/gensoft-kraken-2.1.1_1.0_amd64.deb Size: 316588 MD5sum: ec068d13e4ced2bbda43018464df3d08 SHA1: 8107748405833e59ffdc1ce1d7d3c1beb9e31c4d SHA256: 4a8c0abb4f92cd44cc1b95d97d30dc4fa3c3c70d6c1eb545b1efebd6e72cc01e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies License: unknown Vendor: Institut Pasteur Package: gensoft-kraken-2.1.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 919 Depends: libc6, rsync, ftp, gensoft-gcc-9.2.0, gensoft-adm-perl-5.30.1, gensoft-blast+-2.10.0 Filename: pool/main/gensoft-kraken-2.1.3_1.0_amd64.deb Size: 367910 MD5sum: a43130d09756e50fde7ae48484e0c6e7 SHA1: c8845d747be6c9b5721bc8e6e3d2c2351d68a63a SHA256: 4145b47a37092aa99a5a27250d9066aff5fbf92c991ff81c53ede3db4468537d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies License: unknown Vendor: Institut Pasteur Package: gensoft-kraken-2.1.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1223 Depends: gensoft-adm-perl-5.30.1, libc6, ftp, rsync, gensoft-blast+-2.10.0, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-kraken-2.1.6_1.0_amd64.deb Size: 485904 MD5sum: 39935d93f7e43fbc3ae17efd9c1ffabe SHA1: 7dc9058974f1ccf09d61b91e672efcca78d755e9 SHA256: ea2e04a9c171643118b590a2e091c183cdc9a09ba01c25b50cea0a2fe47f7e7a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies License: unknown Vendor: Institut Pasteur Package: gensoft-krakentools-1.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 94181 Depends: libgcc-s1, libc6, gensoft-adm-python-3.8.1, zlib1g Filename: pool/main/gensoft-krakentools-1.2_1.0_amd64.deb Size: 27450578 MD5sum: ef72aaef50341516cedf20944594f23c SHA1: 539519ab83f687279e9d69a48e554d62371fd3e7 SHA256: e2f82cafd14264a3d12a5a2360d062abc07cc2666abdce6226d14831f6dc5680 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a suite of scripts to be used alongside the Kraken, KrakenUniq, Kraken 2, or Bracken programs. These scripts are designed to help Kraken users with downstream analysis of Kraken results. License: unknown Vendor: Institut Pasteur Package: gensoft-krakenuniq-0.5.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2756 Depends: gensoft-jellyfish-1.1.12, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0, libc6, zlib1g, gensoft-blast+-2.10.0 Filename: pool/main/gensoft-krakenuniq-0.5.8_1.0_amd64.deb Size: 930350 MD5sum: 72faaa2b488b53206eb8b0c98b4a48c4 SHA1: 86642e8bde8acafae150f62cd235e30c06246069 SHA256: dbf7a3b3785479958a5edf1e8df13b6ec42c3fcb51b8c022e0f05b9a0a08eda5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a fast taxonomic classifier for metagenomics data with unique k-mer counting License: unknown Vendor: Institut Pasteur Package: gensoft-kronatools-2.7.1 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 844 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-kronatools-2.7.1_3.0_amd64.deb Size: 219038 MD5sum: d4ff49a030cf42044f8d272e7f26bed8 SHA1: c87437886a9d29ad2a6497aa5fc1b9ba0ca99d64 SHA256: 739b608ebe13e8d70cf5d1013f9fd64e28fb08c23c07651fab3f4fc1ce73126b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Hierarchical data browser. Krona allows hierarchical data to be explored with zoomable HTML5 pie charts. Krona charts can be created using an Excel template or Krona Tools, which includes support for several bioinformatics tools and raw data formats. License: unknown Vendor: Institut Pasteur Package: gensoft-ksnp3-1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 139187 Filename: pool/main/gensoft-ksnp3-1_1.0_amd64.deb Size: 131680932 MD5sum: 2da71de3995bdef6bad8962414c16b51 SHA1: a357065b1ae20761fc18fdf05f5e5434c530fbf7 SHA256: 3e52474ddd9f3937e9e7adc0c47cf9112d49cae70eb617b58c1d413e5b15dc9f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: kSNP identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs. SNP discovery is based on k-mer analysis, and requires no multiple sequence alignment or the selection of a reference genome, so kSNP can take 100s of microbial genomes as input. A SNP locus is defined by an oligo of length k surrounding a central SNP allele. kSNP can analyze both complete (finished) genomes and unfinished genomes in assembled contigs or raw, unassembled reads. Finished and unfinished genomes can be analyzed together, and kSNP can automatically download Genbank files of the finished genomes and incorporate the information in those files into the SNP annotation License: unknown Vendor: Institut Pasteur Package: gensoft-ktreedist-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 75 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-ktreedist-1.0_1.0_amd64.deb Size: 19478 MD5sum: a23abb34a3de9e6ff04c690d215b89da SHA1: ed09e97cc907954350d9cddee2d32548105af37a SHA256: 2c7cbe63957b138cbc1fab5ff83b133292f6184d3ceae464acaf825ab46fc390 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Calculate the minimum branch length distance (or K tree score) from one phylogenetic tree to another. The K tree score provides a measure of the difference in both topology and branch lengths between two trees after scaling one of them to have a global divergence as similar as possible to the other tree License: unknown Vendor: Institut Pasteur Package: gensoft-kyoto-20170410 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 21158 Depends: gensoft-lzo-2.10, libc6, gensoft-gcc-9.2.0, zlib1g, gensoft-lua-5.1.4 Filename: pool/main/gensoft-kyoto-20170410_1.0_amd64.deb Size: 5669384 MD5sum: c1cee269f396350984a4c2b4ef92be5b SHA1: 2e3810858207e1ec39e9fb005d565204925649f0 SHA256: 34c8625f522e7ceb62b1f210d0438c1e1119feca6e0ba6b6bce4a2feb6d03dae Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Kyoto Tycoon is a lightweight network server on top of the Kyoto Cabinet key-value database, built for high-performance and concurrency. License: unknown Vendor: Institut Pasteur Package: gensoft-lagan-2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1118 Depends: gensoft-gcc-9.2.0, gensoft-adm-perl-5.30.1, libc6 Filename: pool/main/gensoft-lagan-2.0_1.0_amd64.deb Size: 296274 MD5sum: cfced1f5e6cf1007b73a105a58c1d1da SHA1: 08441634e896cf7b8411abbc8cbe42684f6658b5 SHA256: 6431bcf83b2aa18ec5ff036659dbc0af91af0e35622601d08863103ee2adaaad Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Tools for genomic alignment. These include the MLAGAN multiple alignment tool, and Shuffle-LAGAN for alignment with rearrangements. All three are based on the CHAOS local alignment tool and combine speed (regions up to several megabases can be aligned in minutes) with high accuracy. License: unknown Vendor: Institut Pasteur Package: gensoft-lammps-2016.11.17 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 164710 Depends: gensoft-gcc-9.2.0, gensoft-openmpi-4.0.5, libc6, libkrb5support0, libtirpc3, libk5crypto3, zlib1g, libcom-err2, libkrb5-3, libgssapi-krb5-2, gensoft-pcre2-10.34, libkeyutils1 Filename: pool/main/gensoft-lammps-2016.11.17_1.0_amd64.deb Size: 62815204 MD5sum: b9877915a4b87e9c07192ebe80945ec9 SHA1: 13a6caf9b1479aa16c02ffebe97f6c07dcd028b2 SHA256: 844f656bceb1c2f51bd7d19f88fe0dfbf7535624ee6a134a84486b066eea8c55 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. License: unknown Vendor: Institut Pasteur Package: gensoft-lammps-2020.03.03 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 158522 Depends: gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17, gensoft-openmpi-4.0.5, zlib1g, libc6 Filename: pool/main/gensoft-lammps-2020.03.03_2.0_amd64.deb Size: 62051934 MD5sum: b7044bb63cac61afa8c0d02a9eb39bcf SHA1: 047a9cbb816f240d84799250a4fe6a247fd87565 SHA256: 31ecb504f50ba3b6a004f633741c598a9903833026551d065ad6c323925c0d05 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. License: unknown Vendor: Institut Pasteur Package: gensoft-lammps-2023.08.02-2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1186318 Depends: libcrypt1, gensoft-libjpeg-turbo-2.0.4, gensoft-curl-7.68.0, zlib1g, gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0, gensoft-libpng-1.6.37, gensoft-hdf5-1.10.6, gensoft-fftw-3.3.8, gensoft-adm-python-3.8.1, gensoft-mkl-2020.4.304, gensoft-netcdf-4.7.3, gensoft-zstd-1.4.4, libc6, libssl1.1 Filename: pool/main/gensoft-lammps-2023.08.02-2_1.0_amd64.deb Size: 342935888 MD5sum: c2c692dafb856d4b30e9daeebef6e89f SHA1: 9ae661d5be0cc5c707c9573297373ed9aba74b8c SHA256: 61c015b8f4d01a9d1669599d3233fec939fd72bbc155405d4007c3075971589c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. License: unknown Vendor: Institut Pasteur Package: gensoft-lap-1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 10671 Depends: gensoft-bowtie2-2.3.5.1, gensoft-adm-python-2.7.17, libc6 Filename: pool/main/gensoft-lap-1.1_1.0_amd64.deb Size: 3297312 MD5sum: 8da9db6674a981993155491f6a4a3d3d SHA1: 169188b62811434cffcbefb25df4fcb7c1603c12 SHA256: 074ba76b1d2e0ef34d7f1ca4ea22db38f6535c0f5ebbc459a2ad377fa8ec4957 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a de novo probabilistic measure of assembly quality which allows an objective comparison of multiple assemblies generated from a same set of reads. Specifically, we define the quality of an assembly as the conditional probability of the sequenced reads given the sequence output by the assembler, value maximized by the true genome sequence. License: unknown Vendor: Institut Pasteur Package: gensoft-lapack-3.10.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 212027 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-lapack-3.10.0_1.0_amd64.deb Size: 177080702 MD5sum: 0aeeb9e70f360140fd350ce175baaee4 SHA1: 3b17ac8a47bf5408426b74303ea84cf3b7bd22fa SHA256: 8cc0102197cf305762a19ee0f243610a4fc619ef136bf621122419fd183cab57 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a Fortran 90 library that provides routines for solving systems of simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue problems, and singular value problems. The associated matrix factorizations (LU, Cholesky, QR, SVD, Schur, generalized Schur) are also provided, as are related computations such as reordering of the Schur factorizations and estimating condition numbers. Dense and banded matrices are handled, but not general sparse matrices. In all areas, similar functionality is provided for real and complex matrices, in both single and double precision License: unknown Vendor: Institut Pasteur Package: gensoft-lapack-3.9.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 11734 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-lapack-3.9.0_1.0_amd64.deb Size: 4488446 MD5sum: 37c5ae011e32120cc13fb87b869eeae0 SHA1: c3f42ec435dcd292e82bbb735edf5c6fa3178191 SHA256: be71c10e5a0b7a3235a54fe392de70f2e4388f373a1d13c2564dd91fe44171c1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a Fortran 90 library that provides routines for solving systems of simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue problems, and singular value problems. The associated matrix factorizations (LU, Cholesky, QR, SVD, Schur, generalized Schur) are also provided, as are related computations such as reordering of the Schur factorizations and estimating condition numbers. Dense and banded matrices are handled, but not general sparse matrices. In all areas, similar functionality is provided for real and complex matrices, in both single and double precision License: unknown Vendor: Institut Pasteur Package: gensoft-last-1060 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 20493 Depends: gensoft-parallel-20200222, libc6, gensoft-gcc-9.2.0, zlib1g, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-last-1060_1.0_amd64.deb Size: 6860832 MD5sum: ab0a34945e70078c23891e6ef503b18a SHA1: 5a787b0a17530e4e7e8f4808b95c6017eab61e1d SHA256: 74418f71ec54223fdf88114488a20a4182d06ee28ee0f9043b081d3cd7d78ad4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LAST finds similar regions between sequences, and aligns them. License: unknown Vendor: Institut Pasteur Package: gensoft-last-1180 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 20355 Depends: zlib1g, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17, gensoft-parallel-20200222, libc6 Filename: pool/main/gensoft-last-1180_2.0_amd64.deb Size: 6888856 MD5sum: 562e22a65a5aea54609979fb39bd39d8 SHA1: bd252e7725e3e045defad05d398c950bf2b2cdbe SHA256: 7ea5da282fec9f5d1198d3e2bf75a5ed95828841439a705e6b7595f232daf89c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: LAST finds similar regions between sequences, and aligns them. License: unknown Vendor: Institut Pasteur Package: gensoft-last-1389 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 20708 Depends: libc6, gensoft-parallel-20200222, zlib1g, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-last-1389_2.0_amd64.deb Size: 7041744 MD5sum: 6fe32fd56e5f98308d7a938b071fe802 SHA1: c30efb40745d0f6605d607149b7466ef51c69e54 SHA256: 8152d6bac311e8afc4f7527b00f7ee9dfce03d69d882131619b1778d44326f29 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: LAST finds similar regions between sequences, and aligns them. License: unknown Vendor: Institut Pasteur Package: gensoft-lastz-1.04.03 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 10743 Depends: libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-lastz-1.04.03_1.0_amd64.deb Size: 5149830 MD5sum: 726abe3cc16715faeb950ced50c03f75 SHA1: 574ab23893253da121ca3b3086a7b8259cc0f281 SHA256: d3b5918843969a657589d1ab7a391b08be27789528f252d30040de3b44dd77f2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. License: unknown Vendor: Institut Pasteur Package: gensoft-lastz-1.04.22 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 10757 Depends: libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-lastz-1.04.22_1.0_amd64.deb Size: 5153904 MD5sum: 2a7687162dd65bd9cd04a1ffa4c1e710 SHA1: 246fff02db93a8a0d6b1d8a696c0fcf239b58ae2 SHA256: 120db14dccb3982d3d35a38eaed9709723147646655443afc12a8958c0c525ca Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. License: unknown Vendor: Institut Pasteur Package: gensoft-lastz-1.04.52 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 10782 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-lastz-1.04.52_1.0_amd64.deb Size: 5196032 MD5sum: 0039f6899a4b601a586ff1640874f15a SHA1: 5577d5a3d7e14f7708755a9498abd0fdf45f9030 SHA256: b82b59616462d7bf43d518816f2e70485a2f3b56f6e764db08d6d67252096f28 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. License: unknown Vendor: Institut Pasteur Package: gensoft-lcms2-2.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 13001 Depends: libc6, gensoft-libtiff-4.1.0, gensoft-xz-5.2.4, zlib1g, gensoft-libjpeg-turbo-2.0.4 Filename: pool/main/gensoft-lcms2-2.9_1.0_amd64.deb Size: 8357908 MD5sum: 12d48f11cc713e800ae91f1c58a88b54 SHA1: ac46d100bb192a463ee63d3d781dce8caaf71f5e SHA256: 9066816213ed368bf0fed55b3653f45743cdc7296a5b4c154115a945ac3fb76e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance. License: unknown Vendor: Institut Pasteur Package: gensoft-ldblockshow-1.40 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5957 Depends: libc6, gensoft-imagemagick-6.9.10-91, zlib1g, gensoft-adm-perl-5.30.1, gensoft-plink-1.90p Filename: pool/main/gensoft-ldblockshow-1.40_1.0_amd64.deb Size: 1453896 MD5sum: 3b4dd50dab0022f32a2cc9ecf1456b6f SHA1: 9618e3ac60dadac379865ddc26b0a038f2850cce SHA256: eb5929fced9531f90929dc0d39e20a8187b2bfaf569c0f001f21356fe559c56e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: LDBlockShow is a fast and effective tool to generate linkage disequilibrium (LD) heatmap from VCF files. License: unknown Vendor: Institut Pasteur Package: gensoft-ldc-1.32.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 417132 Filename: pool/main/gensoft-ldc-1.32.0_1.0_amd64.deb Size: 115708396 MD5sum: cac4b07f0c7123bd2b61201b8e0b6c88 SHA1: 84b18f413d6134dda8b6430b0ec1f7f0f86b1bd9 SHA256: ba4409519f3355c3fa650903c9346a9bd7c583ca68afbeaa671ae62366ce90ee Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The LLVM-based D Compiler. License: unknown Vendor: Institut Pasteur Package: gensoft-leptonica-1.85.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 31270 Depends: gensoft-giflib-5.2.1, gensoft-libwebp-1.1.0, libc6, gensoft-libpng-1.6.37, gensoft-openjpeg-2.3.1, gensoft-libjpeg-turbo-2.0.4, zlib1g, gensoft-libtiff-4.1.0, gensoft-xz-5.2.5 Filename: pool/main/gensoft-leptonica-1.85.0_1.0_amd64.deb Size: 9412394 MD5sum: edd48204bcfb9407f099457165d98e49 SHA1: 14283504609792ca0ce6df3e9aaf96dc8ff45e3e SHA256: 1bf67f92161a91027f0c6c367b1448968d1fd354038522ce4b26eca740e0e94d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Leptonica is an open source library containing software that is broadly useful for image processing and image analysis applications License: unknown Vendor: Institut Pasteur Package: gensoft-lerc-4.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1349 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-lerc-4.0.0_1.0_amd64.deb Size: 331054 MD5sum: 867494ed62dd564c2cd25915dcfff553 SHA1: a050f59c90a49182672fa15664fb96dc95599f43 SHA256: 76093079afbcaec6a2d30577394d73d75918bc209ca3e09fc317b04640c7f0d5 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). License: unknown Vendor: Institut Pasteur Package: gensoft-lesstif-0.95.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 12522 Depends: gensoft-xorg-libs-1.1, libc6, gensoft-freetype-2.10.1, gensoft-libpng-1.6.37, zlib1g, libbz2-1.0 Filename: pool/main/gensoft-lesstif-0.95.2_1.0_amd64.deb Size: 4605398 MD5sum: 415bbb89c92ad8979e59b6488f920c3e SHA1: cf93526e7bb1e591a690e4107ac553006571689c SHA256: 881584080a4fbf3f3f419ddac0500d9b9a81e81edc8a73378a2c91bb6d4be370 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LessTif is an an Open Source version of OSF/Motif License: unknown Vendor: Institut Pasteur Package: gensoft-lexicmap-0.8.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 27632 Depends: libc6 Filename: pool/main/gensoft-lexicmap-0.8.0_1.0_amd64.deb Size: 15132554 MD5sum: 2f1b6582d56147b79c7b2d607a0fe972 SHA1: ebf3eeefb8ac6edbc50afa853368b8f4d567349c SHA256: 861f23e06345c23828a971bdf8038e8589fb6fff200680e2471ca6e0b4472e3d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: LexicMap is a nucleotide sequence alignment tool for efficiently querying gene, plasmid, viral, or long-read sequences (>150 bp) against up to millions of prokaryotic genomes. License: unknown Vendor: Institut Pasteur Package: gensoft-lib-sonlib-july2012-0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2060 Depends: libc6 Filename: pool/main/gensoft-lib-sonlib-july2012-0_1.0_amd64.deb Size: 603832 MD5sum: 72c12108f3db0c96706691433fa35dd1 SHA1: 68050cc25d86607144514fda00524f34127469fd SHA256: fc67e9d73a44e2c88e19ea4ff8dac9e063db66a98a685251b85fa9f3b7232592 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a compact C/Python library for sequence analysis in bioinformatics License: unknown Vendor: Institut Pasteur Package: gensoft-lib-sonlib-september2022-0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 10467 Depends: libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-lib-sonlib-september2022-0_1.0_amd64.deb Size: 3180268 MD5sum: e18ba385d66b4ed0b5436a77f64d0c21 SHA1: b3ef58923df7295ee056103b3146ccaa5ec35dae SHA256: a5a0b186ab1fdedf21237131840ddc6521b9b85133d639d313d525453f097579 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a compact C/Python library for sequence analysis in bioinformatics License: unknown Vendor: Institut Pasteur Package: gensoft-libaec-1.0.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 233 Depends: libc6 Filename: pool/main/gensoft-libaec-1.0.6_1.0_amd64.deb Size: 65424 MD5sum: 1f0c97c6fe0128e13c095b946e7a776b SHA1: 5c6f512b6615842c99ae844524e909df21b0f592 SHA256: b4984b1d12e07b409a602b286d38580888097e9d80743f493ad33b5972c2bc72 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Adaptive Entropy Coding library provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers (samples). License: unknown Vendor: Institut Pasteur Package: gensoft-libaio-0.3.110 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 98 Depends: zlib1g, libc6, libbz2-1.0 Filename: pool/main/gensoft-libaio-0.3.110_1.0_amd64.deb Size: 21314 MD5sum: ddbf97803ba76c96f71be4fbf30b53b6 SHA1: 608e70204fccd488aa34ca74d308a00ba59f664d SHA256: fbfe2876cd942b17e4224ab4e073b05c8711701fa6ab9e5346175c3db6908608 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Linux-native asynchronous I/O facility ("async I/O", or "aio") has a richer API and capability set than the simple POSIX async I/O facility. This library, libaio, provides the Linux-native API for async I/O. The POSIX async I/O facility requires this library in order to provide kernel-accelerated async I/O capabilities, as do applications which require the Linux-native async I/O API. License: unknown Vendor: Institut Pasteur Package: gensoft-libarchive-3.4.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 20348 Depends: gensoft-libxml2-2.9.10, gensoft-xz-5.2.4, libbz2-1.0, zlib1g, gensoft-libiconv-1.16, libc6, libssl1.1 Filename: pool/main/gensoft-libarchive-3.4.2_1.0_amd64.deb Size: 6823228 MD5sum: d3327696a22afb8bf620077a22b3e0fc SHA1: 8a914f4257b4519abb5197cad2d0d2444e33dd20 SHA256: 61f22fc19797667e9eaf132517c719a37cc9b8a4597c3dce7ea9858d33a885de Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Multi-format archive and compression library License: unknown Vendor: Institut Pasteur Package: gensoft-libbam-0.1.19 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2516 Depends: zlib1g, libc6 Filename: pool/main/gensoft-libbam-0.1.19_1.0_amd64.deb Size: 829818 MD5sum: 5ccd6992befcd52d5da6ae0e637850d7 SHA1: eba970697f326067c9513ff8be85a73c5c4bdcfe SHA256: f20e567a2f20ac9e49076c1a14303bfd0fb6e0b66f8fb2c435383b5631a68670 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The BAM library provides I/O and various operations on manipulating nucleotide sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence Alignment/Map) format. License: unknown Vendor: Institut Pasteur Package: gensoft-libbam-2.5.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 802 Depends: gensoft-gcc-9.2.0, gensoft-jsoncpp-1.9.2, zlib1g, libc6 Filename: pool/main/gensoft-libbam-2.5.1_1.0_amd64.deb Size: 267598 MD5sum: 858be22022e67eded12c1d0ff9984746 SHA1: e29e84d6ba443a09b207b755b930432ec7ac20f5 SHA256: 2c136139af1f7cf94a451738a70dc938762aeef237918ff9c9842ba234f19bc0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The BAM library provides I/O and various operations on manipulating nucleotide sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence Alignment/Map) format. License: unknown Vendor: Institut Pasteur Package: gensoft-libbigwig-0.4.6 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 757 Depends: zlib1g, gensoft-curl-7.68.0, libc6 Filename: pool/main/gensoft-libbigwig-0.4.6_1.0_amd64.deb Size: 248036 MD5sum: 3727e1a2ae5d4df6fc5b61607c3081cb SHA1: dff83799a4760315f08adaa50efb7991b104de1f SHA256: 55834ea4c1545777f1fc4f03f8dea2a37a4191afb9d702b7a1f944ac700ea84a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A C library for reading/parsing local and remote bigWig and bigBed files. License: unknown Vendor: Institut Pasteur Package: gensoft-libbigwig-0.4.7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 757 Depends: zlib1g, gensoft-curl-7.68.0, libc6, libssl1.1 Filename: pool/main/gensoft-libbigwig-0.4.7_1.0_amd64.deb Size: 248946 MD5sum: ee5896f460d976741931019858dfe95f SHA1: d764dad226754df3f344f3a24989ec64ab061104 SHA256: 9fdb24b29a55224e0ae1a8082b551c5bfa9b2dbf5db3519f7bc09cc90923f538 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A C library for reading/parsing local and remote bigWig and bigBed files. License: unknown Vendor: Institut Pasteur Package: gensoft-libccd-2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 782 Depends: libc6 Filename: pool/main/gensoft-libccd-2.1_1.0_amd64.deb Size: 219336 MD5sum: e51c9a022c994121b3b762887e118835 SHA1: 55c0c8d416df64d1120c27a1c4c757ca6994ea96 SHA256: 1b6a4a24ae1cc0c58f7f543e511898189a2148acb6493b551c780863d7966189 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: libccd is library for a collision detection between two convex shapes. libccd implements variation on Gilbert-Johnson-Keerthi algorithm plus Expand Polytope Algorithm (EPA) and also implements algorithm Minkowski Portal Refinement (MPR, a.k.a. XenoCollide) License: unknown Vendor: Institut Pasteur Package: gensoft-libccp4-6.5.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 8338 Depends: gensoft-gcc-9.2.0, gensoft-mmdb2-2.0.5 Filename: pool/main/gensoft-libccp4-6.5.1_1.0_amd64.deb Size: 2404842 MD5sum: 2cccc1417dd42942a02863da099c798a SHA1: 9d5c3a67544c280f986d4502669ae6543cb1b97c SHA256: 3e53b326f724f975c5c732b0c23eb9773c7c800b0cfecf5e11126b5cf2e9f850 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Protein X-ray crystallography toolkit - Libraries License: unknown Vendor: Institut Pasteur Package: gensoft-libcerf-1.13 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 172 Depends: libc6 Filename: pool/main/gensoft-libcerf-1.13_1.0_amd64.deb Size: 47700 MD5sum: d95995e2434ea1e692263520f4f9f7ca SHA1: b246fad6b3d1a3b7a15b4933ff3da3f3e00b20e4 SHA256: 037307c1ac081aa16a266061a9ad7cc1055af5aa400424465340a32155460d99 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions. License: unknown Vendor: Institut Pasteur Package: gensoft-libdeflate-1.8 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 286 Depends: libc6 Filename: pool/main/gensoft-libdeflate-1.8_1.0_amd64.deb Size: 111992 MD5sum: c01fc8f2a3d98b7d3a384d03f98ef7fa SHA1: d4920adae1cb14a1109dcf43b12358d5f705183a SHA256: 30de7b9821e808401efec79fe4499473911e17215ac3414c9f0e37f335d55af9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Heavily optimized library for DEFLATE/zlib/gzip compression and decompression. License: unknown Vendor: Institut Pasteur Package: gensoft-libdivsufsort-2.0.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 111 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-libdivsufsort-2.0.1_1.0_amd64.deb Size: 50346 MD5sum: 0a1f2923ba8efab1aeb95eb08eccfd32 SHA1: 546c3a6da80208b8c1191e89952579d9a71e4929 SHA256: 9a37898b9ce6be1002e2e49720e42b8c79d9b579b6e23a3bdd5830bc878846c3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A lightweight suffix-sorting library License: unknown Vendor: Institut Pasteur Package: gensoft-libdrm-2.4.100 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1981 Depends: gensoft-xorg-libs-1.1, libc6 Filename: pool/main/gensoft-libdrm-2.4.100_1.0_amd64.deb Size: 662580 MD5sum: 85125087df7be5e0e7fda7778e167b20 SHA1: 88882f6e433c8df9ed9c2a2cd5860a1f48c35bc3 SHA256: 8855cc37b322e236f276b4ad305b039659c6defc9e7d1cab79ef78c2ee027cb7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LIBDRM is the cross-driver middleware which allows user-space applications (such as Mesa and 2D drivers) to communicate with the Kernel by the means of the DRI protocol License: unknown Vendor: Institut Pasteur Package: gensoft-libepoxy-1.5.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7914 Depends: libc6 Filename: pool/main/gensoft-libepoxy-1.5.5_1.0_amd64.deb Size: 1795512 MD5sum: c9c6ad75b363aedbe5a0865fea6874b2 SHA1: fd17abb1039aa4e153cb7161e832cca00cf86111 SHA256: ff5570f09d65209a49f124f536a2ba73ea8b4ac662f46c0c622060eb476cc43c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Epoxy is a library for handling OpenGL function pointer management for you License: unknown Vendor: Institut Pasteur Package: gensoft-libffi-3.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 156 Depends: libc6 Filename: pool/main/gensoft-libffi-3.2.1_1.0_amd64.deb Size: 55694 MD5sum: 5653d2da9980680d23ade98639373c02 SHA1: f3d4157b9dd551e0e64eaf5546115f2935b364af SHA256: 851df6c8fd60d4c8909095ecb96c69ff474af4d0c0468343811f0e375284cb9f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A Portable Foreign Function Interface Library License: unknown Vendor: Institut Pasteur Package: gensoft-libffi-3.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 351 Depends: libc6 Filename: pool/main/gensoft-libffi-3.3_1.0_amd64.deb Size: 234192 MD5sum: 9c7dce3236272f010d4ca3b384876dd1 SHA1: c265320ced7f1b357f7a57cb471e7042a159d830 SHA256: c7b478e37c28450c870df7711852a3828e67f39cd7d61459f9c742790a60ebd1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A Portable Foreign Function Interface Library License: unknown Vendor: Institut Pasteur Package: gensoft-libfuse-2.9.9 Version: 1.0 Architecture: amd64 Maintainer: 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reference implementation of the Linux FUSE (Filesystem in Userspace) interface License: unknown Vendor: Institut Pasteur Package: gensoft-libgd-gd-2.2.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3701 Depends: gensoft-libtiff-4.1.0, zlib1g, libc6, gensoft-xz-5.2.4, gensoft-freetype-2.10.1, gensoft-libpng-1.6.37, libbz2-1.0, gensoft-fontconfig-2.13.91, gensoft-xorg-libs-1.1, gensoft-libjpeg-turbo-2.0.4, gensoft-expat-2.2.9 Filename: pool/main/gensoft-libgd-gd-2.2.5_1.0_amd64.deb Size: 1083714 MD5sum: c6abde5f73e740c1fc772467cfe95285 SHA1: 16e8260c58be797fce86cd7a9337c00e3f8205d8 SHA256: b6ee37cd758f9abb1354e8f6b27c3692253f24a3f25ef5693344929692da617d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-libgenome-1.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 36082 Depends: gensoft-gcc-9.2.0, libc6 Filename: 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License: unknown Vendor: Institut Pasteur Package: gensoft-libgeotiff-1.7.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1142 Depends: gensoft-gcc-9.2.0, zlib1g, libssl1.1, gensoft-cmake-3.31.5, gensoft-sqlite-3.31.0, gensoft-curl-7.68.0, libc6, gensoft-libjpeg-turbo-2.0.4, gensoft-libtiff-4.1.0, gensoft-proj-9.6.2 Filename: pool/main/gensoft-libgeotiff-1.7.4_1.0_amd64.deb Size: 370430 MD5sum: b1390f1814f43a9bc056c14784f27b91 SHA1: 132c7e5de85230b83dc0f2fc36769ec93b564d6a SHA256: a1c6fc3126fbf6f5fa8abb027349d84d426ee0426084629e7c195cb11989c00d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: library designed to permit the extraction and parsing of the "GeoTIFF" Key directories, as well as definition and installation of GeoTIFF keys in new files. License: unknown Vendor: Institut Pasteur Package: gensoft-libgit2-0.28.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4329 Depends: libc6, zlib1g, libssl1.1, gensoft-libssh2-1.9.0 Filename: pool/main/gensoft-libgit2-0.28.4_1.0_amd64.deb Size: 1626258 MD5sum: b483a780582b66148e7c9a08fc31ff53 SHA1: 2f87a120d2614faa1fb6d54d449fe26a51b38427 SHA256: 25f8e5155537cd2523dc508f60922614fd34e34330d4b3fe6b94be64ce606ef2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings. License: unknown Vendor: Institut Pasteur Package: gensoft-libgtextutils-0.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 421 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-libgtextutils-0.7_1.0_amd64.deb Size: 129804 MD5sum: 93ab36eef36f5662b36633072b728f6b SHA1: 618e2ff75022f547926fac66eb0fe0451994e727 SHA256: 52d9db365aaa921a22933d649471110c70d4caacddab08591b5a8c87390ec765 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Gordon-Text_utils-Library License: unknown Vendor: Institut Pasteur Package: gensoft-libhandlegraph-5e1a64db Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 34955 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-libhandlegraph-5e1a64db_1.0_amd64.deb Size: 7425116 MD5sum: 991add06492005e3e60d14e0d8aa2e0f SHA1: 72d11792c116fb11c20d9a7553cb6f9a10f0e5d8 SHA256: 093576d0a94853e4a56451c4c54456bdb8968ea2dbb89f2e41fa7fb18bc8b3e4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A handle-based abstraction for graph access License: unknown Vendor: Institut Pasteur Package: gensoft-libiconv-1.16 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1935 Depends: libc6 Filename: pool/main/gensoft-libiconv-1.16_1.0_amd64.deb Size: 955168 MD5sum: 0ca81bf33c8e84ccfa7a83354e25e0de SHA1: 86231f9312597bf365d84c698f1b421110595aa2 SHA256: 1ef6d1d432d5d59c3c7ae561b56e790b53e60e27ea93410fc4422a82d32500b0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Accessibility Toolkit provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. License: unknown Vendor: Institut Pasteur Package: gensoft-libimagequant-2.12.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 217 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-libimagequant-2.12.6_1.0_amd64.deb Size: 101086 MD5sum: 2ed103132b3eb13f31d5dd85abfcf090 SHA1: 367453110264d09b7a27888e2edb3ee44bd17bda SHA256: 9134bb5a53c3ead626607a099956dc8c4fed302b3611f511a69a660a6dcf8082 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Small, portable C library for high-quality conversion of RGBA images to 8-bit indexed-color (palette) images. License: unknown Vendor: Institut Pasteur Package: gensoft-libjpeg-turbo-2.0.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2745 Depends: libc6 Filename: pool/main/gensoft-libjpeg-turbo-2.0.4_1.0_amd64.deb Size: 781460 MD5sum: 288ce1cf5e7f711fa0c4fe0fe7b5b785 SHA1: 485f13f1b15ebb54bacd4644469f23948bc9e488 SHA256: c1f3d01ea43bba05b4b87e2a2afeee19f98fe3578f3b3f86b849bab9aa0634c1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: libjpeg-turbo is a JPEG image codec that uses SIMD instructions (MMX, SSE2, AVX2, NEON, AltiVec) to accelerate baseline JPEG compression and decompression on x86, x86-64, ARM, and PowerPC systems. License: unknown Vendor: Institut Pasteur Package: gensoft-libjpeg-turbo-2.0.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2868 Depends: libc6 Filename: pool/main/gensoft-libjpeg-turbo-2.0.6_1.0_amd64.deb Size: 808180 MD5sum: c7c51ca079ee4533a0d3c146087758b5 SHA1: 53963c99f45db32a52db4d5ee3bed85645426cf6 SHA256: 862ef9d7a92c7f81288dbb7eb3c3ee919aa7913830e54a22a747c51b94108b39 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: libjpeg-turbo is a JPEG image codec that uses SIMD instructions (MMX, SSE2, AVX2, NEON, AltiVec) to accelerate baseline JPEG compression and decompression on x86, x86-64, ARM, and PowerPC systems. License: unknown Vendor: Institut Pasteur Package: gensoft-libmagic-5.38 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6474 Depends: libc6, zlib1g Filename: pool/main/gensoft-libmagic-5.38_1.0_amd64.deb Size: 613784 MD5sum: a1351da7af80b89443cf9ae1d6e6a6e8 SHA1: 28794671a68f7b82a85e0e490685b07030164f4e SHA256: 725eac0d34e4443931894a9bac71adffbeacd0e63378fbae6363034a85375efd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-libmaus2-2.0.813 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 234202 Depends: gensoft-snappy-1.1.8, gensoft-gmp-6.2.0, gensoft-curl-7.68.0, libssl1.1, gensoft-xz-5.2.5, libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-libmaus2-2.0.813_1.0_amd64.deb Size: 32723886 MD5sum: 9e21e088e9fab2fff297522c58b763e9 SHA1: fa123e0e4822ad71e0fb75f31ef1ee141723b29f SHA256: 2b3f1585fefb4ade50ced3b8a2c64a392a696bbd371baa4e62f631515067a788 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: collection of data structures and algorithms License: unknown Vendor: Institut Pasteur Package: gensoft-libmems-1.6.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 175496 Depends: gensoft-libgenome-1.3.1, gensoft-libmuscle-1.0.0, libc6, gensoft-gcc-9.2.0, gensoft-boost-1.72.0 Filename: pool/main/gensoft-libmems-1.6.0_1.0_amd64.deb Size: 35323182 MD5sum: 13f5ee9587ce7c0f037b4f5112c24a9b SHA1: 44fa11c7a98c3d26ac247ca116148e5e33eeb54c SHA256: 4672dba057f7659418752ea506270d64701db4bd2cd54c62cf00d82b41a173a0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: software development library to support DNA string matching and comparative genomics. License: unknown Vendor: Institut Pasteur Package: gensoft-libmng-2.0.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5605 Depends: zlib1g, libc6, gensoft-libjpeg-turbo-2.0.4 Filename: pool/main/gensoft-libmng-2.0.3_1.0_amd64.deb Size: 1570548 MD5sum: eb394247a68d479f823a4bf808322e40 SHA1: 990477c94bc1c08d65d790c5595942af90032cfd SHA256: 441a4f70728840a04cecc9ea6f1d57d9e49cae690c889c38f4e019043c7907dc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: libmng -THE reference library for reading, displaying, writing and examining Multiple-Image Network Graphics. MNG is the animation extension to the popular PNG image-format. License: unknown Vendor: Institut Pasteur Package: gensoft-libmolgrid-0.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 157231 Depends: libbz2-1.0, gensoft-zstd-1.4.4, gensoft-xz-5.2.4, gensoft-openbabel-3.1.1, gensoft-boost-1.72.0, gensoft-cuda-11.2, gensoft-adm-python-3.8.1, libgcc-s1, libc6, gensoft-icu-65.1, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-libmolgrid-0.2.1_1.0_amd64.deb Size: 38464864 MD5sum: 7e40a708b23d2512ad34bfdec480e458 SHA1: 44e8fae26d210b1dcde677a5f5e20e3b46ad2325 SHA256: 563ee17e689c91da79c90434fb0ec85940b021ac65de92d7497f0813d2efc2e2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This tool gets a CRISPR profile by identifying the presence of known spacers and direct repeats (DRs) in a given sequence based on a catalogue. License: unknown Vendor: Institut Pasteur Package: gensoft-libmolgrid-0.5.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 185338 Depends: gensoft-zstd-1.4.4, libbz2-1.0, gensoft-adm-python-3.8.1, zlib1g, gensoft-cuda-11.7, libc6, gensoft-gcc-9.2.0, gensoft-xz-5.2.5, gensoft-openbabel-3.1.1, libgcc-s1, gensoft-icu-65.1, gensoft-boost-1.72.0 Filename: pool/main/gensoft-libmolgrid-0.5.2_1.0_amd64.deb Size: 46273436 MD5sum: e5836d7d1ddc805398bb4a232ea67d37 SHA1: d5ba3a0808bd85ee3d92341c8b5fe61d96422a1a SHA256: 8d036261d2f360854d0a62b9c86bdb6e28de52b11fbf98c4c1dbce2752354e2c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: libmolgrid is a library to generate tensors from molecular data, with properties that make its output particularly suited to machine learning License: unknown Vendor: Institut Pasteur Package: gensoft-libmuscle-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 18772 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-libmuscle-1.0.0_1.0_amd64.deb Size: 5456950 MD5sum: 172812c7c558a8cea1542e314bf175c0 SHA1: 7fddd872f41e1fdd4f0ab31a78533abf462c4389 SHA256: 7bfe56058ea3256594af90b01df42329acceefb20ad6787592bab9d8e713f601 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a refactorization of the popular MUSCLE v3.6 alignment software into a development library License: unknown Vendor: Institut Pasteur Package: gensoft-libneurosim-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 894 Depends: gensoft-gcc-9.2.0, libc6, gensoft-openmpi-4.0.5 Filename: pool/main/gensoft-libneurosim-1.0.0_1.0_amd64.deb Size: 229362 MD5sum: fbd4f4ba721a9613632d9bb0d79ecb25 SHA1: f596f7d4be930cfefb076eba5bf262425aeefef2 SHA256: 4b9481eefbc561c0c1a761badf6fe3e9d8b6be694c059ce88c2bd02c1b5040a2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a general library that provides interfaces and common utility code for neuronal simulators License: unknown Vendor: Institut Pasteur Package: gensoft-libogg-1.3.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 588 Depends: libc6 Filename: pool/main/gensoft-libogg-1.3.4_1.0_amd64.deb Size: 271334 MD5sum: c7296aeba16c4e75faed8d8337b6ecf9 SHA1: 21275ca8fa8d116c00ea1fbb49b7c10d965f0e9b SHA256: 9c0300cae6a373c00abe7cccedd7ab4e1c2947aee6582a8591575c7930df6ed2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Libogg contains necessary functionality to create, decode, and work with Ogg bitstreams License: unknown Vendor: Institut Pasteur Package: gensoft-libpng-1.6.37 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3566 Depends: zlib1g, libc6 Filename: pool/main/gensoft-libpng-1.6.37_1.0_amd64.deb Size: 1139752 MD5sum: b69476cd61cc6334ed7694798f8b7235 SHA1: 3aed61a298b8f6f1618feeebadb3b90265ef3039 SHA256: fea3deaaed98a046cc7d3a4fb1ae593fdd35562229010a62dd75be90a925f993 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: libpng is the official PNG reference library. License: unknown Vendor: Institut Pasteur Package: gensoft-librsvg-2.50.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 323378 Depends: libfribidi0, gensoft-cairo-1.17.4, gensoft-xorg-libs-1.1, libc6, libgcc-s1, gensoft-expat-2.2.9, libmount1, libselinux1, gensoft-libiconv-1.16, zlib1g, gensoft-pixman-0.38.4, gensoft-xz-5.2.4, gensoft-libxml2-2.9.10, gensoft-gdk-pixbuf-2.42.2, gensoft-libffi-3.3, gensoft-pango-1.48.2, gensoft-pcre-8.43, libbz2-1.0, gensoft-freetype-2.10.1, gensoft-pcre2-10.34, libpcre2-8-0, gensoft-harfbuzz-2.6.7, gensoft-libpng-1.6.37, gensoft-glib-2.66.7, gensoft-fontconfig-2.13.91, libblkid1 Filename: pool/main/gensoft-librsvg-2.50.3_1.0_amd64.deb Size: 62551540 MD5sum: 4a7fbceed80cab0a2bd13376e3fa3b3e SHA1: 26867b4b7b7d848f24a0243c275beb6fa24d8d52 SHA256: 51af6f099f9ba0aed6c26bcf013e048c2ff95970ab92baad044a9ea25e98a98e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This is librsvg - A small library to render Scalable Vector Graphics (SVG), associated with the GNOME Project. License: unknown Vendor: Institut Pasteur Package: gensoft-libsigc++-2.10.4 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 16889 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-libsigc++-2.10.4_1.0_amd64.deb Size: 6110316 MD5sum: 086fff9266aeebfb706440b1c590a699 SHA1: 7a150af32554b052f71fede2141030d5708ca0fb SHA256: 0d755528892a3281e5f51411a3845d49787c779e0ec58195629c0ef0edafe7cc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The libsigc++ package implements a typesafe callback system for standard C++. License: unknown Vendor: Institut Pasteur Package: gensoft-libssh2-1.9.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3586 Depends: libssl1.1, libc6, zlib1g Filename: pool/main/gensoft-libssh2-1.9.0_1.0_amd64.deb Size: 1132684 MD5sum: 8c36870ccec2d86d4fa9523b1fc1840b SHA1: 8c5a743d97ae74a19b074b7bc442913584633435 SHA256: 788f6572a469afa635c05e630db376dd24dd62f08bb2d0983e00d4cffd834e6b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: the SSH library License: unknown Vendor: Institut Pasteur Package: gensoft-libstatgen-1.0.15 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 3799 Depends: libc6 Filename: pool/main/gensoft-libstatgen-1.0.15_1.0_amd64.deb Size: 1150906 MD5sum: c2d8a71cf846ceb98ede143e3a1f2a43 SHA1: 2b7409143c0fcee803f44c0ac95e67d3f3db6d14 SHA256: 478ffba71b97d2e00eead36e2c63e103d0467e7cee57c6ddd5b611607f33bf95 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Useful set of classes for creating statistical genetic programs. License: unknown Vendor: Institut Pasteur Package: gensoft-libsvm-324 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7025 Depends: gensoft-gcc-9.2.0, gensoft-gnuplot-5.2.8, gensoft-adm-python-2.7.17, libc6 Filename: pool/main/gensoft-libsvm-324_1.0_amd64.deb Size: 2179604 MD5sum: 877101a736df85594cbc60ca936c4d76 SHA1: 0b855dffc08ddec178231963799b5d50e4ed2720 SHA256: a67b5c30c3f966f993f032da80508c23f3d43c0f3045cb8547630cceb053a66d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Libsvm is a simple, easy-to-use, and efficient software for SVM classification and regression. It solves C-SVM classification, nu-SVM classification, one-class-SVM, epsilon-SVM regression, and nu-SVM regression. It also provides an automatic model selection tool for C-SVM classification. License: unknown Vendor: Institut Pasteur Package: gensoft-libsvm-325 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 7036 Depends: libc6, gensoft-gnuplot-5.2.8, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-libsvm-325_1.0_amd64.deb Size: 2180600 MD5sum: 08e70f563c0cc79b1ca8715966a3b3ca SHA1: 315e102daef90334bf134ea9278673d5e09faf7e SHA256: 8eb8125021599c5640fd7b6feef58379290d4317dc58568f52b658dfde4fa71a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Libsvm is a simple, easy-to-use, and efficient software for SVM classification and regression. It solves C-SVM classification, nu-SVM classification, one-class-SVM, epsilon-SVM regression, and nu-SVM regression. It also provides an automatic model selection tool for C-SVM classification. License: unknown Vendor: Institut Pasteur Package: gensoft-libsysconfcpu-0.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 56 Depends: libc6 Filename: pool/main/gensoft-libsysconfcpu-0.5_1.0_amd64.deb Size: 16606 MD5sum: 9bf4775ff4251228dd59a38fa1dbf898 SHA1: 089422a76078550192a625da40d202221371338d SHA256: 8447c4b238fba1a5e663bcbb54c5630f613cff31575918bb1929b19f17a59f8e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: libsysconfcpus is an LD_PRELOAD library that intercepts calls to sysconf(), and adjusts the responses for _SC_NPROCESSORS_CONF and _SC_NPROCESSORS_ONLN, which are used to determine the number of processors available (either configured or online) at runtime in a system. Unfortunately, some closed- source software assumes that all of these processors may be used for computation, which is an assumption that is frequently not true on multiuser and HPC systems. Thus, libsysconfcpus provides a simple, non-intrusive way of adjusting the behaviour of such software (when it is dynamically linked). License: unknown Vendor: Institut Pasteur Package: gensoft-libtiff-4.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 8607 Depends: gensoft-xz-5.2.4, gensoft-libdrm-2.4.100, gensoft-gcc-9.2.0, gensoft-freeglut-3.2.1, libc6, gensoft-expat-2.2.9, gensoft-libjpeg-turbo-2.0.4, gensoft-glu-9.0.1, zlib1g, gensoft-mesa-19.0.8, gensoft-xorg-libs-1.1 Filename: pool/main/gensoft-libtiff-4.1.0_1.0_amd64.deb Size: 2718980 MD5sum: cc7d1634dad42b7106623828c7793089 SHA1: f74d32c168a3f3bc3e214df04f3bee7bd0689dcd SHA256: d6d25a90632cd72434efff3ff9310c040df212f95b14fa043aa7b72976641541 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-libtool-2.4.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3670 Depends: libc6 Filename: pool/main/gensoft-libtool-2.4.6_1.0_amd64.deb Size: 906870 MD5sum: 164fbe99cfcd6684e9a709fae308bbca SHA1: 64a5b5013a099ae68ed7f30f0039cd04e68fe4b5 SHA256: 6ae743a181e18a4c5a963240a6a763533697731bc5609094743b19febfd54fb8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. License: unknown Vendor: Institut Pasteur Package: gensoft-libtree-2.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 2490 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-libtree-2.0_1.0_amd64.deb Size: 567202 MD5sum: 64d3cd7a69ba123ac4eafcbf1e79b787 SHA1: 3111f7705acc306fcdff56420c1ef4553e449547 SHA256: 08007d9dbc1de6a3af09ee5c7de7a7ccad47fdb15d9bca84f90bff2fcc77ecc3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ldd as a tree with an option to bundle dependencies into a single folder License: unknown Vendor: Institut Pasteur Package: gensoft-libunwind-1.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5578 Depends: libc6 Filename: pool/main/gensoft-libunwind-1.3.1_1.0_amd64.deb Size: 1501466 MD5sum: f9d75258bb5487447a02bd949311e9f5 SHA1: 134122d07e83c37985d0dd02952d0bfc67f9457f SHA256: e250ff6603e0d40a08c4854f8936bc8c06d6934867067de604873a74c4ac04da Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). License: unknown Vendor: Institut Pasteur Package: gensoft-libuuid-1.0.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 157 Depends: libc6 Filename: pool/main/gensoft-libuuid-1.0.3_1.0_amd64.deb Size: 48346 MD5sum: c7b26e45a20553610fe4e41145b15b18 SHA1: 4759a17a8a79421d2608bc79917bf011ff14ffc4 SHA256: 16c68d2395553370610052c62411a2e3a3885b73cc545d7c1b914059c8f8c9c1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-libvorbis-1.3.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2782 Depends: gensoft-libogg-1.3.4, libc6 Filename: pool/main/gensoft-libvorbis-1.3.7_1.0_amd64.deb Size: 720768 MD5sum: f7bcfb7d9d2faa548fd49c990e5ea0f7 SHA1: 2f0dcbb6cad9fd343ffbf77004a92d29fd70600a SHA256: 13c38c257e9ca49fa8e603e1d5099c51f3badb017f008147fd29b4bfc7f47f9b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Libvorbis contains the Vorbis reference encoder and decoder. 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License: unknown Vendor: Institut Pasteur Package: gensoft-libxkbcommon-0.8.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3725 Depends: gensoft-xorg-libs-1.1, libc6 Filename: pool/main/gensoft-libxkbcommon-0.8.4_1.0_amd64.deb Size: 1178678 MD5sum: 4b6cff7e9fce7e78bd8032c3e82a5980 SHA1: fc4e3532511d94ca94637020cf378d4c8e13c888 SHA256: b8fb4cffc486f116da670a039e727728f3b087bb5f148dfc68c8b9eaada81647 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: xkbcommon is a library for handling of keyboard descriptions, including loading them from disk, parsing them and handling their state. 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License: unknown Vendor: Institut Pasteur Package: gensoft-libxml2-2.6.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 16236 Depends: libreadline8, libtinfo5, libncurses5, zlib1g, libc6, gensoft-libiconv-1.16 Filename: pool/main/gensoft-libxml2-2.6.9_1.0_amd64.deb Size: 4454352 MD5sum: 35946b7da4433218697fd0b4e55d3b3f SHA1: 3b12a4fefa9b5ab5d313f218b3c46bd9499844c2 SHA256: f3213e28eb3c512aa0407bda2eaf18d286c863f847954b827746510f47c6c5eb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Libxml2 is the XML C parser and toolkit developed for the Gnome project License: unknown Vendor: Institut Pasteur Package: gensoft-libxml2-2.9.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 28648 Depends: libc6, gensoft-xz-5.2.4, libncurses5, libreadline8, gensoft-libiconv-1.16, zlib1g, libtinfo5, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-libxml2-2.9.10_1.0_amd64.deb Size: 7275186 MD5sum: 8255d29433e060888979b80eb283c68d SHA1: c90d470c3466a9684ed1e6c0efbac2bbc006fa1b SHA256: 83a5bdd17cb5c271f9d613439de4e17ef166432873494b9fc3b822aac48eab1a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Libxml2 is the XML C parser and toolkit developed for the Gnome project License: unknown Vendor: Institut Pasteur Package: gensoft-libxslt-1.1.34 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7181 Depends: gensoft-xz-5.2.4, libc6, gensoft-adm-python-2.7.17, zlib1g, gensoft-libxml2-2.9.10, gensoft-libiconv-1.16 Filename: pool/main/gensoft-libxslt-1.1.34_1.0_amd64.deb Size: 2073250 MD5sum: fc160c908d26159cd0b0716df32cc0cb SHA1: 0f7dd8e33fb8e721cd3968fa51b04790ae0ee058 SHA256: de27226539dbba28598c8a50a448526ebe7c826db3e5fdeb2a01771579c01815 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Libxslt is the XSLT C library developed for the GNOME project License: unknown Vendor: Institut Pasteur Package: gensoft-libyaml-0.2.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2520 Depends: libc6 Filename: pool/main/gensoft-libyaml-0.2.2_1.0_amd64.deb Size: 586748 MD5sum: 168ab72dfbe2fbcdbecc077fb3a2bc06 SHA1: 8d778c46b3e40537be3041e40ea9683c2ac24b20 SHA256: 1909536f68d7bf0cf027000aa12c6748a48d5531540e9519461c61ee30b92528 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LibYAML is a YAML 1.1 parser and emitter written in C. 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License: unknown Vendor: Institut Pasteur Package: gensoft-lighter-1.1.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 89 Depends: zlib1g, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-lighter-1.1.2_2.0_amd64.deb Size: 44864 MD5sum: ca6c77a1da773d083e8f8d669c6cc64d SHA1: 1af056acc0fb1fbe80971cf44bd4ccc969b74f37 SHA256: 3ab73197932b26db333531e69cb57316f42f91e1999e5f2ee0135e0392ad5bc6 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Lighter is a kmer-based error correction method for whole genome sequencing data. Lighter uses sampling (rather than counting) to obtain a set of kmers that are likely from the genome. Using this information, Lighter can correct the reads containing sequence errors. License: unknown Vendor: Institut Pasteur Package: gensoft-likelybin-0.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 919 Depends: libc6 Filename: pool/main/gensoft-likelybin-0.1.0_1.0_amd64.deb Size: 303184 MD5sum: 35c1d8ae8d56de63762abaecad18c790 SHA1: dff9829e240edf2279814075d1d7537a260af50e SHA256: 0b67de93f6d449170ea8587a1092a4723a2ab4f3003f747214289ae326f62df8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LikelyBin is an unsupervised metagenomic binner License: unknown Vendor: Institut Pasteur Package: gensoft-likwid-5.0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 16356 Depends: gensoft-adm-perl-5.30.1, libc6 Filename: pool/main/gensoft-likwid-5.0.2_1.0_amd64.deb Size: 1626358 MD5sum: 807530a2003698d7d4ffa1652a2b6803 SHA1: 3c109547bff0c730249ae403d9aded34ebb08f7a SHA256: aa741123540b4554bf7f354bafb58e5d859581d62ac4acae734a12e534302918 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: toolsuite of command line applications for performance oriented programmers. 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License: unknown Vendor: Institut Pasteur Package: gensoft-likwid-5.2.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 20503 Depends: libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-likwid-5.2.1_1.0_amd64.deb Size: 1805246 MD5sum: a94f9fff17719ebaade29d2e56bad178 SHA1: 9d7247402b94ed2577d8495a7f541f8e327bb9e6 SHA256: 59d459d3af92064160d3d006f64857a752a87abdf592176b91d195827660b870 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: toolsuite of command line applications for performance oriented programmers. License: unknown Vendor: Institut Pasteur Package: gensoft-lima-2.5.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 5555 Depends: libc6 Filename: pool/main/gensoft-lima-2.5.0_1.0_amd64.deb Size: 2439694 MD5sum: 26d3235d76036f3991cbb1ba40a19efc SHA1: 6ae9479f5ad052ec844ef02939b4e189f2740d66 SHA256: 3c933169f866ac12ed1735e1c757ce3ffbfb1b7fc753002ca2131d6f0f65d248 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads) License: unknown Vendor: Institut Pasteur Package: gensoft-llama.cpp-b2435 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5640930 Depends: gensoft-gcc-9.2.0, libstdc++6, zlib1g, gensoft-cuda-11.7, libc6, libgcc-s1 Filename: pool/main/gensoft-llama.cpp-b2435_1.0_amd64.deb Size: 3097894222 MD5sum: 3bc56464e08efa895b6e31e6a74d81eb SHA1: cd18bf5f33348d7058592d1d87070c39bfde528f SHA256: 5e7350378da95e524bd4222ab8611d05953272998cdcdce2a80fdfea6832d976 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Inference of Meta LLaMA model (and others) in pure C/C++ License: unknown Vendor: Institut Pasteur Package: gensoft-llvm-10.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 852734 Depends: gensoft-libffi-3.2.1, gensoft-xz-5.2.4, gensoft-libiconv-1.16, libc6, gensoft-git-2.25.0, libtinfo6, gensoft-libxml2-2.9.10, gensoft-adm-python-2.7.17, gensoft-adm-perl-5.30.1, gensoft-z3-4.8.9, gensoft-gmp-6.2.0, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-llvm-10.0.0_1.0_amd64.deb Size: 215493970 MD5sum: c91ff4fea9cc712f0964e4f7bd3a5a36 SHA1: d08d525ef9879167228ec82d90fa21c2e11f057d SHA256: a985007f3dcbdd0be073a3b70c14fe472274f1401a92050e760410de9d3ec480 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. 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License: unknown Vendor: Institut Pasteur Package: gensoft-lofreq-2.1.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 201790 Depends: gensoft-samtools-1.10, gensoft-xz-5.2.4, gensoft-curl-7.68.0, gensoft-adm-python-2.7.17, gensoft-htslib-1.10 Filename: pool/main/gensoft-lofreq-2.1.4_1.0_amd64.deb Size: 65563298 MD5sum: 638fe5e569440d4bdf12a8b37c8a9a9a SHA1: 59d237cbabd053cbd0ba30539df132acadcfda0f SHA256: 43019df8bec5b1b838a222c4aad5cdd8fb10d2965e5c4c90a6ad52734e40a599 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-loki-2.4.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3804 Depends: libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-loki-2.4.5_1.0_amd64.deb Size: 1564060 MD5sum: b0e60de98bcf06a85a8de343ceaf36e4 SHA1: baf7186f14a2f727cd9fcb18e8fdbc0800eb6eac SHA256: d44a8181dcb206055a1abcef1601b9fc00f0a661b9d6da47415f1f6ae16fe03e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Manipulation Environment for Genetic Analyses License: unknown Vendor: Institut Pasteur Package: gensoft-lordec-0.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 35104 Depends: zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-lordec-0.9_1.0_amd64.deb Size: 10046134 MD5sum: 4b774b7c2dea0f1e98aaef8ba84ab57b SHA1: 6b4b67eef66f11e89c2c72dabb672e6e3594edf4 SHA256: e12577be42d5ba7f711ae2774d4013058ece5f12f973f2926669957b32f4e4b3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Program for correcting sequencing errors in PacBio reads using highly accurate short reads License: unknown Vendor: Institut Pasteur Package: gensoft-louvain-0.3 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 189 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-louvain-0.3_1.0_amd64.deb Size: 69940 MD5sum: 6d3edb7046cb61f9659c60ce20b24895 SHA1: b6167250ef655f731f2534bb01d535bd63447d0d SHA256: 45685476e0ce851fbfca6ed55f32ad0135d23ad645bf24a04c58f21283046d79 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: An implementation of the Louvain method for community detection in large graphs. License: unknown Vendor: Institut Pasteur Package: gensoft-lp-solve-5.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2022 Depends: libc6 Filename: pool/main/gensoft-lp-solve-5.5_1.0_amd64.deb Size: 810244 MD5sum: b79c055ec68ba4251a83f248eb6c8fdf SHA1: f6932cce5a5cbc7c75fbefeab9fca70f6ec0d1bc SHA256: 6fa313fc3ffdffa6c78aab51e2ae2267b141a10e4e88a5918fc4fd9b79777d5b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: lp_solve is a Mixed Integer Linear Programming (MILP) solver. License: unknown Vendor: Institut Pasteur Package: gensoft-lrge-0.1.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2339 Depends: gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-lrge-0.1.3_1.0_amd64.deb Size: 1048864 MD5sum: 7b80f60f57cf179bc29997352b8bdd27 SHA1: ddf3be381a2c3a24de32e2debdcfce3011801eba SHA256: b06e8960ab9789e1dcfd46c6b7990b4d5f24fc2757de82bc140c6a74e4c020cc Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Long Read-based Genome size Estimation from overlaps. LRGE (pronounced large) is a command line tool for estimating genome size from long read overlaps. The tool is built on top of the liblrge Rust library, which is also available as a standalone library for use in other projects. License: unknown Vendor: Institut Pasteur Package: gensoft-ls-bsr-1.03 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 96238 Depends: gensoft-cd-hit-4.8.1, gensoft-blat-36, gensoft-adm-python-2.7.17, gensoft-prodigal-2.6.3.pp1, gensoft-blast+-2.10.0, gensoft-vsearch-2.14.2 Filename: pool/main/gensoft-ls-bsr-1.03_2.0_amd64.deb Size: 25927486 MD5sum: caa7527478da598c7b9d6508e1fe2761 SHA1: 092474d38a83a137418b4536a2be0ebf197ad036 SHA256: e5eb60f3b3a2c116adba5203b9766f81a3045b25a42ae0980e14b1ab43c3555a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Large scale blast score ratio (LS-BSR). LS-BSR is a method to compare open reading frames betweeen a set of bacterial isolates. The result of the script is a matrix that can be easily parsed to compare the genetic content between groups. License: unknown Vendor: Institut Pasteur Package: gensoft-lsd2-1.9.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1438 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-lsd2-1.9.7_1.0_amd64.deb Size: 478024 MD5sum: 7d36a35d6082a38cf5894acc29965c1f SHA1: 4fbb6adfa5d7851c3546c826b59b286e652270fc SHA256: b8355b5a2c6dae0c9b6639623326abd67f5928efab28efff09ebc8ad3a74bfaf Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LEAST-SQUARES METHODS TO ESTIMATE RATES AND DATES FROM PHYLOGENIES License: unknown Vendor: Institut Pasteur Package: gensoft-lsd2-2.3 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1467 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-lsd2-2.3_1.0_amd64.deb Size: 489086 MD5sum: 12929d8f0432b5f4291184d7aa27a737 SHA1: 4357e50705efdb7526c7ee60abd3b6c61d57c6b4 SHA256: 0d7c9a581017c28c149e5edaa6c95ca3a26fb32c09ae30c37da5fc77924b40bc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LEAST-SQUARES METHODS TO ESTIMATE RATES AND DATES FROM PHYLOGENIES License: unknown Vendor: Institut Pasteur Package: gensoft-ltr-retriever-2.9.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 56983 Depends: gensoft-blast-2.2.26, gensoft-cd-hit-4.8.1, gensoft-adm-perl-5.30.1, gensoft-blast+-2.10.0, gensoft-repeatmasker-4.1.0, gensoft-hmmer-3.2.1 Filename: pool/main/gensoft-ltr-retriever-2.9.0_1.0_amd64.deb Size: 28179770 MD5sum: 30018448a255268a361f460d04b3cc58 SHA1: edada4ce359c361ad30c83f80c8e3cec53dbcd4a SHA256: bc716fc079d30df053b48511eb9e8f0293fabf5c01a370d14ea75f1ddefb30f3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons.The LTR Assembly Index (LAI) is also included in this package License: unknown Vendor: Institut Pasteur Package: gensoft-ltr-retriever-3.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 56994 Depends: gensoft-repeatmasker-4.1.0, gensoft-adm-perl-5.30.1, gensoft-cd-hit-4.8.1, gensoft-blast+-2.16.0, gensoft-blast-2.2.26, gensoft-tesorter-1.4.7, gensoft-hmmer-3.4 Filename: pool/main/gensoft-ltr-retriever-3.0.1_1.0_amd64.deb Size: 28183582 MD5sum: e0205703a26885d8dacf67b969f2c006 SHA1: f9cf28574a1c0965c0c54a6479ed25a98b3a09fa SHA256: ed57007d9784a9a73d7ba708e8f4cbec110883b80160926198f0dcaaf766b6bf Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons.The LTR Assembly Index (LAI) is also included in this package License: unknown Vendor: Institut Pasteur Package: gensoft-lua-5.1.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1236 Depends: libtinfo5, libreadline8, libc6, libncurses5 Filename: pool/main/gensoft-lua-5.1.4_1.0_amd64.deb Size: 461350 MD5sum: ddf93571aa6086d4790dff8e972e0d62 SHA1: 90f8e867c74d6d34793ad238222f5a5ebdc3b9c0 SHA256: d9282d8801759a1d911af5af6672297d53609e772f8e28c48cdfbcf66b4ebe4f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping. License: unknown Vendor: Institut Pasteur Package: gensoft-lua-5.3.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1547 Depends: libc6, libncurses5, libtinfo5, libreadline8 Filename: pool/main/gensoft-lua-5.3.5_1.0_amd64.deb Size: 579854 MD5sum: 18811fa46af46151ec0fbbf31ecf7129 SHA1: 80d64970955210c1d849e37bf333d8903fcc9aef SHA256: fb1a4dd5f2f55956a092a249bbd91222685b48668cc125c542374c69871d05d6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping. License: unknown Vendor: Institut Pasteur Package: gensoft-lumpy-sv-0.3.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 216337 Depends: gensoft-gcc-9.2.0, libssl1.1, gensoft-adm-python-2.7.17, gensoft-curl-7.68.0, libc6, gensoft-samtools-1.10, gensoft-htslib-1.10, libbz2-1.0, gensoft-xz-5.2.4, gensoft-adm-perl-5.30.1, gensoft-samblaster-v.0.1.24, zlib1g Filename: pool/main/gensoft-lumpy-sv-0.3.0_1.0_amd64.deb Size: 64428444 MD5sum: 463c0c8f6814b3bc4db1d0ffbcfa8e02 SHA1: 76b5c854a17b0118fce9db221c8f4e581831a0b5 SHA256: b77696013e38656d105fdff45213de8a737b4709f8e1180552fddb6be1c123c5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A probabilistic framework for structural variant discovery. License: unknown Vendor: Institut Pasteur Package: gensoft-lumpy-sv-0.3.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 226206 Depends: gensoft-samtools-1.10, libc6, libbz2-1.0, gensoft-gcc-9.2.0, gensoft-adm-perl-5.30.1, libssl1.1, libstdc++, gensoft-xz-5.2.5, gensoft-htslib-1.10, gensoft-samblaster-v.0.1.24, gensoft-adm-python-2.7.17, bsdmainutils, libgcc-s1, zlib1g, gensoft-bamkit-0.0.1, gensoft-sambamba-0.7.1, gensoft-curl-7.68.0 Filename: pool/main/gensoft-lumpy-sv-0.3.1_1.0_amd64.deb Size: 67668630 MD5sum: 5f5b81c16c7ed9492bc220c4d2b33ab3 SHA1: 91fea428611fe6daa32a37ed556579d22ca82338 SHA256: 230c9b4b5bd090eca4a2fd1af4fc6365e7529c284fb836e4ba533e671e00e79d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A probabilistic framework for structural variant discovery. License: unknown Vendor: Institut Pasteur Package: gensoft-lz4-1.9.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 848 Depends: libc6 Filename: pool/main/gensoft-lz4-1.9.2_1.0_amd64.deb Size: 355798 MD5sum: 6fbd70178df43615ceba694b9933dd19 SHA1: 60f5e9cda36cf6c748e95b8962edfcc1067e6389 SHA256: 17a3da911d36f8e99f3433a1900844726e727a4b03ccab41d924831cbabfda6d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LZ4 is lossless compression algorithm License: unknown Vendor: Institut Pasteur Package: gensoft-lz4-1.9.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2185 Depends: libc6 Filename: pool/main/gensoft-lz4-1.9.4_1.0_amd64.deb Size: 682398 MD5sum: 24983e25ce52ff6b569b034557fd4ac1 SHA1: 85b63b1b6c528b4f704604f961934a1c76751a90 SHA256: 4087313174a091463272823a36a3368b8e77ec60f44337f2e65e8a4936acfb04 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LZ4 is lossless compression algorithm License: unknown Vendor: Institut Pasteur Package: gensoft-lzip-1.22 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 215 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-lzip-1.22_1.0_amd64.deb Size: 86986 MD5sum: aa3790818c2bcd59a8a79d846921f319 SHA1: 8f107c9245be6ba2fdb4746ba1d4edc34e4b1e47 SHA256: 5f82a57144317c0ebc984c60acbe8e12199ddc8e61c6c67f5eff21b0eaa085f8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a lossless data compressor with a user interface similar to the one of gzip or bzip2 License: unknown Vendor: Institut Pasteur Package: gensoft-lzlib-1.12 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 223 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-lzlib-1.12_1.0_amd64.deb Size: 88238 MD5sum: 5c410c73de3f4ccb8283c06e51fbf706 SHA1: e4d53db4bcb52d25e6df67f02528fee66f8805e9 SHA256: 6bad35a6fa82f5f1139cff267f421c4d2751ef7d6df02dec8c454a34ee0ddbff Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Lzlib is a data compression library providing in-memory LZMA compression and decompression functions, including integrity checking of the decompressed data License: unknown Vendor: Institut Pasteur Package: gensoft-lzo-2.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2527 Depends: libc6 Filename: pool/main/gensoft-lzo-2.10_1.0_amd64.deb Size: 612994 MD5sum: ebc450fc62fb87fd04f889271186a619 SHA1: bbcbb84d0cbd33ac780c08d0dfdb0f3f502b7fa9 SHA256: 117dbcaa3b9a1f5d497af71c9806da0da674fb1e8d196b4fd16bb5b882e6ebe7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: LZO is a portable lossless data compression library written in ANSI C. License: unknown Vendor: Institut Pasteur Package: gensoft-lzop-1.04 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 363 Depends: libc6, gensoft-lzo-2.10 Filename: pool/main/gensoft-lzop-1.04_1.0_amd64.deb Size: 127712 MD5sum: 82537e7bc26c22a0f3fc75fa5f899c47 SHA1: b4888ae46410566c88945c0a0ad7fce9bc84f821 SHA256: 5abe5a8e0a91b1b719f1553b0114e8ccc5a985afff549c4cfada73227871cd4b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: lzop is a file compressor very similar to gzip. lzop favors speed over compression ratio. License: unknown Vendor: Institut Pasteur Package: gensoft-m4-1.4.18 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1931 Depends: gensoft-adm-perl-5.30.1, libc6 Filename: pool/main/gensoft-m4-1.4.18_1.0_amd64.deb Size: 536426 MD5sum: 024b3d9df49d0bd90e9ca02e97978353 SHA1: be49893d5f1d8218ce4abbc95fb7ff9b4fc26915 SHA256: 512f9805631bab21252f94371153d038c18e90acf48ec8b0edd544ebbe684050 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GNU M4 is an implementation of the traditional Unix macro processor. GNU M4 is a macro processor in the sense that it copies its input to the output expanding macros as it goes. License: unknown Vendor: Institut Pasteur Package: gensoft-mach-1.0.18 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 728 Depends: gensoft-gcc-9.2.0, libc6, zlib1g Filename: pool/main/gensoft-mach-1.0.18_1.0_amd64.deb Size: 321982 MD5sum: 101f372b97bd624a31b37c66b4567119 SHA1: a70d79c4dcc941e3a28d877b96b9021375f9f8cb SHA256: dbcdc3f95854ec9fbd42cd2602013329e7cbd6444d186a042a28e1126d7536bc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A Markov Chain based haplotyper. It can resolve long haplotypes or infer missing genotypes in samples of unrelated individuals License: unknown Vendor: Institut Pasteur Package: gensoft-macs-2.2.6 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 83487 Depends: libc6, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-macs-2.2.6_2.0_amd64.deb Size: 25467676 MD5sum: a5af5ec633ae923bf6bf1bbf762267bf SHA1: 99347f9459c945c15a45ca7f7b5d4d78468f20c4 SHA256: 2d09dbe4a618a38c81c3ef74cc61bedcbb86d011e1fd9b2059c3c0e8c807ca07 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Model-based Analysis of ChIP-Seq License: unknown Vendor: Institut Pasteur Package: gensoft-macs-3.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 281263 Depends: gensoft-adm-python-3.10.7, libc6 Filename: pool/main/gensoft-macs-3.0.1_1.0_amd64.deb Size: 89277004 MD5sum: a3bd23f593ad600d4b00ee4cc2812d4f SHA1: 9ffb5363c490cacbe5a59029a9b628c8bf0cab73 SHA256: 2b811cf3cbfd7844d656a0b1f0074d7cf438c2b786d32a19319fc39e34878c3e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Model-based Analysis of ChIP-Seq License: unknown Vendor: Institut Pasteur Package: gensoft-macsyfinder-1.0.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 92978 Depends: gensoft-blast+-2.2.31, gensoft-adm-python-2.7.17, gensoft-hmmer-3.3 Filename: pool/main/gensoft-macsyfinder-1.0.5_1.0_amd64.deb Size: 18837934 MD5sum: 479f0b69728fd8c1336d0a24b7bdf83b SHA1: b05183721280e5fc436c633ed359bdb487b8efc1 SHA256: e390e11d92ff4af3ed470cc9835284d009e4145c70a557b075735ac93368ccdc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Detection of macromolecular systems in protein datasets using systems modelling and similarity search. License: unknown Vendor: Institut Pasteur Package: gensoft-macsyfinder-2.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 199357 Depends: gensoft-hmmer-3.3.2, libstdc++6, libc6, gensoft-adm-python-3.10.7, zlib1g, libgcc-s1 Filename: pool/main/gensoft-macsyfinder-2.0_1.0_amd64.deb Size: 75065028 MD5sum: fb53b3d5e765a2a66fc02825dce288a1 SHA1: b7f4e69fb4e2c3cdb84982285359133d19d6f3b6 SHA256: f0561a2322a0caf61aa38629cda769dc5915abafd9b14d079c26e5541612ecb5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Detection of macromolecular systems in protein datasets using systems modelling and similarity search. 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License: unknown Vendor: Institut Pasteur Package: gensoft-macsyfinder-2.1.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 207965 Depends: zlib1g, libc6, libstdc++6, libgcc-s1, gensoft-hmmer-3.3.2, gensoft-adm-python-3.10.7 Filename: pool/main/gensoft-macsyfinder-2.1.2_1.0_amd64.deb Size: 77391722 MD5sum: 5c2a29088d2da42affb73312553aff6d SHA1: 869e7d2de134bca7572f62edcf3229167d53aef3 SHA256: 2ad47537a83dc43b8ce43a34d9e6ee922d3b724c1efbe6d7e72265716ebc05b5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Detection of macromolecular systems in protein datasets using systems modelling and similarity search. 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License: unknown Vendor: Institut Pasteur Package: gensoft-macsyfinder-2.1.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 199203 Depends: zlib1g, libstdc++6, gensoft-adm-python-3.10.7, libgcc-s1, libc6, gensoft-hmmer-3.3.2 Filename: pool/main/gensoft-macsyfinder-2.1.4_1.0_amd64.deb Size: 75800570 MD5sum: 143fa5a1fed5fe3d283d7ff2645d8e08 SHA1: 01b5dc14608232b9d9bb8a9be344889e77f2ad02 SHA256: 5fdbeeeb53e114c48d1ce93194578bf09a252a4b788ae7e0f5634fabb10ed1bd Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Detection of macromolecular systems in protein datasets using systems modelling and similarity search. License: unknown Vendor: Institut Pasteur Package: gensoft-madroot-1775932 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 57 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-madroot-1775932_1.0_amd64.deb Size: 24236 MD5sum: 2a7542de80b2e9a7e3b467dc44edf545 SHA1: 46440658e5d5f2b406eef8627482b0380bda2c1b SHA256: 1065188424897786b611ef856fb0bbf3b704383084c3d8b648826a4c0177d39b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Efficient implementation of the MAD method for inferring the location of the root in a large phylogeny. 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License: unknown Vendor: Institut Pasteur Package: gensoft-magicblast-1.5.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 27689 Depends: gensoft-gcc-9.2.0, libc6, gensoft-libiconv-1.16, libbz2-1.0, zlib1g, gensoft-xz-5.2.4, gensoft-libxml2-2.9.10 Filename: pool/main/gensoft-magicblast-1.5.0_1.0_amd64.deb Size: 10784374 MD5sum: f1d6c71e69ae438057cc6b2362903e1b SHA1: 23a796a1aeb8a6fbaf2429da9ddb0b9ad5b60c07 SHA256: 9aabc7d181f1bb273a9683988169980c74a27a7ab41148c5536451d60d41a649 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. 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License: unknown Vendor: Institut Pasteur Package: gensoft-malt-0.4.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 30755 Depends: gensoft-java-1.8.0 Filename: pool/main/gensoft-malt-0.4.1_2.0_amd64.deb Size: 29714030 MD5sum: 82758488dd3780debc87a365c2a0e87f SHA1: 19a03961b2c1ff9ea49073fc69ba66f787438d29 SHA256: 45fcb8c08c260765c88e2167f1696afc1ea426fc4440634793852508d68b0776 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MALT is a sequence aligner especially designed for metagenomics. License: unknown Vendor: Institut Pasteur Package: gensoft-malt-0.5.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 324252 Filename: pool/main/gensoft-malt-0.5.3_2.0_amd64.deb Size: 155379804 MD5sum: aaf06ab3f209d12dc043919cdf889008 SHA1: 7dcbb74dc7fa4173542fc74060097360c7a0d2d4 SHA256: 3427d5fed13874755856f96f295a1846f9f55192f99192003a6e248bf76d6506 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MALT is a sequence aligner especially designed for metagenomics. License: unknown Vendor: Institut Pasteur Package: gensoft-manta-1.6.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 464001 Depends: gensoft-adm-python-2.7.17, zlib1g, libc6 Filename: pool/main/gensoft-manta-1.6.0_1.0_amd64.deb Size: 57161150 MD5sum: 54b32e9759ddf122380ce82b71e996e4 SHA1: 4b8ac90d1df04ec2e9be41be319e7f8f00b8bcce SHA256: daf13d67b216a96cadb767fe4ba612222a3e3cb6e4cd533e485cd759dde4ea25 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels and large insertions within a single efficient workflow License: unknown Vendor: Institut Pasteur Package: gensoft-map2cov-4.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6643 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-map2cov-4.6_1.0_amd64.deb Size: 2014094 MD5sum: 569297cefec773fc55cb4da62748c7e8 SHA1: 58530f6b4dc6a708a4a9c606b5b35b62b3240320 SHA256: 0709d01c0ff9e4c69e65bd80348b4e2b769deb2c2ce5c98b52170d10421588cb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Convert mapping data into coverage format readable by the COV2HTML interface License: unknown Vendor: Institut Pasteur Package: gensoft-mapdamage-2.2.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 124805 Depends: gensoft-adm-python-3.8.1, gensoft-r-4.2.1, zlib1g, libc6, gensoft-gsl-2.6 Filename: pool/main/gensoft-mapdamage-2.2.0_1.0_amd64.deb Size: 48728782 MD5sum: 215fe5616a9a712df271dfb3226c8528 SHA1: 636b5c3fab59558a2a373b0d5da694153b3ea3fe SHA256: c0385bd6dd76ec53ff23dfa55e930d04e8d1bf796adf0e5fbd66ec0e041e9fd1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms. License: unknown Vendor: Institut Pasteur Package: gensoft-maq-0.7.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1769 Depends: gensoft-gnuplot-5.2.8, zlib1g, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-maq-0.7.1_1.0_amd64.deb Size: 755416 MD5sum: 49fcf9d04a742701a09ecfa8d7b09fef SHA1: 364b042c7ea2ba770befa7aad96cb08deaa2d8d5 SHA256: 0913ccb4478bd3a0dafb32417187e900c26be2570bbe5ac78b2145893a4b963e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Builds mapping assemblies from short reads generated by the next-generation sequencing machines License: unknown Vendor: Institut Pasteur Package: gensoft-maqview-0.2.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1723 Depends: gensoft-glu-9.0.1, gensoft-libdrm-2.4.100, gensoft-freeglut-3.2.1, gensoft-xorg-libs-1.1, libc6, gensoft-mesa-19.0.8, gensoft-gcc-9.2.0, gensoft-expat-2.2.9 Filename: pool/main/gensoft-maqview-0.2.5_1.0_amd64.deb Size: 654176 MD5sum: 34c99a4077170275fc5f2a38af08c141 SHA1: dfc5bf4d2477160ccdaf7dee2a309cc90fd1041c SHA256: 47f7c7f07326913a04eb16e545a4bba19e87e56d54a7eaae477e580023a78312 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Maqview is graphical read alignment viewer. 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License: unknown Vendor: Institut Pasteur Package: gensoft-mash-2.2 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2508 Depends: libc6, zlib1g, gensoft-gsl-2.6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-mash-2.2_3.0_amd64.deb Size: 815940 MD5sum: a2913093da363edcaafa069d31a11750 SHA1: 1ed788507c5fb45232afdc0fe59b125feb410efe SHA256: be61737fe0802612b7a408fd16c9f7a21ad97ecb2ee614e20860e88a81f174a3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Mash is a fast sequence distance estimator that uses the MinHash algorithm and is designed to work with genomes and metagenomes in the form of assemblies or reads. License: unknown Vendor: Institut Pasteur Package: gensoft-mash-2.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2898 Depends: libc6, gensoft-gcc-9.2.0, gensoft-gsl-2.6, zlib1g Filename: pool/main/gensoft-mash-2.3_2.0_amd64.deb Size: 949808 MD5sum: dd54525c8514b04f3a6ed5d34d1f3ed9 SHA1: c8347204b4f419963dc4673c98a7c5f3ac3d8a72 SHA256: 4d9ddc6d6fe8655e58c1f4c28a9c85d23380c963ccdffa98cd9274883ab191fb Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Mash is a fast sequence distance estimator that uses the MinHash algorithm and is designed to work with genomes and metagenomes in the form of assemblies or reads. License: unknown Vendor: Institut Pasteur Package: gensoft-masurca-4.1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 384953 Depends: libc6, gensoft-bwa-0.7.17, zlib1g, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0, libbz2-1.0, csh Filename: pool/main/gensoft-masurca-4.1.0_1.0_amd64.deb Size: 128241312 MD5sum: 7c1817022869247d0e03d76b53c4c7ef SHA1: bd9a12f100809dd5b56c53485ead4a28df8972fd SHA256: 94941806194a7500683ba8e5fb36a28fca62d46f9cd07c92eddc7374e73b7ad0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Whole genome assembly software. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454). License: unknown Vendor: Institut Pasteur Package: gensoft-matlab-r2020b Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12621528 Filename: pool/main/gensoft-matlab-r2020b_2.0_amd64.deb Size: 6954434714 MD5sum: ed48876d441aee89ed08ca37fabb9ca3 SHA1: dd46dcba285eef7a1e080acb327b8c027de6976f SHA256: 0cf946117f8024b26851a440214b5befd6e3956880d4c03b17fa82b979ce179b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a high-level language and interactive environment for numerical computation, visualization, and programming License: unknown Vendor: Institut Pasteur Package: gensoft-matlab-r2021b Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 13412817 Filename: pool/main/gensoft-matlab-r2021b_2.0_amd64.deb Size: 7119062610 MD5sum: aa4dc7efb55b95dd02cf9796ea76243c SHA1: 8871b563ecc6019cce5d24c29c1cfae4b2a57e10 SHA256: 40845fa092744b5994906a5843d4826caaa33b703531f86e105fcd540ab38d0a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a high-level language and interactive environment for numerical computation, visualization, and programming License: unknown Vendor: Institut Pasteur Package: gensoft-matlab-r2022a Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 13323079 Filename: pool/main/gensoft-matlab-r2022a_2.0_amd64.deb Size: 7236228764 MD5sum: b66e9792ef01ee2325559f1982430faf SHA1: e0f05e56475f93d8d4aba65d52da3137dcedcbc7 SHA256: 88f58accde65b455a21c38b83af1a1735112fc945ccf00665b08c217aafc4a36 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a high-level language and interactive environment for numerical computation, visualization, and programming License: unknown Vendor: Institut Pasteur Package: gensoft-mauve-2.4.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7645 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-mauve-2.4.0_1.0_amd64.deb Size: 6485808 MD5sum: 169c548893b0123e98d54f348f75073c SHA1: aff587a914d6d66b6277774c0dac953e67054b46 SHA256: cc57066cd3522db3ae440e92233f2fb4c936ae3eabbec0adc7825465fe0588ba Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: System for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion License: unknown Vendor: Institut Pasteur Package: gensoft-mauvealigner-r4736 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 53590 Depends: gensoft-xz-5.2.4, libc6, gensoft-boost-1.72.0, gensoft-zstd-1.4.4, gensoft-gcc-9.2.0, libbz2-1.0, zlib1g Filename: pool/main/gensoft-mauvealigner-r4736_1.0_amd64.deb Size: 12627228 MD5sum: bb0faaf96636f56ffbdb639fc40d4122 SHA1: 708c195a88db7803c064bdd62d9017487240fd84 SHA256: 29c0bed7021195407a57931ad61b7d6248ab2d87edc616cfef8ae4aed5a41ca8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: mauveAligner and progressiveMauve alignment algorithms have implemented as command-line programs that provide options not yet available in the graphical interface. License: unknown Vendor: Institut Pasteur Package: gensoft-mawk-1.3.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 694 Depends: libc6 Filename: pool/main/gensoft-mawk-1.3.4_1.0_amd64.deb Size: 269270 MD5sum: 970a7a9235547203a0309cd2edf874a0 SHA1: 08abaa5ba440ba2d9acd61416bb6ddf4457ce03b SHA256: f365fbc879fffe25901c980adb7b2eb86df77fd304bfbad45ed2c941b72cc809 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an interpreter for the AWK Programming Language. License: unknown Vendor: Institut Pasteur Package: gensoft-maxbin-2.2.7 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 21961 Depends: gensoft-gcc-9.2.0, libc6, gensoft-hmmer-3.3, gensoft-fraggenescan-1.31, gensoft-adm-perl-5.30.1, gensoft-bowtie2-2.3.5.1, gensoft-idba-1.1.3 Filename: pool/main/gensoft-maxbin-2.2.7_2.0_amd64.deb Size: 4461828 MD5sum: ae7a4fd4fa32b86e5f01a8be4f74b28f SHA1: 5b69dc4232d32bda6f2e5fb9bd3c2090ac7658c8 SHA256: 7df2dd77c6a1f56909ab3a34c499a25257b70c77cceb82d7d773c194a7c94872 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled metagenomic sequences and the reads coverage information or sequencing reads. For users convenience MaxBin will report genome-related statistics, including estimated completeness, GC content and genome size in the binning summary page. License: unknown Vendor: Institut Pasteur Package: gensoft-mbmdr-4.4.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 14620 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-mbmdr-4.4.1_1.0_amd64.deb Size: 4851372 MD5sum: 1cd9acdae4805ca4de4a8b342be1d184 SHA1: a3439e2c2a28b29ca2b6ef60d1337abf81a8fad5 SHA256: ecc747591d1cf104fd0ea0887765b0ac03262e6ce34adbf2affba6424f086ef6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A software that is able to detect multiple sets of significant gene-gene and/or gene-environment interactions in relation to a trait of interest. The trait can either be expressed on a binary scale, or on a continuous scale. License: unknown Vendor: Institut Pasteur Package: gensoft-mbuffer-20191016 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 280 Depends: zlib1g, libssl1.1, libc6 Filename: pool/main/gensoft-mbuffer-20191016_1.0_amd64.deb Size: 118648 MD5sum: efedb8f7187248b99377df158c28107d SHA1: f28426b507078f2b433466ebe9f507efabb44b62 SHA256: 1d4bcee1e75027b6c5aab834a95480a1deb80beaf1afb996f1aca496650534ba Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: mbuffer is a tool for buffering data streams with a large set of unique features License: unknown Vendor: Institut Pasteur Package: gensoft-mcell-3.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 744 Depends: libc6 Filename: pool/main/gensoft-mcell-3.4_1.0_amd64.deb Size: 329042 MD5sum: b3436451f4974111d47be71ed2c1488e SHA1: a7541ec87f270fc8c77082723905dabfd850aeb0 SHA256: a3e61a66e0375b51919f41f061e59813cb04a10dcf1e15a649c07967c86d8963 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MCell is a program that uses spatially realistic 3D cellular models and specialized Monte Carlo algorithms to simulate the movements and reactions of molecules within and between cells-cellular microphysiology. License: unknown Vendor: Institut Pasteur Package: gensoft-mcl-14-137 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 20473 Depends: gensoft-r-3.6.2, gensoft-adm-perl-5.30.1, libc6 Filename: pool/main/gensoft-mcl-14-137_1.0_amd64.deb Size: 7725356 MD5sum: a5f57d149e8f6c17ff5803b8e0a6cf4c SHA1: 9c7fcccdef65b3335ef813976aebd3c880859da6 SHA256: f60dbcf004e1ced63d0c813d289584ad94f9ce9d2f776ee3d6ccde56ecb9e22d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Cluster algorithm for graphs License: unknown Vendor: Institut Pasteur Package: gensoft-mdmcleaner-0.8.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 152018 Depends: libgcc-s1, gensoft-adm-python-3.8.1, gensoft-aragorn-1.2.38, zlib1g, gensoft-barrnap-0.9, wget, gensoft-prodigal-2.6.3.pp1, gensoft-blast+-2.12.0, gensoft-diamond-2.0.14, libc6, gensoft-hmmer-3.3.2 Filename: pool/main/gensoft-mdmcleaner-0.8.3_2.0_amd64.deb Size: 38765868 MD5sum: 1bebcc3cbcdbd7b0b064e29507c34f67 SHA1: 8b7f8b564ffff18776f4d132b98805ab9b43d472 SHA256: 9364a6a18e465a76aa4dc9bcd340b8e77461169a29f2596361a167f314025c0d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs License: unknown Vendor: Institut Pasteur Package: gensoft-mecat2-20190314 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2531 Depends: gensoft-zlib-1.2.11, gensoft-gcc-9.2.0, gensoft-adm-perl-5.30.1, libc6, gensoft-hdf5-1.10.6 Filename: pool/main/gensoft-mecat2-20190314_1.0_amd64.deb Size: 1023694 MD5sum: ed2cc73a492c6a3f31d9023509bbc2b4 SHA1: 15667d1dc33d2bf4992aa647ee5631e86ca2fc67 SHA256: 71c01d03d023ff09e5a1764202b74a26b641168b9cfd8c65952f3fcbf8310730 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an ultra-fast and accurate Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. License: unknown Vendor: Institut Pasteur Package: gensoft-medaka-1.11.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1712155 Depends: libbz2-1.0, libssl1.1, gensoft-samtools-1.14, gensoft-minimap2-2.17, zlib1g, libgcc-s1, libstdc++6, gensoft-htslib-1.14, gensoft-adm-python-3.8.1, libc6, gensoft-xz-5.2.5 Filename: pool/main/gensoft-medaka-1.11.3_1.0_amd64.deb Size: 703646728 MD5sum: bd168a16e680c8c0dd6ffee585581eae SHA1: e711fd8fe86c6ba3d05ede5c427207d5f93455a0 SHA256: 8232c4c78c9a33777e6649d34cb74fe2e3e312b6c41f8bb065229f3f6750b8af Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: medaka is a tool to create consensus sequences and variant calls from nanopore sequencing data. This task is performed using neural networks applied a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods whilst being much faster. License: unknown Vendor: Institut Pasteur Package: gensoft-medaka-1.12.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2120177 Depends: libgcc-s1, libsasl2-2, libsqlite3-0, gensoft-xz-5.2.5, libkeyutils1, libkrb5support0, libpsl5, libhx509-5-heimdal, libcom-err2, libcurl4, gensoft-samtools-1.18, libgmp10, libbz2-1.0, libssl1.1, librtmp1, libssh-4, libgssapi-krb5-2, libtasn1-6, libldap-2.4-2, libp11-kit0, libkrb5-3, libnghttp2-14, libidn2-0, libasn1-8-heimdal, libnettle7, libc6, libk5crypto3, zlib1g, gensoft-minimap2-2.26, libroken18-heimdal, libstdc++6, libheimbase1-heimdal, libbrotli1, libffi7, libcrypt1, libgnutls30, libgssapi3-heimdal, libhogweed5, libhcrypto4-heimdal, libunistring2, gensoft-adm-python-3.8.1, libkrb5-26-heimdal, libwind0-heimdal, libheimntlm0-heimdal, gensoft-htslib-1.18 Filename: pool/main/gensoft-medaka-1.12.1_1.0_amd64.deb Size: 1034650826 MD5sum: 9aefe83482a87952f43043662b3154fa SHA1: e3fc5ecc694685d137dcbf1074334f8b0b85527d SHA256: 7dd3c547d48ba920f59978333d71d839d0fbd362c073a54364a68ca771fcd674 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: medaka is a tool to create consensus sequences and variant calls from nanopore sequencing data. This task is performed using neural networks applied a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods whilst being much faster. 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It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods whilst being much faster. 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This task is performed using neural networks applied a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods whilst being much faster. License: unknown Vendor: Institut Pasteur Package: gensoft-medaka-2.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5438981 Depends: libpsl5, libwind0-heimdal, libssh-4, libc6, libcom-err2, libkrb5-26-heimdal, libnettle7, libssl1.1, libbrotli1, libhogweed5, libk5crypto3, libgssapi3-heimdal, libbz2-1.0, libsasl2-2, libasn1-8-heimdal, libhx509-5-heimdal, libkeyutils1, libsqlite3-0, libunistring2, libldap-2.4-2, gensoft-samtools-1.21, gensoft-xz-5.2.5, libkrb5support0, libgmp10, gensoft-adm-python-3.8.1, libp11-kit0, libroken18-heimdal, libkrb5-3, libgcc-s1, libheimntlm0-heimdal, gensoft-minimap2-2.28, libtasn1-6, libcurl4, libffi7, libstdc++6, gensoft-htslib-1.21, libheimbase1-heimdal, libgssapi-krb5-2, librtmp1, zlib1g, libidn2-0, libcrypt1, libhcrypto4-heimdal, libgnutls30, libnghttp2-14 Filename: pool/main/gensoft-medaka-2.0.1_1.0_amd64.deb Size: 3065627038 MD5sum: 2b6619a0a4cb08834324055ded5caf26 SHA1: 939943cf4e2ce32f14469d79d044d0583eb16a2b SHA256: 62f701622aededc7a32b983781990a4897bca3324a67aec2da054721ace60348 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: medaka is a tool to create consensus sequences and variant calls from nanopore sequencing data. This task is performed using neural networks applied a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods whilst being much faster. License: unknown Vendor: Institut Pasteur Package: gensoft-megahit-1.2.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 20344 Depends: gensoft-adm-python-2.7.17, gensoft-gcc-9.2.0, bzip2, libc6, zlib1g Filename: pool/main/gensoft-megahit-1.2.9_1.0_amd64.deb Size: 4107044 MD5sum: 2cd018a21ddf29e092c6e6a4f16626f9 SHA1: 025b74308ee611a5e919430534fd27758666b1b9 SHA256: c273760b03579e6e88bd53c036594fe2e95c42325d3a98c975ed8152b99c4f18 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly. License: unknown Vendor: Institut Pasteur Package: gensoft-melting-5.2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3670 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-melting-5.2.0_1.0_amd64.deb Size: 2641326 MD5sum: 428ef7a3f84efcb570d041ba685b31ad SHA1: 6a32b21d81586039380d631fc7bf6c9b5982b302 SHA256: 00ed0fcf76136bd680639ebc83c5840a33a6a111ab8edd45c45a281d4033ddfe Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Melting computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions License: unknown Vendor: Institut Pasteur Package: gensoft-membrain-seg-0.0.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5657487 Depends: zlib1g, libgcc-s1, gensoft-adm-python-3.8.1, libc6, libstdc++6 Filename: pool/main/gensoft-membrain-seg-0.0.2_1.0_amd64.deb Size: 3032483982 MD5sum: 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License: unknown Vendor: Institut Pasteur Package: gensoft-metator-1.1.4 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 521914 Depends: gensoft-networkanalysis-2.0.2, gensoft-pyfastx-0.8.4, gensoft-checkm-1.1.3, libstdc++6, libgcc-s1, zlib1g, gensoft-louvain-0.3, gensoft-bowtie2-2.3.5.1, gensoft-adm-python-3.8.1, gensoft-samtools-1.13, libc6 Filename: pool/main/gensoft-metator-1.1.4_1.0_amd64.deb Size: 162187270 MD5sum: dbd2e9aaa23daaa9bc772ea49f13d516 SHA1: 31bd8c5f5c7f8da5c5b79dad557f09a255d593a4 SHA256: 29bb35a71c4643db6e1d3bf0e9fd57a9cdbca01480375c57dcd85eb48d57c1ce Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Metagenomic Tridimensional Organisation-based Reassembly - A set of scripts that streamlines the processing and binning of metagenomic metaHiC datasets License: unknown Vendor: Institut Pasteur Package: gensoft-metavelvet-1.2.02 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 488 Depends: zlib1g, gensoft-gcc-9.2.0, libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-metavelvet-1.2.02_1.0_amd64.deb Size: 195222 MD5sum: f8c9c33b630238a713ec611bf4a94677 SHA1: 60d4e932fa0e7c190097e20aadbd76dc14310d19 SHA256: e6f4cf7b4a293fe02492fe921cc8119b504672c8b06996a525ea7920c187a4d9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Velvet software for Metagenome assembly pipeline License: unknown Vendor: Institut Pasteur Package: gensoft-metawrap-1.3.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 333729 Depends: libc6, gensoft-r-4.1.0, gensoft-prokka-1.14.5, gensoft-expat-2.4.1, gensoft-fastqc-0.11.9, gensoft-metabat-2.15, gensoft-kronatools-2.7.1, gensoft-spades-3.15.2, gensoft-concoct-1.1.0, gensoft-megahit-1.2.9, gensoft-taxator-tk-1.5.0, gensoft-salmon-1.3.0, gensoft-bmtools-3.102.4, zlib1g, gensoft-adm-python-2.7.17, gensoft-kraken-2.1.1, gensoft-trimgalore-0.6.7, gensoft-gcc-9.2.0, gensoft-quast-5.0.2, libbz2-1.0, gensoft-samtools-1.13, gensoft-pplacer-v1.1-alpha19, gensoft-bwa-0.7.17, gensoft-maxbin-2.2.7, gensoft-checkm-1.1.3, gensoft-bowtie2-2.3.5.1, gensoft-blast+-2.12.0, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-metawrap-1.3.2_1.0_amd64.deb Size: 114386288 MD5sum: 72bb3d3b002bc9a9f1ade18333236aa8 SHA1: e8d0f551c166685e13d23c858114b4e42a88d3e9 SHA256: 6bbc3596830818e7b0f84998941caa61270f2954be4b36aa5fc136d4aa182cc8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a flexible pipeline for genome-resolved metagenomic data analysis License: unknown Vendor: Institut Pasteur Package: gensoft-metis-5.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1090 Depends: libc6 Filename: pool/main/gensoft-metis-5.1.0_1.0_amd64.deb Size: 641728 MD5sum: 3ae5530a6cf9661aab39fca7abb90fcd SHA1: bc06f343e6ee898a653aa10a0245fb5d398c5b41 SHA256: 97f081684ce87dd7f0f156908c7cec56069beaa3e13e10e7ffe324ca47882bc1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. License: unknown Vendor: Institut Pasteur Package: gensoft-mfold-3.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4272 Depends: gensoft-libtiff-4.1.0, gensoft-ghostscript-9.50, gensoft-gcc-9.2.0, gensoft-freetype-2.10.1, gensoft-fontconfig-2.13.91, gensoft-xorg-libs-1.1, gensoft-libpng-1.6.37, gensoft-xz-5.2.4, gensoft-libjpeg-turbo-2.0.4, gensoft-libgd-gd-2.2.5, gensoft-expat-2.2.9 Filename: pool/main/gensoft-mfold-3.6_1.0_amd64.deb Size: 1298034 MD5sum: dc76907c894c41ee6cccbd600690ba95 SHA1: 4e9aded9e5c7894db8356c5a39ca6a633437305c SHA256: e955e62708b756a6cd2d8fee7f2d380d360416d37c85ee0fcb6bc4b55146a64b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RNA and DNA secondary structure prediction using nearest neighbor thermodynamic rules License: unknown Vendor: Institut Pasteur Package: gensoft-mfold-util-4.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3508 Depends: gensoft-libdrm-2.4.100, gensoft-freetype-2.10.1, gensoft-ghostscript-9.50, gensoft-xz-5.2.4, libc6, gensoft-fontconfig-2.13.91, gensoft-libtiff-4.1.0, gensoft-expat-2.2.9, libbz2-1.0, gensoft-libgd-gd-2.2.5, gensoft-freeglut-3.2.1, gensoft-gcc-9.2.0, gensoft-mesa-19.0.8, gensoft-glu-9.0.1, gensoft-libpng-1.6.37, zlib1g, gensoft-xorg-libs-1.1, gensoft-libjpeg-turbo-2.0.4 Filename: pool/main/gensoft-mfold-util-4.6_1.0_amd64.deb Size: 1358946 MD5sum: 89e4bc1a3984c47e833816c93bf25716 SHA1: d3d33c60eb25054a00398c058d681760a18de772 SHA256: 8b76c1b488ace22d14a7302c3f3550dfddf25bf2d583f09d9e7344b9a116bcf2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Small utilities needed by MFOLD program. License: unknown Vendor: Institut Pasteur Package: gensoft-mgefinder-1.0.6 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1200779 Depends: gensoft-apptainer-1.2.5 Filename: pool/main/gensoft-mgefinder-1.0.6_2.0_amd64.deb Size: 1222361292 MD5sum: ae97625ee4279cf0e5f03e64f0c15a86 SHA1: 7305dd5131fb15ee659cea780192659b17164009 SHA256: 06afc4aeb0c9cdd43ee01bf7f63ed84012796aa3b0409131a424dd9bc289b588 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates. License: unknown Vendor: Institut Pasteur Package: gensoft-mgems-1.3.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 721 Depends: gensoft-bzip2-1.0.6, libc6, gensoft-gcc-9.2.0, gensoft-xz-5.2.5, zlib1g Filename: pool/main/gensoft-mgems-1.3.1_1.0_amd64.deb Size: 271824 MD5sum: 7831809c82f7a7fc262f69ad37a420ce SHA1: 8b00350ff75bbe944a84ec095589da5b4f45f290 SHA256: a4303b00f02478d3d496517bfe2388803c3c576b7512a0ff632c0296700f4bac Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Bacterial sequencing data binning on strain-level based on probabilistic taxonomic classification. License: unknown Vendor: Institut Pasteur Package: gensoft-mgs-canopy-d55ed1a8b825 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 586 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-mgs-canopy-d55ed1a8b825_1.0_amd64.deb Size: 195266 MD5sum: 47c3cc590ca89e034b2242fcf6af2c2f SHA1: 0589436c2d06a7ca70fe25b42856873a696974df SHA256: 3420ce5e428ebe3e0c6c7d6949d482a7d5d24fc744279ee8274eef43c6987506 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: mgs-canopy is our variation of canopy clustering focuses on efficient clustering of points in multi-dimensional pearson correlation space License: unknown Vendor: Institut Pasteur Package: gensoft-mhap-2.1.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 821 Depends: gensoft-ssw-1.1, gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-mhap-2.1.3_1.0_amd64.deb Size: 750940 MD5sum: a07f8c944b1f6f5a1e2d6ae8a7c9c6d6 SHA1: f89828ec2813e37f16376252922736f3a3d10e03 SHA256: 67d5bb7c32da68a5f7f016b5e4e6fa9e0bcb60a2929155eb0cdc4da84315f2f9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MinHash alignment process (MHAP pronounced MAP) locality sensitive hashing to detect overlaps and utilities. License: unknown Vendor: Institut Pasteur Package: gensoft-mhc-i-3.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1029069 Depends: gensoft-adm-python-3.8.1, libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-mhc-i-3.1.1_1.0_amd64.deb Size: 363139090 MD5sum: 95e639f6226de52ed044f4fad5bfbbad SHA1: a50998f3179786436e5b40d68fa7e2056fa769a6 SHA256: 06139457059d91dcffab3e5903445c09a2b5e278144be48185ba42e00590ed4b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a collection of prediction tools for peptides binding to Major Histocompatibility Complex (MHC) class I molecules. License: unknown Vendor: Institut Pasteur Package: gensoft-micca-1.7.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 877940 Depends: gensoft-muscle-3.8.1551, libbz2-1.0, gensoft-swarm-3.0.0, gensoft-graalvm-ce-java8-20.0.0, gensoft-vsearch-2.7.1, gensoft-adm-python-2.7.17, gensoft-cutadapt-2.10, libc6, gensoft-fasttree-2.1.11, zlib1g Filename: pool/main/gensoft-micca-1.7.2_1.0_amd64.deb Size: 261852202 MD5sum: 8c46c07984820dc0c514ef4ef7d128f7 SHA1: ec81c114cedcb186c9451843bd0d74a4d71f3b73 SHA256: b5b52e7a10ab8c02dbc0d99c4966ac5f39da5d334a0e872bee5e3b264f4e8da7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: micca is an open-source, command-line software for the processing of amplicon sequencing data, from raw sequences to OTU tables, taxonomic classification and phylogenetic tree inference. The pipeline can be applied to a range of highly conserved genes/spacers, such as 16S rRNA gene and Internal Transcribed Spacer (ITS). License: unknown Vendor: Institut Pasteur Package: gensoft-microbiomeutil-r20110519 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 160446 Depends: gensoft-blast-2.2.26, gensoft-expat-2.2.9, gensoft-freetype-2.10.1, gensoft-libgd-gd-2.2.5, gensoft-adm-perl-5.30.1, gensoft-xz-5.2.4, zlib1g, gensoft-libtiff-4.1.0, libbz2-1.0, gensoft-xorg-libs-1.1, gensoft-fontconfig-2.13.91, gensoft-libjpeg-turbo-2.0.4, gensoft-libpng-1.6.37, libc6, gensoft-cdbfasta-0.99 Filename: pool/main/gensoft-microbiomeutil-r20110519_1.0_amd64.deb Size: 116498516 MD5sum: 529eb67b047429ed38d9551d4a26f557 SHA1: eab7f0595897c55602593c40c00f542b47d9e956 SHA256: 32fddf54a396e1eab71ca3d1faa87d24e1438dc9f44a9c4af5cb8cfb43ee8a7b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology. License: unknown Vendor: Institut Pasteur Package: gensoft-micropita-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 295919 Depends: libstdc++6, libc6, libbz2-1.0, libgcc-s1, zlib1g, gensoft-gsl-2.6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-micropita-1.1.0_1.0_amd64.deb Size: 88891334 MD5sum: d0649b1fb7052f76e4be8426ae12a986 SHA1: 5ff76e3db6f0231528a4aa55414e1e655d946cd0 SHA256: 44a531924e8cbe0755ab51fd63acd0752eae903678b986fec1bfd2b91ef3ec8c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: microbiomes - Picking Interesting Taxonomic Abundance. is a computational tool enabling sample selection in two-stage (tiered) studies. Using two-stage designs can more efficiently allocate resources, reducing study costs, and maximizing the use of samples. License: unknown Vendor: Institut Pasteur Package: gensoft-micsa-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 715 Depends: gensoft-graalvm-ce-java8-20.0.0, gensoft-meme-5.1.1 Filename: pool/main/gensoft-micsa-1.0_1.0_amd64.deb Size: 668648 MD5sum: c8f538d186d64620d3a12c86f3e59687 SHA1: 59314fc7af231ead9db2f4c16799067f2773fb11 SHA256: d89c1f50fe8845211854ed555474104413bfb6145f91d8e4c330014081f6bf95 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Identification of transcription factor binding sites in ChIP-Seq data License: unknown Vendor: Institut Pasteur Package: gensoft-mikado-2.3.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 477274 Depends: libgcc-s1, gensoft-class2-2.1.7, zlib1g, gensoft-stringtie-2.2.3, gensoft-hisat2-2.1.0, gensoft-tabix-0.2.6, gensoft-samtools-1.21, libstdc++6, gensoft-sqlite-3.31.0, gensoft-diamond-2.1.9, gensoft-blast+-2.16.0, gensoft-adm-python-3.9.16, gensoft-prodigal-2.6.3.pp1, libc6, gensoft-gnuplot-5.2.8, gensoft-portcullis-1.2.4 Filename: pool/main/gensoft-mikado-2.3.4_1.0_amd64.deb Size: 165156458 MD5sum: 53b027036c80f3c2817040dde4df51b4 SHA1: 3d2c17a028b611b651cfd6557995f46788886f60 SHA256: a94728e989afcd8f535f469c9ab1ca6a80fa2ac002d93f14126438c7acb8a0b6 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data and to select the best models in each locus License: unknown Vendor: Institut Pasteur Package: gensoft-mimalloc-1.6.7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 509 Depends: libc6 Filename: pool/main/gensoft-mimalloc-1.6.7_1.0_amd64.deb Size: 173578 MD5sum: cfe7eeff5365030713537fb911c2d16c SHA1: ec29ba43ca9a47b2438ddd070f40dbea32b002cb SHA256: 60f1ddcac0f94c101778f6b5e29b9bd5ade2779e6fc1b956360356ba971c96cf Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: mimalloc is a compact general purpose allocator with excellent performance License: unknown Vendor: Institut Pasteur Package: gensoft-minced-0.4.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 29 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-minced-0.4.2_1.0_amd64.deb Size: 29376 MD5sum: 338aa2b842a27dc3ebf75d164df5f731 SHA1: f019b968383877b593014b0c81c20b4feaf20bb5 SHA256: 3384e2b263c9f352bb08b0036500fb7ba7e79ed82cb3ebaab8fa453b35999e51 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program to find Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) in full genomes or environmental datasets such as metagenomes License: unknown Vendor: Institut Pasteur Package: gensoft-miniasm-0.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 334 Depends: libc6, zlib1g Filename: pool/main/gensoft-miniasm-0.3_1.0_amd64.deb Size: 130590 MD5sum: f64b5347d4353b7cf06be9f4594e6887 SHA1: c0694f0ef94e88d816c39cde282291be135f6e46 SHA256: 7dc59732b69fd3a8a20f757432de632ce0de6010e773628d25134174392f9e24 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. License: unknown Vendor: Institut Pasteur Package: gensoft-minigraph-0.15 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1003 Depends: libc6, zlib1g Filename: pool/main/gensoft-minigraph-0.15_2.0_amd64.deb Size: 373412 MD5sum: e01a29c82b6e0989a94ef27d4de06a81 SHA1: ad856495d96e9809171f075d78ee2986a7e2ede8 SHA256: b625b7ff337c696226bd53b20fca4df86b50fef58f0a7d5c991a1c749fb7e1f5 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Minigraph is a sequence-to-graph mapper and graph constructor. License: unknown Vendor: Institut Pasteur Package: gensoft-minigraph-0.18 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1330 Depends: libc6, zlib1g Filename: pool/main/gensoft-minigraph-0.18_2.0_amd64.deb Size: 488798 MD5sum: b02e7a6af70ea1cff00146136e8eacda SHA1: 7b95895fc9a4bfaa992a603d52cc6eb50b09c9e2 SHA256: 97446a47fefa2b784e13a31c7f2aa57c748bb33d00359c8daf028c01333c7d02 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Minigraph is a sequence-to-graph mapper and graph constructor. License: unknown Vendor: Institut Pasteur Package: gensoft-minimap2-2.17 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 22645 Depends: gensoft-adm-python-2.7.17, libc6, zlib1g Filename: pool/main/gensoft-minimap2-2.17_2.0_amd64.deb Size: 6879692 MD5sum: 6ca941b0ab52b56b2563194c6932daf0 SHA1: 34991ddfd987089d54c465f5bcdfc162071a87b2 SHA256: a611e7eae67ee92308998d80fd63177f464e2b299aae0a00a0c2485ea9e2842c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database License: unknown Vendor: Institut Pasteur Package: gensoft-minimap2-2.26 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 22996 Depends: zlib1g, gensoft-adm-python-2.7.17, libc6 Filename: pool/main/gensoft-minimap2-2.26_2.0_amd64.deb Size: 7025528 MD5sum: 2b8ac4458e9788c2b6ffa395e3696983 SHA1: d6e610329f0c2af44d5ab42cf287ac934bf9fbce SHA256: 1104a988fe90b5d98b84930e10aa58238ab40f0ca76855ad4538e789e00c3c76 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database License: unknown Vendor: Institut Pasteur Package: gensoft-minimap2-2.28 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 23039 Depends: zlib1g, libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-minimap2-2.28_1.0_amd64.deb Size: 7043082 MD5sum: 757ff1e233db7734869a9b72b8baeea2 SHA1: 1e20608124d5764b397dab09e8ccc0531229db75 SHA256: 2c47c36c2d3a75e3ed0d5cd578f3aa57ebb0bc082405eb44b2cb4d02abfbe363 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database License: unknown Vendor: Institut Pasteur Package: gensoft-minipolish-0.1.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12665 Depends: gensoft-minimap2-2.17, gensoft-miniasm-0.3, libstdc++6, gensoft-adm-python-3.8.1, libgcc-s1, gensoft-racon-1.4.3, libc6 Filename: pool/main/gensoft-minipolish-0.1.3_2.0_amd64.deb Size: 3993318 MD5sum: e2daa8d85bc4e05fd793df58defff05f SHA1: c0b6e1197e50cad189ab5621b846bfc0d10a4da0 SHA256: 55802a4b6338a49528c85401f76a539fb3cf58ec2c197a3b13ac4d23707c29a8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: tool to polish up a miniasm assembly using Racon , while keeping the assembly in graph form. License: unknown Vendor: Institut Pasteur Package: gensoft-minipolish-0.2.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 15394 Depends: gensoft-miniasm-0.3, libc6, libstdc++6, gensoft-minimap2-2.28, gensoft-racon-1.5.0, libgcc-s1, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-minipolish-0.2.0_1.0_amd64.deb Size: 4937198 MD5sum: cc592b1574fd3bf15c0959731825c590 SHA1: f76efa714005dd3566098d09425e4a8b38ecbeb8 SHA256: 3402031a165a7e4991c00fbff26313da2b38e21a32dc3469a520a6ee0ddd9940 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: tool to polish up a miniasm assembly using Racon , while keeping the assembly in graph form. License: unknown Vendor: Institut Pasteur Package: gensoft-mira-4.0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4473 Depends: gensoft-gcc-9.2.0, gensoft-xz-5.2.4, gensoft-tcl-8.6.10, libc6, zlib1g, gensoft-icu-65.1, libbz2-1.0, gensoft-gperftools-2.7, gensoft-expat-2.2.9, gensoft-zstd-1.4.4, gensoft-boost-1.72.0 Filename: pool/main/gensoft-mira-4.0.2_1.0_amd64.deb Size: 2004072 MD5sum: 7dd8a181d5a1dcb9c39a6e8bbe38410d SHA1: a52a3e655c70fe6eb431a0d009f0d3b0b53deecf SHA256: 0210c30aed31b5acaf444ce11c6232f43f154d349db567ddba46507c34b10493 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio CCS and error corrected data usable, uncorrected not yet License: unknown Vendor: Institut Pasteur Package: gensoft-miranda-3.3a Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 632 Depends: libc6 Filename: pool/main/gensoft-miranda-3.3a_1.0_amd64.deb Size: 125348 MD5sum: ed4f2de678b5c633ddf040ecf0160695 SHA1: d37fda1b17c761ad9edc4bb7ccb2a14f8cd2d50d SHA256: 6f9b658a4de89cb0356aade45b08a5bd8dfe5e7a16fe40fe36576832588d30c7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an miRNA target scanner which aims to predict mRNA targets for microRNAs using dynamic-programming alignment and thermodynamics. License: unknown Vendor: Institut Pasteur Package: gensoft-misopy-0.5.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 282566 Depends: gensoft-samtools-1.10, gensoft-adm-python-2.7.17, gensoft-bedtools-2.29.2 Filename: pool/main/gensoft-misopy-0.5.4_1.0_amd64.deb Size: 78018726 MD5sum: 309a245e3891e323aac4a3fd7e735dda SHA1: 27750f3329143390f8714b2bd8cfd18f58fe6159 SHA256: b1eeca3300927727b02c3bfab702338dc833649cd33334b94675267bc793d644 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MISO (Mixture-of-Isoforms) is a probabilistic framework that quantitates the expression level of alternatively spliced genes from RNA-Seq data, and identifies differentially regulated isoforms or exons across samples. By modeling the generative process by which reads are produced from isoforms in RNA-Seq, the MISO model uses Bayesian inference to compute the probability that a read originated from a particular isoform. License: unknown Vendor: Institut Pasteur Package: gensoft-mitofates-1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 18060 Depends: gensoft-gnuplot-5.2.8, libc6, gensoft-adm-perl-5.30.1, gensoft-libsvm-324 Filename: pool/main/gensoft-mitofates-1.2_1.0_amd64.deb Size: 2396396 MD5sum: c9e4a5231e1061eaadcd49f896304bac SHA1: 156fa8ab761c17e1bda0f4ef6be5b67784fae352 SHA256: a64658c9c6eb3edbc5916ef9446a8ae711a6a63dbdd48ee26a16ea854e2b32ab Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MitoFates predicts mitochondrial presequence, a cleavable localization signal located in N-terminal, and its cleaved position License: unknown Vendor: Institut Pasteur Package: gensoft-mix-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 189360 Depends: libc6, gensoft-mummer-3.23, gensoft-adm-perl-5.30.1, libgcc-s1, libstdc++6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-mix-1.0_1.0_amd64.deb Size: 55216732 MD5sum: a4463111162fc8957b57aa872dfc1820 SHA1: 096bd40c2fd4de7340f4135018f50b9a2575e202 SHA256: 57fd3a54ec73016359cec201ea17a1523e5e5efad2f10d6ffb08831abd360737 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. License: unknown Vendor: Institut Pasteur Package: gensoft-mkl-2020.4.304 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3144222 Filename: pool/main/gensoft-mkl-2020.4.304_2.0_amd64.deb Size: 1112379498 MD5sum: 6595b5b63bb0c95719e45655553a2524 SHA1: 9263a40a7dccbd04e743a972cedce70a87f53393 SHA256: b9c81970e7201b5de60779f67b0aa8fe0ffaa75216d3bea4669a77cfa62d53ea Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-mlpack-3.4.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 132865 Depends: gensoft-boost-1.72.0, gensoft-armadillo-9.800.4, zlib1g, libc6, gensoft-blas-3.8.0, gensoft-atlas-3.10.2, gensoft-gcc-9.2.0, gensoft-hdf5-1.10.6 Filename: pool/main/gensoft-mlpack-3.4.2_1.0_amd64.deb Size: 27308198 MD5sum: 4928a07682165591e4b6a14684a22a72 SHA1: 5125981dbecaba0cbf8ab6a2ec23a424431f7a86 SHA256: 532cdac5d97e151281baafeb9ff6a354bb8977498dcc437f91143531ed03fd28 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fast, flexible C++ machine learning library License: unknown Vendor: Institut Pasteur Package: gensoft-mlst-2.19.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 170008 Depends: gensoft-any2fasta-0.4.2, gensoft-adm-perl-5.30.1, gensoft-blast+-2.14.1, libc6 Filename: pool/main/gensoft-mlst-2.19.0_2.0_amd64.deb Size: 13152640 MD5sum: 5dbd491e4e2ca9e8018e863f7123b5bf SHA1: 70cb1b16a52d546b7f42f186b1b9c4969fbedb48 SHA256: b481df5bad542eb6318209b74e806521bc3b1262a38188be95a60c1e04e22cc3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Scan contig files against traditional PubMLST typing schemes License: unknown Vendor: Institut Pasteur Package: gensoft-mlst-2.23.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 222199 Depends: libc6, gensoft-any2fasta-0.4.2, gensoft-blast+-2.14.1, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-mlst-2.23.0_2.0_amd64.deb Size: 17533622 MD5sum: 32c168504bb483c18a650e1286468a6e SHA1: cf3119347e2d259131b216245cc7ad1ac0fe2212 SHA256: f42e74e1effb164a74386d4c464e53cd0c0fdd50f6889ba6c4489a525d537915 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Scan contig files against traditional PubMLST typing schemes License: unknown Vendor: Institut Pasteur Package: gensoft-mm-common-1.0.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5187 Depends: gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-mm-common-1.0.3_1.0_amd64.deb Size: 532066 MD5sum: 491a850445f72ccfecc311fb273bb48d SHA1: dc72d1f8c340bc2d0523aa6003fd1ec08e7e292e SHA256: d4adcdaf86644f8528dac3027052c98a8bd22992f3fa8a86e264ecd8bc0c56b3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: mm-common module provides the build infrastructure and utilities shared among the GNOME C++ binding libraries. License: unknown Vendor: Institut Pasteur Package: gensoft-mmdb2-2.0.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 13584 Depends: gensoft-gcc-9.2.0 Filename: pool/main/gensoft-mmdb2-2.0.5_1.0_amd64.deb Size: 3623774 MD5sum: 9f4b2d087915c67168e9a6df712e4cc9 SHA1: 92a7018a674618a2109c352181f69bcb54001d42 SHA256: 74d62e47bc7990b277b4b1bcad18e15395c47076c1a23beda149b961889d00f4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MMDB is designed to assist developers in working with macromolecular coordinate files. The library handles both PDB and mmCIF format files. License: unknown Vendor: Institut Pasteur Package: gensoft-mmseqs2-10-6d92c Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 4145 Depends: libbz2-1.0, zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-mmseqs2-10-6d92c_1.0_amd64.deb Size: 1708392 MD5sum: 800aead38dda38699677c2a51ef3c935 SHA1: 358c0cbcc5f729ec029c70f387f506b64ae43260 SHA256: edb654ccb454de7aab204cdf4efe6c7e9a228baac0c5c9da0687f40dd92d0b79 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. 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License: unknown Vendor: Institut Pasteur Package: gensoft-mmseqs2-12-113e3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5808 Depends: zlib1g, gensoft-openmpi-4.0.5, libbz2-1.0, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-mmseqs2-12-113e3_2.0_amd64.deb Size: 2285490 MD5sum: 4aa3813b1afda0cea73d1dc5ad1bb318 SHA1: a69eaa8ea4a2f9b8381d772fc47cce8980ee2d33 SHA256: 3aaaa408a534811c5652e3cdd1d96a9d851ab3900440a54ce620b8d9a010d691 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. 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License: unknown Vendor: Institut Pasteur Package: gensoft-mmseqs2-15-6f452 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 26946 Depends: gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0, libc6, libbz2-1.0, zlib1g Filename: pool/main/gensoft-mmseqs2-15-6f452_2.0_amd64.deb Size: 10292936 MD5sum: 6d1752f9964f322bcedb78e06d7bf36b SHA1: 34fc47283caa1a0c11d2bcd51002cb145dae3902 SHA256: d324c59186b4440e89021337121f8347ad9d8a05099b9d96de735180282a90fe Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. License: unknown Vendor: Institut Pasteur Package: gensoft-mmseqs2-16-747c6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 27283 Depends: gensoft-gcc-9.2.0, libc6, zlib1g, libbz2-1.0, gensoft-openmpi-4.0.5 Filename: pool/main/gensoft-mmseqs2-16-747c6_1.0_amd64.deb Size: 10469628 MD5sum: 2aa5f7219eb1c6b6f9def475abdf1581 SHA1: d3db1377156ce882f77f4fd4ce06f36a6e9d337e SHA256: 7aff3ea36d7b10ab7f69f6ed01f3ed5a9a03f50123878f035415738a7373d6c5 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. 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License: unknown Vendor: Institut Pasteur Package: gensoft-mmseqs2-18-8cc5c Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 295658 Depends: libc6, libbz2-1.0, zlib1g, gensoft-ucx-1.18.0, gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-mmseqs2-18-8cc5c_1.0_amd64.deb Size: 207356576 MD5sum: 32f1c6d8f9c9141c9626276f9650a855 SHA1: f5a88a51c3effcd2ed7b22d5a815f01d7478c3e5 SHA256: bddfa11220c13fb55012881d77d0c01049ccce84c25ff6733d9dbfe169f345f6 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. License: unknown Vendor: Institut Pasteur Package: gensoft-mmtsb-toolset-fa2e5ee Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 43074 Depends: gensoft-charmm-v45, libc6, gensoft-adm-perl-5.30.1, gensoft-blast-2.2.26, gensoft-gcc-9.2.0, gensoft-dssp-2.2.1 Filename: pool/main/gensoft-mmtsb-toolset-fa2e5ee_1.0_amd64.deb Size: 14445194 MD5sum: b873219f7d9fe39b03de2e7829d40829 SHA1: bbc30c1d264efeca9cb43ef738cdffc5fca97725 SHA256: 0c88f4fe98ca29b8a9497dc914ab9d1647b8142dec80410ed59f3062c906d281 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: (Multiscale Modeling Tools for Structural Biology) a collection of perl-based user-level utilities as well as programming libraries for multiscale protein structure modeling. License: unknown Vendor: Institut Pasteur Package: gensoft-mob-suite-3.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 249631 Depends: libgcc-s1, libstdc++6, zlib1g, libc6, gensoft-adm-python-3.8.1, gensoft-blast+-2.10.0, libssl1.1, gensoft-mash-2.2, gensoft-curl-7.68.0 Filename: pool/main/gensoft-mob-suite-3.0.1_1.0_amd64.deb Size: 80312062 MD5sum: c5002f9845a3561ce3a72b4037b206d4 SHA1: 8c1a819408a94d75b80b151afcbb75ebb5da9295 SHA256: b3f8f4f671b111445fd8eac63b7f080a62fc7c239eb08f08cbe7a37fb0029340 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies License: unknown Vendor: Institut Pasteur Package: gensoft-mobster-0.1.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 242803 Depends: gensoft-graalvm-ce-java8-20.0.0, gensoft-mosaik-2.2.3, gensoft-bwa-0.7.17 Filename: pool/main/gensoft-mobster-0.1.6_1.0_amd64.deb Size: 85322944 MD5sum: 71bcd63c8061317ecb583778146fd6ee SHA1: 81782f6918d5a8cb8c4a3228cead578f0e1c2115 SHA256: b427964b603cee893f626ab7c934c185508e4252971e2131e90f1d3c4fc0c2e9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: detect novel (non-reference) Mobile Element Insertion (MEI) events in BAM files. License: unknown Vendor: Institut Pasteur Package: gensoft-modeltest-ng-0.2.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3781 Depends: zlib1g, gensoft-gcc-9.2.0, gensoft-openmpi-4.0.5, libc6 Filename: pool/main/gensoft-modeltest-ng-0.2.0_1.0_amd64.deb Size: 1733904 MD5sum: ffa45d9338a0361e2266d2b41f4f4550 SHA1: 1d09e8af4d876bf9033a5bff9e55c4ca5f5f0749 SHA256: 8b8f57b4b01e25cef4ea80ed71becf38c167738469620c85258c374e7439b983 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and protein alignments. License: unknown Vendor: Institut Pasteur Package: gensoft-modkit-0.4.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 24384 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-modkit-0.4.0_1.0_amd64.deb Size: 8782500 MD5sum: f17fd1dec2fd6bf5a26166a16546063b SHA1: 18c5fd9aa85d34f999c70969c501db1a7ca0558f SHA256: 164ca8eee91e9ab99a7c91da723b93ed7a3f6fc45c4d9484db3670065f92555b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A bioinformatics tool for working with modified bases from Oxford Nanopore License: unknown Vendor: Institut Pasteur Package: gensoft-modkit-0.5.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 33460 Depends: libc6, gensoft-gcc-9.2.0, libbz2-1.0 Filename: pool/main/gensoft-modkit-0.5.0_1.0_amd64.deb Size: 11887860 MD5sum: d2513fc3439e03432f4462fc91f1a5eb SHA1: 5d744d0a2382fd1a081730f7e870dfa4a022f3e3 SHA256: 73b681a3108a5dac585c559f5e7b9f78e56e383652c8f7e93a5d65c3daf4069c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A bioinformatics tool for working with modified bases from Oxford Nanopore License: unknown Vendor: Institut Pasteur Package: gensoft-modules-4.4.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1722 Depends: less, gensoft-tcl-8.6.10 Filename: pool/main/gensoft-modules-4.4.0_1.0_amd64.deb Size: 419174 MD5sum: e7bdf4946936588841444d70e8cb8525 SHA1: bde654901e41e02d228c9d3f44b4462dc5bf78ae SHA256: 3bd069333ab5c52a0ac9ca2b976c48a6460fad7229d9d8f4f899979e3eefe625 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: environment modules package License: unknown Vendor: Institut Pasteur Package: gensoft-mono-6.12.0.122 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 629686 Depends: zlib1g, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-mono-6.12.0.122_1.0_amd64.deb Size: 213130872 MD5sum: 37cf20462fdda33fdd16a275742a7762 SHA1: 2e70f94079604dae378a36ea3e94d73c8263898a SHA256: 455f750dfef9b649355dc652bca523edcff03db857e871b67012073224ff90b4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: An open source, cross-platform, implementation of C# and the CLR that is binary compatible with Microsoft.NET. License: unknown Vendor: Institut Pasteur Package: gensoft-mosaik-2.2.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1940 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-mosaik-2.2.3_1.0_amd64.deb Size: 811542 MD5sum: f070890cd3c35fdbbc8c06b57ceb49da SHA1: 1d42b60578a2e44ee09b6cbade845ad9d92c725a SHA256: bf97e00c5bae88780c190dd8c8c0cf1f1db3852f0956029096160700d456fe8f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MOSAIK is a reference-guided aligner for next-generation sequencing technologies. License: unknown Vendor: Institut Pasteur Package: gensoft-mosdepth-0.3.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 648 Depends: libc6 Filename: pool/main/gensoft-mosdepth-0.3.4_1.0_amd64.deb Size: 222962 MD5sum: 714688c935ec3f1a087b181c9a0cac0c SHA1: fe0058899a7e18cedb9f604d40fa2c774246f89c SHA256: 0bfb7c91e1ccfdc5f04970a4ceb3fb41b64965d7785e62210e46e7d32b001bf6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing License: unknown Vendor: Institut Pasteur Package: gensoft-mothur-1.43.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 18520 Depends: libc6, libreadline8, gensoft-gsl-2.6, libbz2-1.0, gensoft-zstd-1.4.4, libtinfo5, zlib1g, gensoft-xz-5.2.4, gensoft-gcc-9.2.0, gensoft-boost-1.72.0, gensoft-hdf5-1.10.6 Filename: pool/main/gensoft-mothur-1.43.0_1.0_amd64.deb Size: 7366458 MD5sum: bd9bb3b578032792c9cfe33f09268971 SHA1: b22edac12a170a428646a938df13b20c4bde65d7 SHA256: b55d6a525a1ded069234fa983bbb5c60080488afd2ecdb8508bdadef43d87af8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a single resource to analyze molecular data that is used by microbial ecologists. Many of these tools are available elsewhere as individual programs and as scripts, which tend to be slow or as web utilities, which limit your ability to analyze your data. mothur offers the ability to go from raw sequences to the generation of visualization tools to describe alpha and beta diversity License: unknown Vendor: Institut Pasteur Package: gensoft-mothur-1.44.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 17852 Depends: gensoft-gsl-2.6, libc6, gensoft-gcc-9.2.0, libbz2-1.0, libtinfo5, gensoft-zstd-1.4.4, zlib1g, gensoft-hdf5-1.10.6, gensoft-boost-1.72.0, libreadline8, gensoft-xz-5.2.5 Filename: pool/main/gensoft-mothur-1.44.3_2.0_amd64.deb Size: 7128980 MD5sum: e448a632e8ce72469f260eff2ebde2e4 SHA1: 4d9ebf35ea81120491c8963b38d48128eca168b5 SHA256: 7a2b1b25b46521fdf6f6411a16aa8a9183ec14dbed7c1128296f6402dfca4bcf Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a single resource to analyze molecular data that is used by microbial ecologists. Many of these tools are available elsewhere as individual programs and as scripts, which tend to be slow or as web utilities, which limit your ability to analyze your data. mothur offers the ability to go from raw sequences to the generation of visualization tools to describe alpha and beta diversity License: unknown Vendor: Institut Pasteur Package: gensoft-mothur-1.48.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 18393 Depends: gensoft-boost-1.72.0, libreadline8, libtinfo5, libbz2-1.0, gensoft-gsl-2.6, zlib1g, gensoft-hdf5-1.10.6, libc6, gensoft-zstd-1.4.4, gensoft-gcc-9.2.0, gensoft-xz-5.2.5 Filename: pool/main/gensoft-mothur-1.48.0_2.0_amd64.deb Size: 7344786 MD5sum: 6cc9514e3caf045f5be3d490281e4095 SHA1: 61776342dca0e173568d590ccaea566f30a87417 SHA256: 8896aef12d8eaff2e7167e07b1dcff3f19d4a00b5f5628c78de3a5c4b2ce1689 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a single resource to analyze molecular data that is used by microbial ecologists. Many of these tools are available elsewhere as individual programs and as scripts, which tend to be slow or as web utilities, which limit your ability to analyze your data. mothur offers the ability to go from raw sequences to the generation of visualization tools to describe alpha and beta diversity License: unknown Vendor: Institut Pasteur Package: gensoft-motif-2.3.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 70191 Depends: gensoft-xorg-libs-1.1, gensoft-libjpeg-turbo-2.0.4, gensoft-fontconfig-2.13.91, libc6, libbz2-1.0, gensoft-libpng-1.6.37, gensoft-expat-2.2.9, zlib1g, gensoft-freetype-2.10.1 Filename: pool/main/gensoft-motif-2.3.8_1.0_amd64.deb Size: 22427166 MD5sum: 6aa9a1085bcc5a3ad6311614ca29461b SHA1: da91c181f626081a87cb45d037e92db3fe50e4f4 SHA256: 22674e7a758a1e8f288bf4a904446d1156ebc7a02392f833399e97ecb08ea538 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Motif is a freely available source code distribution for the Motif user interface component toolkit License: unknown Vendor: Institut Pasteur Package: gensoft-motioncor2-1.4.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3168 Depends: gensoft-cuda-11.2 Filename: pool/main/gensoft-motioncor2-1.4.0_2.0_amd64.deb Size: 1086974 MD5sum: b9cfa97b4fde9b866d82445af10f0b97 SHA1: c15f9a6556e2e462bae6b59e43c10914699793e8 SHA256: b931182a4385bc1f222945e121209dfedb8cccb659c3709c827baf1a290dd361 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MotionCor2 is a multi-GPU program that correects beam-induced sample motion recorded on dose fractionated movies stacks. it implements a robust and efficient iterative alignment algorithm that delivers precise measurement and correction of both global and local motions at single pixel leve, suitable for both single-particle and tomographic images. License: unknown Vendor: Institut Pasteur Package: gensoft-motioncor2-1.5.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3678 Depends: libgcc-s1, zlib1g, libstdc++6, gensoft-cuda-11.6, libc6, gensoft-xz-5.2.5, gensoft-libtiff-4.1.0, gensoft-libjpeg-turbo-2.0.4 Filename: pool/main/gensoft-motioncor2-1.5.0_2.0_amd64.deb Size: 1411024 MD5sum: e27b51def5cdcd5d668f2cc88c7978e6 SHA1: 6dda891cf0a663d3f2e5c86846f3396d89120029 SHA256: bb37376f7fb59c0b8de729e9793631290cf6237868565bad230468b535a37757 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MotionCor2 is a multi-GPU program that correects beam-induced sample motion recorded on dose fractionated movies stacks. it implements a robust and efficient iterative alignment algorithm that delivers precise measurement and correction of both global and local motions at single pixel leve, suitable for both single-particle and tomographic images. License: unknown Vendor: Institut Pasteur Package: gensoft-motioncor3-1.2.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6584 Depends: gensoft-libtiff-4.1.0, zlib1g, gensoft-gcc-9.2.0, gensoft-cuda-12.8, gensoft-libjpeg-turbo-2.0.4, libc6, gensoft-xz-5.2.5 Filename: pool/main/gensoft-motioncor3-1.2.1_1.0_amd64.deb Size: 1556204 MD5sum: 44f76a2525b68ff804392e10ae1ea826 SHA1: 1793bca0b0056de7ad7e05a778687042b3bb8c52 SHA256: 7e116a1d7bb3cc1ca03e6541de71bf568035bad4d6ce41151aeff90bc05e34e2 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MotionCor3, an improved implementation of MotionCor2 with addition of CTF (Contrast Transfer Function) estimation, is a multi-GPU accelerated software package that enables single-pixel level correction of anisotropic beam induced sample motion for cryo-electron microscopy and cryo-electron tomography images. License: unknown Vendor: Institut Pasteur Package: gensoft-mpc-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1604 Depends: gensoft-mpfr-4.0.2, gensoft-gmp-6.2.0, libc6 Filename: pool/main/gensoft-mpc-1.1.0_1.0_amd64.deb Size: 444172 MD5sum: 12f772d2e1f3e259f5a8f17cebd80853 SHA1: 99858416b677079d8147052535601e74702b67e1 SHA256: 8a9b813036c28b2ae91cdbda768c664b9e14d2d3a46fe97bf896227c2416aa26 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. License: unknown Vendor: Institut Pasteur Package: gensoft-mpfr-4.0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 9842 Depends: libc6, gensoft-gmp-6.2.0 Filename: pool/main/gensoft-mpfr-4.0.2_1.0_amd64.deb Size: 2558740 MD5sum: 37076f0f3ccdb0421d329435b3a2d5f6 SHA1: 0522ec28cc6ad3aca31f27ebcc12694b13d6aa29 SHA256: f08ecb848dac72c69e999518df120ed86a0b6edb9d20b4a885674eaedba38bb3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MPFR is a portable library written in C for arbitrary precision arithmetic on floating-point numbers. License: unknown Vendor: Institut Pasteur Package: gensoft-mpibench-4c855b8 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 67 Depends: libc6, gensoft-openmpi-4.0.5, gensoft-adm-perl-5.30.1, zlib1g Filename: pool/main/gensoft-mpibench-4c855b8_1.0_amd64.deb Size: 20912 MD5sum: acc82b265644249ce0e89fafe8539307 SHA1: 33779be4cb35554441a9877a11465c0631ac3545 SHA256: 3415e5bbbfd094ee2cfa3554fb037e231b7ebbcee5c3ba39d8dc0f2163d366d5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MPI benchmark to test and measure collective performance License: unknown Vendor: Institut Pasteur Package: gensoft-mpifileutils-0.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4033 Depends: zlib1g, libc6, gensoft-openmpi-4.0.5, gensoft-xz-5.2.4, gensoft-libiconv-1.16, gensoft-libarchive-3.4.2, libssl1.1, gensoft-libxml2-2.9.10, libbz2-1.0 Filename: pool/main/gensoft-mpifileutils-0.10_1.0_amd64.deb Size: 1169924 MD5sum: 6fe65ab2d54de5413465665bb496803d SHA1: 0d6447b77757063edf6b97b0ccf3e4c2456c4635 SHA256: f1990b987ad0bd4ab6940e1b1f6258dd1d0fa45b0971b667ffc5537d07137355 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: File utilities designed for scalability and performance License: unknown Vendor: Institut Pasteur Package: gensoft-mrbayes-3.2.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3317 Depends: libreadline8, zlib1g, libc6, gensoft-gcc-9.2.0, libtinfo5, gensoft-beagle-lib-3.1.2, gensoft-openmpi-4.0.5 Filename: pool/main/gensoft-mrbayes-3.2.7_1.0_amd64.deb Size: 2237262 MD5sum: 2b438f82e4dece4a9902cd2fe51e2e84 SHA1: fe2147be736e5ae5452786d87de570910193fbfd SHA256: 8c785376451d6fc8ac5265485c0f136c25e61064d324045918880417e6271a3f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A program for the Bayesian estimation of phylogeny License: unknown Vendor: Institut Pasteur Package: gensoft-mreps-2.6.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 95 Depends: libc6 Filename: pool/main/gensoft-mreps-2.6.0.1_1.0_amd64.deb Size: 45788 MD5sum: 43bbc1a46de3cab7f37c848543715bcf SHA1: 714fd7d2d98104a950a2346ce24c9213a86070e4 SHA256: 42093eae88b89453a2a9ac17af8815a5aa945004f1b7eb07b41a29d65458cd7a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A software for identifying serial repeats (usually called tandem repeats) in DNA sequences License: unknown Vendor: Institut Pasteur Package: gensoft-msa-2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 299 Depends: libc6 Filename: pool/main/gensoft-msa-2.1_1.0_amd64.deb Size: 104664 MD5sum: d47b5baee431349c0da8e37ceae63b2b SHA1: 55fe120c64d29853a6a178e782a8d6516dfdace1 SHA256: 06caea940577ae4c9c179a5a0623285155db61e583d3bcd11d6bbdb386ca98d0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A program to do multiple sequence alignment under the sum-of-pairs criterion License: unknown Vendor: Institut Pasteur Package: gensoft-msamtools-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2806 Depends: libc6, gensoft-argtable-2.13, zlib1g Filename: pool/main/gensoft-msamtools-1.1.0_1.0_amd64.deb Size: 1007418 MD5sum: bc9cb263293559edf3f7f31010ae1912 SHA1: d4b4df15b90a016a4eb5e3f90de8ea3a93e59d45 SHA256: 3f204b734064d6e2e5a1256bca8ae563981990f5b75ac45352306b2461a8a9fa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: msamtools provides useful functions that are commonly used in microbiome data analysis, especially when analyzing shotgun metagenomics or metatranscriptomics data. License: unknown Vendor: Institut Pasteur Package: gensoft-msamtools-1.1.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2795 Depends: libc6, gensoft-argtable-2.13, zlib1g Filename: pool/main/gensoft-msamtools-1.1.3_1.0_amd64.deb Size: 1005090 MD5sum: 87a1e57cdbe618a72abc82405986aee9 SHA1: 59342ed040b659a62f7e31f88616ef083436d40c SHA256: 723619821f56e22c2a38e58652f82cf13afcea3f5b3851e80aac1c1ca2feea38 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: msamtools provides useful functions that are commonly used in microbiome data analysis, especially when analyzing shotgun metagenomics or metatranscriptomics data. License: unknown Vendor: Institut Pasteur Package: gensoft-msaprobs-1.0.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 385 Depends: libc6, gensoft-gcc-9.2.0, gensoft-openmpi-4.0.5 Filename: pool/main/gensoft-msaprobs-1.0.5_1.0_amd64.deb Size: 243062 MD5sum: ff9888d963ec68d8300294ff9c3ed261 SHA1: d8b75e063a035db053ed581d66de6e9577ba515c SHA256: 780ae8adec7c823d01a9b5121109de2abc947524a9301f61dd7d1d482c19d1b6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MSAPROBS is a new and practial protein multiple sequence alignment algorithm based on pair hidden markov model and partition function posterrior probabilities. License: unknown Vendor: Institut Pasteur Package: gensoft-mscentipede-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 283466 Depends: zlib1g, libssl1.1, libc6, gensoft-adm-python-2.7.17, libbz2-1.0 Filename: pool/main/gensoft-mscentipede-1.0_1.0_amd64.deb Size: 89601462 MD5sum: b4691eb405994a724380dfccf78b81e8 SHA1: a97fa5d3181bb32fa6d2e20fdfd99c5174a9bcc8 SHA256: 136e12297c955585fb31789e02d881ae1cb48f291b7207e278e7614c7031d8c9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an algorithm for accurately inferring transcription factor binding sites using chromatin accessibility data (Dnase-seq, ATAC-seq) The hierarchical multiscale model underlying msCentipede identifies factor-bound genomic sites by using patterns in DNA cleavage resulting from the action of nucleases in open chromatin regions (regions typically bound by transcription factors). msCentipede, a generalization of the CENTIPEDE model, accounts for heterogeneity in the DNA cleavage patterns around sites bound by transcription factors. License: unknown Vendor: Institut Pasteur Package: gensoft-msmc-im-e6c5d3b Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 247565 Depends: libstdc++6, libc6, zlib1g, libgcc-s1 Filename: pool/main/gensoft-msmc-im-e6c5d3b_1.0_amd64.deb Size: 80208040 MD5sum: 6a8f7a4816677ddb4790db351a64c6e3 SHA1: a359e35dbd3b165dcafecf8100554be580990616 SHA256: ca9fc97c5d87291800dd28f98d81ec6e6f79cd53be73c91f8e25896a07bc8777 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC License: unknown Vendor: Institut Pasteur Package: gensoft-msmc2-2.1.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4672 Depends: libc6, gensoft-gsl-2.6, libgcc-s1 Filename: pool/main/gensoft-msmc2-2.1.3_1.0_amd64.deb Size: 1379364 MD5sum: d0443e939f62f3fed92cda41d28960f4 SHA1: abf849d944d758e0ba2d4ff948648215fd67d4cb SHA256: 903b6800d681df0c44354090fe923cc0bf9b072625216645e824d87d437c4325 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This program implements MSMC2, a method to infer population size history and population separation history from whole genome sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-mspcrunch-2.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 360 Depends: libc6 Filename: pool/main/gensoft-mspcrunch-2.5_1.0_amd64.deb Size: 277608 MD5sum: d1027469ffb63bf49776930a066679d0 SHA1: 8eaf0f91d971664113872a63789b74c1a57d5dd1 SHA256: a1595d0ca5dce3838ef2cfd855a5d38ea27568167fd7a4c4c2fc88a5473d1ff7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A filtering tool for Blast matches License: unknown Vendor: Institut Pasteur Package: gensoft-mstclust-0.21b Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 7087 Depends: libc6, zlib1g, libbz2-1.0 Filename: pool/main/gensoft-mstclust-0.21b_2.0_amd64.deb Size: 2655446 MD5sum: 06b057870ff179982fd108ec29257c97 SHA1: 69eb8a32b7a838d59ba90df60f01ae6f5dc40aa4 SHA256: c59268bdb7f2214e1260ee298c121a60548dbe48ad001b9bbce3ce74d8ed3715 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MSTclust is a command line program written in Java to compute Minimum Spanning Tree (MST)-based clustering from either profile (i.e. tuples of positive integers) or pairwise distance data. MSTclust can also be used to compute pairwise distances between profiles, single-linkage hierarchical classification trees, minimum spanning trees, and several statistics to assess the efficiency of a specific clustering. License: unknown Vendor: Institut Pasteur Package: gensoft-msweep-1.6.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 805 Depends: gensoft-bzip2-1.0.6, gensoft-gcc-9.2.0, gensoft-xz-5.2.5, zlib1g, libc6 Filename: pool/main/gensoft-msweep-1.6.3_1.0_amd64.deb Size: 320386 MD5sum: 83ec85854dfa1a0b18eee38bd040e7c4 SHA1: e7465b7f9aa3202ac8fd1bd4e167e08bdc3d7489 SHA256: 640fcb4744d4812c31a8b8909a8181ebbfe1368d879e39f71f69b08537e07789 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Fast and accurate bacterial community composition estimation on strain level by using pseudoalignments and variational inference. License: unknown Vendor: Institut Pasteur Package: gensoft-mtdev-1.1.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 298 Depends: libc6 Filename: pool/main/gensoft-mtdev-1.1.6_1.0_amd64.deb Size: 97670 MD5sum: e55a55dfc1a355ffb325fec4a041b856 SHA1: 3dc5ba1557bf3bf3f032a9391502a32f0962e6f2 SHA256: c0ad135b9252b8796b1757b808f287b8141b57a5b6104cb5fcc0a60991c90efa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The mtdev is a stand-alone library which transforms all variants of kernel MT events to the slotted type B protocol. The events put into mtdev may be from any MT device, specifically type A without contact tracking, type A with contact tracking, or type B with contact tracking. License: unknown Vendor: Institut Pasteur Package: gensoft-mtoolbox-1.2.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 231542 Depends: gensoft-adm-python-2.7.17, sed, gensoft-java-1.8.0, libstdc++6, gensoft-samtools-1.10, gensoft-muscle-3.8.31, gawk, libc6, libgcc-s1, gensoft-gmap-2015-07-23, gensoft-genomeanalysistk-3.6 Filename: pool/main/gensoft-mtoolbox-1.2.1_2.0_amd64.deb Size: 70759166 MD5sum: dcc4e7f6d2a9119a22035e0d1ec0eeb6 SHA1: d3a59383e722c6ab30b3d9b7331a8555a939651b SHA256: edd1d807ad84867d4943a10900c6d0bf16c7d9b12931150bac3892369d2d5a40 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-multalin-5.4.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 211 Depends: gensoft-adm-perl-5.30.1, libc6 Filename: pool/main/gensoft-multalin-5.4.1_1.0_amd64.deb Size: 91854 MD5sum: 2ccf344e5dd30c3a4aa705c7cccf1617 SHA1: 75f2c8f18883fc39814d4e60cc8f413cc0e7ed27 SHA256: b3d72583ed2bc52261b78656f5d104667463249def02c605d6af72ec4e18fcc8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This software will allow you to align simultaneously several biological sequences License: unknown Vendor: Institut Pasteur Package: gensoft-multiqc-1.12 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 138171 Depends: gensoft-gcc-9.2.0, gensoft-libpng-1.6.37, libgcc-s1, libstdc++6, zlib1g, libc6, gensoft-adm-python-3.8.1, gensoft-freetype-2.10.1 Filename: pool/main/gensoft-multiqc-1.12_1.0_amd64.deb Size: 42894376 MD5sum: 40ddb5f7e0483ff27d1be9251a7a8db6 SHA1: 0719ed4340ec18fa8b111d7a325ebfc45d88bcdc SHA256: edf2cec6c98e96cb379b7054985eb60e8b8ec1981bb5d2052d5936b3a13a2c20 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles a HTML report. Its a general use tool, perfect for summarising the output from numerous bioinformatics tools. License: unknown Vendor: Institut Pasteur Package: gensoft-multiqc-1.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 125581 Depends: gensoft-adm-python-3.8.1, gensoft-libpng-1.6.37, gensoft-freetype-2.10.1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-multiqc-1.8_1.0_amd64.deb Size: 40698106 MD5sum: 4c344f86bedc398645181a760085b2ed SHA1: 25a6e404a11678f1310ba3b23f49994f3bfe494e SHA256: 1c6da2ff89e9b4ef576f80c77e11a3dd896852b77ee6b75884d10d27b2f503a8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles a HTML report. Its a general use tool, perfect for summarising the output from numerous bioinformatics tools. License: unknown Vendor: Institut Pasteur Package: gensoft-multiqc-1.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 129635 Depends: gensoft-gcc-9.2.0, gensoft-adm-python-3.8.1, gensoft-freetype-2.10.1, gensoft-libpng-1.6.37 Filename: pool/main/gensoft-multiqc-1.9_1.0_amd64.deb Size: 40452718 MD5sum: 4396505b235014ad148f105183d384ab SHA1: 69db350e1e644a05b7f0214c91e4b1a9f2db9d51 SHA256: a180133526c9e291577d31233eebf6ce7df9ac7bc46aee0e931262e2b1b303f0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles a HTML report. Its a general use tool, perfect for summarising the output from numerous bioinformatics tools. License: unknown Vendor: Institut Pasteur Package: gensoft-multiz-tba-012109 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1169 Depends: libc6 Filename: pool/main/gensoft-multiz-tba-012109_1.0_amd64.deb Size: 423474 MD5sum: 7de6f675c9b5fafce7f95c2c4c91b486 SHA1: 28c3c4f910c75813d7b663af8db4988a5e452275 SHA256: 4e302c4c4fac830636f07992f0bd6898bb3d4a17d7588e7cd6616cb257ad829b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Multiz and TBA alignment programs License: unknown Vendor: Institut Pasteur Package: gensoft-mummer-3.23 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6129 Depends: mawk, libc6, gensoft-gcc-9.2.0, gensoft-gnuplot-5.2.8, csh, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-mummer-3.23_2.0_amd64.deb Size: 3083832 MD5sum: b27eebcff19d7de70266f53baff07c60 SHA1: f542ebf18b85f309ff29e35c0230d2e8dc634e16 SHA256: fe76bb6f4a8833e556b06c5ebe0b48495a41f2ce1bc99fa4f601f1f3e63159fd Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Rapidly aligning entire genomes, whether in complete or draft form License: unknown Vendor: Institut Pasteur Package: gensoft-mummer-4.0.0rc1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 32090 Depends: gensoft-adm-perl-5.30.1, gensoft-gnuplot-5.2.8, gensoft-gcc-9.2.0, libc6, mawk Filename: pool/main/gensoft-mummer-4.0.0rc1_2.0_amd64.deb Size: 7608904 MD5sum: 0bc86f411c1224e1e8e9507cf32e1465 SHA1: 7ff2d408a671c14a7b95ebea89126c66acda8a77 SHA256: b7a49442e126793fc62db43c44843c6e733ef5422be83515177263043ae1f8f4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Rapidly aligning entire genomes, whether in complete or draft form License: unknown Vendor: Institut Pasteur Package: gensoft-mumps-5.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 11844 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-mumps-5.3.1_1.0_amd64.deb Size: 4263578 MD5sum: efae905ae7d48bd9626ec174db539e84 SHA1: 5d90b437e783705f4c4ff1800031a82f7a94ee1e SHA256: b2156dc039a06e59a1fda3d3164e19f798f466e4ae016d3d784c487968161b09 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MUMPS a parallel sparse direct solver License: unknown Vendor: Institut Pasteur Package: gensoft-muparser-2.3.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 685 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-muparser-2.3.5_1.0_amd64.deb Size: 220634 MD5sum: cf64ac414e6965e34f8b9265c30809a5 SHA1: aa7450e5d70777a4d736f00f45ce6b790ddd4713 SHA256: 22680043fd68f64caa887de2b9eeed799424603f72ed2d57d93a454125cf348b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a fast math parser library for C/C++ with (optional) OpenMP support. License: unknown Vendor: Institut Pasteur Package: gensoft-muscle-3.8.1551 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 557 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-muscle-3.8.1551_2.0_amd64.deb Size: 266462 MD5sum: b3dcb2cfd6758861dcfeadad375df989 SHA1: a05693e7b1fa438a31353b9f1bae2b0e9c6e334e SHA256: 94ce39d0af59f2e5526e7c18d9100bababd93c926f1334999f5dfc062805e88b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Multiple alignment software for protein and nucleotide sequences License: unknown Vendor: Institut Pasteur Package: gensoft-muscle-3.8.31 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 389 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-muscle-3.8.31_2.0_amd64.deb Size: 175310 MD5sum: f8b63834ddcc434fa1dc135db6fa179c SHA1: cb9af39f7138d2ebddcefb33e3f0a57af58317e4 SHA256: b5b187cc87d93ed0b34964eb819a6aaf4d32cc6e5659fe5129f36c46068de770 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Multiple alignment software for protein and nucleotide sequences License: unknown Vendor: Institut Pasteur Package: gensoft-muscle-5.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 749 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-muscle-5.1_2.0_amd64.deb Size: 343116 MD5sum: fecc2c8bb7e9c659acf79e7e99d9787f SHA1: 3f80a7b5f7c6fb6857149e892cad9a78fdcafd1b SHA256: 1fdd8f4843f031a66bc94ff57cd749f6d61ef53b9c7e7190395983e3a049e730 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Multiple alignment software for protein and nucleotide sequences License: unknown Vendor: Institut Pasteur Package: gensoft-music-1.1.16 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 120161 Depends: gensoft-gcc-9.2.0, gensoft-freeglut-3.2.1, gensoft-adm-python-2.7.17, gensoft-xorg-libs-1.1, gensoft-libdrm-2.4.100, gensoft-openmpi-4.0.5, libc6, zlib1g, gensoft-mesa-19.0.8, gensoft-expat-2.2.9, gensoft-glu-9.0.1 Filename: pool/main/gensoft-music-1.1.16_1.0_amd64.deb Size: 28552314 MD5sum: 5f0808dbe14b41b69f79e163079f9103 SHA1: d53879a0d8bffa01042c67ca9f90cd26f4ed8df4 SHA256: 3ccb560f52890dcc911eadf06c026ea94a6f4b4f71e5244bf7a4afcb41424048 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an API allowing large scale neuron simulators using MPI internally to exchange data during runtime. License: unknown Vendor: Institut Pasteur Package: gensoft-musket-1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 415 Depends: zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-musket-1.1_1.0_amd64.deb Size: 191730 MD5sum: 7f74648ec0923557b6047ec679e91793 SHA1: 8f27a8e14d2708b4b036edb51b1b807e06532b8e SHA256: fbfa637c1488b6c89d08584187e1827635a4adb0b601f2c79ea9280602657626 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an efficient multistage k-mer based corrector for Illumina short read data. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. License: unknown Vendor: Institut Pasteur Package: gensoft-mustang-3.2.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 237 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-mustang-3.2.3_2.0_amd64.deb Size: 106604 MD5sum: 5465151a470b0f2ac533e870fc27e9f5 SHA1: cf5088a5fc67ff7f8e2f408ce1e717acd3a57af5 SHA256: 4314bd49cceb90632d604db81f9a9393fa039d0c13b615254cccf75160722d30 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MUltiple (protein) STructural AligNment alGorithm License: unknown Vendor: Institut Pasteur Package: gensoft-mutect-1.1.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 10178 Depends: gensoft-java-1.7.0 Filename: pool/main/gensoft-mutect-1.1.5_1.0_amd64.deb Size: 9665514 MD5sum: 61db46e44c87c5916283e66b3f50d7b2 SHA1: f33d6aa9a4ce1c93132405bbb119fc7652d7d287 SHA256: 4a81da83abcd99a14c339a144f23ed6efc4495e49fb381c2de1c1db134ba9098 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a method developed at the Broad Institute for the reliable and accurate identification of somatic point mutations in next generation sequencing data of cancer genomes License: unknown Vendor: Institut Pasteur Package: gensoft-muttui-2.0.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 596378 Depends: gensoft-adm-python-3.8.1, libc6, gensoft-treetime-0.8.6 Filename: pool/main/gensoft-muttui-2.0.2_1.0_amd64.deb Size: 191223680 MD5sum: 4433c73b2046deb98f3d2c9115fb25a6 SHA1: e6d021bcdea0ba3714c72fb6dc5d38e21037496b SHA256: 6f73f4c3940738a403d004b69270cad4643abe7d399f47fed1bbf777b443d480 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets License: unknown Vendor: Institut Pasteur Package: gensoft-mview-1.67 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2149 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-mview-1.67_1.0_amd64.deb Size: 420680 MD5sum: 401f48ffecf99fc49553abc63a1c4b79 SHA1: a718fd014aaf919f407862b19a3f61cd44eb2055 SHA256: 4694754fe33428267794a848af550332c66bdeb49e4642adbfa4c4b04ef19456 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Reformats the results of a sequence database search (BLAST, FASTA, etc) or a multiple alignment (MSF, PIR, CLUSTAL, etc) adding optional HTML markup to control colouring and web page layout License: unknown Vendor: Institut Pasteur Package: gensoft-mykrobe-0.13.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 154735 Depends: libc6, gensoft-adm-python-3.8.1, zlib1g Filename: pool/main/gensoft-mykrobe-0.13.0_1.0_amd64.deb Size: 71380940 MD5sum: 0c12f2148cb0d3185fd4a6262592338b SHA1: 7e1e03d4d2a80d8b265fd2cf5b89232031dc64c6 SHA256: e0b94434186dd0ba5df8ad3e65e4fcb7606a341abde37a0eac925779b6f5803c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis. License: unknown Vendor: Institut Pasteur Package: gensoft-mykrobe-0.9.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 117520 Depends: libc6, gensoft-adm-python-3.8.1, zlib1g Filename: pool/main/gensoft-mykrobe-0.9.0_1.0_amd64.deb Size: 42486514 MD5sum: 264ba9669dfdf661689f48f71b8eb084 SHA1: 12e1e6257971a363c1010835f432654c025fe733 SHA256: 2031edd3dae3ff83cd8a407cb66632816a7ea4db471ecc6dcabdccca96752f00 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis. License: unknown Vendor: Institut Pasteur Package: gensoft-myloasm-0.1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 8550 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-myloasm-0.1.0_1.0_amd64.deb Size: 2964686 MD5sum: 8f2d56abfe2262f98f5f417b44388bf3 SHA1: 302a4fb6c647b6818230e550a581d2d8250058ea SHA256: ff30ffe0774b1b82a1696f9843fa0e39ec7deeb8c9e7493d0a9d1defb981cf98 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a de novo metagenome assembler for long-read sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-mysql++-3.3.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 17030 Depends: libssl1.1, libc6, gensoft-mysql-client-8.0.19, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-mysql++-3.3.0_1.0_amd64.deb Size: 4904360 MD5sum: a18c26a8b7828b90cce9d747293437f0 SHA1: d0f3ec8524636dd334141fa0d687d90648580900 SHA256: 7573f01681d90117a26e67bf0bab873f17f3db6c9ca41b9f3694dd0bbb5b6326 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Transmembrane topology prediction License: unknown Vendor: Institut Pasteur Package: gensoft-mysql-client-8.0.19 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 746020 Depends: libtinfo6, gensoft-gcc-9.2.0, libncurses6, libcrypt1, libc6, gensoft-pcre2-10.34, libssl1.1 Filename: pool/main/gensoft-mysql-client-8.0.19_2.0_amd64.deb Size: 295366072 MD5sum: 7210dc2c3ff1baedf23816d545ee3322 SHA1: 17a6a844e3e5c0ff717ad6b10d5e45d0c7535cf5 SHA256: 26a1b3727278926594621998222cd3b21649eb7214da61cfcc55853aec41c954 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MySQL is a widely used and fast SQL database server. Server is not provided by this installation License: unknown Vendor: Institut Pasteur Package: gensoft-nanofilt-2.8.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 153387 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-nanofilt-2.8.0_1.0_amd64.deb Size: 46014718 MD5sum: 15fab4f11887795dafc94a53076b9ad1 SHA1: 601207742dbdc2e75e21d06913d4a029f165871c SHA256: 3521fd630e45f9bafa476e98c6d429f23084e370fd9657ad9d360aed77d8ac18 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Filtering and trimming of long read sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-nanoplot-1.43.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 598558 Depends: libgcc-s1, gensoft-adm-python-3.8.1, zlib1g, libc6, libstdc++6 Filename: pool/main/gensoft-nanoplot-1.43.0_1.0_amd64.deb Size: 171877162 MD5sum: 4eb624ef0ff1539af7ead1fc7b18fc4f SHA1: 8f04da8697f32e85a9632ac1711a45206b0c3bd4 SHA256: ca9cbe1fce828eeaf1a89f5d6426e5c6b15dab3982bcb72d37575a10ef346863 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Plotting tool for long read sequencing data and alignments. License: unknown Vendor: Institut Pasteur Package: gensoft-nanoplot-1.44.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 598486 Depends: libstdc++6, libgcc-s1, libc6, gensoft-adm-python-3.8.1, zlib1g Filename: pool/main/gensoft-nanoplot-1.44.0_1.0_amd64.deb Size: 171836582 MD5sum: 420e6f6c7c111179db2009a534b90fc4 SHA1: 739dbc93692b8a542d4b4579b6f94db90859eb1b SHA256: 30f557d45e1844a6075c58b2356e22f055e3ad6ffa197be9be1d23bc48857077 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Plotting tool for long read sequencing data and alignments. License: unknown Vendor: Institut Pasteur Package: gensoft-nanopolish-0.12.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 531614 Depends: gensoft-adm-python-3.8.1, gensoft-expat-2.2.9, gensoft-gcc-9.2.0, gensoft-hdf5-1.10.6, gensoft-htslib-1.10, libc6, gensoft-adm-perl-5.30.1, gensoft-libxml2-2.9.10, libbz2-1.0, gensoft-libiconv-1.16, gensoft-curl-7.68.0, gensoft-xz-5.2.4, zlib1g Filename: pool/main/gensoft-nanopolish-0.12.0_1.0_amd64.deb Size: 165480620 MD5sum: 5d3a0885caf56c4677f9f1596750565e SHA1: 471b060b0922e2bc6bdfe6b147a99e795d2cc547 SHA256: 1ca15c7154bb281edfc7fdbe258273afc905d33625a344317bc880ac5277140e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more (see Nanopolish modules, below). License: unknown Vendor: Institut Pasteur Package: gensoft-nanopolish-0.13.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 531546 Depends: gensoft-xz-5.2.4, zlib1g, libbz2-1.0, gensoft-gcc-9.2.0, gensoft-curl-7.68.0, gensoft-htslib-1.10, gensoft-adm-perl-5.30.1, gensoft-libiconv-1.16, libc6, gensoft-adm-python-3.8.1, gensoft-expat-2.2.9, gensoft-libxml2-2.9.10, gensoft-hdf5-1.10.6 Filename: pool/main/gensoft-nanopolish-0.13.2_1.0_amd64.deb Size: 165469888 MD5sum: 36f676038730913694e22ae681d031a5 SHA1: 1a85e118bbd4658ab3e2f242c41ab807cca5b500 SHA256: 7a7f3cd8eaef7168d7b9a7b2b05dd0dddf742cb0b74199f9b2deba5a5c3c89a2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more (see Nanopolish modules, below). License: unknown Vendor: Institut Pasteur Package: gensoft-nanosv-1.2.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 84949 Depends: zlib1g, gensoft-adm-python-3.8.1, libc6, gensoft-sambamba-0.7.1 Filename: pool/main/gensoft-nanosv-1.2.4_1.0_amd64.deb Size: 25960352 MD5sum: c8452e719f8e6ef1b79866e0f347a12a SHA1: fdee26807f65f872fa6343cc097aba7ac9678c9a SHA256: cc8e494f0bdc487d633e43179ac7ab3187ab43cf763df60a40264ff05fb67959 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers. License: unknown Vendor: Institut Pasteur Package: gensoft-nauty-27r3 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 13596 Depends: libc6 Filename: pool/main/gensoft-nauty-27r3_1.0_amd64.deb Size: 6372680 MD5sum: ed503c67ee0dd3eee2392744e9fc9585 SHA1: 578c99b759f33cae0cb01c61a81664ed006df5ed SHA256: 4c220377adb0065ff69fd47650ae8fd504e5f1aed5eb4a7daba583d08eace3b5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: nauty and Traces are programs for computing automorphism groups of graphs and digraphs. They can also produce a canonical labelling License: unknown Vendor: Institut Pasteur Package: gensoft-ncbi-datasets-v2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 29467 Filename: pool/main/gensoft-ncbi-datasets-v2_1.0_amd64.deb Size: 14043306 MD5sum: 77df7f7c04365021eaf9904c1e04e0b3 SHA1: 8ac5ce37c693db42e13c540cf5d139e7636f813c SHA256: 87c79fbb320fc8781edd991d401032e53261b936e1c5efdcab32b9433994bb1a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a new resource that lets you easily gather data from across NCBI databases. License: unknown Vendor: Institut Pasteur Package: gensoft-ncbi-vdb-2.10.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 35400 Depends: gensoft-ngs-2.10.2, zlib1g, libc6, gensoft-libiconv-1.16, gensoft-libxml2-2.9.10, gensoft-xz-5.2.4 Filename: pool/main/gensoft-ncbi-vdb-2.10.2_1.0_amd64.deb Size: 10295472 MD5sum: 6da0fd2377389d8b8ea8e46969933ebc SHA1: c2b48538b66cc78f225b5a98f8af2fecd65b844b SHA256: 60f4b739652a7b99b264e85762c5214738a70578ef7f6e21041ececab01a4fa3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives. License: unknown Vendor: Institut Pasteur Package: gensoft-ncbi-vdb-2.11.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 41211 Depends: gensoft-libxml2-2.9.10, libc6, libbz2-1.0, gensoft-libiconv-1.16, zlib1g, gensoft-xz-5.2.4, gensoft-hdf5-1.10.6 Filename: pool/main/gensoft-ncbi-vdb-2.11.2_1.0_amd64.deb Size: 12498600 MD5sum: fe8a4df5a3ad881556e1dc14eebc1199 SHA1: 6c13a6d5e879851fed1cae015dd3e3314d36fee2 SHA256: 5b4fdac7a00e695d4edec86fb33e493db088da5e3e730744be9c4748d1b04c12 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives. License: unknown Vendor: Institut Pasteur Package: gensoft-ncbi-vdb-3.0.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 99069 Depends: gensoft-hdf5-1.10.6, gensoft-libiconv-1.16, gensoft-xz-5.2.4, zlib1g, libc6, gensoft-libxml2-2.9.10, libbz2-1.0 Filename: pool/main/gensoft-ncbi-vdb-3.0.0_1.0_amd64.deb Size: 29046874 MD5sum: ca755eff3f77b43790e109f6280ce11f SHA1: b5a80a0fd02fb9d0d2b34b63958b48d20a386a4e SHA256: 30092ba8c7c0f0bb94ebd1a14773778eabda62ad9c68bae69771b43f8a736b4d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives. 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License: unknown Vendor: Institut Pasteur Package: gensoft-ncbitools-20170106 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 555215 Depends: libc6 Filename: pool/main/gensoft-ncbitools-20170106_1.0_amd64.deb Size: 208402608 MD5sum: 8f79ff951cda9badac67917e4f4aa899 SHA1: bc69a218ccd58bce3edbc44632bb3b35b2afa546 SHA256: 7a3b85b821a6b5a603579dd9043a8f1e81002429b108a7af0f344464b84e4a0e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The ToolBox model and code is used extensively within NCBI for the internal pipelines and tools such as GenBank, Entrez, BLAST, Sequin, OMIM, RefSeq, and others License: unknown Vendor: Institut Pasteur Package: gensoft-ncoils-2.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 45 Depends: libc6 Filename: pool/main/gensoft-ncoils-2.2_1.0_amd64.deb Size: 11050 MD5sum: 77d31cb4d9ece70330ed7337c97bc9db SHA1: 0f66ad585031151818a86f993b86a925b99fc529 SHA256: eaf4e84d7326e07a550b3c360145f222314b341a32f13a3cc688030db735a0be Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score License: unknown Vendor: Institut Pasteur Package: gensoft-necat-0.0.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6448 Depends: gensoft-gcc-9.2.0, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-necat-0.0.1_2.0_amd64.deb Size: 2598444 MD5sum: 7e37deeefc0271a87c443ade23727845 SHA1: 5f2781f69d5d272738551b32a421a1381d24f32d SHA256: f395c3a4042a4a0d7c89d3ddd1b2255dcadb06888436e0e7f74ddbf5a8a73817 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: an error correction and de-novo assembly tool for Nanopore long noisy reads. License: unknown Vendor: Institut Pasteur Package: gensoft-nest-simulator-2.20.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 28098 Depends: gensoft-libneurosim-1.0.0, gensoft-openmpi-4.0.5, libtinfo5, gensoft-libtool-2.4.6, gensoft-gcc-9.2.0, gensoft-music-1.1.16, libc6, gensoft-gsl-2.6, libreadline8 Filename: pool/main/gensoft-nest-simulator-2.20.0_1.0_amd64.deb Size: 7154214 MD5sum: f3c6769f9815e630290ec654348f9fd0 SHA1: be5b2744b85900eee6c2fdf92e17d3ae4e79a269 SHA256: f3eb37c8df8e16a555a832aa9ca607f245750987a06e24550b7079ce306492aa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: NEST is a simulator for spiking neural network models that focuses on the dynamics, size and structure of neural systems rather than on the exact morphology of individual neurons License: unknown Vendor: Institut Pasteur Package: gensoft-netcdf-4.7.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4998 Depends: zlib1g, gensoft-hdf5-1.10.6, nasm, libssl1.1, libc6, gensoft-curl-7.68.0 Filename: pool/main/gensoft-netcdf-4.7.3_1.0_amd64.deb Size: 1369906 MD5sum: 8065f881b88f7b1083643feab88dd4cc SHA1: 5682682ff8b57f82a2db079605b93ba51d01e632 SHA256: d6af746d11566edc5d34a8554dadd840536ee2de3001a851b242bbd10556a9c9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. License: unknown Vendor: Institut Pasteur Package: gensoft-netcdf-cxx-4.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2024 Depends: gensoft-curl-7.68.0, gensoft-netcdf-4.7.3, gensoft-hdf5-1.10.6, gensoft-gcc-9.2.0, libc6, zlib1g, nasm Filename: pool/main/gensoft-netcdf-cxx-4.2_1.0_amd64.deb Size: 433596 MD5sum: 4bb0daddb71354fc7658ec4a7de4c670 SHA1: f64bb64990f7bfb4e60f1c0b94991df167eca822 SHA256: 2f0155e663156c1a30443edcfba88a51ca46858147969aae22d382863d61f270 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a netCDF-4 C++ library that depends on an installed netCDF-4 C library. License: unknown Vendor: Institut Pasteur Package: gensoft-netpbm-10.73.35 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 8292 Depends: gensoft-libtiff-4.1.0, gensoft-libpng-1.6.37, gensoft-libxml2-2.9.10, zlib1g, libc6, gensoft-xorg-libs-1.1, gensoft-xz-5.2.4, gensoft-libjpeg-turbo-2.0.6, gensoft-libiconv-1.16 Filename: pool/main/gensoft-netpbm-10.73.35_1.0_amd64.deb Size: 2275226 MD5sum: 312a1e68fbae7074060f74334f66142f SHA1: 328a6187eb9af69b0a855a3f176cce79b0ee22b8 SHA256: 6ad1ece040462622b630f83a4c39ec401ef97e70db5f26b2fe54b9f84b966dcc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Netpbm is a toolkit for manipulation of graphic images, including conversion of images between a variety of different formats. There are over 300 separate tools in the package including converters for about 100 graphics formats. License: unknown Vendor: Institut Pasteur Package: gensoft-nettle-3.5.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 30540 Depends: libc6, gensoft-gmp-6.2.0 Filename: pool/main/gensoft-nettle-3.5.1_1.0_amd64.deb Size: 8826760 MD5sum: d2f728692d41575dcdb71969b556f16f SHA1: 6f4986fb015148b79cde55bffaa0616b2219c09a SHA256: b337f21513009af98065585d574c0a3c7f4b1aff5187995aadc6d7eb315824d0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Nettle is a cryptographic library that is designed to fit easily in more or less any context. In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space. License: unknown Vendor: Institut Pasteur Package: gensoft-networkanalysis-2.0.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 18877 Depends: gensoft-graalvm-ce-java11-20.0.0 Filename: pool/main/gensoft-networkanalysis-2.0.2_1.0_amd64.deb Size: 17533596 MD5sum: 516e6338e1d22349a1ddd9d4765dcb39 SHA1: 6ec2f7589c61a0bb1af12878e4c2ebdef157c7f7 SHA256: b4bb6d4ad400f9a0f5c8325871aae390d959a0274f5c5425000bd9762d41f22a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Java package that provides data structures and algorithms for network analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-neuma-1.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 110 Depends: gensoft-adm-perl-5.30.1, gensoft-bowtie-1.2.3 Filename: pool/main/gensoft-neuma-1.2.1_1.0_amd64.deb Size: 24024 MD5sum: cc40c3616ea8d6a7a892bb7de1173221 SHA1: 423a8a02994abc771c0755d710d900f2761fcfdd SHA256: d64f6948476a609380f8568c7c3b2f5e40ff7c7b89a35a9e44df1e75e879380b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Normalization by Expected Uniquely Mappble Area License: unknown Vendor: Institut Pasteur Package: gensoft-newick-utils-1.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2634 Depends: gensoft-lua-5.1.4, gensoft-libxml2-2.9.10, gensoft-libiconv-1.16, zlib1g, libc6, gensoft-xz-5.2.4 Filename: pool/main/gensoft-newick-utils-1.6_1.0_amd64.deb Size: 1466344 MD5sum: 99b1ac6ac485a4eff460e83db91021c2 SHA1: c0804c63431d4b878f7d578d46bb8f280a51d875 SHA256: 16fdb443e5900a129d257911f3d5729db18141897740dc0bf1498b288ce2f790 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees. Functions include re-rooting, extracting subtrees, trimming, pruning, condensing, drawing (ASCII graphics or SVG). License: unknown Vendor: Institut Pasteur Package: gensoft-nextdenovo-2.5.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 22137 Depends: libssl1.1, gensoft-adm-python-3.8.1, libc6, zlib1g, gensoft-curl-7.68.0 Filename: pool/main/gensoft-nextdenovo-2.5.2_1.0_amd64.deb Size: 7342628 MD5sum: 99f18a5a2b6136ffed810305339d0c9d SHA1: 36d8a83a19bed0e12fa4026a1615d84732030325 SHA256: 24053635437522fde87cc3d9e441f761f898bf132f8b34e01326ff325437e254 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: string graph-based de novo assembler for long reads. License: unknown Vendor: Institut Pasteur Package: gensoft-nextflow-20.01.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 37768 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-nextflow-20.01.0_1.0_amd64.deb Size: 34157964 MD5sum: 6e555eb11c087da0ddda323afc11de0d SHA1: 629422652d7d98489e9d963f7d8f27457fccde92 SHA256: 61715f8d80bb443efef30f9f524f9681d3ea1ba8eaa2046a41641097f4c19d5a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages. License: unknown Vendor: Institut Pasteur Package: gensoft-nextflow-23.10.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 31769 Depends: libc6, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-nextflow-23.10.3_1.0_amd64.deb Size: 28883774 MD5sum: 6fc777ddd715fc1f17d976b6409bb9ee SHA1: 9891e130e40a99db41125eb40198eddf622cc003 SHA256: d7093dce035252e33fbb5ba695d5041eb829b33a5b46620cdddcd4e6a0816a32 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a workflow system for creating scalable, portable, and reproducible workflows based on dataflow programming model License: unknown Vendor: Institut Pasteur Package: gensoft-nextflow-24.04.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 35688 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-nextflow-24.04.2_1.0_amd64.deb Size: 32238964 MD5sum: ddfcaed24c1ad573bb5c990dc08cbcaf SHA1: dad21a77ce49d95f46ae770022d4ed76395310f7 SHA256: e49c7f898b174051e29809295600d60037bb7b388b36c21f8a1b93ad610856bc Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a workflow system for creating scalable, portable, and reproducible workflows based on dataflow programming model License: unknown Vendor: Institut Pasteur Package: gensoft-nextflow-24.10.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 33576 Depends: gensoft-graalvm-ce-java23-23.0.1, libc6 Filename: pool/main/gensoft-nextflow-24.10.3_1.0_amd64.deb Size: 30902642 MD5sum: 1384a7ce471f51878bd57207b63cf575 SHA1: 83cd432a6d91cf55a8e7babcf7cbe5c473e4f5d3 SHA256: dbf08a3807b0b05c4751e6a39c1bd90e36dc5a34b600d5e72e24a637dae09099 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a workflow system for creating scalable, portable, and reproducible workflows based on dataflow programming model License: unknown Vendor: Institut Pasteur Package: gensoft-nextpolish-1.4.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 24522 Depends: zlib1g, gensoft-adm-python-3.8.1, gensoft-xz-5.2.5, libbz2-1.0, libc6 Filename: pool/main/gensoft-nextpolish-1.4.1_1.0_amd64.deb Size: 8279818 MD5sum: 0ee9d6f2eb20b7022f4684bfb467a39b SHA1: 2fcc7ffff735e2598d36b68bdb3d70b24f5dedcf SHA256: a290f561ddbaba82e0f399cc72df7400e5a0419e2448108e1bb3162e4b8b6a97 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: NextPolish is used to fix base errors (SNV/Indel) in the genome generated by noisy long reads, it can be used with short read data only or long read data only or a combination of both. License: unknown Vendor: Institut Pasteur Package: gensoft-ngmlr-0.2.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 9880 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-ngmlr-0.2.7_1.0_amd64.deb Size: 1923598 MD5sum: fa27194ff4adbe7ebcd453f079e2d695 SHA1: a8445d7f87b2ffa015b191940fd3a47f698d2875 SHA256: a9e1fa886cba82e1379bb83cb2c2271caed99c8d7527bb5e6b17baefc257ffa7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to correctly align reads spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and a banded Smith-Waterman alignment algorithm with a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments. The gap model allows ngmlr to account for both the sequencing error and real genomic variations at the same time and makes it especially effective at more precisely identifying the position of breakpoints stemming from structural variations. The k-mer search helps to detect and split reads that cannot be aligned linearly, enabling ngmlr to reliably align reads to a wide range of different structural variations including nested SVs (e.g. inversions flanked by deletions). License: unknown Vendor: Institut Pasteur Package: gensoft-ngs-2.10.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2959 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-ngs-2.10.2_1.0_amd64.deb Size: 684756 MD5sum: 2a6083081246b2b57c0fe4c4e30b3420 SHA1: 970d52b4135c31d11c18316b0e65787bf5295bcf SHA256: bf19c711da402537471a4042d9c08c1064430cd78dd023286d0f2fdbc5d41479 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end engines License: unknown Vendor: Institut Pasteur Package: gensoft-ngs-2.11.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 2963 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-ngs-2.11.2_1.0_amd64.deb Size: 683790 MD5sum: be7475cc96c3e7f535b4972ca40fba9d SHA1: 867fc450b9de9d4a67eb164f53b3ca35509156d8 SHA256: e161736662b56c2e6f6656a5112f49a8f2b82b635deb154468545f2f9f3c433b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end engines License: unknown Vendor: Institut Pasteur Package: gensoft-ngsplot-2.63 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 283203 Depends: gensoft-xz-5.2.4, gensoft-r-3.6.2, gensoft-diffreps-1.55.6, gensoft-gcc-9.2.0, gensoft-adm-perl-5.30.1, libssl1.1, gensoft-adm-python-2.7.17, gensoft-curl-7.68.0, libstdc++, libc6, gensoft-libxml2-2.9.10, zlib1g, gensoft-libiconv-1.16 Filename: pool/main/gensoft-ngsplot-2.63_1.0_amd64.deb Size: 105432518 MD5sum: 713fd2d944affbaa3cd43b03fd401e8b SHA1: fb8d9e9b7a3daa2a86414da90ec13d946ec87f14 SHA256: 871bd391fac0892cacfed09d60f5e18065ed3d5fc27f263c85de0b7f1cf39997 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program that allows you to easily visualize your next-generation sequencing (NGS) samples at functional genomic regions. License: unknown Vendor: Institut Pasteur Package: gensoft-nh-phylobayes-0.2.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 182128 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-nh-phylobayes-0.2.3_1.0_amd64.deb Size: 57443456 MD5sum: c7a9af23a9f10bc7f09fd55cd74d5016 SHA1: d67981c405cb62b973b82c21e75a1562fb9fdd46 SHA256: 46e4398b8e0a0e0512da5325195befe537b19d95dd384f99f350d8f74fa6061f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Models for phylogenetic reconstruction. The phylogenetic models BP (Blanquart and Lartillot 2006) and CAT+BP (Blanquart and Lartillot 2008) implement non-stationary and non-homogeneous stochastic processes for both amino-acid and nucleotide substitutions. Both the models allow to fit global compositional variations along the phylogenetic tree branches, and CAT+BP moreover implements the CAT model component (Lartillot and Philippe 2004) estimating a mixture of site specific substitution processes. Those models are implemented into the NH_PhyloBayes package for phylogenetic reconstruction. License: unknown Vendor: Institut Pasteur Package: gensoft-nhphyml-na Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 871 Depends: libc6 Filename: pool/main/gensoft-nhphyml-na_1.0_amd64.deb Size: 331800 MD5sum: c7cc1e72cf2dd3bb41b0eca680cdba42 SHA1: c1d6ed732439556df83f79701eb62e2d7160dea5 SHA256: bb7bcb1f9bab8a8ed0355d44f33b1666b350c82c1a5d15e4de78d1f6c1e458c1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program built to compute phylogenetic trees under the non stationary, non homogeneous model of Galtier and Gouy (1998). License: unknown Vendor: Institut Pasteur Package: gensoft-nim-1.0.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 41670 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-nim-1.0.6_1.0_amd64.deb Size: 9213778 MD5sum: 23d911889b1b290b6137898c4b876947 SHA1: 13112ad2b3cf9a1bbe659233133444e25f1ca591 SHA256: 20a5d794b2e9596e7eb64bacf86c9d0159bbe7a0ee53ae0ed3ccca5964c1f451 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Nim is a systems and applications programming language. Statically typed and compiled, it provides unparalleled performance in an elegant package. License: unknown Vendor: Institut Pasteur Package: gensoft-nim-1.2.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 41126 Depends: gensoft-gcc-9.2.0, gensoft-gdb-9.2, libc6 Filename: pool/main/gensoft-nim-1.2.6_1.0_amd64.deb Size: 9002176 MD5sum: 2f5dba6da3fc27fff867066dccd8b63b SHA1: 97ec1d3cfded3f5d73777e54bc2004d138d0e416 SHA256: fa3a7f096d002f53c9d6d5103edc56c3e72e30fa2225b768250e62d2bcbdb81b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Nim is a systems and applications programming language. Statically typed and compiled, it provides unparalleled performance in an elegant package. License: unknown Vendor: Institut Pasteur Package: gensoft-nim-1.4.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 20895 Depends: gensoft-gcc-9.2.0, libc6, gensoft-gdb-9.2 Filename: pool/main/gensoft-nim-1.4.2_1.0_amd64.deb Size: 7172976 MD5sum: c1d4bcee75e1b62cb4165a5d4c9aba9c SHA1: 1f0e50f9828032fce0d30c6ce3256cc1f165af26 SHA256: b9ddad319f3c58bbde9bbdad98c4024f44621d274f0a02943465b73e13d6eb7b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Nim is a systems and applications programming language. Statically typed and compiled, it provides unparalleled performance in an elegant package. License: unknown Vendor: Institut Pasteur Package: gensoft-ninja-1.10.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6743 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-ninja-1.10.0_1.0_amd64.deb Size: 2170612 MD5sum: d9c905953a2fe47d78e3d3ca5535d8ea SHA1: d3433177f3c0a2c6b1240ff8bee08a87b5ebb0fc SHA256: 238d55b5731f1e4623deb9c14e9155286ebe0a67e265186f0a4fa595b90c826f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Ninja is yet another build system. It takes as input the interdependencies of files (typically source code and output executables) and orchestrates building them, quickly. License: unknown Vendor: Institut Pasteur Package: gensoft-nlopt-2.6.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 798 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-nlopt-2.6.1_1.0_amd64.deb Size: 335678 MD5sum: 0ff4a86bfb0f62a9861bc440c7c8745e SHA1: b5eb0727f2e94f41bedf318d635e16442bf42445 SHA256: 734c927310efba69df16a181836e5b33a75dc8e5f1a49c370109cc2240c3cdc4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. License: unknown Vendor: Institut Pasteur Package: gensoft-nodejs-12.16.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 70763 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-nodejs-12.16.0_1.0_amd64.deb Size: 23479130 MD5sum: cb78d4108eada273d340563649b5b32c SHA1: 68ba304a83cd3e33336fc624fb70f9825bb1032c SHA256: f6e53be7fd1a7434b02c33c74930a98c611d333b4fb2b13431119714e66c5be6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Node.js is a JavaScript runtime built on Chrome V8 JavaScript engine License: unknown Vendor: Institut Pasteur Package: gensoft-nodejs-14.15.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 97617 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-nodejs-14.15.1_1.0_amd64.deb Size: 34576770 MD5sum: 11e5c7256752be977d08f23e8a940ae6 SHA1: 1d3359b01e099bcdf5f6137229ecb8910956f70c SHA256: 494788d4cdcb6977b13430fcdf399e045f13697980e33e2eb9ec7c5e5e527511 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Node.js is a JavaScript runtime built on Chrome V8 JavaScript engine License: unknown Vendor: Institut Pasteur Package: gensoft-noisy-1.5.12 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7896 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-noisy-1.5.12_1.0_amd64.deb Size: 1925616 MD5sum: 70c401f1749e2723ee3a35d5f8f1412e SHA1: 68f025417e7d5fc81a93efbea0bb787ecdd74001 SHA256: c75246d4c1d26a3c4f549c2efa4fac76b9f80af4535597469aec0c6071338aeb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: identify homo-plastic characters in multiple sequence alignments License: unknown Vendor: Institut Pasteur Package: gensoft-nps-1.3.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 88676 Depends: libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-nps-1.3.2_1.0_amd64.deb Size: 26613568 MD5sum: 3d52f2684636009c98e14b94a42d8c27 SHA1: a98b52da1950480684ba5fc83a1736c9bd0d0923 SHA256: 87fe838273fc7e15004214be9be9fdf4b116b54d5968263c05a351015e179014 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Nucleosome Positioning from Sequencing License: unknown Vendor: Institut Pasteur Package: gensoft-ntcard-1.2.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 155 Depends: zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-ntcard-1.2.2_1.0_amd64.deb Size: 57330 MD5sum: a2049969e3ddd3c1652a3030608f74b5 SHA1: 5e4f8c87c4bc1436f0532a41480ecf38ae583969 SHA256: 5ba2019531f81a23981b009b76365449fdcce33a4f1b77ca2f8b3d0086c4896b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a streaming algorithm for estimating the frequencies of k-mers in genomics datasets. License: unknown Vendor: Institut Pasteur Package: gensoft-ntl-11.4.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 133067 Depends: gensoft-gmp-6.2.0, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-ntl-11.4.3_1.0_amd64.deb Size: 29007720 MD5sum: 7d76cd7808c05af732bff3677f6e4799 SHA1: 5835f32ff7fdfb160c316dbc0cf71ccebc4d6c62 SHA256: c2a0a52e05533ac6d6bb53246a5f3a352724e3195b56aeb97191a9d55140b159 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: NTL is a high-performance, portable C++ library providing data structures and algorithms for manipulating signed, arbitrary length integers, and for vectors, matrices, and polynomials over the integers and over finite fields. License: unknown Vendor: Institut Pasteur Package: gensoft-nucleoatac-0.3.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 247326 Depends: gensoft-adm-python-2.7.17, libstdc++6, libc6, libgcc-s1 Filename: pool/main/gensoft-nucleoatac-0.3.4_1.0_amd64.deb Size: 76336452 MD5sum: 1e0329877e041a721246317c428438d5 SHA1: d85745f9630bdd9fd7bd89742fac351aad6a11f2 SHA256: 5673dd8b363b411c365f52e00613c9cdd8c5adfc82b28497773453558a1a4fd4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: NucleoATAC is a python package for calling nucleosome positions and occupancy using ATAC-Seq data. Also includes general scripts for working with paired-end ATAC-Seq data (or potentially other paired-end data). License: unknown Vendor: Institut Pasteur Package: gensoft-numactl-2.0.14 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1063 Depends: libc6 Filename: pool/main/gensoft-numactl-2.0.14_1.0_amd64.deb Size: 343018 MD5sum: f7fb16d8028914a84858c20ad982e7dd SHA1: f1795363897a742c1c32e78c0aec07c8bf6ddf35 SHA256: 69394dcb5a9c3843819b59b1dd5967a0fdbcb469c0b3301a5cc0719bad4d0e57 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Simple NUMA policy support. It consists of a numactl program to run other programs with a specific NUMA policy and a libnuma shared library (NUMA API) to set NUMA policy in applications License: unknown Vendor: Institut Pasteur Package: gensoft-numactl-2.0.19 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1114 Depends: libc6 Filename: pool/main/gensoft-numactl-2.0.19_1.0_amd64.deb Size: 359416 MD5sum: ff5ef138a9da50aaf6ef8cf677e41565 SHA1: d44929fb8900248a3933af5c4beab3c85c7c4b57 SHA256: e7224c8ed5bc5d6688961886116e2a301d7789db08cf41e9e9823b9a1aa1c594 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Simple NUMA policy support. It consists of a numactl program to run other programs with a specific NUMA policy and a libnuma shared library (NUMA API) to set NUMA policy in applications License: unknown Vendor: Institut Pasteur Package: gensoft-nupack-3.0.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 13313 Depends: libc6 Filename: pool/main/gensoft-nupack-3.0.6_1.0_amd64.deb Size: 10529770 MD5sum: 07fbf2add7511a9e45660857d32e7c50 SHA1: 927ff01b300dd09e97500237bfe53cde43181b3f SHA256: 1efa5ae8807d84a6f51ef044723602e53301ba8aaad4a1cd4a61dc0460af38bc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: software suite for the analysis and design of nucleic acid structures, devices, and systems. License: unknown Vendor: Institut Pasteur Package: gensoft-nvtop-1.2.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 110 Depends: libncurses6, libc6, libncursesw6, libtinfo6 Filename: pool/main/gensoft-nvtop-1.2.2_1.0_amd64.deb Size: 50160 MD5sum: 68fb63aca662c2342377409839a4f913 SHA1: d75bac8f8a4a4b20560e5764140856e7e3850423 SHA256: 2f3245653eb741ddab5a36b4ecabd8d3b5ebfc6d492a7e8ff7a3497fe8674de1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Simple, rapid, and statistically efficient test for recombination. License: unknown Vendor: Institut Pasteur Package: gensoft-oases-0.2.09 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1072 Depends: libc6, gensoft-adm-python-2.7.17, zlib1g Filename: pool/main/gensoft-oases-0.2.09_1.0_amd64.deb Size: 721138 MD5sum: 91eb649c24398d7bda02943f95291e03 SHA1: 82f499f6125d5f2a669ce17dc98ac56929e33a30 SHA256: b15d6e01e22cddd4e653477cbeb7cfc0e13d95b06fb59f93f82c14a4b31d818a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: De novo transcriptome assembler for very short reads. Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. License: unknown Vendor: Institut Pasteur Package: gensoft-ocaml-4.10.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 389313 Depends: libc6 Filename: pool/main/gensoft-ocaml-4.10.0_1.0_amd64.deb Size: 141575246 MD5sum: 1dc2bb8b8fb3d103169682efde11ce63 SHA1: 79265dd7da8804441f87743fbb86e629408a1e81 SHA256: 7cf076c457c7bfbdb9e2fa705392f483ba0542100c9e8c370f1afbbce3b6ce50 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: OCaml is an implementation of the ML language, based on the Caml Light dialect extended with a complete class-based object system and a powerful module system in the style of Standard ML. 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License: unknown Vendor: Institut Pasteur Package: gensoft-ode-0.13 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 31895 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-ode-0.13_1.0_amd64.deb Size: 7934926 MD5sum: b8be2d2e8a0eff1fd88f9d6ea84c2ca1 SHA1: dae50e8c370be230c7ebeba3a35a11cffad5b4fb SHA256: 2a16af4b1a604c7a00302d0911bb3565a150191fa3e5bb3c54a1e5318f2c5427 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an open source, high performance library for simulating rigid body dynamics License: unknown Vendor: Institut Pasteur Package: gensoft-odgi-0.6.3 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1411615 Depends: gensoft-jemalloc-5.2.1, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-odgi-0.6.3_1.0_amd64.deb Size: 267320474 MD5sum: 0d676a7a691d6c2efb731778f30afe19 SHA1: 9b4baea234cc73669008dda9b5155eab3117e6ad SHA256: 8a61291719c15182f9fd3151fccae19911086f901b1cf8a65fd92b45a9ed551a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: optimized dynamic genome graph implementation - a toolkit for understanding pangenome graphs License: unknown Vendor: Institut Pasteur Package: gensoft-odgi-0.7.3 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 52933 Depends: gensoft-jemalloc-5.2.1, gensoft-gcc-9.2.0, libc6, gensoft-sdsl-lite-2.3.1, gensoft-libdivsufsort-2.0.1 Filename: pool/main/gensoft-odgi-0.7.3_1.0_amd64.deb Size: 15637654 MD5sum: 4ffe867c2cd35addc0b6b78afaeecb36 SHA1: 57a012d3f6fe91fe4af95cc2163bd0e9a21d6814 SHA256: cbb20e286254a648603c556b7bbc28dba666c27ddd6304ff985deae748e237d2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: optimized dynamic genome graph implementation - a toolkit for understanding pangenome graphs License: unknown Vendor: Institut Pasteur Package: gensoft-odgi-0.8.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 54030 Depends: libc6, gensoft-gcc-9.2.0, gensoft-libdivsufsort-2.0.1, gensoft-jemalloc-5.2.1, gensoft-sdsl-lite-2.3.1 Filename: pool/main/gensoft-odgi-0.8.2_1.0_amd64.deb Size: 15953800 MD5sum: 6d46253ad5100c25c4c21fc1794f940f SHA1: da208c8e666518eafee856fa2c7c679e4746fb66 SHA256: 4d916f8a04fe1f89138cd54274feceba27ba94550c11af9b6427e98e6f8a4dfb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: optimized dynamic genome graph implementation - a toolkit for understanding pangenome graphs License: unknown Vendor: Institut Pasteur Package: gensoft-odin-0.4.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 370585 Depends: gensoft-ucsc-tools-v390, zlib1g, gensoft-adm-python-2.7.17, libgcc-s1, libc6, libstdc++6 Filename: pool/main/gensoft-odin-0.4.1_1.0_amd64.deb Size: 110682410 MD5sum: 11076874ce882f6d7326ff6352b67795 SHA1: 63c30ad237c777ddf23b27946e0b5fcf190e4dc3 SHA256: f087eb0c0a574201c0482b90af33e4a1b1d7055f91e74044d0ccaeb34a2d6a26 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an HMM-based approach to detect and analyse differential peaks in pairs of ChIP-seq data. ODIN performs genomic signal processing, peak calling and p-value calculation in an integrated framework License: unknown Vendor: Institut Pasteur Package: gensoft-ogri-1.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 135 Depends: gensoft-prodigal-2.6.3, gensoft-blast+-2.12.0, gensoft-gawk-5.0.1 Filename: pool/main/gensoft-ogri-1.0_1.0_amd64.deb Size: 29404 MD5sum: dc31bd91bfac58403b3beeb99eacf026 SHA1: 34c39ee4e031304c5fb0a0fa0eca2b020045e256 SHA256: 97722b81817730b0a7481f0c23dc971608c2cc998895d2328a57ef0732789f4c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Transmembrane topology prediction License: unknown Vendor: Institut Pasteur Package: gensoft-ogri-1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 135 Depends: gensoft-prodigal-2.6.3.pp1, gensoft-blast+-2.13.0, gensoft-gawk-5.0.1 Filename: pool/main/gensoft-ogri-1.1_1.0_amd64.deb Size: 29546 MD5sum: 3b2d5e65f61e6dc3a9fe30d763384799 SHA1: 1cf14e171d79b6dbd929b609b845a2c8847d44bd SHA256: 57be5875f6a96c18840bda23cba77552a0c8b5a5b706a7b5d7749195a7cc5477 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Transmembrane topology prediction License: unknown Vendor: Institut Pasteur Package: gensoft-ogri-1.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 138 Depends: blast+/2.15.0, gensoft-gawk-5.0.1, gawk/5.0.1, gensoft-prodigal-2.6.3.pp1, prodigal/2.6.3.pp1, gensoft-blast+-2.15.0 Filename: pool/main/gensoft-ogri-1.2_1.0_amd64.deb Size: 30448 MD5sum: 2084627d6403177aade7e394f7b568f7 SHA1: a2b351ef6fcc7717a431714081e345784ffaddbd SHA256: 345e188a330100dad4fb61326f19f26e929cbf3c50e2850d356b78bd2c08303b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Transmembrane topology prediction License: unknown Vendor: Institut Pasteur Package: gensoft-ohana-0.1.7666.41124 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 200439 Depends: gensoft-lapack-3.10.0, libstdc++6, gensoft-gcc-9.2.0, libc6, gensoft-adm-python-2.7.17, libgcc-s1 Filename: pool/main/gensoft-ohana-0.1.7666.41124_1.0_amd64.deb Size: 65170152 MD5sum: eb75ea3648bb204f7ed699513ae6de76 SHA1: 4535ee29d7f575a1c364b38d880406a4cb3e1fd5 SHA256: 28535009e14b220e0022f52105a51352d3492cb2ff9863eb5d80d1ef0cc00711 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a suite of software for analyzing population structure and admixture history using unsupervised learning methods. License: unknown Vendor: Institut Pasteur Package: gensoft-oma-2.5.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 126036 Filename: pool/main/gensoft-oma-2.5.0_2.0_amd64.deb Size: 39600416 MD5sum: db2dbe44127de2aae8fc010042d70401 SHA1: 7a26945d81117096deb56361a896557e1f2b0dc6 SHA256: 7314c189b2207762757464ab9d76bdc9877aa24e780d7ce8a74a989523c871a6 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a standalone package that can infer orthologs using the OMA algorithm on custom genomes. License: unknown Vendor: Institut Pasteur Package: gensoft-omark-0.3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 600007 Depends: libgcc-s1, libc6, libstdc++6, libgomp1, gensoft-adm-python-3.10.7, zlib1g Filename: pool/main/gensoft-omark-0.3.0_1.0_amd64.deb Size: 192772610 MD5sum: d07f15394e97b8c1fc184812199037da SHA1: ee39a3680149d747ea8d4ba14c52399d02a24531 SHA256: ac6660d735f98936f98f67d9c99191484f071d0196211be8eab58146bc2bcf9c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: software for proteome (protein-coding gene repertoire) quality assessment. License: unknown Vendor: Institut Pasteur Package: gensoft-omegamap-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1747 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-omegamap-1.0_1.0_amd64.deb Size: 859840 MD5sum: 526fa2916e2aa070faece6cf87d13fae SHA1: f5d52e91840233ab7814f52d133d8d186402fb1e SHA256: 071d6b62511b2e995e190e348c5fe9f704e8f564abe06954a40c28bfff253526 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program for detecting natural selection and recombination in DNA or RNA sequences. It is based on a model of population genetics and molecular evolution. The signature of natural selection is detected using the dN/dS ratio (which measures the relative excess of non-synonymous to synonymous polymorphism) and the signature of recombination is detected from the patterns of linkage disequilibrium. License: unknown Vendor: Institut Pasteur Package: gensoft-oncotator-1.9.9.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 220920 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-oncotator-1.9.9.0_1.0_amd64.deb Size: 63503732 MD5sum: ee9952b427265762ef26bc0e1c97046f SHA1: 38808457155029b6bd8f227e85894e6bd4dfaa35 SHA256: a005093c34121c554d95ae71ed49e26714cc206c3626133bfae1c2d813047b17 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Oncotator is a tool for annotating human genomic point mutations and indels with data relevant to cancer researchers. 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License: unknown Vendor: Institut Pasteur Package: gensoft-openblas-0.3.21 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 44497 Depends: gensoft-cmake-3.19.4, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-openblas-0.3.21_1.0_amd64.deb Size: 12137256 MD5sum: 9ea73bcb804b4043eadaa031be83a4ce SHA1: d79863487c0be3d144a1d460f40ea3fcce281231 SHA256: dabd946fd38aa0caa4c7f19356e5413c590176fd1522f49318ad4767f89fff0e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. compiled with openmp support License: unknown Vendor: Institut Pasteur Package: gensoft-openblas-0.3.26 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 88269 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-openblas-0.3.26_1.0_amd64.deb Size: 23684320 MD5sum: b652490b9a1d59f618969206a0f50b90 SHA1: f5bff85b39bbfa13b40ce079c9a192e79a3543ad SHA256: defcb52fb0e7003ac5be0a7646cc02207df0c3c4d892053a5faf885311771805 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. compiled with openmp support License: unknown Vendor: Institut Pasteur Package: gensoft-openblas-0.3.28 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 88791 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-openblas-0.3.28_1.0_amd64.deb Size: 23780678 MD5sum: 6ca76a02b02d2ef4ce3430a4e9b9108f SHA1: 50f84cc0c6f2cf0e745865d4d0accddbfa2aa41e SHA256: 93d349a4ac589455aa9fc33951f2765a9fecaf2296c6b3bbf2c4e196231d2a24 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. compiled with openmp support License: unknown Vendor: Institut Pasteur Package: gensoft-openblas-0.3.29 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 98888 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-openblas-0.3.29_1.0_amd64.deb Size: 25335230 MD5sum: d1faf5a8e3637e2997f298642d77cc82 SHA1: a9079cb6048edf2af2884570a90a2b0495f93bb3 SHA256: 450a7d1424c3d6aa6e0c2f277d827779ae6708fda833e3b1533b4e9f1c80cdb9 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. compiled with openmp support License: unknown Vendor: Institut Pasteur Package: gensoft-openblas-0.3.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 43112 Depends: gensoft-cmake-3.16.3, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-openblas-0.3.7_1.0_amd64.deb Size: 11704120 MD5sum: 5bc8dd54551c23856ef0c4bcf4b20c74 SHA1: 5adc96b47e524ec3f5936ddc9edc9c0751e6bcb3 SHA256: a3712998581869484ad8c23b2618f7c57df9f48ed78deafe3ec79b47b297fa13 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. compiled with openmp support License: unknown Vendor: Institut Pasteur Package: gensoft-opencl-sdk-light-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 496 Filename: pool/main/gensoft-opencl-sdk-light-1.0_1.0_amd64.deb Size: 70152 MD5sum: 95495dca43787e6711b96348ee62d0ed SHA1: b2500ac15d64ee1f81d1b933cace6b4d7801e1d2 SHA256: 447f8b0ff4a230bcbd278eb4a81f15b06135293de8a6cdda380832a6f3f8df49 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: OpenCL SDK Lite that only contains headers and library files License: unknown Vendor: Institut Pasteur Package: gensoft-openfold-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 8224600 Depends: gensoft-apptainer-1.1.5 Filename: pool/main/gensoft-openfold-1.0.0_1.0_amd64.deb Size: 8401120236 MD5sum: 9757d75442e86e5d52f59ee6823c74d7 SHA1: 4b0f1883f966bab16f18d5908a1d84f5ef1bb689 SHA256: 16d544b672480e99e42b57ee2e6c8e3aa4c4e4d7576b9e4f16ce3f2f2b7bd433 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2 License: unknown Vendor: Institut Pasteur Package: gensoft-openjpeg-2.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 14892 Depends: gensoft-libtiff-4.1.0, gensoft-libpng-1.6.37, gensoft-xz-5.2.4, gensoft-libjpeg-turbo-2.0.4, zlib1g, gensoft-lcms2-2.9, libc6 Filename: pool/main/gensoft-openjpeg-2.3.1_1.0_amd64.deb Size: 2259764 MD5sum: 7a87cb2116b4b744ff91c52dbe8e3e7a SHA1: 7d29b857a5e14cec4c1279fe6965f2f1d5ec7031 SHA256: d4c62f62f85a17f3c857c630fac590f9a167a109ff7fafc5e1b33ade1d242752 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: OpenJPEG is an open-source JPEG 2000 codec written in C language. License: unknown Vendor: Institut Pasteur Package: gensoft-openmm-7.5.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 184160 Depends: gensoft-gcc-9.2.0, libc6, gensoft-cuda-11.2, gensoft-adm-python-2.7.17, gensoft-fftw-3.3.8 Filename: pool/main/gensoft-openmm-7.5.1_1.0_amd64.deb Size: 44683962 MD5sum: 50df2fefe8eaab0f9410fe97358da4d0 SHA1: bdd55d068e92cca59b8e72e32e14504bf56b7cc3 SHA256: 2f761a037fde6e6ffb957966ef30927a0faf6e9268a4b678e60163e29fd5e6b5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a toolkit for molecular simulation using high performance GPU code. License: unknown Vendor: Institut Pasteur Package: gensoft-openmpi-4.0.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 16973 Depends: libnl-route-3-200, libnuma1, libibverbs1, librdmacm1, openssh-client, libc6, gensoft-ucx-1.9.0, libnl-3-200, zlib1g, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-openmpi-4.0.5_1.0_amd64.deb Size: 5395942 MD5sum: 1ee0b16418baa6dae94911d0c4778735 SHA1: 81f00c4c1da279e6e277a7f7975c885d058994d2 SHA256: e4fe799080f14b6f8a084bdcbe66a10071b489e4838994ba7d3307352762c43d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: open source Message Passing Interface implementation License: unknown Vendor: Institut Pasteur Package: gensoft-openmpi-4.1.5 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 17560 Depends: gensoft-gcc-9.2.0, gensoft-ucx-1.9.0, libc6, zlib1g, openssh-client, gensoft-adm-perl-5.30.1, libnuma1, libnl-route-3-200, libnl-3-200, librdmacm1, libibverbs1 Filename: pool/main/gensoft-openmpi-4.1.5_2.0_amd64.deb Size: 5562046 MD5sum: 2e09b0907350ebe0b76d543ca0fd314b SHA1: be46cd063d1d327aeb3706a6687e3462d3fdce32 SHA256: e582e6aa8dbf4a118e2927a7a28cac8be12243f77b467b991a4eab8e4e6aabcc Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: open source Message Passing Interface implementation License: unknown Vendor: Institut Pasteur Package: gensoft-openmpi-5.0.7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 99367 Depends: libnl-3-200, libnuma1, librdmacm1, gensoft-gcc-9.2.0, gensoft-adm-python-3.8.1, libibverbs1, libc6, gensoft-cuda-12.8, gensoft-ucx-1.18.0, zlib1g, libnl-route-3-200, openssh-client Filename: pool/main/gensoft-openmpi-5.0.7_1.0_amd64.deb Size: 27531628 MD5sum: 4dd8f0fe0c6bed0dfc306db5ce49269d SHA1: 1983d0fd41d81ec3f54b5dccb627486fa1b55081 SHA256: 12a57801e52da055dbd4f2c601cfcd3bd2fa139fed23feeae796219f8348df2e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: open source Message Passing Interface implementation License: unknown Vendor: Institut Pasteur Package: gensoft-openslide-3.4.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1252 Depends: gensoft-cairo-1.16.0, zlib1g, gensoft-sqlite-3.31.0, gensoft-xorg-libs-1.1, libbz2-1.0, gensoft-libtiff-4.1.0, libblkid1, gensoft-pixman-0.38.4, gensoft-xz-5.2.4, libmount1, gensoft-freetype-2.10.1, gensoft-pcre2-10.34, gensoft-glib-2.58.3, gensoft-fontconfig-2.13.91, gensoft-libxml2-2.9.10, gensoft-libpng-1.6.37, gensoft-expat-2.2.9, gensoft-libffi-3.3, gensoft-libiconv-1.16, gensoft-gdk-pixbuf-2.36.12, libc6, libselinux1, gensoft-openjpeg-2.3.1, gensoft-libjpeg-turbo-2.0.4, libpcre2-8-0 Filename: pool/main/gensoft-openslide-3.4.1_1.0_amd64.deb Size: 475380 MD5sum: e9861c91f4b111cb23027ecb7557217e SHA1: 552c75da62f3b2d33c6c5bacea5fe4dae612e188 SHA256: c6cc48cbd9b85c36bda481e05e9d5fe23a4077519735a45e1304bd96e7444879 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: OpenSlide is a C library that provides a simple interface to read whole-slide images (also known as virtual slides). License: unknown Vendor: Institut Pasteur Package: gensoft-orfm-0.7.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 41 Depends: libc6, zlib1g Filename: pool/main/gensoft-orfm-0.7.1_1.0_amd64.deb Size: 17438 MD5sum: da562b36a12593b16e42a517b77f3b9a SHA1: d8c23e3b0b59c8c624726d3918e10482777a0258 SHA256: 5da42bba7b4827f258068c7c760ab3a761daa6c1212b8471132eae0d25100647 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A simple and not slow open reading frame (ORF) caller. No bells or whistles like frameshift detection, just a straightforward goal of returning a FASTA file of open reading frames over a certain length from a FASTA/Q file of nucleotide sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-oritfinder-1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 44206 Depends: gensoft-blast+-2.2.31, gensoft-expat-2.4.1, gensoft-emboss-6.6.0, gensoft-libxml2-2.9.10, gensoft-hmmer-3.1b1, gensoft-libiconv-1.16 Filename: pool/main/gensoft-oritfinder-1.1_1.0_amd64.deb Size: 12362012 MD5sum: 08b5134a7ef6f1eeaa74600deb13d267 SHA1: d7ffa62cc48a93546998126c94340d3f0537c4d6 SHA256: f5108b49b097a726c2c59c7e4914bf11f1830c9005f045af6f6e7297d084a7f7 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements License: unknown Vendor: Institut Pasteur Package: gensoft-orthofinder-2.3.11 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 170090 Depends: gensoft-adm-python-2.7.17, gensoft-diamond-0.9.30, gensoft-mcl-14-137, libgcc-s1, gensoft-mafft-7.453, gensoft-iq-tree-1.6.12, gensoft-blast+-2.10.0, libstdc++6, libc6, gensoft-fasttree-2.1.11, gensoft-fastme-2.1.6.1, gensoft-muscle-3.8.1551 Filename: pool/main/gensoft-orthofinder-2.3.11_1.0_amd64.deb Size: 51980070 MD5sum: 3d7375ef66f8a69ad13e5cd74a730e5a SHA1: 087e6fa4b83da3a17a472b42869d6852a381c4c8 SHA256: 6a7e4cc05ac5708053806087d3453c7ccb93408c40afae487512856e1e56e7b7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics. It finds orthogroups and orthologs, infers rooted gene trees for all orthogroups and identifies all of the gene duplication events in those gene trees. It also infers a rooted species tree for the species being analysed and maps the gene duplication events from the gene trees to branches in the species tree. OrthoFinder also provides comprehensive statistics for comparative genomic analyses. OrthoFinder is simple to use and all you need to run it is a set of protein sequence files (one per species) in FASTA format. 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It also infers a rooted species tree for the species being analysed and maps the gene duplication events from the gene trees to branches in the species tree. OrthoFinder also provides comprehensive statistics for comparative genomic analyses. OrthoFinder is simple to use and all you need to run it is a set of protein sequence files (one per species) in FASTA format. 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It also infers a rooted species tree for the species being analysed and maps the gene duplication events from the gene trees to branches in the species tree. OrthoFinder also provides comprehensive statistics for comparative genomic analyses. OrthoFinder is simple to use and all you need to run it is a set of protein sequence files (one per species) in FASTA format. License: unknown Vendor: Institut Pasteur Package: gensoft-orthosnap-1.3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 103945 Depends: zlib1g, libc6, libgcc-s1, gensoft-adm-python-3.10.7 Filename: pool/main/gensoft-orthosnap-1.3.0_1.0_amd64.deb Size: 30308300 MD5sum: 18fca6f87cbece53eb4127933cc37593 SHA1: 810b121906272e206ae0617f42b37f41ba0b785d SHA256: 07ab6665e7ffbb4f3b3544e36a09e8ef169dc394b9bd8de266e82584976497dd Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees License: unknown Vendor: Institut Pasteur Package: gensoft-osi-0.108.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1303 Depends: gensoft-gcc-9.2.0, libc6, gensoft-coinutils-2.11.4, gensoft-lapack-3.9.0 Filename: pool/main/gensoft-osi-0.108.6_1.0_amd64.deb Size: 461346 MD5sum: a634d342e010c046a26192cc91d6e1a2 SHA1: 9d886873fe9d9de2e8f8ef6e8bfbca331a2c8681 SHA256: 0ecfd353570223030a15a88ea7616a97cc9f82ef84236a6334d387fc855c541e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Osi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. 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License: unknown Vendor: Institut Pasteur Package: gensoft-pal2nal-14.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 66 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-pal2nal-14.1_1.0_amd64.deb Size: 13492 MD5sum: dd1ffb842a3f87bc60a6a205dfa30abc SHA1: b8050893882a897a53fc00409e9706b1e838a5fa SHA256: a97bee4d7079cb529897991afef07798cb3cfc466aef48e383eee0cb9d7e7dff Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: converts a multiple sequence alignment of proteins and the corresponding DNA (or mRNA) sequences into a codon alignment License: unknown Vendor: Institut Pasteur Package: gensoft-paml-4.9j Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4020 Depends: libc6 Filename: pool/main/gensoft-paml-4.9j_1.0_amd64.deb Size: 2705820 MD5sum: e273c90568fef1f7c982495538a522e8 SHA1: 649ed59f28965590f5f2e83bc3219b2fcb4b0a50 SHA256: bf0ac3fe91c2f8157e90011281eb49efc8a64b48d162b5023eaf0d3c902bdeb6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood License: unknown Vendor: Institut Pasteur Package: gensoft-panacota-1.3.1 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 298074 Depends: gensoft-mash-2.2, gensoft-gcc-9.2.0, libc6, gensoft-blast+-2.10.1, gensoft-hmmer-3.3, gensoft-mafft-7.467, gensoft-quicktree-2.5, gensoft-prodigal-2.6.3.pp1, gensoft-fastme-2.1.6.1, gensoft-iq-tree-1.6.12, gensoft-iq-tree-2.0.6, gensoft-prokka-1.14.5, gensoft-barrnap-0.9, gensoft-fasttree-2.1.11, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-panacota-1.3.1_3.0_amd64.deb Size: 94257780 MD5sum: 66f78511bcd54d7d354b41746d3aea92 SHA1: ff9dca4f400d7a420f10f917f435978e4f8a36d8 SHA256: 86a5d9b50cf6f7d83a959b765f2d21641ada8d441b24bb14ccd706444f02b261 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: PanACoTA (PANgenome with Annotations, COre identification, Tree and corresponding Alignments) is a software providing tools for large scale bacterial comparative genomics. 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License: unknown Vendor: Institut Pasteur Package: gensoft-panaroo-1.2.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 553299 Depends: gensoft-adm-python-3.8.1, gensoft-clustalw-2.1, gensoft-mash-2.2, gensoft-tbb-2020.1, gensoft-prank-170427, gensoft-prokka-1.14.5, gensoft-cd-hit-4.8.1, gensoft-mafft-7.467 Filename: pool/main/gensoft-panaroo-1.2.3_1.0_amd64.deb Size: 163630636 MD5sum: ceba05ee8d09dcc1599ee0c8a4e6adf2 SHA1: 92fd0e667bf0670fe971076ed7ae24b0187e3084 SHA256: ee8985bcd2d139c4e494c8ef1eab5c0db28b69d274b89bb6bc6f5eeb00e9da5b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: An updated pipeline for pangenome investigation License: unknown Vendor: Institut Pasteur Package: gensoft-panaroo-1.3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 587301 Depends: libc6, gensoft-tbb-2020.1, libstdc++6, libgcc-s1, gensoft-prokka-1.14.5, gensoft-mafft-7.467, gensoft-cd-hit-4.8.1, zlib1g, gensoft-mash-2.2, gensoft-prank-170427, gensoft-clustalw-2.1, gensoft-adm-python-3.8.1, libgomp1 Filename: pool/main/gensoft-panaroo-1.3.0_1.0_amd64.deb Size: 172163358 MD5sum: ef2acf0e2501510a2ff8ad1ed4fa4651 SHA1: 6d718a7ae4abb2c80189b02731574445f48e6372 SHA256: 723e39d8071f2e387b4a353dbcc31fe741c838aff00ac8064b9b388f5c1428bf Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: An updated pipeline for pangenome investigation License: unknown Vendor: Institut Pasteur Package: gensoft-panaroo-1.3.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 653596 Depends: gensoft-mafft-7.505, gensoft-adm-python-3.8.1, gensoft-prank-170427, libgomp1, libstdc++6, gensoft-mash-2.3, gensoft-cd-hit-4.8.1, gensoft-clustalw-2.1, libgcc-s1, zlib1g, gensoft-prokka-1.14.5, libc6, gensoft-tbb-2020.1 Filename: pool/main/gensoft-panaroo-1.3.4_2.0_amd64.deb Size: 190569346 MD5sum: 823f8571be012d8cb80da5e26aed7e47 SHA1: 88fbfee1d47a1b6c11eb419b0ffdf78471e3c599 SHA256: 0cc1fe49ee9c50861d799119e634076e6c4fdf94108db87b07c324f7b4084308 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: An updated pipeline for pangenome investigation License: unknown Vendor: Institut Pasteur Package: gensoft-panaroo-1.5.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 656027 Depends: gensoft-mafft-7.505, gensoft-tbb-2020.1, gensoft-clustalw-2.1, libgomp1, gensoft-adm-python-3.8.1, zlib1g, gensoft-prank-170427, libstdc++6, libgcc-s1, gensoft-cd-hit-4.8.1, gensoft-prokka-1.14.5, libc6, gensoft-mash-2.3 Filename: pool/main/gensoft-panaroo-1.5.0_1.0_amd64.deb Size: 191504996 MD5sum: 29ddc982eed0346b4ee9f2120bf261d7 SHA1: 3a345fee613d70fa55c2a0ebf1a71c134877e954 SHA256: f3aa3b3192bc0392387643fb3865aae3e02162c9af0168013140cf00f8b67181 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: An updated pipeline for pangenome investigation License: unknown Vendor: Institut Pasteur Package: gensoft-pandoc-2.10.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 114006 Filename: pool/main/gensoft-pandoc-2.10.1_1.0_amd64.deb Size: 24904406 MD5sum: b384f61ec33cc9fc92f3bfc15ba15712 SHA1: ed60784791686b1eb0a9766d7c58ad9972cca04e SHA256: 7e23d67e534c2173c46fa0e79069ffe028f43b0471e0488171f0cf325fb1f26e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: If you need to convert files from one markup format into another, pandoc is your swiss-army knife. 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License: unknown Vendor: Institut Pasteur Package: gensoft-pandora-0.9.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 21224 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-pandora-0.9.2_1.0_amd64.deb Size: 6453912 MD5sum: 8ec3a39865c4551fe86415f2c565e68c SHA1: 3567a83bfa2c82c5a1fed4e986df89f632085344 SHA256: c4716964c8dd97fc605694e437988d0d5feb9b4490685652b18d8c6e34cbb41d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Pan-genome inference and genotyping with long noisy or short accurate reads License: unknown Vendor: Institut Pasteur Package: gensoft-pango-1.42.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4936 Depends: gensoft-expat-2.2.9, gensoft-pixman-0.38.4, gensoft-fontconfig-2.13.91, libfribidi-dev, zlib1g, gensoft-libffi-3.3, gensoft-xorg-libs-1.1, gensoft-help2man-1.47.12, libc6, gensoft-glib-2.58.3, libfribidi0, gensoft-harfbuzz-2.6.4, gensoft-cairo-1.16.0, libbz2-1.0, gensoft-libpng-1.6.37 Filename: pool/main/gensoft-pango-1.42.4_1.0_amd64.deb Size: 1265866 MD5sum: c48ebe31204bf76bb25cdf88c2debc11 SHA1: 81f91c8eba42cc03e93ae40637ea9dc081aee0ff SHA256: 7464bda239b95c834523a645e801896be33c9c48b7d90cdd9c54509a14d5c551 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Pango is a library for laying out and rendering of text, with an emphasis on internationalization. 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License: unknown Vendor: Institut Pasteur Package: gensoft-panicmage-1.3.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 433 Depends: libc6, gensoft-gmp-6.2.0, gensoft-gcc-9.2.0, gensoft-cln-1.3.6, gensoft-gsl-2.6 Filename: pool/main/gensoft-panicmage-1.3.0_1.0_amd64.deb Size: 348074 MD5sum: 553f3e73cedb83789eeb8356ffac2567 SHA1: 2f14d2e1a3dcd5f8f583a19e83f9adee6715af47 SHA256: f956da6db3fc34723967c5d3af6f018c78f4f9b4c4d8724eec6bfc97df01afc1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Panicmage is a shortcut for pangenome analyzer for infinitely - which means considerably - many genes. panicmage estimates the parameters of the infinitely many genes model for given datasets and performs statistical tests on neutral genome evolution and sampling bias. License: unknown Vendor: Institut Pasteur Package: gensoft-panseq-3.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 19327 Depends: gensoft-adm-perl-5.30.1, gensoft-xz-5.2.4, zlib1g, gensoft-expat-2.2.9, gensoft-cd-hit-4.8.1, gensoft-mummer-3.23, gensoft-libiconv-1.16, gensoft-blast+-2.10.0, libc6, gensoft-muscle-3.8.1551, gensoft-libxml2-2.9.10 Filename: pool/main/gensoft-panseq-3.2.1_1.0_amd64.deb Size: 5111668 MD5sum: e056b381ee6a5ed4a77dff56d78e3b09 SHA1: 71100d5bd6683307b18e709403f88a704c4a45b1 SHA256: 31324f0650ebacc0c6731f9305c4c4a2d2307930b6a233ccfd5fa638199e67de Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: determines the core and accessory regions among a collection of genomic sequences based on user-defined parameters. It readily extracts regions unique to a genome or group of genomes, identifies SNPs within shared core genomic regions, constructs files for use in phylogeny programs based on both the presence/absence of accessory regions and SNPs within core regions. License: unknown Vendor: Institut Pasteur Package: gensoft-papi-5.7.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 544380 Depends: libc6 Filename: pool/main/gensoft-papi-5.7.0_1.0_amd64.deb Size: 360166242 MD5sum: 41686fa6a7bd06daca460c426d344dee SHA1: 829046ef2c8d076c687c4deaaf00d14ca30f75bf SHA256: 1736852242aba6aab7ea465df6d64c4bfd0fc15732e72fb43d52949cae8a333e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Performance Application Programming Interface License: unknown Vendor: Institut Pasteur Package: gensoft-parabricks-4.0.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1880980 Depends: gensoft-apptainer-1.2.5 Filename: pool/main/gensoft-parabricks-4.0.1_2.0_amd64.deb Size: 1920827776 MD5sum: 8aa5dc5372e77214f10579cc9908ef91 SHA1: ff942b4516ef6d7998de66246b12bdf3d89730e3 SHA256: d458aa08f5fc45adce3f47da2a650c425603b4e3d37a3c48376b25aa1890866e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Nvidia Clara Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications License: unknown Vendor: Institut Pasteur Package: gensoft-parabricks-4.1.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2692678 Depends: gensoft-apptainer-1.2.5 Filename: pool/main/gensoft-parabricks-4.1.1_2.0_amd64.deb Size: 2751808050 MD5sum: 4b97c4f96659602a69b7a8387ff1d7e7 SHA1: 1f7db57c705fa1cc13807c120959a06b235651da SHA256: e596a8953b9ba92b34f9e5dabdbe10651f1a0b5d8e5fd9ae1bcdc35e4791917a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Nvidia Clara Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications License: unknown Vendor: Institut Pasteur Package: gensoft-paradiseo-3.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 30973 Filename: pool/main/gensoft-paradiseo-3.0.0_1.0_amd64.deb Size: 4281926 MD5sum: 616be6a5a0f5fbf0d911b892e7d89bf1 SHA1: 2f06b940411f711d2a5f49392b4d58ba2bd3e9f3 SHA256: e554fb1f4d9647032ac98e628e29e2694bde01854da51d827e963c08e05071dd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: An evolutionary computation framework to (automatically) build fast parallel stochastic optimization solvers License: unknown Vendor: Institut Pasteur Package: gensoft-parallel-20200222 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2992 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-parallel-20200222_1.0_amd64.deb Size: 1651354 MD5sum: 321a5feb940fcead3a302f35c4b956c4 SHA1: b2ed4adb7fc174255ebcff7e6d5ac7b52023de09 SHA256: c933bbb6072ed7e93b34966844161809a4725f0b07e78ce9366966e7a6a9b354 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: GNU parallel is a shell tool for executing jobs in parallel using one or more computers License: unknown Vendor: Institut Pasteur Package: gensoft-parasail-2.4.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 155217 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-parasail-2.4.1_1.0_amd64.deb Size: 35262128 MD5sum: b165b8f8e48faa31cdcef44eac9b77d7 SHA1: 7546af10dd4e4d1007029fad169be570359035c1 SHA256: 110fd95e512de442834005813642afecb8278a5c6d1b1b00a1cf7d9b629c8b86 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Pairwise Sequence Alignment Library. parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and various semi-global pairwise sequence alignment algorithms. License: unknown Vendor: Institut Pasteur Package: gensoft-parasail-2.6.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 174082 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-parasail-2.6.2_1.0_amd64.deb Size: 38669940 MD5sum: c38a1c3dd1b3f8415a6009be8d488c35 SHA1: d5ff25fa420be9ee6a5955f37ca9da45798f7c8e SHA256: ebec10f534f80e2cab8e221eb48af62ae608cab7d7b5c9e8a9eb8d498e90a335 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Pairwise Sequence Alignment Library. parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and various semi-global pairwise sequence alignment algorithms. License: unknown Vendor: Institut Pasteur Package: gensoft-paratype-1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 98709 Depends: gensoft-bowtie2-2.3.5.1, gensoft-samtools-1.13, gensoft-adm-python-3.8.1, gensoft-bwa-0.7.17, libc6 Filename: pool/main/gensoft-paratype-1.1_1.0_amd64.deb Size: 28575260 MD5sum: ed135588710212a6def327208c88f7a1 SHA1: d4a31804600a40c8cba805b822178ba5e111558c SHA256: a4c40074a24c2bcead971e0ac3337d56fc669a36b9b24e3db5e180e2e5743e3e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Assigns genotypes to Salmonella Paratyphi A isolates using whole-genome sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-pari-2.9.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 15174 Depends: gensoft-adm-perl-5.30.1, libtinfo5, libc6, libreadline8, gensoft-gmp-6.2.0 Filename: pool/main/gensoft-pari-2.9.5_1.0_amd64.deb Size: 5840542 MD5sum: 8e006681204ce6e44ecd95d762444ea6 SHA1: 992f69e20db50aaaf3c520c27a9e11e0478f3757 SHA256: 7b554564b2634498a35a89b60ef700f2a27290bcf6c9174dc98da57177384f78 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PARI/GP is a widely used computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...), but also contains a large number of other useful functions to compute with mathematical entities such as matrices, polynomials, power series, algebraic numbers etc., and a lot of transcendental functions. PARI is also available as a C library to allow for faster computations. License: unknown Vendor: Institut Pasteur Package: gensoft-parsimonator-1.0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 123 Depends: libc6 Filename: pool/main/gensoft-parsimonator-1.0.2_1.0_amd64.deb Size: 59490 MD5sum: 44afe9879c18c7d583e5b5a0e8935eb1 SHA1: 5cbc29dcc8dc2fc1a13f04e3c2186ce58fac5409 SHA256: de57f0eb2fad32340a30e97badfdcac2b256278efe548a475f3b633dcc093ffa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Parsimonator is a no-frills light-weight implementation for building starting trees under parsimony for RAxML-Light. It deploys a randomized stepwise addition order algorithm to build trees and thereafter conducts a couple of SPR (Subtree Pruning Re-Grafting moves) to further improve the parsimony score. License: unknown Vendor: Institut Pasteur Package: gensoft-parsnp-1.2.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 7984 Depends: gensoft-gcc-9.2.0, libc6, gensoft-libmuscle-1.0.0 Filename: pool/main/gensoft-parsnp-1.2.1_2.0_amd64.deb Size: 1744302 MD5sum: 7d2e22110082676ed6e0d3b01d09087a SHA1: a735012dfab50ce9ef2b8abee0689ee3cd6cf555 SHA256: 17c8a76ccf5e6085c7f8d0a35a081f7d0b4380a2dae09a908119f221aaf35647 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. License: unknown Vendor: Institut Pasteur Package: gensoft-parsnp-1.5.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 85269 Depends: gensoft-fasttree-2.1.11, gensoft-phipack-1.0, gensoft-harvest-tools-1.3, gensoft-gcc-9.2.0, gensoft-adm-python-3.8.1, gensoft-raxml-8.2.12, libc6, gensoft-libmuscle-1.0.0 Filename: pool/main/gensoft-parsnp-1.5.4_2.0_amd64.deb Size: 24687542 MD5sum: c9d6ca826f6b29d2c6552d5142b72d9b SHA1: 540922de693cee59ecd667e2d1962571209529d6 SHA256: 275dab197c0ac30f26a83d7d817ad14959a681a7431701949afb4e6d70cb39dc Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. License: unknown Vendor: Institut Pasteur Package: gensoft-parsnp-1.5.6 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 85269 Depends: gensoft-raxml-8.2.12, gensoft-phipack-1.0, gensoft-fasttree-2.1.11, libc6, gensoft-gcc-9.2.0, gensoft-libmuscle-1.0.0, gensoft-harvest-tools-1.3, zlib1g, libgcc-s1, gensoft-adm-python-3.8.1, which, libcrypt1 Filename: pool/main/gensoft-parsnp-1.5.6_2.0_amd64.deb Size: 24686702 MD5sum: 396f7c6b9b834ab10073f13d9e1dc86d SHA1: 19737146d04c6373b14a7e6b1c05f37605b8dc02 SHA256: aa60c971cae936c02f209da419ea97b1ebc2b955f1cf9b6145dd5d2af79fa6d1 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. License: unknown Vendor: Institut Pasteur Package: gensoft-parsnp-1.6.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 85270 Depends: gensoft-fasttree-2.1.11, libc6, which, zlib1g, gensoft-libmuscle-1.0.0, gensoft-adm-python-3.8.1, gensoft-harvest-tools-1.3, libgcc-s1, gensoft-phipack-1.0, gensoft-raxml-8.2.12, libcrypt1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-parsnp-1.6.2_2.0_amd64.deb Size: 24688902 MD5sum: b85763641ee999c7e64b2e6bba68dfb2 SHA1: 383939d0736b09e95c21b94dcb42d37c015cc7a7 SHA256: cb15092482db4524d7d569fb5bd89b971124b4263588d5d3f1da3293e921a406 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. License: unknown Vendor: Institut Pasteur Package: gensoft-parsnp-2.0.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 108358 Depends: zlib1g, gensoft-harvest-tools-1.3, gensoft-raxml-8.2.12, gensoft-gcc-9.2.0, gensoft-fasttree-2.1.11, libgcc-s1, which, gensoft-libmuscle-1.0.0, gensoft-mash-2.3, libcrypt1, gensoft-fastani-1.33, libc6, gensoft-phipack-1.0, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-parsnp-2.0.6_1.0_amd64.deb Size: 30811988 MD5sum: 951b90ef5a4ead9dfbb09845df8a4d60 SHA1: ca6aba5f90d02319f30d8721e1f8214fd07b774d SHA256: 29508dbf626f3927ba81d277d6dc015572af60111b7cfb23e6529cd3384d3aa4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. License: unknown Vendor: Institut Pasteur Package: gensoft-pastml-1.9.34 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 303952 Depends: libgcc-s1, gensoft-adm-python-3.8.1, libstdc++6, zlib1g, libc6 Filename: pool/main/gensoft-pastml-1.9.34_1.0_amd64.deb Size: 96012578 MD5sum: 95e69065a2a3aaf655d2b3856b2bddbb SHA1: 2f8083b3eed7a7b0a6f4c40f81c93a0e730d51c3 SHA256: 9b4f28c96665cfa6df9bb2ff304dfea015fd5a76fe42379ec5d0fb39d5eb47b1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: provides fast methods for Ancestral Character Reconstruction (ACR) and visualisation on rooted phylogenetic trees. Given a rooted tree and its node annotations, it can either visualise them as-is, or infer ancestral node states based on the tip states, with a selection of maximum likelihood and parsimonious methods. The result is then visualised as a zoomable html map. License: unknown Vendor: Institut Pasteur Package: gensoft-pastml-1.9.41 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 283459 Depends: libstdc++6, libc6, libgcc-s1, zlib1g, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-pastml-1.9.41_1.0_amd64.deb Size: 88698892 MD5sum: a71dee6eb85866127aad2bd83662fd6f SHA1: 34febfabe752e49ff2b31de8fa77696997f23a2e SHA256: 315ea2bd006c2a0bfb749c84115383e5d60a4135ecb93fe5596717e064811303 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: provides fast methods for Ancestral Character Reconstruction (ACR) and visualisation on rooted phylogenetic trees. Given a rooted tree and its node annotations, it can either visualise them as-is, or infer ancestral node states based on the tip states, with a selection of maximum likelihood and parsimonious methods. The result is then visualised as a zoomable html map. License: unknown Vendor: Institut Pasteur Package: gensoft-pastml-1.9.46 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 315703 Depends: libgcc-s1, libstdc++6, libc6, zlib1g, gensoft-adm-python-3.10.7 Filename: pool/main/gensoft-pastml-1.9.46_1.0_amd64.deb Size: 98525084 MD5sum: 66ffc33b19fd4c9d9a340bbda759913f SHA1: 0832b730cc0e6a24a77467515bc78cdfb2e1b13f SHA256: 5ae31d86f151f0be2bd15e215644bd004c12ca5f3976e3494d10401f80e2aa4c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: provides fast methods for Ancestral Character Reconstruction (ACR) and visualisation on rooted phylogenetic trees. Given a rooted tree and its node annotations, it can either visualise them as-is, or infer ancestral node states based on the tip states, with a selection of maximum likelihood and parsimonious methods. The result is then visualised as a zoomable html map. License: unknown Vendor: Institut Pasteur Package: gensoft-pastml-1.9.50 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 314681 Depends: libstdc++6, libc6, libgcc-s1, gensoft-adm-python-3.10.7, zlib1g Filename: pool/main/gensoft-pastml-1.9.50_1.0_amd64.deb Size: 98398142 MD5sum: 8cc65ec893393776fc97fdb10cf7fc0a SHA1: b42fca404155ee8144b374d67188e6898851c7f4 SHA256: cfe360be17c84cbd10cc2f10b484ff7c15f51915d15ab74bfb03b321e6faf894 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: provides fast methods for Ancestral Character Reconstruction (ACR) and visualisation on rooted phylogenetic trees. Given a rooted tree and its node annotations, it can either visualise them as-is, or infer ancestral node states based on the tip states, with a selection of maximum likelihood and parsimonious methods. The result is then visualised as a zoomable html map. License: unknown Vendor: Institut Pasteur Package: gensoft-pastml-1.9.51 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 314681 Depends: libstdc++6, libgcc-s1, gensoft-adm-python-3.10.7, zlib1g, libc6 Filename: pool/main/gensoft-pastml-1.9.51_1.0_amd64.deb Size: 98395616 MD5sum: 19e1a8c88aa1cf305a7735985941ca7c SHA1: 63258b6922ebbcea2f25c1a176d228900b7d6495 SHA256: af6efc2daa582fe7be1e8c88595d2eb12b7cf46e106de753acabe996c0509eeb Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: provides fast methods for Ancestral Character Reconstruction (ACR) and visualisation on rooted phylogenetic trees. Given a rooted tree and its node annotations, it can either visualise them as-is, or infer ancestral node states based on the tip states, with a selection of maximum likelihood and parsimonious methods. The result is then visualised as a zoomable html map. License: unknown Vendor: Institut Pasteur Package: gensoft-patchelf-0.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2765 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-patchelf-0.10_1.0_amd64.deb Size: 693490 MD5sum: 74b82bac180971120c3ac1e07b023c3e SHA1: 32d9532cc10472600d50a786c5a5434a0f0db8f3 SHA256: 7de02f407a37a69e5d405525b8dcb9be005094074e3e19a2c755123d299b01e9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables. License: unknown Vendor: Institut Pasteur Package: gensoft-pbalign-0.3.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 150362 Depends: gensoft-curl-7.68.0, zlib1g, libc6, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17, gensoft-samtools-1.13, libbz2-1.0, libssl1.1, gensoft-pbbam-1.0.7, gensoft-blasr-5.3.3, gensoft-xz-5.2.4 Filename: pool/main/gensoft-pbalign-0.3.2_1.0_amd64.deb Size: 48009228 MD5sum: ae6379cc4efe9eb11822060cb984c014 SHA1: 5679fa27ef8ba4b58e9d2dc363952016ea952f19 SHA256: a58f46753fe1d8d7fae32075e717added9ba6d3a40c433591be1a0ef4149829a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This tool gets a CRISPR profile by identifying the presence of known spacers and direct repeats (DRs) in a given sequence based on a catalogue. License: unknown Vendor: Institut Pasteur Package: gensoft-pbccs-6.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6937 Depends: libc6 Filename: pool/main/gensoft-pbccs-6.0.0_1.0_amd64.deb Size: 3268042 MD5sum: 6d3723a4753c914f6d6c6b9b3420a6cd SHA1: ff4bbc48218550d56d8fb081597f58eec46fad73 SHA256: 0178e9246dc1270bf7032f353479a4b1a40441c06ca7286fe5d8931652516593 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ccs combines multiple subreads of the same SMRTbell molecule using a statistical model to produce one highly accurate consensus sequence, also called a HiFi read, along with base quality values. This tool powers the Circular Consensus Sequencing workflow in SMRT Link. License: unknown Vendor: Institut Pasteur Package: gensoft-pbcopper-1.6.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4836 Depends: gensoft-gcc-9.2.0, gensoft-boost-1.72.0 Filename: pool/main/gensoft-pbcopper-1.6.0_1.0_amd64.deb Size: 1336940 MD5sum: e3ced195805af0a497e003241758b1ba SHA1: 9be4d0018f53629ed916ebfe89c14a64c99f9be2 SHA256: a0fcf232bd1743d4931d5ec096b447e4ee2ee7c29f3e941f5019169206377a0f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The pbcopper library provides a suite of data structures, algorithms, and utilities for PacBio C++ applications License: unknown Vendor: Institut Pasteur Package: gensoft-pbh5tools-2.3.0p4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 146925 Depends: libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-pbh5tools-2.3.0p4_1.0_amd64.deb Size: 47381554 MD5sum: cd6c9f0c19b371c37cbda9721ec53f59 SHA1: 09794764a9bfd5fae210ae4f3022c29498c33176 SHA256: 30e8d5a2813f72886aa72d886f4a36ab4038363f5f3bcef02f4937fb6a0342d3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: pbh5tools is a collection of tools that can manipulate the content or extract data from h5 files, that contain alignment information (cmp.h5) and files that contain base-call information (bas.h5 and pls.h5) License: unknown Vendor: Institut Pasteur Package: gensoft-pbipa-1.8.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 463129 Depends: gensoft-apptainer-1.0.0 Filename: pool/main/gensoft-pbipa-1.8.0_1.0_amd64.deb Size: 471791080 MD5sum: 128e2f6171ee9b797d62416d416486ec SHA1: 5a5909649c16f4e674b3f6e45cc3301c76696eaf SHA256: 374325921396952cc5c4bfb020d6522b1ed0e06811e0827a0df37d1815f885cb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBio HiFi reads to produce high-quality phased genome assemblies. IPA is an end-to-end solution, starting with input reads and resulting in a polished assembly. IPA is fast, providing an easy to use local run mode or a distributed pipeline for a cluster. License: unknown Vendor: Institut Pasteur Package: gensoft-pbmm2-1.7.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7790 Depends: libc6, gensoft-gcc-9.2.0, zlin1g Filename: pool/main/gensoft-pbmm2-1.7.0_1.0_amd64.deb Size: 2909668 MD5sum: 3947e2d023847c05df30491eafe7e398 SHA1: ba4d446b6ac94ff8cfde3af58a7901c8c1768063 SHA256: 6d701a731212455e715c70a8a9ef0a8bc112e23f22b07a89e3498fef132a4292 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A minimap2 frontend for PacBio native data formats License: unknown Vendor: Institut Pasteur Package: gensoft-pbsuite-15.8.24 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 149332 Depends: mawk, gensoft-adm-python-2.7.17, libc6, gensoft-blasr-5.3.3, gensoft-samtools-0.1.19 Filename: pool/main/gensoft-pbsuite-15.8.24_1.0_amd64.deb Size: 42496016 MD5sum: 27d1318f2369a88c66740c2295a52237 SHA1: 20753bb121a01ef43b869ccec5ef82a7aa54f38a SHA256: 76fa6947b2dee4e52bb0c05d4da77b6c0047493933d0b7f43df1c40ab1b615f5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. License: unknown Vendor: Institut Pasteur Package: gensoft-pbwt-3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 755 Depends: gensoft-curl-7.68.0, zlib1g, gensoft-xz-5.2.5, libc6, libbz2-1.0, gensoft-htslib-1.18, libssl1.1 Filename: pool/main/gensoft-pbwt-3.0_1.0_amd64.deb Size: 286206 MD5sum: e14ceefd086cf4ad2eefdfccb43c3b42 SHA1: 867645b27cdb656f8c0c72d92a90bead9d4e34fc SHA256: fd1e8b0ec84fa64193143fc0df1ed22d72bebe57d535a4bc08d585ae619a2454 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: pbwt package provides a core implementation and development environment for PBWT (Positional Burrows-Wheeler Transform) methods for storing and computing on genome variation data sets. License: unknown Vendor: Institut Pasteur Package: gensoft-pbzip2-1.1.13 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 250 Depends: libc6, gensoft-gcc-9.2.0, libbz2-1.0 Filename: pool/main/gensoft-pbzip2-1.1.13_1.0_amd64.deb Size: 107386 MD5sum: 2a4eb845f9a4697c168fbdb9469a4a6c SHA1: 9e010ec5eb10ef2b80466682cdec3d7f239f2f7f SHA256: c12078fccd09f60f7e0f1499cd3df837fe87d5a8895c2bb63376efed54971810 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PBZIP2 is a parallel implementation of the bzip2 block-sorting file compressor that uses pthreads and achieves near-linear speedup on SMP machines. The output of this version is fully compatible with bzip2 v1.0.2 or newer. License: unknown Vendor: Institut Pasteur Package: gensoft-pcma-2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 361 Depends: libc6 Filename: pool/main/gensoft-pcma-2.0_1.0_amd64.deb Size: 169740 MD5sum: d84b5cae1c4549796430a760762884a4 SHA1: 7bb4e470e8f5948d092af0aae24272627093abb7 SHA256: afc1dbe924561d7d6e9b0fb0253443e677b195c8053bfdfad6166c19800e0752 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Profile Consistency Multiple sequence Alignment) is a progressive multiple sequence alignment program that combines two different alignment strategies License: unknown Vendor: Institut Pasteur Package: gensoft-pcre-8.43 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5531 Depends: libbz2-1.0, libtinfo5, libc6, libreadline8, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-pcre-8.43_1.0_amd64.deb Size: 1753300 MD5sum: af1479d686c6c6aa75ae3e5c2bd08d7f SHA1: abbcfa2f314e5ec0a9f7b36611d32db5b9ae9a2a SHA256: 85a20b943ca06ec233ea7d20404d19b62814e50c4a9a7b3abd49b3ac06922c09 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. License: unknown Vendor: Institut Pasteur Package: gensoft-pcre2-10.34 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4749 Depends: zlib1g, libbz2-1.0, libtinfo5, libc6, libreadline8 Filename: pool/main/gensoft-pcre2-10.34_1.0_amd64.deb Size: 1473832 MD5sum: 9a397a1c378d5992d2c2ff7ba604fad5 SHA1: 5af59dfc958bbeca750f7bdb16e9ce8795586bf4 SHA256: 96d035305a195b612f42b077054e80881ab348b355a3935cab28e46064fbb9b1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. License: unknown Vendor: Institut Pasteur Package: gensoft-pdb-lib-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 128 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-pdb-lib-1.0_1.0_amd64.deb Size: 33562 MD5sum: c0d6c0059b490cc43119e8165c97efa3 SHA1: c810cdd0f3e797042a7f431ac2c201014768a623 SHA256: cafe89adc1396fa8eff316d05676ce50606bb29dd9c97acaaa0aa286340e9299 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Protein structure analysis from PDB files License: unknown Vendor: Institut Pasteur Package: gensoft-pdb-tools-2.4.8 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 9934 Depends: gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-pdb-tools-2.4.8_1.0_amd64.deb Size: 2750574 MD5sum: c0b409d35201dc47e92881e200f820b5 SHA1: c2b1912f7691938c2cb06204c1149ada10bb02b9 SHA256: ca0ff2b48819607c12c3ab03cb993bc7a9d1b0e348e7dee09b7dbe4c4261528a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A swiss army knife for manipulating and editing PDB files License: unknown Vendor: Institut Pasteur Package: gensoft-peakseq-1.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 178 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-peakseq-1.3.1_1.0_amd64.deb Size: 73414 MD5sum: 3f3c3e49ed5f072f8f21a23cc7db1820 SHA1: 59850d7ef9e26f0e81a636a3e63a3eade337bad3 SHA256: ae22990bc507ba66b70c2a138bb0e636a54bbbb878681c9694e50b32127c59eb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program for identifying and ranking peak regions in ChIP-Seq experiments License: unknown Vendor: Institut Pasteur Package: gensoft-pear-0.9.10 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 718 Filename: pool/main/gensoft-pear-0.9.10_2.0_amd64.deb Size: 77806 MD5sum: 801e6f207a65af0951647902c585bdd8 SHA1: 7a981f282393521063a6b85886d3d155e0148029 SHA256: dce8afcdfe2daaaf313b9a3d3e9b404685efabf49cebbe1d365971b1cfaee94a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Paired-End reAd mergeR. PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory License: unknown Vendor: Institut Pasteur Package: gensoft-pear-0.9.11 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 726 Filename: pool/main/gensoft-pear-0.9.11_2.0_amd64.deb Size: 80026 MD5sum: 1aab5e50b25219cfd935108b55d9fd65 SHA1: d7efeca1fa16df816b0665dd4b5875ad0b10c50b SHA256: a849cedf318a9c6e59bdd22a4ebe5343582d6d14d5fd50c03f44cf4a135fe620 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Paired-End reAd mergeR. PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory License: unknown Vendor: Institut Pasteur Package: gensoft-pedstats-0.6.12 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 527 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-pedstats-0.6.12_1.0_amd64.deb Size: 230046 MD5sum: 0b716f943d2a008cb77c7df42b669eb2 SHA1: e4bfb03f2cc66739645fe8e8699d856049fb95b4 SHA256: a0cfda1cebaf9afbe6273ad1f963d8dde4bf9d21339bb382510bb38740dc7be3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A tool for quick validation and summary of any pair of pedigree and data files License: unknown Vendor: Institut Pasteur Package: gensoft-penncnv-2009.08.27 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 121389 Depends: gensoft-ghostscript-9.50, libc6, libdb5.3, gensoft-r-3.6.2, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-penncnv-2009.08.27_1.0_amd64.deb Size: 48405674 MD5sum: f865d6eee9174a308ab1e28978e66d9e SHA1: aec40af4581e95073bc2fbe36ca72095de9a49d8 SHA256: 347399984d8ffe9fe22a8797947fa4cb27cd0443e861d392e16122261846d2d5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: CNV detection from Illumina whole-genome SNP genotyping arrays. It has been extended to handle candidate gene SNP arrays, to handle recent high-density arrays with non-polymorphic markers (so-called CN markers), and to handle Affymetrix genome-wide arrays License: unknown Vendor: Institut Pasteur Package: gensoft-perl-5.30.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 71777 Depends: libc6, gensoft-db-18.1.32, zlib1g Filename: pool/main/gensoft-perl-5.30.1_2.0_amd64.deb Size: 18678700 MD5sum: 569a0bc7bfb17916444b2b89bd60bf79 SHA1: f03a9bf905c1c4585dce6f8e43ee21dd64be4b04 SHA256: 1fe83f520213a91dfd85ed7fa07c8a49cecd95afe70500f06f3918a291c25611 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Perl 5 is a highly capable, feature-rich programming language with over 27 years of development License: unknown Vendor: Institut Pasteur Package: gensoft-perl-5.36.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 76075 Depends: libssl1.1, libcrypt1, gensoft-db-18.1.32, libc6 Filename: pool/main/gensoft-perl-5.36.0_2.0_amd64.deb Size: 19636964 MD5sum: ca706d0dfdc89a04aec9b9458a4844ec SHA1: 5dab1d8024ca91438d3feaa8c315d8f3bef9d040 SHA256: dde53568973a730b998ca7862b63d630d4e5aaf0569a0f214f34214a195bf1d1 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Perl 5 is a highly capable, feature-rich programming language with over 27 years of development License: unknown Vendor: Institut Pasteur Package: gensoft-pf1-tools-0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 92433 Depends: libc6, gensoft-adm-perl-5.30.1, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-pf1-tools-0.1_1.0_amd64.deb Size: 24802122 MD5sum: daebf6aae73bfe8d3555cc223fe78d22 SHA1: 56b7d5cd1122498cf6ce9941de9b666afece287e SHA256: 5adf1aab1e52a76b76a87a936da1e7549677e396120438c5bf53ca52253e39f3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: small scripts used at PF1 License: unknown Vendor: Institut Pasteur Package: gensoft-pftool-1.12-beta Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 3380 Depends: gensoft-adm-python-2.7.17, libc6, gensoft-openmpi-4.0.5, zlib1g, libssl1.1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-pftool-1.12-beta_1.0_amd64.deb Size: 1003086 MD5sum: 5bdf5dce29961d076312ca3a458b46e6 SHA1: 496165c70f254d16ea115889abe0f1ce46217ade SHA256: 58024bb51e5ee72027c53038e3fed3c2a88b02dbe3d00c22cd85e6a8c40fa43f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PFTool (Parallel File Tool) can stat, copy, and compare files in parallel. Its optimized for an HPC workload and uses MPI for message passing. License: unknown Vendor: Institut Pasteur Package: gensoft-pftools-2.3.5 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 940 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-pftools-2.3.5_2.0_amd64.deb Size: 363238 MD5sum: 7828d9f466f8b34748f5ea83677b2f52 SHA1: 2343f3fb1f818cfedbe80437c11e9d0b4fe7a0ac SHA256: 1c6ba84067b5c6392446e8aeb3f0bc90f565275251941c07869ccce571fdc8e4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: The pftools package contains programs for generalized profile applications License: unknown Vendor: Institut Pasteur Package: gensoft-pftools-3.2.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 56904 Depends: libc6, zlib1g, gensoft-pcre-8.43, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-pftools-3.2.5_1.0_amd64.deb Size: 28478438 MD5sum: c98c615fe97a8c89e9fac12b93e0ff4e SHA1: a09ab81d032ae5e01fb8b1300cb923c14bb43c3a SHA256: 874c9b7cc9c34b70c4f7583e239e3f5861e2d2ada8834ca0c747f78d5b0edcc9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The pftools package contains programs for generalized profile applications License: unknown Vendor: Institut Pasteur Package: gensoft-pgap-2021-05-19 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1136940 Depends: gensoft-singularity-3.7.3, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-pgap-2021-05-19_1.0_amd64.deb Size: 1153037630 MD5sum: 8ff53026cc0fa18d9a7be47fe9cd7f51 SHA1: bc4017f46a8ca6094d5ecb804c31141c01b4c62a SHA256: fd6a2da9dadc4c6742fe6b4f0de6cc76b417a8f21cb936f09b5ea72bf4fe79fb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). License: unknown Vendor: Institut Pasteur Package: gensoft-pgap-2022-08-11 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1232874 Depends: gensoft-adm-python-3.8.1, gensoft-singularity-3.7.3 Filename: pool/main/gensoft-pgap-2022-08-11_1.0_amd64.deb Size: 1250007958 MD5sum: 21f3da33a8a45f89c3e2d89fc7d2a03f SHA1: c7c926002304ffb0058047c5324847c4c14f4e46 SHA256: 17df15a6a02f268cc28c7c559290665cad153e9e8b1d10fdab27a8018bae6b7f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). License: unknown Vendor: Institut Pasteur Package: gensoft-pgap-2022-10-03 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1634419 Depends: gensoft-adm-python-3.8.1, gensoft-singularity-3.7.3 Filename: pool/main/gensoft-pgap-2022-10-03_1.0_amd64.deb Size: 1657805532 MD5sum: 524aa3460d484f5f2609aeafc37dd7c3 SHA1: 2a0240073b2755ebfb7c2d597a654328f673bbbf SHA256: 26a3c70d46257b4e9eeadb577b72872aebf55179fcebfa2292204b4f353347bd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). License: unknown Vendor: Institut Pasteur Package: gensoft-pggb-0.2.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 23 Depends: gensoft-smoothxg-0.6.1, gensoft-vg-1.37.0, gensoft-gfaffix-0.1.2.4, gensoft-seqwish-0.7.3, gensoft-odgi-0.6.3, gensoft-wfmash-0.7.0 Filename: pool/main/gensoft-pggb-0.2.0_2.0_amd64.deb Size: 8550 MD5sum: 956c5c36b778158767439050381b5d75 SHA1: d7d1ae8755fd57de50f759f31df21d1d0faae448 SHA256: 566a20898b27d4584edb521814605ea5a52e034c603f0bea990e25ea796ec937 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: pangenome graph construction pipeline that renders a collection of sequences into a pangenome graph (in the variation graph model). License: unknown Vendor: Institut Pasteur Package: gensoft-pggb-0.3.1 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 26 Depends: gensoft-samtools-1.10, gensoft-smoothxg-0.6.5, gensoft-wfmash-0.9.1, gensoft-seqwish-0.7.6, gensoft-gfaffix-0.1.2.4, bc, gensoft-vg-1.37.0 Filename: pool/main/gensoft-pggb-0.3.1_3.0_amd64.deb Size: 9568 MD5sum: f89b6ddbb44211329e670370576a2830 SHA1: edc70e29a6161c4e9be847987e04e9e574a67273 SHA256: be66aed332728f8875cbbc3658b4d2d1b6122367ee42f84a7a9cb588fb4afc85 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: pangenome graph construction pipeline that renders a collection of sequences into a pangenome graph (in the variation graph model). License: unknown Vendor: Institut Pasteur Package: gensoft-pggb-0.4.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 34 Depends: gensoft-wfmash-0.9.1, gensoft-gfaffix-0.1.2.4, gensoft-samtools-1.10, gensoft-smoothxg-0.6.5, gensoft-seqwish-0.7.6, bc, gensoft-vg-1.37.0, gensoft-odgi-0.7.3 Filename: pool/main/gensoft-pggb-0.4.1_2.0_amd64.deb Size: 11126 MD5sum: 2c18ef4a4ebf597d026a6be6da5bd553 SHA1: f4f9603d32210ec222ae0292bc887d9c6e9b17ff SHA256: c545a257f39b97bff42494bb46ce658b22dae066945c7ec56db260feecd92780 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: pangenome graph construction pipeline that renders a collection of sequences into a pangenome graph (in the variation graph model). License: unknown Vendor: Institut Pasteur Package: gensoft-pggb-0.5.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 36 Depends: gensoft-samtools-1.16, gensoft-seqwish-0.7.6, gensoft-vg-1.37.0, gensoft-odgi-0.7.3, bc, gensoft-smoothxg-0.6.8, gensoft-gfaffix-0.1.2.4, gensoft-wfmash-0.10.2 Filename: pool/main/gensoft-pggb-0.5.3_2.0_amd64.deb Size: 11908 MD5sum: faf3feefce9b3785acdb9ffaf0ba0fb1 SHA1: 8b29fc5234522d81c9d017e08c3c9933394bb0c7 SHA256: 58aa580de2c9a29f404390bdf8fc82d6348eeb4292cc75320fbe20abce3f8040 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: pangenome graph construction pipeline that renders a collection of sequences into a pangenome graph (in the variation graph model). License: unknown Vendor: Institut Pasteur Package: gensoft-pgp-tools-0.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-pgp-tools-0.0.1_1.0_amd64.deb Size: 3908 MD5sum: 34dd1b1a50758081704b6963944a334b SHA1: 79a7e3970b3a249e4c84b79656ebd88660aabee4 SHA256: 09a98ac30aa07764723e9b8bd12701c02c9640893689b6f6d90cc8e812033379 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Manipulation,filter and sort NGS data License: unknown Vendor: Institut Pasteur Package: gensoft-phageterm-1.0.12 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 329077 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-phageterm-1.0.12_2.0_amd64.deb Size: 102247458 MD5sum: ae01685a6ef7bc6dc4349fd4fa4719cb SHA1: 36cd5b405f8ffc2fb772512441f20c82d9b128b3 SHA256: f5656d9575624157d8ee8704b863d7770cb1d1275bdce15c9ae98d743df63efa Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: PHAGE_TERMINI software is a tool to determine phage packaging strategy and other informations using sequencing reads (Illumina TruSeq paired-end). Phage sequencing reads from a fastq file are aligned to the phage reference genome in order to calculate two types of coverage values (Whole genome coverage and the starting position coverage). License: unknown Vendor: Institut Pasteur Package: gensoft-phageterm-4.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 459092 Depends: gensoft-adm-python-3.8.1, zlib1g, libgcc-s1, libc6, libstdc++6 Filename: pool/main/gensoft-phageterm-4.1_2.0_amd64.deb Size: 144899716 MD5sum: 64fefeb84890bf1cf7bbe35e1f167874 SHA1: 42ffb1749c9ebcf61703fda517f48cc895f2e38d SHA256: e504c0ad72ea5daa2e0473338ae2369c11a4bd18f596f31cb7a04cb93de427c2 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: PHAGE_TERMINI software is a tool to determine phage packaging strategy and other informations using sequencing reads (Illumina TruSeq paired-end). Phage sequencing reads from a fastq file are aligned to the phage reference genome in order to calculate two types of coverage values (Whole genome coverage and the starting position coverage). License: unknown Vendor: Institut Pasteur Package: gensoft-phageterm-4.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 484781 Depends: zlib1g, libstdc++6, libc6, gensoft-adm-python-3.9.16, libgcc-s1 Filename: pool/main/gensoft-phageterm-4.3_1.0_amd64.deb Size: 153934210 MD5sum: f83bd94945489f7728ab3182d634d7a6 SHA1: c1eba7f0a3d66b954f0aaa29d29b723f1bdc9ac1 SHA256: 56463623ac59f63be2607d85a3d1b2b1016cab381e58d7ac64f8fa71cea186af Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: PHAGE_TERMINI software is a tool to determine phage packaging strategy and other informations using sequencing reads (Illumina TruSeq paired-end). Phage sequencing reads from a fastq file are aligned to the phage reference genome in order to calculate two types of coverage values (Whole genome coverage and the starting position coverage). License: unknown Vendor: Institut Pasteur Package: gensoft-phammseqs-1.0.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 96320 Depends: libc6, gensoft-adm-python-3.8.1, gensoft-clustal-omega-1.2.4, libgcc-s1, zlib1g, gensoft-mmseqs2-13-45111 Filename: pool/main/gensoft-phammseqs-1.0.3_1.0_amd64.deb Size: 27981484 MD5sum: 6bd81800311a8e90f5b8e80c4e73b5d6 SHA1: 95c09b23beb99330e91e514f33dffaa46b94ad5b SHA256: ec3c203eb718ef1117dfc5410da64640936536b512ae37f920cc36cbc378cf73 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: The PhaMMseqs package facilitates pham assembly using MMseqs2. Default parameters have been carefully tuned for rapid, accurate exploration of the bacteriophage protein sequence space. License: unknown Vendor: Institut Pasteur Package: gensoft-phanotate-1.5.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12359 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-phanotate-1.5.0_2.0_amd64.deb Size: 3905536 MD5sum: b13c3a3b91db5f38a0f73c8d747c7f30 SHA1: f83cb555cb9207fe602508a110ada1974a8a4057 SHA256: 340f6fdb77dc5548348b02832996a2b1927a4521da08582ede7259641c01c684 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: This tool gets a CRISPR profile by identifying the presence of known spacers and direct repeats (DRs) in a given sequence based on a catalogue. License: unknown Vendor: Institut Pasteur Package: gensoft-phantomjs-2.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 66341 Depends: gensoft-fontconfig-2.13.91, gensoft-expat-2.2.9, gensoft-libpng-1.6.37, gensoft-freetype-2.10.1 Filename: pool/main/gensoft-phantomjs-2.1.1_1.0_amd64.deb Size: 26206510 MD5sum: 261141e014c111298e1a63a89b576779 SHA1: a188dcd1f27faff9f46bcf951f6fa3ae3cafc220 SHA256: 9a3f53cc6ba280656043442a9d9ecce43555eb74a8de5e2e1e881712d543d446 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a headless WebKit scriptable with JavaScript License: unknown Vendor: Institut Pasteur Package: gensoft-pharokka-0.1.10 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 569816 Depends: libc6, gensoft-prodigal-2.6.3.pp1, libstdc++6, zlib1g, gensoft-trnascan-se-2.0.9, gensoft-minced-0.4.2, gensoft-adm-python-3.8.1, gensoft-aragorn-1.2.38, gensoft-phanotate-1.5.0, libgcc-s1, gensoft-mmseqs2-13-45111 Filename: pool/main/gensoft-pharokka-0.1.10_3.0_amd64.deb Size: 136159612 MD5sum: 1fb1aa51d9cb66bddcf91d9f0bbc8bcf SHA1: 369cf4e03c38f9fbce56f0dedad3a038367886bd SHA256: 77b8a464d6330148834a05b85a991d7c1e1a5a5649b6682219e5302d32b265ae Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: pharokka is designed for rapid standardised annotation of bacteriophages. 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License: unknown Vendor: Institut Pasteur Package: gensoft-phase-2.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 893 Depends: libc6, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-phase-2.1.1_1.0_amd64.deb Size: 533346 MD5sum: 166e9efa0b84224c3af9225ca78bed44 SHA1: 14398dd3c5fea4f58d2a1955e7b27e1e5cf19477 SHA256: b682423b0668644b718e833918f1f33bd25b1cbc8a4a0da9b3c80501f577ba53 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program implementing the method for reconstructing haplotypes from population data License: unknown Vendor: Institut Pasteur Package: gensoft-phast-1.5 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 28511 Depends: libc6, gensoft-gcc-9.2.0, gensoft-lapack-3.9.0 Filename: pool/main/gensoft-phast-1.5_1.0_amd64.deb Size: 11995660 MD5sum: b97d6a38d2f70dc3ff3fa29486307610 SHA1: c81cad946daaac6d746702079b03b24c7f54c3ac SHA256: 4ef8630192fbf18ab0a394b75574568ea3423ba5539a5b3c3850ef7aefdfa8e9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PHylogenetic Analysis with Space-Time models License: unknown Vendor: Institut Pasteur Package: gensoft-phast-1.6 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 33667 Depends: gensoft-lapack-3.9.0, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-phast-1.6_1.0_amd64.deb Size: 14504674 MD5sum: 88aa97d132b547e828849715eae2cce6 SHA1: e28b18cb36112154a3b919f05c55ac6d082dde26 SHA256: 0d8c1878f5b4a2d3c2b143f734557adfdeaa27f50a5d33a2efb722d8fa2eb551 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PHylogenetic Analysis with Space-Time models License: unknown Vendor: Institut Pasteur Package: gensoft-phigaro-2.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1799083 Depends: libgcc-s1, libstdc++6, gensoft-adm-python-3.8.1, gensoft-prodigal-2.6.3, gensoft-hmmer-3.3, libc6 Filename: pool/main/gensoft-phigaro-2.2.1_1.0_amd64.deb Size: 534977878 MD5sum: b79b5f55e3f75c5d1900281752fbf424 SHA1: d4c6697027c8c97f263bc7a0a959a99ca69a3b4a SHA256: 2c5a5d57dd64cb825f7d0d8b2e2686d99a6302f5c27d4b453ed61fdf7dd323c5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Phigaro is a scalable command-line tool for predictions phages and prophages from nucleid acid sequences (including metagenomes) and is based on phage genes HMMs and a smoothing window algorithm. License: unknown Vendor: Institut Pasteur Package: gensoft-phipack-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 295 Depends: gensoft-gcc-9.2.0 Filename: pool/main/gensoft-phipack-1.0_1.0_amd64.deb Size: 187126 MD5sum: 86234e9ad2bc6b721b230eb4c7a69982 SHA1: e9459971b22cca8e2760bd58d241f0e0f26d3d3d SHA256: 2cd53de71179330408397efcff491df2dd829881dd0ea0ff3108f784d96db51a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Simple, rapid, and statistically efficient test for recombination. License: unknown Vendor: Institut Pasteur Package: gensoft-phispy-4.2.21 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 379684 Depends: gensoft-hmmer-3.4, libgcc-s1, libstdc++6, zlib1g, gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-phispy-4.2.21_1.0_amd64.deb Size: 122893198 MD5sum: dcfac2916a42b29f75d8ecbb686f8dc1 SHA1: 9f5f74ba841f8b8b05c781a229033689de257890 SHA256: fcad118e8738ed3033b24b4a5c4b12c86727becff63e071e8d9cc9aeec753b79 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes. Given an annotated genome it will use several approaches to identify the most likely prophage regions. License: unknown Vendor: Institut Pasteur Package: gensoft-phold-0.1.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5541596 Depends: libstdc++6, gensoft-adm-python-3.8.1, libgcc-s1, zlib1g, libc6, gensoft-foldseek-8-ef4e960 Filename: pool/main/gensoft-phold-0.1.4_1.0_amd64.deb Size: 3021156982 MD5sum: d0126a82f7cac1d8d9936a283fae8bee SHA1: 5f16900c47c19413e688d35676b2b498151b62cf SHA256: 17e5a06f424d6e4480f607d09f2ecab088ab82a394db5c447b729944ab3c21b5 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a sensitive annotation tool for bacteriophage genomes and metagenomes using protein structural homology. License: unknown Vendor: Institut Pasteur Package: gensoft-phold-0.2.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5564766 Depends: libstdc++6, gensoft-adm-python-3.8.1, zlib1g, libgcc-s1, gensoft-foldseek-9-427df8a, libc6 Filename: pool/main/gensoft-phold-0.2.0_1.0_amd64.deb Size: 3034696886 MD5sum: 7ab9105677ac9d921c900fdb36aa0931 SHA1: bf7e42505e141d476143ebd619f60fb782c9a873 SHA256: b8b14a82487c8487e81316a8b0c005479ddd852d98de363d9917e5c5ff57c762 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a sensitive annotation tool for bacteriophage genomes and metagenomes using protein structural homology. License: unknown Vendor: Institut Pasteur Package: gensoft-phrap-1.090518 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1484 Depends: libc6 Filename: pool/main/gensoft-phrap-1.090518_1.0_amd64.deb Size: 715168 MD5sum: 64723ab7b61841f46dd751578964e61d SHA1: 92c42317c21917d27be5e14ef793da4230c52329 SHA256: 2f42ba6dbd458a3817e4136de0cf022123cc19083f4f430c0cf213ede0922f01 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A program for assembling shotgun DNA sequence data License: unknown Vendor: Institut Pasteur Package: gensoft-phred-071220.b Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1320 Depends: libc6 Filename: pool/main/gensoft-phred-071220.b_1.0_amd64.deb Size: 306774 MD5sum: 61bdc422be5f68d78994d28ee5aecdc1 SHA1: d24834af5e950dec8004a8640282c5b1ac265493 SHA256: 1d33af38126c71863fdffdc32c0693038eb87df3688738a32455a918e123e51f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The phred software reads DNA sequencing trace files, calls bases, and assigns a quality value to each called base License: unknown Vendor: Institut Pasteur Package: gensoft-phylip-3.67 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 6137 Depends: gensoft-xorg-libs-1.1, libc6 Filename: pool/main/gensoft-phylip-3.67_1.0_amd64.deb Size: 2678378 MD5sum: 0b2daa422ba139599deeb948779a98a2 SHA1: 5b237267d7850df1e5cc670e46b7d1fb6e49988b SHA256: 60a13ea03a2e2caf88d6391710ea0a5c7ef7276f0532c1181e2aa72516bafcaa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A package of programs for inferring phylogenies License: unknown Vendor: Institut Pasteur Package: gensoft-phylobayes-4.1c Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 30408 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-phylobayes-4.1c_2.0_amd64.deb Size: 13773570 MD5sum: 498c5dc2b07a2ad607e7c5250cfb303b SHA1: d98172032ee5ef39fb7b4fb64d2514b58cde1e84 SHA256: 979d5198a5988097a6a3edb13cab6b762939292d7b5061dbfd1588e968a5b2e0 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic reconstruction using protein alignments License: unknown Vendor: Institut Pasteur Package: gensoft-phylobayes-mpi-1.8b Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 9050 Depends: libc6, gensoft-openmpi-4.0.5, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-phylobayes-mpi-1.8b_2.0_amd64.deb Size: 3068226 MD5sum: 754681e7d042dcf2a72459967fed69e2 SHA1: d1b04908bad9bc9c98a607179cb5ee93dd14f3d8 SHA256: 9b49c9b946155dfe83dc64505ead7d6ebbc84d40aef4129e5f747f18ef5b7948 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic reconstruction using protein alignments License: unknown Vendor: Institut Pasteur Package: gensoft-phylodeep-0.9 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2024739 Depends: libc6, gensoft-cuda-11.8, gensoft-cudnn-11.x-v8.7.0.84, gensoft-adm-python-3.8.1, zlib1g, libgcc-s1, libstdc++6 Filename: pool/main/gensoft-phylodeep-0.9_1.0_amd64.deb Size: 964137396 MD5sum: b0cab07a67ae744d181945864955c09c SHA1: 63214cef05189b3f2b2b1e27f13f6c9dfba9df63 SHA256: 03f7c4602307424281c2290dc73d2efbfabddcc5359a4994c0db888683febfd4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: python library for parameter estimation and model selection from phylogenetic trees, based on deep learning. License: unknown Vendor: Institut Pasteur Package: gensoft-phyloflash-3.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 7487 Depends: gensoft-bbmap-38.79, gensoft-gcc-9.2.0, gensoft-adm-perl-5.30.1, gensoft-bedtools-2.29.2, gensoft-r-3.6.2, gensoft-mafft-7.467, gensoft-emirge-0.61.1, gensoft-sortmerna-2.1b, gensoft-vsearch-2.14.2, grep, gensoft-hmmer-3.3, gawk, gensoft-spades-3.14.1, libc6 Filename: pool/main/gensoft-phyloflash-3.4_2.0_amd64.deb Size: 1513160 MD5sum: 781313d997119a6cd771cd13fad9e235 SHA1: 9e4ff572c69c48d0e5d4e85f637da16beab473b7 SHA256: 57ce8352180d24787f31a352bca8c10f44497c592b5414a6b835ac3faadae7fb Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset. License: unknown Vendor: Institut Pasteur Package: gensoft-phylophlan-3.0.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 232148 Depends: gensoft-muscle-3.8.1551, gensoft-raxml-8.2.12, gensoft-fasttree-2.1.11, libc6, gensoft-mafft-7.467, gensoft-mash-2.2, gensoft-blast+-2.10.1, gensoft-iq-tree-1.6.12, gensoft-adm-python-3.8.1, gensoft-trimal-1.4.1, gensoft-diamond-2.0.6 Filename: pool/main/gensoft-phylophlan-3.0.2_2.0_amd64.deb Size: 71471848 MD5sum: c8733e6520a0aec0b930d7acd8d7c00d SHA1: d92c3ff58ae12d4ca22616d5b3802d544f8d72a8 SHA256: 3f5d31144d55ada470db75c70a22a62c4d20e0252848a949c11af235a485cde9 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-phylophlan-3.1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 234581 Depends: gensoft-diamond-2.0.15, libc6, gensoft-mafft-7.505, gensoft-fasttree-2.1.11, gensoft-raxml-8.2.12, gensoft-adm-python-3.8.1, gensoft-trimal-1.4.1, gensoft-iq-tree-1.6.12, gensoft-blast+-2.15.0, gensoft-mash-2.3, gensoft-muscle-3.8.1551 Filename: pool/main/gensoft-phylophlan-3.1.1_1.0_amd64.deb Size: 72301802 MD5sum: ed52998ea8a59f91b578cc3bcc42c081 SHA1: 25c9c6f95ad75d663879f51abae9b519632efef1 SHA256: 81e3d18d2494edaed9c258a786647f5b5d180b275ad961d425c3d08d0237b7a1 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-phyml-3.0.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1358 Depends: libc6, zlib1g Filename: pool/main/gensoft-phyml-3.0.1_2.0_amd64.deb Size: 684192 MD5sum: 792128cce1bb5c60019b30ee098c9c7f SHA1: c41bb22210b923a6d38ea057237133023afafebf SHA256: 90ef4aa69363d82c3ce1bae4e3363ecd07ce5d4c2bf70b9861512699013cdc72 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood License: unknown Vendor: Institut Pasteur Package: gensoft-phyml-3.3.20190909 Version: 2.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 4655 Depends: gensoft-openmpi-4.0.5, zlib1g, libc6 Filename: pool/main/gensoft-phyml-3.3.20190909_2.0_amd64.deb Size: 2892444 MD5sum: fc38832f116fce99a92b6121f4643f16 SHA1: 8cfb059f9853b836f487bb5533ec60a395d321df SHA256: c35deb6c7b84a44d31da50c313ba54595ee39ce8a4a708b1f565d757dcb93b4e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood License: unknown Vendor: Institut Pasteur Package: gensoft-phyml-bayes-3.0.1b Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2061 Depends: libc6 Filename: pool/main/gensoft-phyml-bayes-3.0.1b_1.0_amd64.deb Size: 1113430 MD5sum: bc659dee0791fc2317b176f9671379b8 SHA1: 7e6d3393571037c1d7295658de57b479671f8048 SHA256: 32b7ada634aa4df85bf150c2c8033f6d3c918ff127e14d45221f9feef0ee351f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PhyML with aBayes branches support algorithm License: unknown Vendor: Institut Pasteur Package: gensoft-phyml-cat-3.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 998 Depends: libc6 Filename: pool/main/gensoft-phyml-cat-3.0_1.0_amd64.deb Size: 495552 MD5sum: a4b59a4430f6bb59cf30ef65aad2efda SHA1: 49eb2e9edb4b272427f58126407e9d90af9f59ba SHA256: 7336039c56a77a9480ca739b39e3f68d66fab1734381e91c28b4dff814200f42 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PhyML with structure based models License: unknown Vendor: Institut Pasteur Package: gensoft-phyml-sms-1.8.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2163 Depends: gensoft-r-3.6.2, libc6, bc Filename: pool/main/gensoft-phyml-sms-1.8.1_1.0_amd64.deb Size: 1161608 MD5sum: c250c85a6bb485660591c57e362a4cb5 SHA1: c841d676e5202173f4ab7c98fa255b5f61849607 SHA256: 08fa567e4e7f8a0843a4e1a2a62e352b1a98b1f105fb1cea577d862cc6ff8868 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SMS determines the evolutionary model which best fits the input data in order to infer a phylogenetic tree. It evaluates the models according to a criterion to select the best model. This criterion can be the AIC (Aikake Information Criterion ) or the BIC (Bayesian Information Criterion). License: unknown Vendor: Institut Pasteur Package: gensoft-phyml-structure-na Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 908 Depends: libc6 Filename: pool/main/gensoft-phyml-structure-na_1.0_amd64.deb Size: 458920 MD5sum: 67ea51223f0dce385d688949fe9e5ba0 SHA1: 8e32b1b7279b63887485eec73fa32061a7e08fd9 SHA256: 1d62e84e4d9b7ab09624c5d07548e07b041f7dd8dc8a4b9ce2b0a1e1f4f79a07 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: maximum-likelihood framework phylogenetic mixture models License: unknown Vendor: Institut Pasteur Package: gensoft-phynteny-0.1.13 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1712738 Depends: libgcc-s1, gensoft-cudnn-11.x-v8.7.0.84, gensoft-cuda-11.3, libc6, libstdc++6, gensoft-adm-python-3.8.1, zlib1g Filename: pool/main/gensoft-phynteny-0.1.13_1.0_amd64.deb Size: 672222596 MD5sum: cb8d0b841c65ba5c29bc62e762f7438a SHA1: 339960ee3578f7482d563ed201316c63a9c09234 SHA256: 4b11989479e07078dbc61fa51555127ef11bfd60b346cd4b5354a816f413d92d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny License: unknown Vendor: Institut Pasteur Package: gensoft-picard-tools-1.94 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 45420 Depends: gensoft-graalvm-ce-java19-22.3.1 Filename: pool/main/gensoft-picard-tools-1.94_2.0_amd64.deb Size: 42610992 MD5sum: 500e037ce8cdfb621b811ba947ad43ea SHA1: 3dbcddc42a39b0482731f41a4504b64096d23453 SHA256: af6b95c4e0ea7281723345e7789d924b4101341093952697c4f6009787d61b4d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: command-line utilities that manipulate SAM files License: unknown Vendor: Institut Pasteur Package: gensoft-picard-tools-2.22.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 17111 Depends: gensoft-graalvm-ce-java19-22.3.1 Filename: pool/main/gensoft-picard-tools-2.22.0_2.0_amd64.deb Size: 16232534 MD5sum: ef086ee0857ef41a06ee2e1999c97630 SHA1: 9b8b17ac82f6612313184bca20305f46381012a1 SHA256: 1a4b133948b6d2d764b993720c99e334a80349a689e8eec55343de9bd3b2ccd0 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: command-line utilities that manipulate SAM files License: unknown Vendor: Institut Pasteur Package: gensoft-picard-tools-2.23.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 35002 Depends: gensoft-r-3.6.2, gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-picard-tools-2.23.3_1.0_amd64.deb Size: 33196738 MD5sum: fa07e1c8c3ceba9a762eef2c470d5f9b SHA1: a8fb9c27a3f73c08ee6aa4011e8d5cf66951bc74 SHA256: f7461cd46ac3d2c713e49649d9e6be1b7533a5fb937b9e58a24e5725bd6d7f06 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: command-line utilities that manipulate SAM files License: unknown Vendor: Institut Pasteur Package: gensoft-picrust2-2.5.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 465300 Depends: gensoft-gappa-0.8.3, gensoft-hmmer-3.2.1, gensoft-r-4.2.1, gensoft-epa-ng-0.3.8, gensoft-glpk-4.65, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-picrust2-2.5.1_1.0_amd64.deb Size: 218955242 MD5sum: 6dceecf129a3ec92eeb6c54f046aea49 SHA1: e691b3caf88d0a21f3f4427984b9decaf11e2795 SHA256: 095b64ce26f840348af6852f573247299a6dc82508d9c01fc6d4d289262ec827 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a software for predicting functional abundances based only on marker gene sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-piggy-1.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 73 Depends: gensoft-mafft-7.453, gensoft-adm-perl-5.30.1, gensoft-parallel-20200222, gensoft-cd-hit-4.8.1, gensoft-blast+-2.10.0 Filename: pool/main/gensoft-piggy-1.5_1.0_amd64.deb Size: 17736 MD5sum: 6a11a3b48862485426272baaaefec7a8 SHA1: 984898cacbb835b89ed780ddde0b7ba734eb1eb1 SHA256: 33488a947a6ad26020411ff7a28bcebaaab6c5cc39393a9bcd6f389742cd1a76 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Piggy is a tool for analysing the intergenic component of bacterial genomes. It is designed to be used in conjunction with Roary License: unknown Vendor: Institut Pasteur Package: gensoft-pigz-2.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 299 Depends: libc6, zlib1g Filename: pool/main/gensoft-pigz-2.4_1.0_amd64.deb Size: 147252 MD5sum: 1b14996cc8c98d0e260f4433baf54cb1 SHA1: 347767f3587063fd2ddb9eeb4de26da9522aca7c SHA256: 5327434029d9dd6eb7a3285785adf9d103d9d3695f3c2ef635f0df1dd49682ce Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: pigz, which stands for Parallel Implementation of GZip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. License: unknown Vendor: Institut Pasteur Package: gensoft-pigz-2.8 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 347 Depends: zlib1g, libc6 Filename: pool/main/gensoft-pigz-2.8_1.0_amd64.deb Size: 176536 MD5sum: c40582a59efb7379e8e8af38798433f6 SHA1: be248cc3033106eecb5f4ca4145b77c18e41c95a SHA256: 1847de79f94d618861ee90b058e104889e4e0ff1b7820d6172bf205f06b42530 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: pigz, which stands for Parallel Implementation of GZip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. License: unknown Vendor: Institut Pasteur Package: gensoft-pilercr-1.06 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 268 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-pilercr-1.06_1.0_amd64.deb Size: 134800 MD5sum: 48c5ccf69be9544169d5d9fe082b2387 SHA1: 6fc08fc8daab32958e7288cc1e19921fd420912c SHA256: 66f07e613848d6f6e7f34fc62bb35bc1df4b3997daccf8310581b699916b7d9f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Identification and analysis of CRISPR repeats. License: unknown Vendor: Institut Pasteur Package: gensoft-pilon-1.23 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7216 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-pilon-1.23_1.0_amd64.deb Size: 6852682 MD5sum: 7794f76c172b5b21b39f6e526df58e78 SHA1: 2806eed9a979544908c68058affd2317171a5600 SHA256: 2c853772c18ad7a2b9e8b7c9dbdce9fc0edfb2b46203cf3eb8b4caa2afac8fa1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Pilon is a software tool which can be used to automatically improve draft assemblies, find variation among strains, including large event detection License: unknown Vendor: Institut Pasteur Package: gensoft-pima-1.40 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 932 Depends: libc6 Filename: pool/main/gensoft-pima-1.40_1.0_amd64.deb Size: 273860 MD5sum: a2f6027ed4df65b5347bde00d008c0a8 SHA1: 9c8bdc2bb1a3b14125fadab66b8a9201671babd4 SHA256: de3e4d13fce5a3977957ea25d9e6a31ed43d83d704d2c0490bf7ee6687bf8666 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Pattern-Induced Multi-sequence Alignment program. Performs a multi-sequence alignment of a set of (presumably related) sequences using an extension of our covering pattern construction algorithm License: unknown Vendor: Institut Pasteur Package: gensoft-pindel-0.2.5b8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 27310 Depends: zlib1g, libc6, gensoft-gcc-9.2.0, gensoft-htslib-1.10, gensoft-curl-7.68.0, gensoft-xz-5.2.4, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-pindel-0.2.5b8_1.0_amd64.deb Size: 6580948 MD5sum: 69f96cadca6c0a0ec3b06d193a52ac0d SHA1: b18ceae0f3ea4db3a67be870ea0d171481201efe SHA256: ded14856e145b67ed3b79dd5dc1e368617fd6c0bc31a40eb862cc48d6c198453 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads. License: unknown Vendor: Institut Pasteur Package: gensoft-pipeviewer-1.6.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 101 Depends: libc6 Filename: pool/main/gensoft-pipeviewer-1.6.6_1.0_amd64.deb Size: 41552 MD5sum: 09e492746f789110d1a7c3a06c3f78ac SHA1: 92ee96bf325764e99b753c1978bff433854659ea SHA256: 4f8627ed63979fb084a53dffb2aa75aa9a89017c0239542edd736acdf7f23a32 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a terminal-based tool for monitoring the progress of data through a pipeline. License: unknown Vendor: Institut Pasteur Package: gensoft-pixman-0.38.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 23699 Depends: libc6 Filename: pool/main/gensoft-pixman-0.38.4_1.0_amd64.deb Size: 5002524 MD5sum: b8886286e0ca230664d883d9b8708261 SHA1: c86fe71da8051959fbf9509d0d4233fa85df784e SHA256: 6b6360113718889a694f5669316c3d1b9936c03f2bf07ef196c0d9723159acaa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Pixman is a library that provides low-level pixel manipulation features such as image compositing and trapezoid rasterization. License: unknown Vendor: Institut Pasteur Package: gensoft-pixy-2.0.0.beta12 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 396966 Depends: libc6, libstdc++6, libgcc-s1, gensoft-adm-python-3.11.5, gensoft-htslib-1.21, zlib1g Filename: pool/main/gensoft-pixy-2.0.0.beta12_1.0_amd64.deb Size: 118808640 MD5sum: c70565bfad62c668f2e3c7f98e9cfc49 SHA1: b02f928329a3034f729d733c88bba40d895d8290 SHA256: 052c9db340b2a9c60eb9dc1ca2afeaa80a5de34840062143487561b041940e9d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: An unbiased estimation of average nucleotide diversity within (<80>) and between (dxy) populations from a VCF License: unknown Vendor: Institut Pasteur Package: gensoft-pkg-config-0.29.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2295 Depends: libc6, libbz2-1.0, zlib1g Filename: pool/main/gensoft-pkg-config-0.29.2_1.0_amd64.deb Size: 805978 MD5sum: a7a21637b1cba5d873a92516bcc46aa2 SHA1: f6c86f849962e1e8db1e2e2be1ce85e98a572b9d SHA256: 80331751e47437aa16c02b30a4b6b4b1306074ed0477aa558deeadb371c72e65 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: pkg-config is a helper tool used when compiling applications and libraries. License: unknown Vendor: Institut Pasteur Package: gensoft-plascope-1.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1817669 Depends: gensoft-spades-3.14.0, bash, gensoft-centrifuge-1.0.4-beta Filename: pool/main/gensoft-plascope-1.3.1_1.0_amd64.deb Size: 703684826 MD5sum: 98c830fa98aab25cba5b2e987baba443 SHA1: 147abdaa4787d21a05f7b3a2334fc4f9cf6e41d5 SHA256: fecd60349744c32c2c64daf4e04d6777ade72e4fa6a47fb9a1d62ae52073f808 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: contigs classification from a WGS assembly according to their location (i.e. plasmid or chromosome). It License: unknown Vendor: Institut Pasteur Package: gensoft-plasmidec-1.4.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1310725 Depends: zlib1g, gensoft-libxml2-2.9.10, gensoft-platon-1.6, gensoft-xz-5.2.5, gensoft-gcc-9.2.0, gensoft-curl-7.68.0, gensoft-libiconv-1.16, gensoft-rfplasmid-1.0, libssl1.1, gensoft-r-4.4.0, gensoft-centrifuge-1.0.4-beta, gensoft-libpng-1.6.37, libc6, liblzma5 Filename: pool/main/gensoft-plasmidec-1.4.0_1.0_amd64.deb Size: 1071014632 MD5sum: 024d2777c5fbea29008de5c718141074 SHA1: a913efd358390fd0b65ad36a04399b38b506d99d SHA256: 16ae07b4b50fb98444cdb4347c3a60dbc9b622b9322068706cb19f504d7347ff Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Binning plasmid-predicted contigs using short-read graphs License: unknown Vendor: Institut Pasteur Package: gensoft-plasmidfinder-2.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 85430 Depends: libc6, gensoft-adm-python-3.8.1, gensoft-blast+-2.10.0, gensoft-kma-1.3.4 Filename: pool/main/gensoft-plasmidfinder-2.1.1_1.0_amd64.deb Size: 25101974 MD5sum: 52ed85b48ee1f84b653b218f91862bfd SHA1: 70f91f19c6cbe3a31e2e6b0b77c61578418551b5 SHA256: 096cb46dcd037bc9a4e0736b7af58c43383b70ab7c572f347302dd3ed103d180 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PlasmidFinder identifies plasmids in total or partial sequenced isolates of bacteria. License: unknown Vendor: Institut Pasteur Package: gensoft-plasnet-0.5.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 177568 Depends: libc6, gensoft-adm-python-3.9.16 Filename: pool/main/gensoft-plasnet-0.5.1_1.0_amd64.deb Size: 52951318 MD5sum: cf7f9ac6e1b05a9f0319209cd548a465 SHA1: 51d02a50070ee8662a9e984b13e5868e2a41ce91 SHA256: fd1361794826318b84e50def8cbdd0bccaa534a72dbcb1b65a356d85c41c7238 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Clustering, visualising and exploring plasmid networks License: unknown Vendor: Institut Pasteur Package: gensoft-plassembler-1.6.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 254867 Depends: gensoft-dnaapler-0.7.0, gensoft-chopper-0.7.0, libc6, gensoft-fastp-0.23.4, gensoft-mash-2.3, gensoft-flye-2.9, gensoft-raven-1.8.3, gensoft-minimap2-2.26, gensoft-adm-python-3.8.1, gensoft-samtools-1.18, gensoft-unicycler-0.5.0, gensoft-canu-2.2 Filename: pool/main/gensoft-plassembler-1.6.2_1.0_amd64.deb Size: 72872998 MD5sum: e31b204b7bd77036f882f0fd03726a27 SHA1: 277e2984285740b3a088d56817dbc7f3d3fa6342 SHA256: 546172c46e2ff941b678f6a20c503e14aca494bc9aecee09eecedd6056a8523b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates License: unknown Vendor: Institut Pasteur Package: gensoft-plassembler-1.7.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 241807 Depends: gensoft-fastp-1.0.1, libc6, gensoft-samtools-1.21, gensoft-flye-2.9.6, gensoft-raven-1.8.3, gensoft-dnaapler-0.7.0, libgcc-s1, gensoft-minimap2-2.28, libstdc++6, gensoft-chopper-0.7.0, gensoft-adm-python-3.8.1, gensoft-mash-2.3, zlib1g, gensoft-canu-2.3, gensoft-unicycler-0.5.0 Filename: pool/main/gensoft-plassembler-1.7.1_1.0_amd64.deb Size: 73068244 MD5sum: 92fe38405e45df1042f3452ac7c5358b SHA1: 505a7605340c01da322c71daf68ac67250b0d05a SHA256: 26287fb48d51875073e31ddca90f69bda361f6048904e32062cc22963642ba42 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates License: unknown Vendor: Institut Pasteur Package: gensoft-plassembler-1.8.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 240568 Depends: gensoft-canu-2.3, zlib1g, libstdc++6, gensoft-minimap2-2.28, libc6, gensoft-raven-1.8.3, gensoft-fastp-1.0.1, gensoft-adm-python-3.8.1, gensoft-flye-2.9.6, gensoft-dnaapler-1.3.0, gensoft-chopper-0.7.0, gensoft-samtools-1.21, libgcc-s1, gensoft-mash-2.3, gensoft-unicycler-0.5.0 Filename: pool/main/gensoft-plassembler-1.8.0_1.0_amd64.deb Size: 72550282 MD5sum: b7d69521fa113419659755bdb106f73b SHA1: 45f453a6f80580cc226b7df28f486391344fbb00 SHA256: 9757cda7dc8999d9c028528892e623719702b460cef2c30e3a31615dbfafcb5b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates License: unknown Vendor: Institut Pasteur Package: gensoft-plasx-0.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 525908 Depends: gensoft-adm-python-3.8.1, gensoft-mmseqs2-10-6d92c, libc6 Filename: pool/main/gensoft-plasx-0.1_1.0_amd64.deb Size: 165764956 MD5sum: 1bde6bae818d3ffe814039743242009a SHA1: 549dbc5c1bce32a0fede3810f3eadb0ded02ade6 SHA256: f5b7ae1aab7a09021e96dc857673c5f5fd5bfa429982f123d25d1d39c29fdd89 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a machine learning classifier for identifying plasmid sequences based on genetic architecture License: unknown Vendor: Institut Pasteur Package: gensoft-platanus-v1.2.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2360 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-platanus-v1.2.4_1.0_amd64.deb Size: 1092132 MD5sum: 09ad4ab272ce13d8685160f7160e73ac SHA1: 16d46ab344cdaa8e5f940f474ee371e8e05d1531 SHA256: c8c146ff87560a5aca0a5aea13237061fde43081eddade528b313cecc72cc77c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PLATform for Assembling NUcleotide Sequences Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-platon-1.6 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2925398 Depends: libc6, gensoft-diamond-2.0.6, gensoft-prodigal-2.6.3.pp1, gensoft-adm-python-3.8.1, gensoft-infernal-1.1.4, gensoft-hmmer-3.3, gensoft-mummer-4.0.0rc1, gensoft-blast+-2.10.1 Filename: pool/main/gensoft-platon-1.6_2.0_amd64.deb Size: 1717104736 MD5sum: 71e1979a6156d55bd047b0c906787843 SHA1: 4c5b24d215bde2f6b709a584d7b483e07ba65111 SHA256: 729697692687f485b69a752254eecb041515715852bb7f736e43d5a6681a829a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: identification and characterization of bacterial plasmid contigs from short-read draft assemblies License: unknown Vendor: Institut Pasteur Package: gensoft-platypus-0.8.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 19816 Depends: gensoft-curl-7.68.0, libc6, zlib1g, gensoft-htslib-1.10, gensoft-xz-5.2.4, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-platypus-0.8.1_1.0_amd64.deb Size: 6072040 MD5sum: a45709164610eb7b1b4c4bf85d3a9bb1 SHA1: 0167e5148e74287c251f44a1e5f569c97804c99a SHA256: 811613aabb5c47ab7173cb78944221546633e93751c54ebd087bb90158a0a793 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. Platypus can detect SNPs, MNPs, short indels, replacements and (using the assembly option) deletions up to several kb. License: unknown Vendor: Institut Pasteur Package: gensoft-pling-1.0.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 276226 Depends: gensoft-bakta-1.8.2, libc6, gensoft-glpk-4.65, gensoft-mummer-3.23, gensoft-minimap2-2.26, gensoft-panaroo-1.5.0, gensoft-plasnet-0.5.1, gensoft-sourmash-4.4.0, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-pling-1.0.3_1.0_amd64.deb Size: 85768364 MD5sum: f7d4f7a3890202944c510f415e4b63fb SHA1: 112fe6fadb69a7cf5e96a721a1ab66227da91fbf SHA256: ac91e6ca3ab6a312102829e10767e986e3d1ca9f67d6e3c83ddf5b4514ca6257 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Pling is a software workflow for plasmid analysis using rearrangement distances, specifically the Double Cut and Join Indel (DCJ-Indel) distance. License: unknown Vendor: Institut Pasteur Package: gensoft-plink-1.07 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3419 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-plink-1.07_2.0_amd64.deb Size: 1474032 MD5sum: f53256d499a08a5ff752444717cca066 SHA1: ca21e014418ede5f000a0b6c4274eec373085e6a SHA256: d0b1cec665dc0ebe2871d92d96fb7e632f15bb23fe3b818bd8eae4c6bd042a44 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Analysis of genotype/phenotype data License: unknown Vendor: Institut Pasteur Package: gensoft-plink-1.90b6.16 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 40680 Depends: libc6 Filename: pool/main/gensoft-plink-1.90b6.16_2.0_amd64.deb Size: 8898142 MD5sum: 333d6fb46b9ad6022de64a8826bb502c SHA1: f332e0fb9a0040c397033ad3faa47ba9389407fc SHA256: a509e86918ec23731e11e17038dfea8bf1d6796fedebbd24baa4366c4625466e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Analysis of genotype/phenotype data License: unknown Vendor: Institut Pasteur Package: gensoft-plink-1.90p Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 11263 Depends: gensoft-blas-3.8.0, libc6, zlib1g, gensoft-gcc-9.2.0, gensoft-atlas-3.10.2 Filename: pool/main/gensoft-plink-1.90p_1.0_amd64.deb Size: 3944722 MD5sum: e17bacfd9a60d591e33c0ac68d2e9263 SHA1: feedea65d2abf4f5c86e9be68068deabfa024c9d SHA256: f80288ac1828d37c2153105d8c6d6b69e8c7a7f72fa98f27c8e9db7832d8afe7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Analysis of genotype/phenotype data License: unknown Vendor: Institut Pasteur Package: gensoft-plink-2.0.0-a.6.11 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 48989 Depends: libc6, gensoft-lapack-3.10.0, gensoft-gcc-9.2.0, gensoft-atlas-3.10.2, zlib1g, gensoft-zlib-1.3.1 Filename: pool/main/gensoft-plink-2.0.0-a.6.11_1.0_amd64.deb Size: 15242476 MD5sum: 310bf4887b4833b8b7aa9609501dc3aa SHA1: ad03fbcad74830ffba4d92a3743bda04ee2e49ad SHA256: cb79caf6884df866c0b90a3f6d572db67ee21dfbcba1f88eb8496b55be9ce711 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Analysis of genotype/phenotype data License: unknown Vendor: Institut Pasteur Package: gensoft-plink-2.00a3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 30867 Depends: gensoft-atlas-3.10.2, zlib1g, libc6, gensoft-gcc-9.2.0, gensoft-lapack-3.10.0 Filename: pool/main/gensoft-plink-2.00a3_2.0_amd64.deb Size: 9394546 MD5sum: a8098006d59599edc8fafc0338112b7c SHA1: 015af1ee0ebcb2fde5cf0a71dd65b2493d1963f7 SHA256: bfbc4c1bd1c53c8d22766ce0d9de9ddac6ff81c3136a0cc546a0f6e904738e50 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Analysis of genotype/phenotype data License: unknown Vendor: Institut Pasteur Package: gensoft-plumed-2.7.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 33183 Depends: gensoft-openmpi-4.0.5, gensoft-lapack-3.9.0, zlib1g, gensoft-gsl-2.6, gensoft-boost-1.72.0, gensoft-fftw-3.3.8, gensoft-blas-3.8.0, gensoft-xdrfile-1.1.4, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-plumed-2.7.2_1.0_amd64.deb Size: 8002404 MD5sum: ef47266de5abdb238fd73588dd9300b1 SHA1: eef6fba76e903437087974c8e6ebe4aeba1dad44 SHA256: 8fc8f50631760e9f117dee47ce591b2fcf120e88c5bb37be5711a15b159eafd3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an open-source, community-developed library that provides a wide range of different methods, which include enhanced-sampling algorithms free-energy methods tools to analyze the vast amounts of data produced by molecular dynamics (MD) simulations. License: unknown Vendor: Institut Pasteur Package: gensoft-poa-v2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 214 Depends: libc6 Filename: pool/main/gensoft-poa-v2_1.0_amd64.deb Size: 75688 MD5sum: 88543abf3b1373baa19fdc3d5da531d4 SHA1: c09019f319d00ea1a66c720c7fe23953da62cf64 SHA256: 0e3b8585a8d387c1756cb8d7064a84bac6034804e012d5e59856000a5edc0ecb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: POA is Partial Order Alignment, a fast program for multiple sequence alignment in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. License: unknown Vendor: Institut Pasteur Package: gensoft-pod5-0.2.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 272068 Filename: pool/main/gensoft-pod5-0.2.4_1.0_amd64.deb Size: 84259104 MD5sum: 207ea0780b25b0e43b9872fa464c8416 SHA1: a99e8f5187e966b41af0785f5145740511d11068 SHA256: 378510a7184766ed30df9ac59e3a5c0b3f7c5cfd55b027ccd0bdcfc510eee36c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Pod5 - a high performance file format for nanopore reads License: unknown Vendor: Institut Pasteur Package: gensoft-pointfinder-3.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 133943 Depends: gensoft-blast+-2.10.0, libc6, gensoft-kma-1.2.22, libgcc-s1, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-pointfinder-3.1.1_1.0_amd64.deb Size: 28004070 MD5sum: 5d03e4adf9476b59d86731fe0a21e6e0 SHA1: f9da5bc725664936030c07c59edbf08200854ea4 SHA256: 661becc55fc9c56de9ff4e05e03c4c2627f41292fafb4b2991de5756cc6762af Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The PointFinder service contains one python script PointFinder.py which is the script of the latest version of the PointFinder service. The method detects chromosomal mutations predictive of drug resistance based on WGS data. License: unknown Vendor: Institut Pasteur Package: gensoft-polypolish-0.5.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6247 Depends: zlib1g, libc6, gensoft-adm-python-3.8.1, libgcc-s1 Filename: pool/main/gensoft-polypolish-0.5.0_2.0_amd64.deb Size: 1787518 MD5sum: 7e8b694dbd3b87185d3aaf04acb04710 SHA1: 6b420dbd037d90fa7c3fe60e7f809c2eb3177dc4 SHA256: 01ed68e59aea58b8312693504c08f0f0004af608af0fdce2e5737488d5562bba Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a short-read polishing tool for long-read assemblies License: unknown Vendor: Institut Pasteur Package: gensoft-polypolish-0.6.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 7150 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-polypolish-0.6.0_1.0_amd64.deb Size: 2109772 MD5sum: c7bfbfb7e6c7dab2723e5dadafde80bd SHA1: 27bb519dc5a4a608dfe9d293e6ede4cba04aaad1 SHA256: 1ff4618720f90c1feb344635001f8550ded8cd2c2564d97d8509d3556b5d525c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a short-read polishing tool for long-read assemblies License: unknown Vendor: Institut Pasteur Package: gensoft-popoolationte2-v1.10.03 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3477 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-popoolationte2-v1.10.03_1.0_amd64.deb Size: 1562432 MD5sum: b06594b3e8a3639ce4065c8599ee1515 SHA1: 239fa256cddebfc77270f333e144615587f0d5f4 SHA256: 4bb255cad8908cb8e453bbbcecf59996cdefc642f7bce96b20703c32673d7697 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: enables comparative population genomics of transposable elements (TE). As a major innovation PoPoolation TE2 introduces the physical pileup file which allows to homogenize the power to identify TEs and thus enables an unbiased comparison of TE abundance between samples, where samples could be pooled populations, tissues or sequenced individuals License: unknown Vendor: Institut Pasteur Package: gensoft-poppler-23.02.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 57116 Depends: gensoft-xorg-libs-1.1, gensoft-openjpeg-2.3.1, gensoft-gcc-9.2.0, zlib1g, gensoft-expat-2.4.1, gensoft-libtiff-4.1.0, gensoft-libjpeg-turbo-2.0.6, libgcc-s1, gensoft-fontconfig-2.13.91, gensoft-cairo-1.17.4, libbz2-1.0, gensoft-pixman-0.38.4, gensoft-libpng-1.6.37, gensoft-xz-5.2.5, libc6, gensoft-freetype-2.10.1 Filename: pool/main/gensoft-poppler-23.02.0_1.0_amd64.deb Size: 18774692 MD5sum: 34e54d3d93a06d5da521bbd4d8c61772 SHA1: bbea2c9a1ca04e9b6c7adc008bf4a0c4dda95ce6 SHA256: ede62440f9ecc49b2dddceaa299f824a86649c6e89321b430ea693c436696019 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Poppler is a PDF rendering library based on the xpdf-3.0 code base. License: unknown Vendor: Institut Pasteur Package: gensoft-poppunk-2.0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 500655 Depends: gensoft-mash-2.2, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-poppunk-2.0.2_1.0_amd64.deb Size: 157550378 MD5sum: 5f37f0e17f20f6d7319b33437aa56970 SHA1: 4a09ef8bdb51e56ec6f1df61ade479175a1284ca SHA256: da9931db68af839dd5223405b2ba66258dea4c5ef212d97f0deb9953bb9871e5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Population partitioning using nucleotide k-mers License: unknown Vendor: Institut Pasteur Package: gensoft-poppunk-2.6.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 10164179 Depends: gensoft-gcc-9.2.0, libc6, gensoft-icu-65.1, gensoft-xz-5.2.5, gensoft-rapidnj-2.3.2, libstdc++6, gensoft-adm-python-3.10.7, gensoft-openblas-0.3.26, gensoft-expat-2.4.1, gensoft-hdf5-1.10.6, gensoft-zstd-1.4.4, zlib1g, gensoft-gmp-6.2.0, gensoft-boost-1.81.0, libgcc-s1, libbz2-1.0 Filename: pool/main/gensoft-poppunk-2.6.5_1.0_amd64.deb Size: 1702979180 MD5sum: 2579adb2e3c82c4f490e83db270cb4fc SHA1: 0066aaa3b6e544367ba71c5fee4f28f47b0e4a8a SHA256: 9ed7c24582206290163f0c36aaaa354243db498ca0b1fcc15ccc45b7061ff3f1 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Population partitioning using nucleotide k-mers License: unknown Vendor: Institut Pasteur Package: gensoft-popscle-0.1-beta Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 726 Depends: libc6, gensoft-xz-5.2.4, gensoft-htslib-1.10, zlib1g, gensoft-curl-7.68.0, libbz2-1.0, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-popscle-0.1-beta_1.0_amd64.deb Size: 294788 MD5sum: b1449b655436d0a40a378ca64429a6e1 SHA1: 43ff733443ac630aae9c06fcb2206dc1cc03e660 SHA256: 243c8c3fd489cd62e6878ffbbadd1f76f5fe5539b50f517cf0aa4647e703ce48 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools License: unknown Vendor: Institut Pasteur Package: gensoft-porechop-0.2.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 9073 Depends: libc6, gensoft-gcc-9.2.0, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-porechop-0.2.4_1.0_amd64.deb Size: 2682274 MD5sum: 4132de021af4f8f1d4a0360a75da2b8f SHA1: f7bd24a776f41c3a1d693449b5665fbb528c484a SHA256: beb5c8cdf419b617537817d3a3b929f7bc4874b8a3028ab8add4f98714fac1e6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity. License: unknown Vendor: Institut Pasteur Package: gensoft-porechop-abi-0.5.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 28389 Depends: gensoft-gcc-9.2.0, libc6, gensoft-adm-python-3.8.1, zlib1g Filename: pool/main/gensoft-porechop-abi-0.5.0_1.0_amd64.deb Size: 8763634 MD5sum: 60c224a9d8853a81de3aa606d08c673a SHA1: 2b9c81f9e9fd388be5234c0b15fce920c213b81d SHA256: 78185bdd121857d0653bfce44305ada9fb4db40782004b15a691526da94f476d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Porechop_ABI (ab initio) is an extension of Porechop whose purpose is to process adapter sequences in ONT reads. License: unknown Vendor: Institut Pasteur Package: gensoft-portcullis-1.2.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 394624 Depends: libstdc++6, zlib1g, gensoft-gcc-9.2.0, gensoft-adm-python-3.8.1, libc6, gensoft-samtools-1.21, gensoft-boost-1.81.0, libgcc-s1, libcrypt1 Filename: pool/main/gensoft-portcullis-1.2.4_1.0_amd64.deb Size: 113100170 MD5sum: 5f9e95f671a3e5300fb51d8a6b61ea53 SHA1: 865774b2816406a62b217628767817409f4ae260 SHA256: 0ccc425fb85a6200ca9d1bbf171723aa7f663dffd26629c9862c81cad9806c8e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: None License: unknown Vendor: Institut Pasteur Package: gensoft-postgresql-12.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 38870 Depends: libc6, libreadline6, zlib1g, libssl1.1, libtinfo5 Filename: pool/main/gensoft-postgresql-12.1_1.0_amd64.deb Size: 11453478 MD5sum: 41dc2ed1859e97a6eb19046d60616193 SHA1: 55c0de998e637d1158e14f898d2868f23963ff76 SHA256: ca69d60fe72c18f2404d8b978dde4201ee3729a7a5beaad647175bf20e32cadd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an object-relational database management system (ORDBMS) License: unknown Vendor: Institut Pasteur Package: gensoft-powerfit-2.0.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 277400 Depends: libstdc++6, gensoft-adm-python-2.7.17, libgcc-s1, libc6 Filename: pool/main/gensoft-powerfit-2.0.0_1.0_amd64.deb Size: 68612178 MD5sum: 415e49e29a2462d0b78feaecd3f3e6cd SHA1: 119da7620820e4c9ae83e4c3f0a5058e874b3189 SHA256: f18df724a48a3b5ffa63ffc522c90a49b429330468e79810d047f721ccaa4990 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Rigid body fitting of atomic strucures in cryo-electron microscopy density maps License: unknown Vendor: Institut Pasteur Package: gensoft-ppanggolin-1.1.96 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 414803 Depends: gensoft-mmseqs2-13-45111, gensoft-gcc-9.2.0, libc6, gensoft-xz-5.2.5, gensoft-mpfr-4.0.2, libquadmath0, libgcc-s1, gensoft-r-3.6.2, libstdc++6, gensoft-adm-python-3.8.1, libpcre2-8-0, libgfortran5, zlib1g, gensoft-gmp-6.2.0, gensoft-mpc-1.1.0, gensoft-aragorn-1.2.38, gensoft-infernal-1.1.4, gensoft-prodigal-2.6.3.pp1 Filename: pool/main/gensoft-ppanggolin-1.1.96_2.0_amd64.deb Size: 123903128 MD5sum: 9e93648fa624ed8f6d50b886c0407635 SHA1: e5171c7de30b54b5cb84d53e0d9bf9373474e5ba SHA256: 715dd420660aa17a833e434d3c2a44ef94d6f90b03919dda6d8799d198c1fc6d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations License: unknown Vendor: Institut Pasteur Package: gensoft-pplacer-v1.1-alpha19 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 148949 Depends: gensoft-adm-python-2.7.17, libc6 Filename: pool/main/gensoft-pplacer-v1.1-alpha19_1.0_amd64.deb Size: 44277914 MD5sum: cbf15137a10842ff48b02da64e6ad4cf SHA1: 149112e3b0c580c362a3399ebc5c5d41c8d88673 SHA256: 70e3c8251e3eeeccfdea04ba2e0bf548b2d4b95759aeb4c7d3c269107062d66b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: pplacer suite of programs. pplacer places reads on a phylogenetic tree. guppy (Grand Unified Phylogenetic Placement Yanalyzer) yanalyzes them. rppr is a helpful tool for working with reference packages. License: unknown Vendor: Institut Pasteur Package: gensoft-prank-170427 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1188 Depends: gensoft-gcc-9.2.0, libc6, gensoft-bppsuite-2.2.0, gensoft-exonerate-2.4.0, gensoft-mafft-7.453 Filename: pool/main/gensoft-prank-170427_1.0_amd64.deb Size: 475328 MD5sum: f83e45da73c332276f6564bb298ace35 SHA1: cfa76b13c13007fd1227a6802683226ddec28816 SHA256: 9e659e71acab0458b05ee861a9ead0dd90f9379b5ec5cd094f1c2f28fc423d74 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. Its based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences. These pages aim to explain how to install and use PRANK. License: unknown Vendor: Institut Pasteur Package: gensoft-pratt-2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 152 Depends: libc6 Filename: pool/main/gensoft-pratt-2.1_1.0_amd64.deb Size: 71062 MD5sum: 81aed0273c0baa3db4714eaf36b95d80 SHA1: 960170b9c386e8e03461753af2c06b1811ee4522 SHA256: 00e4cd404175f290b5c15b6793d9963fad0f89eb2c6204cb333fe540edb41753 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Pattern discovery tool. License: unknown Vendor: Institut Pasteur Package: gensoft-predator-2.1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 980 Depends: libc6 Filename: pool/main/gensoft-predator-2.1.2_1.0_amd64.deb Size: 313458 MD5sum: ad0430bff778acb4af91bb92e3678c2c SHA1: 67b13659d8844916f261b540834d2d3d6358b41f SHA256: a5e95a69fcef34a4f1e8a47401c768f2bed16569eabe708220d495e0d1b2b2e5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Protein secondary structure prediction software License: unknown Vendor: Institut Pasteur Package: gensoft-preseq-3.2.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 2034 Depends: libbz2-1.0, gensoft-gcc-9.2.0, gensoft-htslib-1.16, gensoft-xz-5.2.5, zlib1g, gensoft-curl-7.68.0, libc6, libssl1.1 Filename: pool/main/gensoft-preseq-3.2.0_1.0_amd64.deb Size: 1420070 MD5sum: b1992e47f8f3e05eaa84b4c7e8ffa267 SHA1: d1ff2c3503bb251cd73203975bf8680d546bc90d SHA256: 751e91d051558fa7320c073c53dab30d262dad168037bb0ab67e4cb8102b04af Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Software for predicting library complexity and genome coverage in high-throughput sequencing License: unknown Vendor: Institut Pasteur Package: gensoft-primer3-2.4.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1896 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-primer3-2.4.0_1.0_amd64.deb Size: 674866 MD5sum: 356993cc84f880fc33967c4d21d860db SHA1: 2f15b787546bb7355d1e20d643f754bf6f38e902 SHA256: f0784da73378ee0f3e68f5bed8606c4164936b6f26d37ae682df679e9bb237c5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PCR primer design tool License: unknown Vendor: Institut Pasteur Package: gensoft-primo-na Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 69 Depends: libc6 Filename: pool/main/gensoft-primo-na_1.0_amd64.deb Size: 27896 MD5sum: 10f44858472e4fc391e2f5f4ea1b9d63 SHA1: 2767d7af4dce24f686661cd0c33c3e0139b1e0e6 SHA256: fc3525d7ca60cc1f78956a2178e04d6204f477500f608b4b07af65c762c98953 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Primer design software (mostly derived from primer 0.5) License: unknown Vendor: Institut Pasteur Package: gensoft-primux-20.07.2014 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 35517 Depends: gensoft-adm-python-2.7.17, csh, gensoft-vmatch-2.3.1, libc6, gensoft-gcc-9.2.0, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-primux-20.07.2014_1.0_amd64.deb Size: 9851720 MD5sum: 2bf0e838c1c4b8980ffd6ea09a1f1cf8 SHA1: 2fce10d3c81d5a49f6af498456f46b14879ef0bc SHA256: 6e666431673e458d3f6dd4b054cb123733884d52553c24602d43e97fb0bd7562 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PriMux is a new software package for selecting multiplex compatible, degenerate primers and probes to detect diverse targets such as viruses. License: unknown Vendor: Institut Pasteur Package: gensoft-prinseq-0.20.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3383 Depends: gensoft-xorg-libs-1.1, zlib1g, gensoft-fontconfig-2.13.91, gensoft-adm-perl-5.30.1, gensoft-cairo-1.16.0, gensoft-freetype-2.10.1, libbz2-1.0, gensoft-expat-2.2.9, libc6, gensoft-pixman-0.38.4, gensoft-libpng-1.6.37 Filename: pool/main/gensoft-prinseq-0.20.4_1.0_amd64.deb Size: 973506 MD5sum: a68daf7e01d8dc4f89779453430a27b1 SHA1: 42a1099f23646b10bfec3c338873505d3fb15e18 SHA256: f641cccda93f94ba0f636b62b90a246e3fd76ec957546864a76c593195adc8bc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PRINSEQ can be used to filter, reformat, or trim your genomic and metagenomic sequence data. It generates summary statistics of your sequences in graphical and tabular format License: unknown Vendor: Institut Pasteur Package: gensoft-prism-1.1.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 80614 Depends: zlib1g, gensoft-bwa-0.7.17, gensoft-shrimp-2.2.3, libc6, gensoft-adm-python-2.7.17, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-prism-1.1.6_1.0_amd64.deb Size: 22274096 MD5sum: 0123ca7b99ad1340f3ee550d8204bbae SHA1: 98d1260bcd08ecbcea8990a4056c605aa96a3cf1 SHA256: 4736e86fb116762c94f10c48a9f3699c51d9f4294e3b35b384ba758472611e17 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs. PRISM_CTX is a tool for detecting inter-chromosome trans-location events. License: unknown Vendor: Institut Pasteur Package: gensoft-probcons-1.12 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 420 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-probcons-1.12_1.0_amd64.deb Size: 218166 MD5sum: 9acbbf97637e62517ca748404c3dbdb8 SHA1: 4cf536d427e9b2d7f9039382a8d2567688922113 SHA256: 7896709ea932fc24f2a9fbd87fb7a812ec1b79bcdda6429ea7de548d8d37a97d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PROBCONS is an efficient protein multiple sequence alignment program, which has demonstrated a statistically significant improvement in accuracy compared to several leading alignment tools. License: unknown Vendor: Institut Pasteur Package: gensoft-probconsrna-1.12 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 348 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-probconsrna-1.12_1.0_amd64.deb Size: 158104 MD5sum: 9052be95c7d5cf8fd05fadfecb6a306d SHA1: e62e88ad805d5aa277d3dc8bbaebd12add0f4df7 SHA256: 289870f21dfcdacfd3f581eee5cc8f3e6051b0e038386b663ed37f5ed5ad9c8d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Probabilistic Consistency-based Multiple Alignment of Nucleotide Sequences. probconsRNA is an experimental version of PROBCONS with parameters estimated via unsupervised training on BRAliBASE II License: unknown Vendor: Institut Pasteur Package: gensoft-proda-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 881 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-proda-1.0_1.0_amd64.deb Size: 364988 MD5sum: f8879c9d00248651af206ddb74676f0c SHA1: 346120f0f43f161683f7aae95875601a0e056062 SHA256: 079dcd8afed0188376dbd8951eb00e8b10d544f17a36c9e12350008ca9d0f018 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: multiple alignment of protein sequences with repeated and shuffled elements. License: unknown Vendor: Institut Pasteur Package: gensoft-prodigal-2.6.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 11860 Depends: libc6 Filename: pool/main/gensoft-prodigal-2.6.3_2.0_amd64.deb Size: 975058 MD5sum: 98af996ebe8f22f7f07edfecd67e01c0 SHA1: fd138a572082180e917590efaafc673d7164c79a SHA256: 2b471bc747201969d478db120215a62564a4c891bf1f008f8b89e7c38ef7c3ed Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program License: unknown Vendor: Institut Pasteur Package: gensoft-prodigal-2.6.3.pp1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 11861 Depends: libc6 Filename: pool/main/gensoft-prodigal-2.6.3.pp1_2.0_amd64.deb Size: 974644 MD5sum: ce647424eb3a8f6c2962da9869ea4ce3 SHA1: 6ac04e1f1dbda9913d384457ab211d07d110de86 SHA256: 6f0fa32a6cf3e97bd4633814d442e18967fc67428f9c173e0514525884305d13 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program License: unknown Vendor: Institut Pasteur Package: gensoft-prodigal-gv-2.9.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 15984 Depends: libc6, zlib1g, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-prodigal-gv-2.9.0_1.0_amd64.deb Size: 1172174 MD5sum: a1b53e2042268e33d3a4eb4ce33d4a92 SHA1: 7d21e322d2e5e6b94a843a0813cbce2a3c3daca5 SHA256: 4eba7338f4c9ac428d2eda50752ce6da11a06a50d63cb855c7efd748ec450530 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes. It includes ten models added to the metagenome mode License: unknown Vendor: Institut Pasteur Package: gensoft-proj-7.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 249404 Depends: libc6, gensoft-curl-7.68.0, gensoft-libtiff-4.1.0, gensoft-sqlite-3.31.0, gensoft-gcc-9.2.0, gensoft-xz-5.2.4, gensoft-libjpeg-turbo-2.0.4 Filename: pool/main/gensoft-proj-7.0.0_1.0_amd64.deb Size: 51388012 MD5sum: 1da9f4ce08816249f904710cdbdc418c SHA1: f644d77b627cbaf7bf44ebf0ee47c112297144ee SHA256: cc3e161d98596bb8031da192de5916174d499c29235ff62194ba2b837762091b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PROJ is a generic coordinate transformation software, that transforms geospatial coordinates from one coordinate reference system (CRS) to another. This includes cartographic projections as well as geodetic transformations. License: unknown Vendor: Institut Pasteur Package: gensoft-proj-9.6.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 15880 Depends: gensoft-pcre2-10.34, libc6, gensoft-libjpeg-turbo-2.0.4, gensoft-gcc-9.2.0, gensoft-libtiff-4.1.0, gensoft-curl-7.68.0, gensoft-xz-5.2.5, gensoft-sqlite-3.31.0 Filename: pool/main/gensoft-proj-9.6.2_1.0_amd64.deb Size: 4124256 MD5sum: 730d6cf5166ba85d78e3054819a206a0 SHA1: 609f4dd1856f7257fb7b9ccc2657bc4becd9040e SHA256: bb2f3644285a3fa3394b7f13676e6ae9ebce249e0ae8d63e304e24ccae769a14 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: PROJ is a generic coordinate transformation software, that transforms geospatial coordinates from one coordinate reference system (CRS) to another. This includes cartographic projections as well as geodetic transformations. License: unknown Vendor: Institut Pasteur Package: gensoft-prokka-1.14.5 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 642917 Depends: gensoft-barrnap-0.9, gensoft-signalp-4.1, libc6, zlib1g, gensoft-infernal-1.1.4, gensoft-xz-5.2.5, gensoft-blast+-2.12.0, gensoft-expat-2.4.1, gensoft-libxml2-2.9.10, gensoft-adm-perl-5.30.1, gensoft-hmmer-3.3, gensoft-minced-0.4.2, libssl1.1, gensoft-aragorn-1.2.38, gensoft-ncbitools-20170106, gensoft-libiconv-1.16, gensoft-prodigal-2.6.3.pp1 Filename: pool/main/gensoft-prokka-1.14.5_2.0_amd64.deb Size: 229612534 MD5sum: a1bd68db6870f08559d6fc8b7afebc5b SHA1: 843b037a503b7e3ad045e30cb5711f203ccecf52 SHA256: 99b2f24e1b38a2033785f0bdbab23c3393019dbce542a5c6e272590a8aed59a2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a software tool for the rapid annotation of prokaryotic genomes. License: unknown Vendor: Institut Pasteur Package: gensoft-proovread-2.14.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 23405 Depends: libc6, gensoft-samtools-1.10, gensoft-blast+-2.10.0, gensoft-shrimp-2.2.3, zlib1g Filename: pool/main/gensoft-proovread-2.14.1_1.0_amd64.deb Size: 6811562 MD5sum: bf9e368b3871fadee2337f7d9f4ec93b SHA1: 4114cf7faf404d501c9889df6fdc5088d9c5bccb SHA256: e9c0143e370da271ff149f19ddc3bdb5997847399467c0a596a677a19cf4a652 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Large-scale high accuracy PacBio correction through iterative short read consensus (Illumina). License: unknown Vendor: Institut Pasteur Package: gensoft-prose-0.02a Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 82 Depends: libc6 Filename: pool/main/gensoft-prose-0.02a_1.0_amd64.deb Size: 31508 MD5sum: d3178cfb033d95d0aaaa93364c9139ba SHA1: ea3f2382c0cbe7abeb6816c94834a1c52f38a3b8 SHA256: a3aeac1b02645ed21417d8dca8c12ba7f55e80ae6de9c6732243b1868de1ffb3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Search for Prosite patterns in protein sequences License: unknown Vendor: Institut Pasteur Package: gensoft-proteinmpnn-8907e66 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6952770 Depends: gensoft-adm-python-3.10.7, libc6, libgomp1, libgcc-s1, zlib1g, libstdc++6 Filename: pool/main/gensoft-proteinmpnn-8907e66_1.0_amd64.deb Size: 3696590100 MD5sum: fae6a5dea9b4b79ff351b89f9519559c SHA1: b3938f141d3c0a0f8cab2953c32bab2a826bf6f2 SHA256: b0423bbfbadea1c803f84897e190d3c3f15589a660c77bbc62f7efdde6dd636c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Robust deep learning based protein sequence design License: unknown Vendor: Institut Pasteur Package: gensoft-prothint-2.6.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 3772 Depends: gensoft-genemark-4.30, zlib1g, gensoft-diamond-0.9.30, libc6, gensoft-adm-perl-5.30.1, gensoft-adm-python-3.8.1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-prothint-2.6.0_1.0_amd64.deb Size: 1253884 MD5sum: 50bdd9d8afc12154a7b8605ae7f5c84e SHA1: bffea6857621bf5769fcaba84766b1210ffb272d SHA256: b8ac9cd27c62e701b91ed7b153647393e6a86bb1013fec8446a994b65230778c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Protein hint generation pipeline for gene finding in eukaryotic genomes License: unknown Vendor: Institut Pasteur Package: gensoft-protobuf-3.11.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 527388 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-protobuf-3.11.3_1.0_amd64.deb Size: 105930162 MD5sum: c922b5491c5a120c5111976e5e342fd6 SHA1: b9b82c7d82d7d6a598d6a31775615f27154f6f23 SHA256: 534b46dda20ec32eac71d4b63f80c477edd53f0e1c778c21b9c22cfbb74f53f6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Protocol Buffers (a.k.a., protobuf) are Google s language-neutral, platform-neutral, extensible mechanism for serializing structured data. License: unknown Vendor: Institut Pasteur Package: gensoft-prottest-2.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3309 Depends: gensoft-graalvm-ce-java8-20.0.0, libc6 Filename: pool/main/gensoft-prottest-2.4_1.0_amd64.deb Size: 1730346 MD5sum: 875ccc36f58df17957345fd94c655d20 SHA1: 1e0d040fb369b67b22764e1bccd1aa9eee7bb6ef SHA256: 5c81848d83ec7dca2a046e6c01fa1ae08c714f13cef52a3407b4427e7653c6aa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PROTTEST (ModelTest relative) is a program based on Phyml for selecting the model of protein evolution that best fits a given set of sequences (alignment). License: unknown Vendor: Institut Pasteur Package: gensoft-provean-1.1.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2192 Depends: gensoft-gcc-9.2.0, gensoft-cd-hit-4.8.1, gensoft-blast+-2.4.0, libc6 Filename: pool/main/gensoft-provean-1.1.5_1.0_amd64.deb Size: 554358 MD5sum: dc3b02f60b7ff9d708b8e2ce2acf9951 SHA1: dbbde0d235447d43615251868167d493341d185f SHA256: ae440c3629cfca0577dcd525cc1979b97765b00f93200a5011901eae20374d0d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Protein Variation Effect Analyzer License: unknown Vendor: Institut Pasteur Package: gensoft-provean-assembly-line-0.4.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 512 Depends: gensoft-samtools-1.21, gensoft-provean-1.1.5, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-provean-assembly-line-0.4.0_1.0_amd64.deb Size: 148896 MD5sum: 76be9e809fcb8712ec359dba7d7ab928 SHA1: 8f3c6bf8622b5195e7e04b2384e597b81bd7fe99 SHA256: f3c49c03a5d9069b14cf85ef1a8674b184ad161f1885b9e19238f275ca5c3691 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Find amino acid substitutions from SNPs and run PROVEAN to estimate functional severity License: unknown Vendor: Institut Pasteur Package: gensoft-prunier-2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 29671 Depends: gensoft-raxml-8.2.12 Filename: pool/main/gensoft-prunier-2.1_1.0_amd64.deb Size: 8715590 MD5sum: 8c9f1f732f28883aa0743363cf8c75d7 SHA1: a7ad1b3020ed089551fd0f329f1354b1ee365de3 SHA256: b87505f45579502ea0336278ee2478d5a55a60123647b30b5b6eb0bc23eafbb6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests License: unknown Vendor: Institut Pasteur Package: gensoft-pseudofinder-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 301940 Depends: libc6, gensoft-adm-python-3.8.1, gensoft-blast+-2.12.0, gensoft-diamond-2.0.15, gensoft-pal2nal-14.1, libgcc-s1, libstdc++6, zlib1g, gensoft-muscle-3.8.1551, gensoft-hmmer-3.3.2, gensoft-paml-4.9j Filename: pool/main/gensoft-pseudofinder-1.1.0_1.0_amd64.deb Size: 83762118 MD5sum: ab2a049f6e96115435b633bd5d7483a8 SHA1: ac861812a010a2ca10e05cdc8feaf906a86ac1af SHA256: 177f55814b35d5aa8619747c27350864cc09ffdac9a37e5837aaa3ca703ff3c3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a bioinformatics tool that detects pseudogene candidates from annotated genbank files of bacterial and archaeal genomes License: unknown Vendor: Institut Pasteur Package: gensoft-psipred-4.02 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 36032 Depends: gensoft-blast-2.2.26, gensoft-blast+-2.10.0, libc6, tcsh Filename: pool/main/gensoft-psipred-4.02_1.0_amd64.deb Size: 14803124 MD5sum: ba4c94d45a7428f83f3e9db19380d7b5 SHA1: 2cd35f7e7c570e453b0ac45d94f0723150c5c5e0 SHA256: eca1cc6259c11a2b7a48e97189d43c9fbae8f4627f4e6aaf1021bba526eb2922 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: PSIPRED is a simple and accurate secondary structure prediction method, incorporating two feed-forward neural networks which perform an analysis on output obtained from PSI-BLAST (Position Specific Iterated - BLAST). Using a very stringent cross validation method to evaluate the methods performance License: unknown Vendor: Institut Pasteur Package: gensoft-psort-981201 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1462 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-psort-981201_1.0_amd64.deb Size: 473708 MD5sum: b4456ce69b3174436a1937803d4b919f SHA1: 895cba2378d338fc97d76520785ac7dcbd2efc7a SHA256: 44791fe0674a0aef27f831ca8c864ec01f6b108c0a93f8616f9a21ab33c60ce9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A program for the prediction of protein localization sites in cells License: unknown Vendor: Institut Pasteur Package: gensoft-pstreams-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1190 Filename: pool/main/gensoft-pstreams-1.0.1_1.0_amd64.deb Size: 212588 MD5sum: b9314bef25fcdec3aa3506d2a9215a4b SHA1: 112ff325369d719a93efc379ebd76a67680b4473 SHA256: b9159451835801509b8ab7dcaf0ebfdd37c6bda58fcf5a2790751ad40fc148d8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A C++ IOStream-based replacement for popen(), allowing I/O on all of the child process stdin, stdout and stderr License: unknown Vendor: Institut Pasteur Package: gensoft-ptools-0.99d Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 533 Depends: zlib1g, gensoft-bwa-0.7.17, gensoft-bowtie2-2.3.5.1, gensoft-taxoptimizer-2.0, gensoft-igblast-1.15.0, gensoft-cutadapt-1.9.1, gensoft-blast-2.2.26, libc6, gensoft-openmpi-4.0.5, gensoft-genomeanalysistk-3.6 Filename: pool/main/gensoft-ptools-0.99d_1.0_amd64.deb Size: 141410 MD5sum: 3f0b99ee446499acb16468a579e1618c SHA1: baa2753df39eb3e10492a9e643b92239c9f344fd SHA256: cf3461e3f79c6fc183926bb6597f0bf1d31cd79f5a2a14f22beb1d59567f8866 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Parallel versions of various tools License: unknown Vendor: Institut Pasteur Package: gensoft-pullseq-1.0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 220 Depends: gensoft-pcre-8.43, zlib1g, libc6 Filename: pool/main/gensoft-pullseq-1.0.2_1.0_amd64.deb Size: 77942 MD5sum: 57c674892c3bf03f867d9e0faec70664 SHA1: 82a19494afaca6aa78d618eeffa02918b378ad2c SHA256: 59108d37c80e25373c614471612fd9f6c81a7c47a4028dd7837d2d65bc4a3368 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Software to extract sequence from a fasta or fastq. Also filter sequences by a minimum length or maximum length. License: unknown Vendor: Institut Pasteur Package: gensoft-puzzle-5.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1430 Depends: libc6 Filename: pool/main/gensoft-puzzle-5.2_1.0_amd64.deb Size: 796364 MD5sum: faeee0717d24c8bcf7747edb890efb6c SHA1: 5e533bb688699903f540d55a2d580c96445191d8 SHA256: 74504633379be7fd095c9d133454c538e111a24aff3b9ce6b63a8a6721b2895e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood License: unknown Vendor: Institut Pasteur Package: gensoft-pyani-0.2.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 282951 Depends: gensoft-mummer-3.23, gensoft-blast+-2.10.0, gensoft-blast-2.2.26, libc6, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-pyani-0.2.10_1.0_amd64.deb Size: 91266554 MD5sum: b1c0aa94937330a3f8f3a63c5affb6fe SHA1: 66649096f348ab1ab7b95eded9c243b93296af38 SHA256: ca403d1643ffbadd7651a2213b61daf689c36f9cc02a3acf5a8e0dffd20ac1e1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: pyani is a Python3 module and script that provides support for calculating average nucleotide identity (ANI) and related measures for whole genome comparisons, and rendering relevant graphical summary output. License: unknown Vendor: Institut Pasteur Package: gensoft-pyani-plus-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 371072 Depends: libgcc-s1, gensoft-sourmash-4.9.4, gensoft-blast+-2.16.0, libstdc++6, libc6, zlib1g, gensoft-mummer-3.23, gensoft-fastani-1.34, gensoft-adm-python-3.11.5 Filename: pool/main/gensoft-pyani-plus-1.0.0_1.0_amd64.deb Size: 122637398 MD5sum: 8ce952f3104cde762c33abfa7a514d48 SHA1: 43419466052e4148be26b582f41e7f54377c9e61 SHA256: 33264669be4fe9d538a988cd9a7bcd7e88349b152d669594970f36153b43f22a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: pyani-plus is a Python package that provides support for calculating average nucleotide identity (ANI) and related measures for whole genome comparisons, and rendering relevant graphical summary output. License: unknown Vendor: Institut Pasteur Package: gensoft-pycoqc-2.5.0.23 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 372234 Depends: gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-pycoqc-2.5.0.23_1.0_amd64.deb Size: 108499124 MD5sum: 126208080216b93a2b64791c69f83ac3 SHA1: 14cfb8ca7668d5f96620114e0ce3e8b2b30daf05 SHA256: 9c200f917c359cb8e4c145760798722ae2f019628f83fbc36a03a86d3661b3ea Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-pycrac-1.5.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 121190 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-pycrac-1.5.0_1.0_amd64.deb Size: 38339478 MD5sum: 1a4f98e95a0680a6856352edeea1e546 SHA1: 3abb710a9002259a82e38d0cc217faf03b46a77e SHA256: fb26aac334a4797130c1e6909507105dfeff980b190a40a5a5657291be48401c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Python software for processing CRAC and CLIP type data. 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License: unknown Vendor: Institut Pasteur Package: gensoft-python-3.9.18 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 251179 Depends: libtinfo5, gensoft-gcc-9.2.0, gensoft-tcl-8.6.10, gensoft-libffi-3.3, libssl1.1, zlib1g, libbz2-1.0, gensoft-gdbm-1.18.1, gensoft-sqlite-3.31.0, gensoft-xz-5.2.5, libncurses5, gensoft-tk-8.6.10, gensoft-xorg-libs-1.1, libreadline8, libc6 Filename: pool/main/gensoft-python-3.9.18_1.0_amd64.deb Size: 86085552 MD5sum: e5b35e9ca4c0510a2d5ca9f8592f24ae SHA1: f977b9ea539cb782a732152e2e626fb5b13c2ab7 SHA256: 5b3a8452086455b98cbc057cad34e63b5f6a19b94d8fc9a02586f566fcdc3171 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Python is a programming language that lets you work quickly and integrate systems more effectively. License: unknown Vendor: Institut Pasteur Package: gensoft-qaf-demux-0.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 666 Depends: libc6 Filename: pool/main/gensoft-qaf-demux-0.1.1_1.0_amd64.deb Size: 233234 MD5sum: acc42f5d20fe43365dc280754a7a0e49 SHA1: 095fa2a132111af6f19e127262146413a732d672 SHA256: f82876e9b1cd82ca43f6ef13ec96956350d61b600b77726f836e00e4cb9a09c3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This program demultiplexes fastq data having "in-line" barcodes, based on a given list of barcodes and a barcode start position. It tries to assign each fastq record to the most likely barcode, taking into account the sequence qualities (interpreted as being sanger-encoded). License: unknown Vendor: Institut Pasteur Package: gensoft-qaf-demux-0.1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 849 Depends: libc6 Filename: pool/main/gensoft-qaf-demux-0.1.2_1.0_amd64.deb Size: 220168 MD5sum: f053f22d24d9b3c4f6914dce2ac4adc8 SHA1: 85599cee2b1f4d86f5d067c3cd6206e7f2fbc185 SHA256: 5f3128a00a93345c38f22394a624efb760d391a89347edf29cb1809c8b567ea7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This program demultiplexes fastq data having "in-line" barcodes, based on a given list of barcodes and a barcode start position. It tries to assign each fastq record to the most likely barcode, taking into account the sequence qualities (interpreted as being sanger-encoded). License: unknown Vendor: Institut Pasteur Package: gensoft-qcat-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 238131 Depends: gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-qcat-1.1.0_1.0_amd64.deb Size: 67465730 MD5sum: af79e09868fa0481fdf35c01aee10c50 SHA1: 562ad4b2199dcfe2df309583671932ed1f3ea882 SHA256: 8694be0ca9adad5fbae4dfcad31742c20a79428278202cfab7cbc552759619a0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files. It accepts basecalled FASTQ files and splits the reads into into separate FASTQ files based on their barcode. Qcat makes the demultiplexing algorithms used in albacore/guppy and EPI2ME available to be used locally with FASTQ files. Currently qcat implements the EPI2ME algorithm. License: unknown Vendor: Institut Pasteur Package: gensoft-qhull-2019.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 9863 Depends: libc6 Filename: pool/main/gensoft-qhull-2019.1_1.0_amd64.deb Size: 3083054 MD5sum: 22358113e0c6e057110b20dde55c29d3 SHA1: 92bbd295be180a6f98ab1408e6f5f1d7a8de28de SHA256: 418b4d801d232d7f7516769ed72a30ab7ccaa6aae90c7e0c5ed050b08bfc987a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. It handles roundoff errors from floating point arithmetic. It computes volumes, surface areas, and approximations to the convex hull. License: unknown Vendor: Institut Pasteur Package: gensoft-qiime2-2020.11.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2251290 Depends: gensoft-singularity-3.7.0 Filename: pool/main/gensoft-qiime2-2020.11.1_1.0_amd64.deb Size: 2287848236 MD5sum: 5385434dba1567545b24120fd70c7f8a SHA1: ff131f46080e12b3002178185ae121f0fc6ca887 SHA256: f85f32f52455f490c9603fc625aaccf5ba2ff2d51afacebb8d1b0230e539a08d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed. License: unknown Vendor: Institut Pasteur Package: gensoft-qiime2-2022.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2871378 Depends: gensoft-apptainer-1.0.0 Filename: pool/main/gensoft-qiime2-2022.2_1.0_amd64.deb Size: 2920382408 MD5sum: 4aa9e3a7bdb988b1a1e1f15083077f5e SHA1: ce01e4ecf34552bc534ccb58f0252b38d77a4e20 SHA256: edac0561974ec0aeccdfb059ce75296af9f834799bab3df0c07a2c9612a89c16 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed. License: unknown Vendor: Institut Pasteur Package: gensoft-qiime2-amplicon-2024.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4052319 Depends: gensoft-apptainer-1.3.2 Filename: pool/main/gensoft-qiime2-amplicon-2024.5_1.0_amd64.deb Size: 4124774416 MD5sum: b5af318c0c2abf4d48705cef90410379 SHA1: 2b43efdcb82713ba3919d0c7862f945474b454f7 SHA256: 43a0bfb5d894bfa3b4ccea6fa4b7354147553230cfb2c99159daafa598fa46ab Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed. License: unknown Vendor: Institut Pasteur Package: gensoft-qiime2-metagenome-2024.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6767087 Depends: gensoft-apptainer-1.3.2 Filename: pool/main/gensoft-qiime2-metagenome-2024.5_1.0_amd64.deb Size: 6888092482 MD5sum: c2c15a6af214ed0f8d31caa541a4d4e2 SHA1: 8951be4e613d4dfecfb553ce3dd6ec73069eb694 SHA256: b37cecf023cde1d3f3203bea88e12ae35c43cc046cdb7f16d5736fee56000005 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed. License: unknown Vendor: Institut Pasteur Package: gensoft-qrupdate-1.1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 460 Depends: gensoft-blas-3.8.0, gensoft-gcc-9.2.0, gensoft-atlas-3.10.2, libc6, gensoft-lapack-3.9.0 Filename: pool/main/gensoft-qrupdate-1.1.2_1.0_amd64.deb Size: 166564 MD5sum: ddaa64532e77c561bb28874098914ccd SHA1: bb58eeedaa8a44c285729427b4e23ec37c036e4c SHA256: 77b692b513c4d06362d40925cc4281c0817b73fe5b2bcad37573997d5a2e0d3f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions. License: unknown Vendor: Institut Pasteur Package: gensoft-qsimscan-1.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 2649 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-qsimscan-1.0_1.0_amd64.deb Size: 838366 MD5sum: 0b656cd4a51fc5a7f1617b75d82d734c SHA1: 77e867266ff219d3644bd063d2672c8e12b97f7c SHA256: 57bb3e232c44312060e91bf830940d6e83c4acc6fad6153f49baadbe381de04c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Quick SIMilarity SCANner is a technology for very fast biosequence similarity search. License: unknown Vendor: Institut Pasteur Package: gensoft-qt-5.12.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 152672 Depends: gensoft-libtiff-4.1.0, gensoft-glib-2.58.3, gensoft-harfbuzz-2.6.4, gensoft-freetype-2.10.1, gensoft-pcre2-10.34, gensoft-libjpeg-turbo-2.0.4, gensoft-libmng-2.0.3, libbz2-1.0, gensoft-xz-5.2.4, gensoft-fontconfig-2.13.91, libc6, gensoft-libpng-1.6.37, gensoft-xcb-util-0.3.9, gensoft-xorg-libs-1.1, gensoft-mtdev-1.1.6, gensoft-expat-2.2.9, gensoft-libxkbcommon-0.8.4, gensoft-gcc-9.2.0, gensoft-icu-65.1, gensoft-dbus-1.13.12, zlib1g, gensoft-alsa-lib-1.2.1.2 Filename: pool/main/gensoft-qt-5.12.1_1.0_amd64.deb Size: 53310200 MD5sum: bc24deb504542c9ad7354bd870cacb79 SHA1: fdcc3c3c665eccbae1b42655fb9a35f4dde715c4 SHA256: 1f40f7d0cdf651c91bbe5c793d1c53492b724adaf05b6b3a73573f21216c8a02 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a C++ toolkit cross-platform application development. License: unknown Vendor: Institut Pasteur Package: gensoft-quake-0.3.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 8625 Depends: libc6, gensoft-adm-python-2.7.17, gensoft-gcc-9.2.0, gensoft-r-3.6.2, zlib1g, gensoft-jellyfish-2.3.0 Filename: pool/main/gensoft-quake-0.3.5_1.0_amd64.deb Size: 7417534 MD5sum: 49bcd37f82557baad195dadd79e025f6 SHA1: d20d85f6b15ba2e4359d4e5114939e6dfb6a444d SHA256: 31e8456cef720ca03fa51b5603e279fa12d3355858169b7a21b92e1257879948 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a package to correct substitution sequencing errors in experiments with deep coverage (e.g. >15X), specifically intended for Illumina sequencing reads. Quake adopts the k-mer error correction framework, first introduced by the EULER genome assembly package. License: unknown Vendor: Institut Pasteur Package: gensoft-qualimap-v2.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 44688 Depends: gensoft-graalvm-ce-java8-20.0.0, gensoft-r-3.6.2 Filename: pool/main/gensoft-qualimap-v2.2.1_1.0_amd64.deb Size: 28357584 MD5sum: 5c0d8f9115a05335de950323f4b6ac77 SHA1: 35d2436f508b51e27386d8bae8f394bdbe45aaca SHA256: d01c98f741c9321931b126a8c4bfc6e66ebb929615d84f1343f1f7a8f11a68ee Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: platform-independent application to facilitate the quality control of alignment sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-qualimap-v2.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 44753 Depends: gensoft-graalvm-ce-java19-22.3.1, gensoft-r-3.6.2 Filename: pool/main/gensoft-qualimap-v2.3_1.0_amd64.deb Size: 28403444 MD5sum: 78c49fefda9cf0d52c4e8d21b09285db SHA1: 05ddcd24d7b3dc57bc9ee7cbd13a3456769a51bd SHA256: efd30e300422081f6cf76acf958d5a8d0a027c192b752bb7da7ff3785423d2f1 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: platform-independent application to facilitate the quality control of alignment sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-quarto-1.5.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 389222 Filename: pool/main/gensoft-quarto-1.5.4_1.0_amd64.deb Size: 118497960 MD5sum: 83709784c56dd21be81868a7a4c9f158 SHA1: 0da25b2d1132b77d135fb2a28be51fac3695fc35 SHA256: 4d8bcc87c8eaf9e2fc565ed99a6dcaeef1efbb1b8afcd2d34894fbadc6b9a79d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Open-source scientific and technical publishing system built on Pandoc. License: unknown Vendor: Institut Pasteur Package: gensoft-quast-5.0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 672225 Depends: gensoft-bwa-0.7.17, gensoft-augustus-3.3.3, gensoft-barrnap-0.9, gensoft-blast+-2.10.0, gensoft-adm-perl-5.30.1, gensoft-r-3.6.2, libc6, libstdc++6, gensoft-graalvm-ce-java8-20.0.0, gensoft-kmc-3.1.1, gensoft-sambamba-0.7.1, gensoft-hmmer-3.3, gensoft-adm-python-2.7.17, gensoft-bedtools-2.29.2, gensoft-glimmerhmm-3.0.4, libgcc-s1, gensoft-minimap2-2.17 Filename: pool/main/gensoft-quast-5.0.2_1.0_amd64.deb Size: 259091324 MD5sum: 19e53cd9e01c7ce34cf705757d61dd62 SHA1: 4ddf71f6b23122b2117fbd575be835d47994b356 SHA256: d42468c27ec4ede83c60a62c7f5df887b19715bab780f991bda413e94af51dee Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Quality Assessment Tool for Genome Assemblies. QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. License: unknown Vendor: Institut Pasteur Package: gensoft-quast-5.2.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 626673 Depends: gensoft-adm-python-2.7.17, gensoft-adm-perl-5.30.1, gensoft-sambamba-0.7.1, gensoft-augustus-3.3.3, gensoft-hmmer-3.3, gensoft-blast+-2.12.0, gensoft-r-3.6.2, gensoft-minimap2-2.26, libc6, gensoft-barrnap-0.9, libstdc++6, gensoft-bedtools-2.29.2, gensoft-kmc-3.2.1, gensoft-bwa-0.7.17, libgcc-s1, gensoft-glimmerhmm-3.0.4, gensoft-graalvm-ce-java19-22.3.1 Filename: pool/main/gensoft-quast-5.2.0_1.0_amd64.deb Size: 254168350 MD5sum: ffc8a80f3dc019a10940a1d7585c2639 SHA1: 749ed50314b3b7409e60c2164e9201a09c8b0fab SHA256: bb3ae5852403b7d0a0c7147e3885ee4bf02394e49719fa8a8ab9c0a230682abc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Quality Assessment Tool for Genome Assemblies. QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. License: unknown Vendor: Institut Pasteur Package: gensoft-quicktree-1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 45 Depends: libc6 Filename: pool/main/gensoft-quicktree-1.1_1.0_amd64.deb Size: 21758 MD5sum: 380d52f15555749c96f1f4fd0c6a23be SHA1: be86bfb42b803c2a9adb9b540a8dbc83e712fa76 SHA256: 645648e8e1941ecba589e047a8be86d5ee9e0ec0436eaec096d435dc6040f34c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A program for the rapid reconstruction of phylogenies by the Neighbor-Joining method License: unknown Vendor: Institut Pasteur Package: gensoft-quicktree-2.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 42 Depends: libc6 Filename: pool/main/gensoft-quicktree-2.5_1.0_amd64.deb Size: 21256 MD5sum: 2f2fd7a023d24a5a09458b8b6fd9c010 SHA1: 656e6e330e7cd5f0210120fd94bcccba0e290584 SHA256: 3312ea1613b05476380e940cd13717b143399592b34cc6695fcfc1f28e2777c5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A program for the rapid reconstruction of phylogenies by the Neighbor-Joining method License: unknown Vendor: Institut Pasteur Package: gensoft-quip-1.1.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5067 Depends: gensoft-libpng-1.6.37, gensoft-gnuplot-5.2.8, gensoft-freetype-2.10.1, gensoft-xorg-libs-1.1, libbz2-1.0, gensoft-libtiff-4.1.0, gensoft-libjpeg-turbo-2.0.4, gensoft-expat-2.2.9, gensoft-fontconfig-2.13.91, zlib1g, libc6, gensoft-libgd-gd-2.2.5, gensoft-xz-5.2.4 Filename: pool/main/gensoft-quip-1.1.8_1.0_amd64.deb Size: 1594506 MD5sum: 61cb86895b4f3f33ac3e6b8e11afa59b SHA1: 707d3d8f56f3c9dad2fca866618fc2d19be5b6f7 SHA256: 0207fb9ec0480d37417b3adc4b926e3871692c470ec4327ba7dec5f67302ddfa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in the FASTQ and SAM/BAM formats, compressing large datasets to as little as 15% of their original size. 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License: unknown Vendor: Institut Pasteur Package: gensoft-rafah-0.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5617278 Depends: gensoft-gcc-9.2.0, gensoft-prodigal-2.6.3.pp1, gensoft-hmmer-3.1b1, libssl1.1, libc6, gensoft-libxml2-2.9.10, gensoft-adm-perl-5.30.1, gensoft-r-4.1.0, gensoft-libiconv-1.16 Filename: pool/main/gensoft-rafah-0.3_2.0_amd64.deb Size: 2472953678 MD5sum: 7c3681356c2dfa3b4b9a4e05fc74b2ff SHA1: 7040e5382d04dcc7b518d663cbdb182133a9381b SHA256: e5e3f48fdf7ad991f8995d0859ef257d9d50a55a2dc3e8809d618df849a05b56 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RaFAH is a tool for performing in silico host predictions for viruses of Archaea and Bacteria. License: unknown Vendor: Institut Pasteur Package: gensoft-ragout-2.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 20993 Depends: gensoft-adm-python-2.7.17, gensoft-sibelia-3.0.7, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-ragout-2.2_1.0_amd64.deb Size: 5838020 MD5sum: 368d0502bacfb5e3405d13d9ccbce076 SHA1: 4231f9ea16acff8bcf67a2caf4165a06449dab9d SHA256: 0b01e003e4d373b3eac9c6d91ec2c6b9087f6a4df4c7c0a7ad54ff529131b257 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. License: unknown Vendor: Institut Pasteur Package: gensoft-rainbowfish-0.7.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 53748 Depends: libbz2-1.0, gensoft-boost-1.54.0, gensoft-gcc-9.2.0, gensoft-stxxl-1.4.1, zlib1g, libc6, libc6-dev, zlib1g-dev, libbz2-dev, gensoft-sdsl-lite-2.1.1 Filename: pool/main/gensoft-rainbowfish-0.7.0_1.0_amd64.deb Size: 16670836 MD5sum: 0afb3a095ec3f3e53563cc5717bab8b9 SHA1: 04f3036276e71e9bc09d6dae1d3bb728cca80f6b SHA256: a10cdacc0c098906445264549603d643a5dd754e274246f92b84863dac0500e4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a succinct colored de Bruijn graph, License: unknown Vendor: Institut Pasteur Package: gensoft-raisd-2.9 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 716 Depends: libc6, gensoft-gsl-2.8 Filename: pool/main/gensoft-raisd-2.9_1.0_amd64.deb Size: 252846 MD5sum: 5cf1a162d1d92be47fac31e1762c2dec SHA1: b40fc0a9368e80c7165758f7a836fcd16e2a6650 SHA256: 09f256186a12051aec2dbc1472f0637fc531d8fba196d2b579be31c564793d63 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: RAiSD (Raised Accuracy in Sweep Detection) is a stand-alone software implementation of the statistic for selective sweep detection License: unknown Vendor: Institut Pasteur Package: gensoft-rala-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 471 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-rala-1.0.0_1.0_amd64.deb Size: 173594 MD5sum: 24e16ded9778552e874be37a24b976b0 SHA1: b7a70b55782d86f2a93cf7350ee044282a0d5bc1 SHA256: 6abc476eb83f2ced3d3d1d2355799c36508215219beb19bb7d952c5354f681ae Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Rala is intended as a standalone layout module to assemble raw reads generated by third generation sequencing. 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Leftover tangles are resolved by laying out the graph in a 2D plane with the help of the force directed placement algorithm, and long edges are removed License: unknown Vendor: Institut Pasteur Package: gensoft-randomize-130926 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 358 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-randomize-130926_1.0_amd64.deb Size: 36164 MD5sum: 2ad41abcac177cd22da776962dd62a6e SHA1: 2626e7b9783648509057b92b8cc61140fe655699 SHA256: 08bbf9922c30cfb5ae649071c95ce2e8ff13d39e46157d85331fb5dadbc6ea53 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: tool to randomize phases of a 3D map in a given resolution zone License: unknown Vendor: Institut Pasteur Package: gensoft-rapidjson-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 8525 Depends: gensoft-gcc-9.2.0 Filename: pool/main/gensoft-rapidjson-1.1.0_1.0_amd64.deb Size: 2256916 MD5sum: 4018271d2068a45726b599b6ae3861ed SHA1: 058bb18f7589839c2f064efdf99209ddba99a3b8 SHA256: 402dc8b79b8c3ec2cd4a7af3b205f59098d7cb4a4d1ac9c13826abc36b739dce Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A fast JSON parser/generator for C++ with both SAX/DOM style API License: unknown Vendor: Institut Pasteur Package: gensoft-rapidnj-2.3.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 272 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-rapidnj-2.3.2_1.0_amd64.deb Size: 114186 MD5sum: d5543748d7bd8c02fbbf0328c6662868 SHA1: d0f248e12356e021c5e211180503617cd567ca3d SHA256: ea97e2a4b358a1171e3412568b00067266c683fbd711601894911580ec2872b3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations. License: unknown Vendor: Institut Pasteur Package: gensoft-rapsearch-2.24 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1558 Depends: gensoft-gcc-9.2.0, gensoft-boost-1.54.0, libc6 Filename: pool/main/gensoft-rapsearch-2.24_1.0_amd64.deb Size: 526606 MD5sum: 2fa76371d3b77bc2f40366bc403db9f2 SHA1: 4ee10964e319e5ff849ee4a46939b1041fde99b9 SHA256: dcc62bb44e11ea80c2309e759ee578e4bc110cce68655745ef39a381354e4d10 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Reduced Alphabet based Protein similarity Search License: unknown Vendor: Institut Pasteur Package: gensoft-rasusa-0.8.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 9237 Depends: libc6 Filename: pool/main/gensoft-rasusa-0.8.0_1.0_amd64.deb Size: 2815026 MD5sum: ba8cf2587a534f6582827e9d415fc006 SHA1: ea38dd659e30269b015762692af045ad9be0edad SHA256: f6d800bd36ad108fb1feab6ca32dc273e7027665c43c12be946ab44f2922d486 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Randomly subsample sequencing reads to a specified coverage License: unknown Vendor: Institut Pasteur Package: gensoft-ratt-1.0.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 18538 Depends: gensoft-xz-5.2.5, gensoft-expat-2.4.1, gensoft-libxml2-2.9.10, gensoft-libiconv-1.16, gensoft-mummer-3.23 Filename: pool/main/gensoft-ratt-1.0.3_1.0_amd64.deb Size: 4867838 MD5sum: 90e669c128ddb03b6ca7364adb0682c4 SHA1: 24b77322e9ed295e6ff64900e8833245268cf589 SHA256: 4cc8b33eecceeb06fe6f8d364236a5bc073d17c7173cd753ef49cbbc38df3b0e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: software to transfer annotation from a reference (annotated) genome to an unannotated query genome. License: unknown Vendor: Institut Pasteur Package: gensoft-raven-1.6.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3953 Depends: gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-raven-1.6.0_1.0_amd64.deb Size: 1371622 MD5sum: 776a26905f6656a288df52965240bb79 SHA1: f5dc7da68c9abb1d962bc7fd3e7b6ce77da6f88a SHA256: bda8d83d653c38addf6bb8928fa470613e4e25e8fb8f9fe4331636e30ff28f05 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: De novo genome assembler for long uncorrected reads License: unknown Vendor: Institut Pasteur Package: gensoft-raven-1.8.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2661 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-raven-1.8.3_1.0_amd64.deb Size: 766414 MD5sum: 31a3ea1af86550f8d8a1e46397563700 SHA1: 7096119f1c02a2d855532270af7c0bf2165bca9d SHA256: a4a01b929773e4eb0737c6088e44c57a9412088019e3be2de1c126d5354110fb Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: De novo genome assembler for long uncorrected reads License: unknown Vendor: Institut Pasteur Package: gensoft-raxml-8.2.12 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4103 Depends: gensoft-adm-perl-5.30.1, zlib1g, gensoft-openmpi-4.0.5, libc6 Filename: pool/main/gensoft-raxml-8.2.12_1.0_amd64.deb Size: 2327434 MD5sum: 70b5704c6a3dde6ef63798df32bda08a SHA1: a50bba1212fa1998daf2aa94b3a4d9c0f8a67349 SHA256: 0200e5ee642998b1671fe48ed959607376c0a171028f6bbfa29716066cbd5a4b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees (SSE3 version without Pthreads) License: unknown Vendor: Institut Pasteur Package: gensoft-raxml-ng-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3957 Depends: gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-raxml-ng-1.0.1_1.0_amd64.deb Size: 1710814 MD5sum: 096b61b89889b1855f2b812eeec17e1e SHA1: d60d40d71e573eb5a592c2aeb0f1d06875ab2d52 SHA256: 209d3179c3a8520d52fd178f23fb6004404ee522241b8014b953905796cf661d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree Pruning and Regrafting (SPR) moves, which allows to quickly navigate to the best-known ML tree. RAxML-NG is a successor of RAxML (Stamatakis 2014) and leverages the highly optimized likelihood computation implemented in libpll (Flouri et al. 2014). License: unknown Vendor: Institut Pasteur Package: gensoft-raxml-ng-1.2.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4131 Depends: zlib1g-dev, libc6, gensoft-gcc-9.2.0, gensoft-openmpi-4.0.5 Filename: pool/main/gensoft-raxml-ng-1.2.2_1.0_amd64.deb Size: 1795920 MD5sum: 320bb65a5b5448f8bf0079eece65283b SHA1: 40cbea0e356fe110a640ceb9fe79267a30347d19 SHA256: c92109969eb9c4f0f5fd50af0986c6be0723f2468bf5d5395023e90e1507ac28 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree Pruning and Regrafting (SPR) moves, which allows to quickly navigate to the best-known ML tree. RAxML-NG is a successor of RAxML (Stamatakis 2014) and leverages the highly optimized likelihood computation implemented in libpll (Flouri et al. 2014). License: unknown Vendor: Institut Pasteur Package: gensoft-ray-2.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 62050 Depends: gensoft-openmpi-4.0.5, libbz2-1.0, zlib1g, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-ray-2.3.1_1.0_amd64.deb Size: 18533894 MD5sum: 721df507982eb305321e7915ef01d7a0 SHA1: e54bcb893af77bd18edcda89ba04738ae680ce5d SHA256: ec022f859e1a182b209afdbe826d651a1c1dd79c1d2b7912a2e43c091a2ae58a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a parallel software that computes de novo genome assemblies with next-generation sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-rbvotree-1.00 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 39 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-rbvotree-1.00_1.0_amd64.deb Size: 10238 MD5sum: 7f54ab3810fd76f4e0cef0083ef14dcb SHA1: 2726fbcf88448901ffef61ea0ca3cf44be56de77 SHA256: 74761dd6b2f2df6dccf0b9f09d1030b9eb08d81f85d04f9b08c835deb8913399 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Report bootstrap values found with consensus program (after bootstrap analysis) on related tree found with phylogeny algorithm without bootstrap analysis License: unknown Vendor: Institut Pasteur Package: gensoft-rdkit-2021-03-4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 275073 Depends: gensoft-cairo-1.16.0, gensoft-maeparser-1.2.4, libgcc-s1, zlib1g, gensoft-expat-2.2.9, gensoft-pixman-0.38.4, gensoft-gcc-9.2.0, gensoft-libpng-1.6.37, gensoft-rdkit-2021-03-4, gensoft-freetype-2.10.1, gensoft-coordgenlibs-2.0.3, gensoft-adm-python-3.8.1, gensoft-zstd-1.4.4, gensoft-fontconfig-2.13.91, gensoft-openbabel-3.1.1, gensoft-xorg-libs-1.1, libcrypt1, libc6, libbz2-1.0, gensoft-boost-1.72.0, gensoft-xz-5.2.4 Filename: pool/main/gensoft-rdkit-2021-03-4_1.0_amd64.deb Size: 83462554 MD5sum: 165061d83cfbf1a75cfa3fc5ac2e135c SHA1: 9a5051c34ee01f1da200548a366c422d0741367e SHA256: 13de4cc66d098cb8922f3a071ca35f30595052b35f801a36df0b98f9bef29030 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RDKit is a collection of cheminformatics and machine-learning software written in C++ and Python. License: unknown Vendor: Institut Pasteur Package: gensoft-rdp-classifier-2.12 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 539852 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-rdp-classifier-2.12_2.0_amd64.deb Size: 154730486 MD5sum: 7150e9672ef8f0a25928055964c135e3 SHA1: 11e3a0c39eafedda704c2d0ee702aa89dc1e1e72 SHA256: ab0e2bee68a79112573f81e93aa698f119c2223e5f21066b1fa7a988e371e6e7 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. License: unknown Vendor: Institut Pasteur Package: gensoft-rdp-classifier-2.13 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 563602 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-rdp-classifier-2.13_2.0_amd64.deb Size: 162091574 MD5sum: b473a77901595c8a03da68a2c15fd255 SHA1: 4397f506d84195f6a22e87506d0d1030e1453c98 SHA256: cc972199fb6c3c337a7809ffca349b0557be7748e9e3d66be2947a2a8b2ff816 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. License: unknown Vendor: Institut Pasteur Package: gensoft-rdptools-2.0.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 571008 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-rdptools-2.0.3_1.0_amd64.deb Size: 166902870 MD5sum: 816a4b1c2f1119b9fc2c581c107b27d0 SHA1: 1ef87cc08f95e771ca0ef43dd48d9cf2e4199757 SHA256: a23b438cc0fc52b2b3280d66bd275edda10518769fe6de72790590a602cdbfda Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RDP provides quality-controlled, aligned and annotated Bacterial and Archaeal 16S rRNA sequences, and Fungal 28S rRNA sequences, and a suite of analysis tools (Classifier, Clustering, SequenceMatch, ProbeMatch, InitialProcessing, FrameBot, ReadSeq) to the scientific community. License: unknown Vendor: Institut Pasteur Package: gensoft-realphy-1.12 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 827 Depends: gensoft-raxml-8.2.12, gensoft-bowtie2-2.1.0, gensoft-phylip-3.67, gensoft-graalvm-ce-java11-20.0.0, gensoft-tree-puzzle-5.2, gensoft-phyml-3.3.20190909, gensoft-r-4.2.1 Filename: pool/main/gensoft-realphy-1.12_1.0_amd64.deb Size: 810022 MD5sum: e0396d575e25f81abeced0030878a14f SHA1: cdf8dac222c1ba3b249d752f655290cb8a5a2d38 SHA256: 38ba07d69651851c27e0927666931e3bdefe70df261c0eb61d59797b299e7f91 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Reference sequence Alignment based Phylogeny builder is a free pipeline that can infer phylogenetic trees from whole genome sequence data License: unknown Vendor: Institut Pasteur Package: gensoft-reaper-15-065 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 436 Depends: libc6, zlib1g Filename: pool/main/gensoft-reaper-15-065_1.0_amd64.deb Size: 166796 MD5sum: 0b829cbb93df1ad3664952cdfaaaa7a4 SHA1: b0773b4d4145f8bca0ebd3668938a169ae1920e8 SHA256: fc83987380bfbb79a4291aa05404999a49a3e85ce96f8e84815700a04c607465 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Reaper is a program for demultiplexing, trimming and filtering short read sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-reapr-1.0.18 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 13812 Depends: zlib1g, gensoft-gcc-9.2.0, libncurses5, gensoft-adm-perl-5.30.1, libc6, libtinfo5, gensoft-r-3.6.2 Filename: pool/main/gensoft-reapr-1.0.18_1.0_amd64.deb Size: 4884144 MD5sum: 3e35d381397b652d3e385a4860bb453d SHA1: c12fa6c701a10fb4b8fa48cca5346d99e4bc2a3d SHA256: 2ed4d0ba94396ce22a297ae257b92e24b1d27dea77f3dd2be7830c2c0358efb4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Recognising Errors in Assemblies using Paired Reads. A tool that evaluates the accuracy of a genome assembly using mapped paired end reads. License: unknown Vendor: Institut Pasteur Package: gensoft-recon-1.08 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 165 Depends: libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-recon-1.08_1.0_amd64.deb Size: 59840 MD5sum: 91012e7b343fcdc679e6346840f955f1 SHA1: 0f3b82ae233d6bdd664e518aec46fbd95eedbc28 SHA256: 002ec5e717b85d48ec40e3cdb20a0ca325f0c29981a1f78829868dbc10647ad0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a package for automated de novo identification of repeat families from genomic sequences License: unknown Vendor: Institut Pasteur Package: gensoft-recycler-0.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 117746 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-recycler-0.7_1.0_amd64.deb Size: 34576944 MD5sum: 841424276c0d901b0cb53992cfb39ff7 SHA1: 6d89636a963fb4c528faf9b930a34e168da5ca3b SHA256: b57323cb55c75bd930f04ee9955bb42f73a1f36507318861b3a45363077ca3f0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Recycler is a tool designed for extracting circular sequences from de novo assembly graphs. It can be applied on isolate as well as metagenome and plasmidome data. The circular sequences it outputs may be plasmids, phages, etc. Recycler uses only features of the assembly graph (contig overlaps, lengths, and coverage level information) and alignments of paired-end reads to the contigs in the graph in order to identify these sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-referenceseeker-1.7.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 95972 Depends: gensoft-mummer-4.0.0rc1, gensoft-adm-python-3.8.1, gensoft-mash-2.2, libc6 Filename: pool/main/gensoft-referenceseeker-1.7.1_2.0_amd64.deb Size: 27910876 MD5sum: 6b2e361c9f201de40674f3ba65b94ffb SHA1: b3363826e5110bbc6ed070acd94c45a4b5f41a03 SHA256: 2c6dd525f3e934274efed49034b5912d29dc6419cb1365f233f4e91c1cc337f4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Rapid determination of appropriate reference genomes License: unknown Vendor: Institut Pasteur Package: gensoft-referenceseeker-1.7.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 95975 Depends: libc6, gensoft-mummer-4.0.0rc1, gensoft-adm-python-3.8.1, gensoft-mash-2.2 Filename: pool/main/gensoft-referenceseeker-1.7.3_2.0_amd64.deb Size: 27911484 MD5sum: 6c42edd33476eca44a2cd40ac8844105 SHA1: b189c08458ac1ddfa006e02bc398f63535acea56 SHA256: c6bf7c0cba1f22ed73f84f30a9ec598b8c7a60e74393d292b2c858420de58982 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Rapid determination of appropriate reference genomes License: unknown Vendor: Institut Pasteur Package: gensoft-relion-4.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2157193 Depends: gensoft-fltk-1.3.5, gensoft-topaz-0.2.4, gensoft-xpdf-4.03, gensoft-expat-2.4.1, gensoft-resmap-1.1.4, gensoft-libpng-1.6.37, gensoft-fontconfig-2.13.91, gensoft-ghostscript-9.50, libc6, gensoft-cuda-11.7, gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0, gensoft-xz-5.2.5, gensoft-ctffind-4.1.14, gensoft-freetype-2.10.1, gensoft-libjpeg-turbo-2.0.4, libstdc++6, libgcc-s1, gensoft-gctf-1.06, gensoft-libtiff-4.1.0, libbz2-1.0, gensoft-fftw-3.3.8, zlib1g, gensoft-motioncor2-1.5.0, gensoft-xorg-libs-1.1 Filename: pool/main/gensoft-relion-4.0.0_1.0_amd64.deb Size: 999137748 MD5sum: cea1c3774eff063a0679078ad377b1dd SHA1: 95d729e8840957f0b65a52faba364ab77d568a60 SHA256: 0f7a580dc77eda726f62b0ff115a31d7549346ca812613bea39fab1da645f6f5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. It is developed in the research group of Sjors Scheres at the MRC Laboratory of Molecular Biology. License: unknown Vendor: Institut Pasteur Package: gensoft-relion-5.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 7956778 Depends: gensoft-fftw-3.3.8, gensoft-xz-5.2.5, gensoft-ghostscript-9.50, libstdc++6, gensoft-fltk-1.3.5, gensoft-freetype-2.10.1, gensoft-xorg-libs-1.1, gensoft-gctf-1.06, libc6, gensoft-fontconfig-2.13.91, libgcc-s1, gensoft-cuda-11.7, gensoft-resmap-1.1.4, gensoft-adm-python-3.10.7, gensoft-xpdf-4.03, gensoft-topaz-0.2.4, gensoft-motioncor2-1.5.0, gensoft-libtiff-4.1.0, gensoft-libpng-1.6.37, libbz2-1.0, gensoft-openmpi-4.0.5, gensoft-expat-2.4.1, gensoft-libjpeg-turbo-2.0.4, gensoft-gcc-9.2.0, zlib1g, gensoft-ctffind-4.1.14 Filename: pool/main/gensoft-relion-5.0.0_1.0_amd64.deb Size: 3904627436 MD5sum: 9be26c0afa3ba267560bf841355ff672 SHA1: 935cb20f272589d450636ca43ac0151cc2019be4 SHA256: 485cee6ffc13353e281784c44f3f189ebf937ae7434127f564ca32c4f5c3e1b8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. It is developed in the research group of Sjors Scheres at the MRC Laboratory of Molecular Biology. License: unknown Vendor: Institut Pasteur Package: gensoft-remove-duplicates-from-sorted-fastq-0.1.1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5608 Depends: libgmp10, libc6 Filename: pool/main/gensoft-remove-duplicates-from-sorted-fastq-0.1.1.0_1.0_amd64.deb Size: 1943714 MD5sum: 655f44d3cae0ce1ab289f4149bb2d9c9 SHA1: 64d6bb76749dd97526c12f6f5ca244a809dc73f8 SHA256: bb1cb57c357ab6b37f5326fdf64983ea230b45c08e6ee96c6866c9726e0274f4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: merges successive FASTQ records with the same sequence, retains the best quality at each position, and assigns the name of the first record to the result. License: unknown Vendor: Institut Pasteur Package: gensoft-repast-hpc-2.3.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 16129 Depends: gensoft-gcc-9.2.0, gensoft-hdf5-1.10.6, libc6, gensoft-netcdf-4.7.3, gensoft-curl-7.68.0, gensoft-boost-1.72.0, gensoft-netcdf-cxx-4.2, gensoft-openmpi-4.0.5, zlib1g Filename: pool/main/gensoft-repast-hpc-2.3.0_1.0_amd64.deb Size: 2976618 MD5sum: 7e7ba4634ee3eb784f44b66a8aae81a0 SHA1: cdafa0ccfe1a34af627aed49585c902746e749c7 SHA256: 8ad03b0bfbf65430627f6fea6426c965c942f9a1558e95ee81849f6fdbd94c75 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a next generation agent-based modeling system intended for large-scale distributed computing platforms. It implements the core Repast Simphony concepts (e.g. contexts and projections), modifying them to work in a parallel distributed environment. License: unknown Vendor: Institut Pasteur Package: gensoft-repeatanalysistools-88dc95a Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 511534 Depends: libstdc++6, gensoft-ccs-6.3.0, gensoft-adm-python-3.8.1, libc6, gensoft-minimap2-2.17, gensoft-parallel-20200222, gensoft-samtools-1.13, libgcc-s1, gensoft-lima-2.5.0, gensoft-pbmm2-1.7.0, zlib1g Filename: pool/main/gensoft-repeatanalysistools-88dc95a_1.0_amd64.deb Size: 160367888 MD5sum: a55b0f303ed66872ea7ea1a9ab954676 SHA1: cd83e3e7ea6d4c9e931682d50cfd0ec6193ef739 SHA256: c9e7d07ec497d184f574c05c71ba3baa3f7c99282a0945e8fb2263335f27d992 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This tool gets a CRISPR profile by identifying the presence of known spacers and direct repeats (DRs) in a given sequence based on a catalogue. License: unknown Vendor: Institut Pasteur Package: gensoft-repeatmasker-4.1.2-p1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 4975043 Depends: gensoft-trf-4.09, gensoft-twl-ninja-0.95-cluster-only, libstdc++6, gensoft-ltr-retriever-2.9.0, gensoft-phrap-1.090518, gensoft-adm-python-3.8.1, gensoft-ucsc-tools-v390, gensoft-hmmer-3.3.2, gensoft-recon-1.08, gensoft-rmblastn-2.11.0, zlib1g, gensoft-adm-perl-5.30.1, gensoft-repeatscout-1.0.6, libc6, libgcc-s1, gensoft-repeatmasker-4.1.2-p1, gensoft-mafft-7.467 Filename: pool/main/gensoft-repeatmasker-4.1.2-p1_1.0_amd64.deb Size: 907491990 MD5sum: 5ea35da8556109729e259722fdd926b5 SHA1: cf5140041443e5d9b042c260a1311852f6c714f7 SHA256: 4021a8af3d3f43764312ffd38a11218da5f8c77205ae48a9bc3bf6bbb915b179 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default replaced by Ns). Currently over 56% of human genomic sequence is identified and masked by the program. Sequence comparisons in RepeatMasker are performed by one of several popular search engines including nhmmer, cross_match, ABBlast/WUBlast, RMBlast and Decypher. RepeatMasker makes use of curated libraries of repeats and currently supports Dfam ( profile HMM library derived from Repbase sequences ) and Repbase, a service of the Genetic Information Research Institute. The program is installed with a full version of the repeat library DFAM Library Version = Dfam_2.0, RMLibrary Version = 20150807, Repbase Version = 20150807. RepeatMasker is intalled with crossmatch, rmblast, hmmer support for search engine (rmblast is the default) License: unknown Vendor: Institut Pasteur Package: gensoft-repeatmodeler-2.0.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3911 Depends: gensoft-cd-hit-4.8.1, gensoft-twl-ninja-0.95-cluster-only, gensoft-trf-4.09, libc6, gensoft-ltr-retriever-2.9.0, gensoft-recon-1.08, gensoft-repeatscout-1.0.6, gensoft-mafft-7.467, gensoft-repeatmasker-4.1.0, gensoft-adm-perl-5.30.1, gensoft-genometools-1.5.9, gensoft-rmblastn-2.10.0 Filename: pool/main/gensoft-repeatmodeler-2.0.1_2.0_amd64.deb Size: 958904 MD5sum: 79d1a1106f4ff67102d73ea2e25683a8 SHA1: 305d8ca51d72fb080e208139d881e76337f143b1 SHA256: b6b480e786016edb54b5c0ffb9124dbf64f02d4d64ed6ed9263af75afe75f409 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a de novo transposable element (TE) family identification and modeling package. License: unknown Vendor: Institut Pasteur Package: gensoft-repeatmodeler-2.0.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3170 Depends: gensoft-ltr-retriever-2.9.0, libc6, gensoft-genometools-1.5.9, gensoft-cd-hit-4.8.1, gensoft-mafft-7.467, gensoft-recon-1.08, gensoft-repeatscout-1.0.6, gensoft-rmblastn-2.11.0, gensoft-ucsc-tools-v390, gensoft-trf-4.09, gensoft-adm-perl-5.30.1, gensoft-twl-ninja-0.95-cluster-only, gensoft-repeatmasker-4.1.2-p1 Filename: pool/main/gensoft-repeatmodeler-2.0.3_2.0_amd64.deb Size: 809848 MD5sum: e755a337e0e8daee500ac201320aaf11 SHA1: 94e14a967372dad78b8c72b3c8ae7c551618de17 SHA256: 314a92e99adf35365a00e9d571768aa0ff5f580a17884a818a2ee56791be0e31 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a de novo transposable element (TE) family identification and modeling package. License: unknown Vendor: Institut Pasteur Package: gensoft-repeatoire-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1504 Depends: gensoft-boost-1.72.0, gensoft-libmems-1.6.0, gensoft-zstd-1.4.4, gensoft-libgenome-1.3.1, gensoft-gcc-9.2.0, gensoft-libmuscle-1.0.0, gensoft-xz-5.2.4 Filename: pool/main/gensoft-repeatoire-1.0_1.0_amd64.deb Size: 896848 MD5sum: 2155ebb36bbfd04648628bb9f9bf29d5 SHA1: e4415088b9c348fcebaf338c5ed8962aee1d4440 SHA256: 5f25e65ce722a15c3c737c3c0977443dc00d05f833033bc8c9cd7c0aeb13cf09 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Perform ab initio method to detect multiple repeats in genomes License: unknown Vendor: Institut Pasteur Package: gensoft-repeatscout-1.0.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 118 Depends: gensoft-trf-4.09, gensoft-rmblastn-2.10.0, gensoft-adm-perl-5.30.1, libc6 Filename: pool/main/gensoft-repeatscout-1.0.6_1.0_amd64.deb Size: 49042 MD5sum: 65372d38b6ef52098189147668ae0667 SHA1: ecd9d0e6f581fa3d53e77403c32f6974d0225d3c SHA256: 60e972e9038c262cfbbe105292329ff13f25df83ad726f0e9dbfb3c1149f5781 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool to discover repetitive substrings in DNA. License: unknown Vendor: Institut Pasteur Package: gensoft-reportree-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 297594 Depends: libgcc-s1, gensoft-treecluster-1.0.3, zlib1g, libgomp1, libstdc++6, gensoft-cgmlst-dists-0.4.0, gensoft-adm-python-3.8.1, gensoft-vcf2mst-a5d5c9d, libc6 Filename: pool/main/gensoft-reportree-1.0.0_1.0_amd64.deb Size: 95095948 MD5sum: c2abb9d98bda62574f7cac2655b8ebf8 SHA1: 099e2c6fb767d9c4edca8c27614a4461dbcda40f SHA256: 5176a3275836ab8d8dc031cad0c68591423344678f9e296d07f43c2a97bb7be4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data License: unknown Vendor: Institut Pasteur Package: gensoft-reportree-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 294601 Depends: libstdc++6, gensoft-treecluster-1.0.3, zlib1g, libgcc-s1, gensoft-vcf2mst-a5d5c9d, libgomp1, gensoft-adm-python-3.8.1, libc6, gensoft-cgmlst-dists-0.4.0 Filename: pool/main/gensoft-reportree-1.0.1_1.0_amd64.deb Size: 93924612 MD5sum: e86a6cefe6ff43e1d58bd363c3fe79cd SHA1: 980c6d53b2bb51db26b769d5dbe19c0ef3d7e03d SHA256: dad202c33c6bc01627451b76a28cf088a2650da882b6510d7163f1a8fad61f41 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data License: unknown Vendor: Institut Pasteur Package: gensoft-reportree-2.0.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 454427 Depends: gensoft-vcf2mst-a5d5c9d, gensoft-cgmlst-dists-0.4.0, gensoft-treecluster-1.0.3, libc6, gensoft-adm-python-3.8.1, libstdc++6, libgomp1, zlib1g, libgcc-s1 Filename: pool/main/gensoft-reportree-2.0.2_2.0_amd64.deb Size: 145360924 MD5sum: 5793e37d946d0624a1fb74ec16aa4c96 SHA1: 8eec0c9501a6b80a94e3c0caee5af7299c9006cf SHA256: e269a97d88e2f63e0351dbf9391ca36f11ccf1afe02046a589f7f243073c738f Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data License: unknown Vendor: Institut Pasteur Package: gensoft-reportree-2.3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 454437 Depends: libgcc-s1, gensoft-treecluster-1.0.3, libgomp1, gensoft-cgmlst-dists-0.4.0, zlib1g, libc6, gensoft-vcf2mst-a5d5c9d, gensoft-adm-python-3.8.1, libstdc++6 Filename: pool/main/gensoft-reportree-2.3.0_1.0_amd64.deb Size: 145359628 MD5sum: 6571b00f7f9ed2a35f72128c6ee5a59c SHA1: 4513d916f756bde6e54bd78b676fe4934dd776fd SHA256: 1866b475d55d518efe655991a36af69fcffcb5adae9e105b8676a170f2aaefe7 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data License: unknown Vendor: Institut Pasteur Package: gensoft-req-1.3 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4987 Depends: libc6 Filename: pool/main/gensoft-req-1.3_2.0_amd64.deb Size: 1677604 MD5sum: 5ba37726ce7239638746fa8eb5f40174 SHA1: 7ed3239242aaa6fdb854104f8095b81e98eb8ce2 SHA256: 4b5f6f53dec081ded9d7fdadc88ebe72df0a7fb664462c5d453958c25e7550f5 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: estimate the rate of elementary quartets (REQ) for each internal branch of a phylogenetic tree from a distance matrix License: unknown Vendor: Institut Pasteur Package: gensoft-req-2.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12019 Depends: libc6 Filename: pool/main/gensoft-req-2.1_1.0_amd64.deb Size: 3889768 MD5sum: 8092985de3de06312da79c35207de66f SHA1: 8c5faede49c775bc4b507205608828b7c371a92d SHA256: bf7c6c0fa0f542564bbb77950dfa0264bc5a82c449dcdc066ef4f2f22f9bd8fe Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: estimate the rate of elementary quartets (REQ) for each internal branch of a phylogenetic tree from a distance matrix License: unknown Vendor: Institut Pasteur Package: gensoft-reseek-1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 903 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-reseek-1.1_1.0_amd64.deb Size: 419398 MD5sum: ec40793f0718c8b92ba57841a71ead80 SHA1: 5197d5084284299baa9b8276060657778f0bca89 SHA256: 20b5dc909504ebafabed4c56d72fede650864e8bba579eb58c12cf4fd0dcb972 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Protein structure alignment and search algorithm License: unknown Vendor: Institut Pasteur Package: gensoft-resfinder-3.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 228325 Depends: gensoft-kma-1.2.22, libc6, gensoft-adm-python-3.8.1, gensoft-blast+-2.10.0 Filename: pool/main/gensoft-resfinder-3.2_1.0_amd64.deb Size: 61161078 MD5sum: 4e464bd9be21adf5ff8ce0ef0e1c3a3b SHA1: 4bd8a2e8c1549fd4fffb51ab643708a89867ca4d SHA256: 7bf487dec0193130dc8b6c7a0ea0c33cb674f78fac85c0fa8e2c0222aa62141c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Calculates antibiotic resistance genes based on a BLAST alignment of the input sequence file and the specified allele set. If possible the ST will be given License: unknown Vendor: Institut Pasteur Package: gensoft-resfinder-4.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 204698 Depends: gensoft-adm-python-3.8.1, gensoft-blast+-2.10.0, libgcc-s1, gensoft-kma-1.3.4, libc6 Filename: pool/main/gensoft-resfinder-4.0.1_1.0_amd64.deb Size: 50125784 MD5sum: 1f1360bd686a1e6ff775e6f6082a574d SHA1: d0f5c641dd847c601ea5818deb2b9081c83e9564 SHA256: 8018dd15785cb4922f3ac046c13389958b8fd3a336bf5c5f62f71009e06d16f1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Calculates antibiotic resistance genes based on a BLAST alignment of the input sequence file and the specified allele set. If possible the ST will be given License: unknown Vendor: Institut Pasteur Package: gensoft-resfinder-4.3.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 304320 Depends: gensoft-adm-python-3.8.1, libgcc-s1, gensoft-blast+-2.14.1, libc6, gensoft-kma-1.4.14 Filename: pool/main/gensoft-resfinder-4.3.3_1.0_amd64.deb Size: 62197756 MD5sum: dea5380ab51dcf1dda2df55266e5f928 SHA1: 28410b9c8c461e2ec5fba9a30be0d77f63f144fb SHA256: 3b5baeab5f131ed8a2b35e1b89ace2ea75eba4ec70a6387572c9088b41fa0bce Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Calculates antibiotic resistance genes based on a BLAST alignment of the input sequence file and the specified allele set. If possible the ST will be given License: unknown Vendor: Institut Pasteur Package: gensoft-resmap-1.1.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 219862 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-resmap-1.1.4_1.0_amd64.deb Size: 63303114 MD5sum: 3ad893880ea30bf4ccfdc6c9da2c8da7 SHA1: 4557316b55d1a36e27a56f5508ebf8d74d40c530 SHA256: d2ceda30dadc0baecd3b635b5e98a59f5ee07b6dd513a8175c438a1481205ace Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a software package for computing the local resolution of 3D density maps studied in structural biology, primarily electron cryo-microscopy (cryo-EM). License: unknown Vendor: Institut Pasteur Package: gensoft-rfmix-1.5.4 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 307 Depends: libc6, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-rfmix-1.5.4_1.0_amd64.deb Size: 192668 MD5sum: 0d8f9b9ec818ef42e7fd26420c1f1293 SHA1: 7c6e8793da01b0768443325b9ee88c099553a38f SHA256: b8571d36166daadc61138aa244c9fa6c9b8f511e12c230b3d03f1de8430cf268 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A discriminative method for local ancestry inference License: unknown Vendor: Institut Pasteur Package: gensoft-rfmix-2.03 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 678 Depends: libc6, gensoft-gcc-9.2.0, gensoft-samtools-1.21 Filename: pool/main/gensoft-rfmix-2.03_1.0_amd64.deb Size: 271572 MD5sum: 4c16c6570c58ea0fe3eeea4f696eb248 SHA1: 6d621a32d01a5cab968a5907af0f30fb9d70ad0d SHA256: c1863efc5dffeee937642cb6e30dc833b7dccef6ac3b129ed2d38e94119ff79c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A discriminative method for local ancestry inference License: unknown Vendor: Institut Pasteur Package: gensoft-rfplasmid-1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1502861 Depends: gensoft-gcc-9.2.0, libc6, libstdc++6, gensoft-checkm-1.1.3, libgcc-s1, zlib1g, gensoft-adm-python-3.8.1, gensoft-jellyfish-2.3.0, gensoft-r-4.4.0, gensoft-diamond-2.1.9 Filename: pool/main/gensoft-rfplasmid-1.0_1.0_amd64.deb Size: 764332146 MD5sum: 52a47187735d2bb7259bb4fbda844ebd SHA1: 87e3d4544bc629796889f3ed65dcdf06c4b00d2c SHA256: 949964546ea5a792b0226c81d40af52c1abe9be0dc31ab17a2073c00ba1064eb Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers License: unknown Vendor: Institut Pasteur Package: gensoft-rgi-6.0.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 367753 Depends: gensoft-jellyfish-2.3.0, libc6, gensoft-bamtools-2.5.1, gensoft-kma-1.4.14, gensoft-prodigal-2.6.3, gensoft-bwa-0.7.17, libgcc-s1, libstdc++6, gensoft-diamond-0.8.36, gensoft-blast+-2.14.1, gensoft-adm-python-3.8.1, gensoft-bowtie2-2.3.5.1, gensoft-samtools-1.9, gensoft-bedtools-2.29.2, zlib1g Filename: pool/main/gensoft-rgi-6.0.3_1.0_amd64.deb Size: 111779124 MD5sum: 9472074e32747ab3c083b6208f74adcf SHA1: 013f07f60c727b03b3ac2006785831d155a5b1c5 SHA256: 1fe5ffe755dd439e769f94216dcfca3102f6d3afdc872bd4475e1a1598ad870c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models. License: unknown Vendor: Institut Pasteur Package: gensoft-rgt-0.13.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 495502 Depends: gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-rgt-0.13.1_1.0_amd64.deb Size: 168707774 MD5sum: bbb78a477a755ece0d70d0c19893c92a SHA1: 754192ffafc7b20172a659153b1604ff77f789a8 SHA256: cc42809dd8b84ad6b1c0e564a51fb0f30dd9edf9df901991ad090a840fe3d07a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RGT is an open source Python 3.6+ library for analysis of regulatory genomics. RGT is programmed in an oriented object fashion and its core classes provide functionality for handling regulatory genomics data. License: unknown Vendor: Institut Pasteur Package: gensoft-ribodetector-0.3.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3828474 Depends: libc6, zlib1g, gensoft-adm-python-3.9.16, libgomp1, libstdc++6, libgcc-s1 Filename: pool/main/gensoft-ribodetector-0.3.1_1.0_amd64.deb Size: 2011377590 MD5sum: 274c3e7be94ca23343ea8c275ca20db5 SHA1: b82a6635ee533843f021b039d4e7f75f8ef57960 SHA256: 1a7d1adf3f3e771bdda200ab8e2cbf15c3d55d0c43d35068116fd90744cef842 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: accurately yet rapidly detect and remove rRNA sequences from metagenomeic, metatranscriptomic, and ncRNA sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-rmblastn-2.10.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 187773 Depends: gensoft-pcre-8.43, gensoft-gcc-9.2.0, zlib1g, libbz2-1.0, libc6 Filename: pool/main/gensoft-rmblastn-2.10.0_2.0_amd64.deb Size: 71111942 MD5sum: 76b7b2da6979ec22e06e1546bcc395fd SHA1: a2675779b8d9c6786ad99292473d3a8427783176 SHA256: 2a7fbd2fdc419e412e711c08f03989a2fb197c99a3ce248fa2fbb690a1427b77 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program rmblastn for use with RepeatMasker and RepeatModeler. License: unknown Vendor: Institut Pasteur Package: gensoft-rmblastn-2.11.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 192650 Depends: gensoft-pcre-8.43, zlib1g, libc6, gensoft-gcc-9.2.0, libbz2-1.0 Filename: pool/main/gensoft-rmblastn-2.11.0_2.0_amd64.deb Size: 73183150 MD5sum: 65705a3f7bdf32242a598c71106233b3 SHA1: 5380b0dbbc6ae0780d9bed7fc54f9dc6b0f7a121 SHA256: 169742e3db9d9f8d21e271aa5ca65e6a7154cce1216cb8ab90a3bd6a730426d7 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program rmblastn for use with RepeatMasker and RepeatModeler. License: unknown Vendor: Institut Pasteur Package: gensoft-rmblastn-2.14.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 206170 Depends: libc6, gensoft-pcre-8.43, libbz2-1.0, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-rmblastn-2.14.1_1.0_amd64.deb Size: 79026590 MD5sum: 590ff2fc08dea9e00ecc2fb373aa8bd0 SHA1: 214127aa786a0f69c00e6f1e943eca3d71a7423a SHA256: 56a0c48c75c5365311102c0bb57e717e192e6dc347ba6233fc8af9c12b95a4c9 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program rmblastn for use with RepeatMasker and RepeatModeler. License: unknown Vendor: Institut Pasteur Package: gensoft-rmsfinder-1.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 325456 Depends: libgcc-s1, gensoft-hmmer-3.4, zlib1g, gensoft-blast+-2.14.1, gensoft-adm-python-3.8.1, libc6, libstdc++6 Filename: pool/main/gensoft-rmsfinder-1.0.0_1.0_amd64.deb Size: 75308770 MD5sum: 2a7477e3741e35a22012eb42eabe550e SHA1: 6b652025aedd2b1b0e9acb14fe812c67a9fed3f9 SHA256: fc7c27a41b7e454404df662aaea3d75c4e9e261e590663a75a0d45eb82198c5b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A tool for finding Type II restriction-modification systems (RMS) in bacterial genomes and predicting their target sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-rna-bloom-2.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2882 Depends: gensoft-ntcard-1.2.2, gensoft-minimap2-2.28, gensoft-graalvm-ce-java19-22.3.1, gensoft-racon-1.5.0 Filename: pool/main/gensoft-rna-bloom-2.0.1_1.0_amd64.deb Size: 2727340 MD5sum: c057bb6654e648f3f4191462fa15c85d SHA1: 29dc7bd2d4d0fb77c1db75cba8934d0e11c3394c SHA256: 4b71a75bb65cd3fce25defae6c794f1d0454a3ff2a454c4ccc6fc58fcd90ec8c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: reference-free transcriptome assembly for short and long reads License: unknown Vendor: Institut Pasteur Package: gensoft-rna-seqc-1.1.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 44935 Depends: gensoft-java-1.7.0, gensoft-bwa-0.7.17, gensoft-picard-tools-2.22.0 Filename: pool/main/gensoft-rna-seqc-1.1.8_1.0_amd64.deb Size: 39522714 MD5sum: 85f5b61aa890903335f0c45b006a0592 SHA1: 6088c85cdba128470277e245931cb27c64e19da5 SHA256: a55d855292f0b122f985df90312bb9489da28c31d5122d770859af5b8f49a7ee Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RNA-SeQC is a java program which computes a series of quality control metrics for RNA-seq data. The input can be one or more BAM files. The output consists of HTML reports and tab delimited files of metrics data. This program can be valuable for comparing sequencing quality across different samples or experiments to evaluate different experimental parameters. It can also be run on individual samples as a means of quality control before continuing with downstream analysis. License: unknown Vendor: Institut Pasteur Package: gensoft-rnastructure-6.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 131564 Depends: gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17, gensoft-cuda-11.1, gensoft-graalvm-ce-java11-20.0.0, libc6 Filename: pool/main/gensoft-rnastructure-6.2_2.0_amd64.deb Size: 49433698 MD5sum: 48e8f3ffd8e15aa3ee81653ce1f92dbe SHA1: e95efd895151c3d3685ff416d9a42693f0987a8c SHA256: f52a06a90d79c07d55fc07d638d1482ab8236a3c882a520ca97dba493b85a257 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis. It includes algorithms for secondary structure prediction, including facility to predict base pairing probabilities. It also can be used to predict bimolecular structures and can predict the equilibrium binding affinity of an oligonucleotide to a structured RNA target. This is useful for siRNA design. It can also predict secondary structures common to two, unaligned sequences, which is much more accurate than single sequence secondary structure prediction. Finally, RNAstructure can take a number of different types of experiment mapping data to constrain or restrain structure prediction. These include chemical mapping, enzymatic mapping, NMR, and SHAPE data. License: unknown Vendor: Institut Pasteur Package: gensoft-rnastructure-6.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 130771 Depends: gensoft-graalvm-ce-java8-20.0.0, gensoft-gcc-9.2.0, gensoft-cuda-11.1, gensoft-adm-python-2.7.17, libc6 Filename: pool/main/gensoft-rnastructure-6.3_1.0_amd64.deb Size: 49461544 MD5sum: 4c41b646e932a0b15b43de6c58fcf9ea SHA1: 5a94f7e1b21ae9d3df5138d6ad9a2fef341ab78b SHA256: 22fd9b43435c8473913f98eb94a1587de4e1dc420081c294766cbf799ddf2157 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis. It includes algorithms for secondary structure prediction, including facility to predict base pairing probabilities. It also can be used to predict bimolecular structures and can predict the equilibrium binding affinity of an oligonucleotide to a structured RNA target. This is useful for siRNA design. It can also predict secondary structures common to two, unaligned sequences, which is much more accurate than single sequence secondary structure prediction. Finally, RNAstructure can take a number of different types of experiment mapping data to constrain or restrain structure prediction. These include chemical mapping, enzymatic mapping, NMR, and SHAPE data. License: unknown Vendor: Institut Pasteur Package: gensoft-roary-3.13.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 340181 Depends: gensoft-parallel-20200222, gensoft-exonerate-2.4.0, zlib1g, libc6, gensoft-blast+-2.10.0, gensoft-prank-170427, libbz2-1.0, gensoft-fasta-3.8h, gensoft-adm-perl-5.30.1, gensoft-r-3.6.2, gensoft-expat-2.2.9, gensoft-libiconv-1.16, gensoft-cd-hit-4.8.1, gensoft-xz-5.2.4, gensoft-libxml2-2.9.10, gensoft-gcc-9.2.0, gensoft-fasttree-2.1.11, gensoft-bppsuite-2.2.0, gensoft-mafft-7.453, gensoft-mcl-14-137, gensoft-adm-python-2.7.17, gensoft-bedtools-2.29.2 Filename: pool/main/gensoft-roary-3.13.0_1.0_amd64.deb Size: 115457066 MD5sum: 91bdaa91d2b9d37345e555d3146a6406 SHA1: 7e82506fd018ded79dfde0f7cff4ec9849141ea3 SHA256: 89621ecadcfbd9365149307eb6d6541ab3d7a31ca5f77a8b05dac57037a25617 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka) and calculates the pan genome. License: unknown Vendor: Institut Pasteur Package: gensoft-rock-1.9.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2052 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-rock-1.9.3_1.0_amd64.deb Size: 600744 MD5sum: 2024d7fe3030f005a79e1530de110f90 SHA1: d9d2772ec022fda11c7686f7b7559571188669e9 SHA256: 6234f3a533dc8cca4e4fa6e7609311ce167473a1b5d443bfc3bf5fc74126dfb9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ROCK (Reducing Over-Covering K-mers) is a command line program written in C++ that runs an alternative implementation of the digital normalization method (e.g. Brown et al. 2012, Wedemeyer et al. 2017, Durai and Schulz 2019). License: unknown Vendor: Institut Pasteur Package: gensoft-rock-1.9.4 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1849 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-rock-1.9.4_1.0_amd64.deb Size: 569162 MD5sum: 235dc3c2274f8034330734b65f59e2c3 SHA1: 498bce438469a1886177c94551cc531e6f4f76c7 SHA256: bcd387ec78f34cc1025f6f817a37a7d1462a02f04407a3cbef217f63e6b283f8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ROCK (Reducing Over-Covering K-mers) is a command line program written in C++ that runs an alternative implementation of the digital normalization method (e.g. Brown et al. 2012, Wedemeyer et al. 2017, Durai and Schulz 2019). License: unknown Vendor: Institut Pasteur Package: gensoft-rock-1.9.5 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1846 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-rock-1.9.5_1.0_amd64.deb Size: 568412 MD5sum: f5972ecc225de7bdd058d4f61a4601e5 SHA1: 3473be1b03b2ba2c266eb4ea3c1e29eee333ecef SHA256: 7bf32353f09f34b91c2b7fd29424a834c0988aad31ffa1fa5649845f36bdd722 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ROCK (Reducing Over-Covering K-mers) is a command line program written in C++ that runs an alternative implementation of the digital normalization method (e.g. Brown et al. 2012, Wedemeyer et al. 2017, Durai and Schulz 2019). License: unknown Vendor: Institut Pasteur Package: gensoft-rock-1.9.6 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1844 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-rock-1.9.6_1.0_amd64.deb Size: 567546 MD5sum: 6c1bb91fb42d250b9b268f7b4a6fab2c SHA1: eba05c9532a09fd9904a8aa77ff90c694be2893d SHA256: c6c0dea204ffb50a68b91853d9c6b3b45576b1c735a5d6e665e17c8ccd2c17f0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ROCK (Reducing Over-Covering K-mers) is a command line program written in C++ that runs an alternative implementation of the digital normalization method (e.g. Brown et al. 2012, Wedemeyer et al. 2017, Durai and Schulz 2019). License: unknown Vendor: Institut Pasteur Package: gensoft-rock-2.0.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1864 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-rock-2.0.0_2.0_amd64.deb Size: 573238 MD5sum: 8dc432cb7910317adc2a978501642da6 SHA1: 43ead108f1e665eefcf51b8bf135d63557cf346d SHA256: ee28acd5280e727348b4a5e9bf3aea175d5dd917c0f1852d4ff95914ecbced3d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: ROCK (Reducing Over-Covering K-mers) is a command line program written in C++ that runs an alternative implementation of the digital normalization method (e.g. Brown et al. 2012, Wedemeyer et al. 2017, Durai and Schulz 2019). License: unknown Vendor: Institut Pasteur Package: gensoft-rock-2.1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1865 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-rock-2.1.0_1.0_amd64.deb Size: 573634 MD5sum: 766b45bbabf06e11a2f29d1e810ad77a SHA1: 4314015870eedaabb2c42f302732063c8206d13d SHA256: 873fc02206d8a0c0bdc5ad4e5207753e71ac9a0674520d7bdf3aec05dab0c347 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: ROCK (Reducing Over-Covering K-mers) is a command line program written in C++ that runs an alternative implementation of the digital normalization method (e.g. Brown et al. 2012, Wedemeyer et al. 2017, Durai and Schulz 2019). License: unknown Vendor: Institut Pasteur Package: gensoft-rock-3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1858 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-rock-3.0_1.0_amd64.deb Size: 573040 MD5sum: 8d29c449ea356b355af8cc36fb658ff4 SHA1: 9aa752c5e85f7809afb196ba8267c21c787d4baa SHA256: aa5473092bc0b6853e7864a002ded853f78ff9ea865b30d3a375972fb80d2c02 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: ROCK (Reducing Over-Covering K-mers) is a command line program written in C++ that runs an alternative implementation of the digital normalization method (e.g. Brown et al. 2012, Wedemeyer et al. 2017, Durai and Schulz 2019). License: unknown Vendor: Institut Pasteur Package: gensoft-rocksdb-6.7.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 663878 Depends: zlib1g, gensoft-gflags-2.2.0, gensoft-gcc-9.2.0, gensoft-snappy-1.1.8, libbz2-1.0, libc6, gensoft-lz4-1.9.2, gensoft-zstd-1.4.4 Filename: pool/main/gensoft-rocksdb-6.7.3_1.0_amd64.deb Size: 126344544 MD5sum: e073a4e87704d1af61d4de1b4e324e6a SHA1: 72055dac15bae92f1574a34d06c8eb77cac3b7ce SHA256: 65c8a5178f30a468654ac0664b2d30a47134f4989acf24a0784d1b2d3a2b75db Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A library that provides an embeddable, persistent key-value store for fast storage. License: unknown Vendor: Institut Pasteur Package: gensoft-rsat-2022-06-26 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 489766 Depends: gensoft-xz-5.2.5, libstdc++6, libfreetype6, libbz2-1.0, libuuid1, gensoft-libgd-gd-2.2.5, libssl1.1, gensoft-fontconfig-2.13.91, gensoft-gcc-9.2.0, gensoft-blast+-2.10.0, libfontconfig1, gensoft-freetype-2.10.1, gensoft-xorg-libs-1.1, libc6, gensoft-ghostscript-9.50, gensoft-r-4.1.0, gensoft-libtiff-4.1.0, gensoft-adm-python-3.8.1, gensoft-libjpeg-turbo-2.0.4, zlib1g, gensoft-weblogo-2.8.2, libpng16-16, gensoft-expat-2.4.1, gensoft-libpng-1.6.37, gensoft-bedtools-2.29.2, gensoft-vmatch-2.3.1, gensoft-fastqc-0.11.9, gensoft-mcl-14-137, libexpat1, gensoft-gnuplot-5.2.8, gensoft-adm-perl-5.30.1, libgcc-s1, gensoft-weblogo-3.7.4 Filename: pool/main/gensoft-rsat-2022-06-26_1.0_amd64.deb Size: 176931998 MD5sum: 77ad8ea96acd76f6461dc143272d0c1f SHA1: 220c17cba01b4d2248045687dbb0c0c23f6b2397 SHA256: 64d14a0b45e8c3d69e826f36df2d9b0a7d898ecc514cf270ae5fd8fe14331eed Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: local version of the Regulatory Sequence Analysis Tools (RSAT). License: unknown Vendor: Institut Pasteur Package: gensoft-rsem-1.3.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 10502 Depends: libc6, gensoft-r-3.6.2, gensoft-hisat2-2.1.0, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17, zlib1g, gensoft-bowtie2-2.1.0, gensoft-adm-perl-5.30.1, gensoft-star-2.7.3a, gensoft-bowtie-1.2.3 Filename: pool/main/gensoft-rsem-1.3.3_1.0_amd64.deb Size: 5381346 MD5sum: 159341a76c44161fac5bd49a24ae9de5 SHA1: 1ce74d75226807fe9861a5d0098def48970de573 SHA256: a895ea1683958456177e5f9d24941ecfc00c3db9f60d09a487e728dc6eb76d29 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides an user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation. License: unknown Vendor: Institut Pasteur Package: gensoft-rseqc-3.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 138396 Depends: gensoft-adm-python-3.8.1, libc6, zlib1g, gensoft-r-3.6.2 Filename: pool/main/gensoft-rseqc-3.0.1_1.0_amd64.deb Size: 40129854 MD5sum: d705adc0ba4c4a070d305862cf469002 SHA1: a65b824ddc1519dd339be2e2aa7a71e1b5ccebfb SHA256: 90cf2dc09b60ae3012eeea8cbf30d61a3be67c0bcf05f09192748ab4c6790c44 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Deep transcriptome sequencing (RNA-seq) provides massive and valuable information of transcribed regions in the genome. Ideally, RNA-seq should be able to directly identify and quantify all RNA species, small or large, low or high abundance. However, RNA-seq is a complicated, multiple step process involving sample preparation, amplification, fragmentation, purification and sequencing. A single improper operation would result in biased or even unusable data. Therefore, it is always a good practice to check the quality of your RNA-seq data before analysis. Here we developed RSeQC package to comprehensively evaluate RNA-seq datasets generated from human or other well annotated model organisms such as mouse, fly, zebrafish, etc. License: unknown Vendor: Institut Pasteur Package: gensoft-rubra-0.1.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7943 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-rubra-0.1.5_1.0_amd64.deb Size: 2646084 MD5sum: 598d0d4f3a08357f8ad3fa94ecfa5980 SHA1: e809d5b844f380a9b4dad43f2ad867beb66a4a53 SHA256: 2eaa31d1430107810a15c0135d7962112222e018c10f07bcb9627485cdadb000 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Infrastructure code to support DNA pipeline License: unknown Vendor: Institut Pasteur Package: gensoft-ruby-2.7.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 47004 Depends: gensoft-gdbm-1.18.1, libncurses5, gensoft-gmp-6.2.0, libreadline8, libssl1.1, gensoft-libffi-3.2.1, libc6, libbz2-1.0, libtinfo5, zlib1g, gensoft-db-18.1.32 Filename: pool/main/gensoft-ruby-2.7.0_1.0_amd64.deb Size: 25889034 MD5sum: 8e37ae6f656ca4fa50c662e5681cad01 SHA1: 0d3188a4d5488867348564f9a1f0c2e7c406dd92 SHA256: 35565048ed82627f66b14ffdf13293bb74fdd04f3b0c4094a5aa97a1a9d44446 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write. License: unknown Vendor: Institut Pasteur Package: gensoft-rust-1.43.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 742919 Filename: pool/main/gensoft-rust-1.43.0_1.0_amd64.deb Size: 190287680 MD5sum: 5f620945e816db4c15a3e72bd29d65a9 SHA1: f3060c87710541183884924d94d98628e82efa49 SHA256: ada2f884b9648a3a885533c15c1643173e7bc29e9e884b03e3decfb2df2297a3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: language empowering everyone to build reliable and efficient software License: unknown Vendor: Institut Pasteur Package: gensoft-rust-1.57.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1109394 Depends: libc6, zlib1g, libgcc-s1 Filename: pool/main/gensoft-rust-1.57.0_2.0_amd64.deb Size: 255205578 MD5sum: db5f4a3bd6ed3847192be6305d2648e5 SHA1: fb5eef1e9c7621595cf078bef8154af5294bcdbf SHA256: a463462f7e20eba19ba255f4dbfc74f3a4171bd2b865be7e5fe708771e2640e4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: language empowering everyone to build reliable and efficient software License: unknown Vendor: Institut Pasteur Package: gensoft-rust-1.66.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1422466 Depends: zlib1g, libc6, libgcc-s1 Filename: pool/main/gensoft-rust-1.66.1_1.0_amd64.deb Size: 324601310 MD5sum: d418b5b7e97a1a573d563c1cdf5b3563 SHA1: 35c093d2c590c864a1be0d4725d1d3986937671b SHA256: 00b18b37d164442e2f1bc8030ed35733473bc4989f3b0bdc95efe8e12a56415f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: language empowering everyone to build reliable and efficient software License: unknown Vendor: Institut Pasteur Package: gensoft-rust-1.87.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1479273 Depends: libc6, zlib1g, libgcc-s1 Filename: pool/main/gensoft-rust-1.87.0_1.0_amd64.deb Size: 365495554 MD5sum: 395eee7445384bf78fafe0f4d63fe424 SHA1: d8149796ff0554e16cc2f4961afc3196bb8e5995 SHA256: e1717fcfc22bd63b114ba600596458fc2cc0ff39e0fceadcf947b05758869053 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: language empowering everyone to build reliable and efficient software License: unknown Vendor: Institut Pasteur Package: gensoft-rust-mdbg-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 151419 Depends: libgcc-s1, gensoft-seqtk-1.3, time, libcrypt1, zlib1g, bc, libstdc++6, gensoft-adm-python-3.8.1, libc6, gensoft-gfatools-0.5 Filename: pool/main/gensoft-rust-mdbg-1.0.1_1.0_amd64.deb Size: 47468520 MD5sum: 72c317fd91b144680800899d9d8e5c45 SHA1: 6bd209435e333e7748ff0eacfa468f90b785f5c8 SHA256: 31cc701614452fdd310b5052c02bc9a253913cce607274d7c7d70c756a777b98 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: rust-mdbg is an ultra-fast minimizer-space de Bruijn graph (mdBG) implementation, geared towards the assembly of long and accurate reads such as PacBio HiFi. License: unknown Vendor: Institut Pasteur Package: gensoft-rvtests-2.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 353888 Filename: pool/main/gensoft-rvtests-2.1.0_1.0_amd64.deb Size: 120373190 MD5sum: 4f375091e9511e195c2c83a316ae8dac SHA1: f019ac5ea41c70d60bd7bd1374358683fba857b8 SHA256: d46106af4361e91b9f6fc5a9e1c065d92d2f8107644f6177aeda4684ced8f224 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Rvtests, which stands for Rare Variant tests, is a flexible software package for genetic association analysis for sequence datasets. License: unknown Vendor: Institut Pasteur Package: gensoft-salmon-1.1.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 125387 Depends: gensoft-gcc-9.2.0, libc6, gensoft-tbb-2020.1 Filename: pool/main/gensoft-salmon-1.1.0_2.0_amd64.deb Size: 46697894 MD5sum: 7085e5f6894c276eb3f8b95295fc2830 SHA1: e7c0cab1ccfce88bb59e417d0a00f68463e8537a SHA256: d44bf8f887fcac7aea381ac70b322d16e96f2e83ef2c3fd48cca601ab1858747 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Salmon is a tool for wicked-fast transcript quantification from RNA-seq data. License: unknown Vendor: Institut Pasteur Package: gensoft-salmon-1.3.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 37875 Depends: gensoft-gcc-9.2.0, gensoft-tbb-2020.1, libc6, zlib1g Filename: pool/main/gensoft-salmon-1.3.0_2.0_amd64.deb Size: 16516782 MD5sum: 4a00fb2cdb06ebbb2515c5f7cef6a95a SHA1: abc6180e723c79cd7d8dd7cdc75f91b8d322333e SHA256: 9219832ecf96fdcf32ecd0b4b85ac564ceb20485ec55ce4755f924a3b51efd25 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Salmon is a tool for wicked-fast transcript quantification from RNA-seq data. License: unknown Vendor: Institut Pasteur Package: gensoft-salmon-1.9.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 29200 Depends: zlib1g, gensoft-tbb-2021.5, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-salmon-1.9.0_2.0_amd64.deb Size: 7566566 MD5sum: 756ed77c3cbeb9d97c050cac9d6a8fa5 SHA1: fda38f038cf74e8fd66f758d663c1b9df1314c3d SHA256: e63c1956915e1dc70788776afdd335fd99b3c156ace01662ce7e5264a3877be4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Salmon is a tool for wicked-fast transcript quantification from RNA-seq data. License: unknown Vendor: Institut Pasteur Package: gensoft-salmonella-crispr-typing-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 85362 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-salmonella-crispr-typing-1.0.1_1.0_amd64.deb Size: 25094976 MD5sum: 127cde3185ec8e48be0362f123280eba SHA1: 7337f6572695016a035097c5e840687e6d3fb35d SHA256: 333f78edc8b241d3bc2290f276447392a7e81372287ee27797243174a3f22941 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This tool gets a CRISPR profile by identifying the presence of known spacers and direct repeats (DRs) in a given sequence based on a catalogue. License: unknown Vendor: Institut Pasteur Package: gensoft-sam2msa-0.2.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 21556 Depends: libc6, zlib1g Filename: pool/main/gensoft-sam2msa-0.2.2.1_1.0_amd64.deb Size: 7962772 MD5sum: 523911ee63333e54a9227a7ce05ea839 SHA1: f94895eaf643cc6b6643a4db656914698db12f84 SHA256: 4df1a826df43263c042356dec374917db3ba588ebb267c048fa6b48992be1d8d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Building a multiple sequence alignment well-suited for phylogenetic analysis from read mapping data License: unknown Vendor: Institut Pasteur Package: gensoft-sam2msa-0.3.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 21556 Depends: libc6, zlib1g Filename: pool/main/gensoft-sam2msa-0.3.3.1_1.0_amd64.deb Size: 7959318 MD5sum: 19acf84bae52f35156c4a3fff4fc54a4 SHA1: ded0d4fe6953f852c9114e1dd5c1795069c73bd2 SHA256: e8f10ad142f5fe36cd49d5c98005ce0e0a7944e0c9935514ee04e74e270c17b2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Building a multiple sequence alignment well-suited for phylogenetic analysis from read mapping data License: unknown Vendor: Institut Pasteur Package: gensoft-sam2msa-0.4.3.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 36883 Depends: libc6, zlib1g Filename: pool/main/gensoft-sam2msa-0.4.3.1_1.0_amd64.deb Size: 11913922 MD5sum: 69004ebc9ffc9a3c5f9c3f421203f240 SHA1: 8d55aba035cb6bd9a01f8ea1c07d8c17b1388f79 SHA256: adbcbd111421f0c218e0088cb860d2ca6c28c954c6d4683db230a0b848bac945 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Building a multiple sequence alignment well-suited for phylogenetic analysis from read mapping data License: unknown Vendor: Institut Pasteur Package: gensoft-sambamba-0.7.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 23776 Filename: pool/main/gensoft-sambamba-0.7.1_2.0_amd64.deb Size: 5893468 MD5sum: a7bb1189ee950093417e0a2632b86b79 SHA1: 9448946fd7c62c9ce2b5f64a7ef2ead51e20495d SHA256: 1366b37f8d4ea2c1421f336e40c3981189b290a9a2fc8aaac1a926ba5624570e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Sambamba is a high performance highly parallel robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files. License: unknown Vendor: Institut Pasteur Package: gensoft-sambamba-1.0.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 19519 Depends: gensoft-lz4-1.9.2, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-sambamba-1.0.0_2.0_amd64.deb Size: 4357784 MD5sum: c5d73efb728c33190df188194d4aded6 SHA1: c0f8dbee0096231638f4f167a88b6810136b461b SHA256: 373c2d3c2227915b3bf16c4d7b0170ff2dc53f33de2a544d5b758b74b2881a12 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Sambamba is a high performance highly parallel robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files. License: unknown Vendor: Institut Pasteur Package: gensoft-samblaster-v.0.1.24 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 176 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-samblaster-v.0.1.24_1.0_amd64.deb Size: 130640 MD5sum: 3a56f24288f46b12bdb43b940de2b5a2 SHA1: e34ec6f8ad5c72da734125c79603ae3681aaec24 SHA256: d4b32634fa7a720aa7d596e654060e76330fe54b736125985f00930ce3c3f589 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. License: unknown Vendor: Institut Pasteur Package: gensoft-samclip-0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 9 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-samclip-0.2_1.0_amd64.deb Size: 5626 MD5sum: 8b6625bbc307de11ac0ca2167de03d13 SHA1: 720b56c88ab4c297ecf5bc854914ebe8de2b5f5c SHA256: bb0420c5afa7e63b1d5612866246dc13bd724330d1dfc15a3c017c37fda67cb1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Filter SAM file for soft and hard clipped alignments License: unknown Vendor: Institut Pasteur Package: gensoft-samstat-1.5.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 228 Depends: libc6, gensoft-samtools-1.10 Filename: pool/main/gensoft-samstat-1.5.1_1.0_amd64.deb Size: 84974 MD5sum: 0bcb8845ce96f7d03a437d85652792c7 SHA1: 6bc27a38074b7e553307c10cd110575564dc4df6 SHA256: 912693dd513c9cd41b0dd1869107e409ce6e816492e1ed4da93db54b7bd1adde Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: display statistics of large sequence files from next generation sequencing projects stored in SAM/BAM format License: unknown Vendor: Institut Pasteur Package: gensoft-samtools-0.1.18 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2529 Depends: gensoft-adm-python-2.7.17, libc6, libncurses5, libtinfo5, gensoft-adm-perl-5.30.1, zlib1g Filename: pool/main/gensoft-samtools-0.1.18_1.0_amd64.deb Size: 932158 MD5sum: b7ca9c9b8b68e8e9d5ebf045a3cdd66b SHA1: c8916053b1362feb8a690a4103cba535fdd93b0f SHA256: 3c9133e00c0c4384bcbd8cc8aa4707e2ff2ea39f20812cb25e487ba01baa691f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format License: unknown Vendor: Institut Pasteur Package: 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Scalpel is designed to perform localized micro-assembly of specific regions of interest with the goal of detecting mutations with high accuracy and increased power. 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License: unknown Vendor: Institut Pasteur Package: gensoft-scoary-1.6.16 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 159930 Depends: libc6, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-scoary-1.6.16_1.0_amd64.deb Size: 50687996 MD5sum: 156517b154bd54bd3dc45214cb885389 SHA1: 3643911a487f43b3456c0068926493f9f628ece8 SHA256: 3b79d23f9d3c6e394e111cf6a32ec3b5c71b68364fe79572fc1d20fa532c151b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Pan-genome wide association studies. Scoary is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the assocations between all genes in the accessory genome (all genes that are present in i genomes where 1 < i < N) and the traits. Scoary reports a list of genes sorted by strength of association per trait. License: unknown Vendor: Institut Pasteur Package: gensoft-scotch-6.0.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3167 Depends: libc6 Filename: pool/main/gensoft-scotch-6.0.9_1.0_amd64.deb Size: 2116086 MD5sum: d35be8b7c29a34544f226eb72788df42 SHA1: 5573764ee1bc270fb65b4bc252fae7134ed599ac SHA256: 3e49915778216d8d0d0b2c8a161532c9dd481cfda57d39bad1579ae6d33ce22f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning. License: unknown Vendor: Institut Pasteur Package: gensoft-scripture-beta Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 17101 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-scripture-beta_1.0_amd64.deb Size: 16685756 MD5sum: 9fdb77aa36ae1dd59e06da7cbff53023 SHA1: 523642db8878e0b0bba18c6d40d2c030ba673f6b SHA256: 767f6c59accefb532693081f3f91d742daa94b920ded9b12246e915d560310f0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a method for transcriptome reconstruction that relies solely on RNA-Seq reads and an assembled genome License: unknown Vendor: Institut Pasteur Package: gensoft-sdl-2.0.12 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 30133 Depends: libc6 Filename: pool/main/gensoft-sdl-2.0.12_1.0_amd64.deb Size: 8059596 MD5sum: c8b9a1239f1c28f36a04efd6c7dfa634 SHA1: 3bbc33905a176248142d8d5d025798fa4fa7278f SHA256: cde717bbbd6c5ad09366dae7004376485508f7c3a49c2ce0e0b02cf2dd7fd5a2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Simple DirectMedia Layer is a cross-platform development library designed to provide low level access to audio, keyboard, mouse, joystick, and graphics hardware via OpenGL and Direct3D. License: unknown Vendor: Institut Pasteur Package: gensoft-sdsl-lite-2.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5465 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-sdsl-lite-2.1.1_1.0_amd64.deb Size: 1417492 MD5sum: 8e6a50d4e55539f8f8900c2a23aa7465 SHA1: 2af9ad4329836f7623c0dd1560360819e04be9df SHA256: 5c07798d7b0d8d9c41f8fc8189e1231078eecabfc2e5e0c31f2b2ca139ff4b54 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures. License: unknown Vendor: Institut Pasteur Package: gensoft-sdsl-lite-2.3.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 3843 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-sdsl-lite-2.3.1_1.0_amd64.deb Size: 985136 MD5sum: d6b1089b86fe6832ccd71985c20afc3b SHA1: a47663787b52fa8604eb8975fbbd19e7273aed8e SHA256: d5a4502b850f6c5021032541daaf4d9ce7bc1f644eb38f183fb6327417a69769 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures. 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License: unknown Vendor: Institut Pasteur Package: gensoft-sepp-4.5.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 27381 Depends: gensoft-graalvm-ce-java8-20.0.0, gensoft-adm-python-3.8.1, gensoft-hmmer-3.2.1 Filename: pool/main/gensoft-sepp-4.5.1_1.0_amd64.deb Size: 11151322 MD5sum: 81f9b8ebf73958871bb343c8c6d61157 SHA1: 727a2345cceb8d51027764a2854a52e226837afa SHA256: fb16e7e7f906d831dfecfe35985c54d3a20f61c865e608edabe140244363e10b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Ensemble of HMM methods (SEPP, TIPP, UPP) License: unknown Vendor: Institut Pasteur Package: gensoft-seq-gen-1.3.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 333 Depends: libc6 Filename: pool/main/gensoft-seq-gen-1.3.4_1.0_amd64.deb Size: 135188 MD5sum: fc50c500042b3189194583c773c274b5 SHA1: 7aefccbdd35322ed40dbb771b469cbdaea818d08 SHA256: 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Priority: extra Homepage: http://example.com/no-uri-given Description: an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data License: unknown Vendor: Institut Pasteur Package: gensoft-seqexclude-0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 25 Depends: gensoft-squizz-0.99c, libc6 Filename: pool/main/gensoft-seqexclude-0.1_1.0_amd64.deb Size: 9360 MD5sum: 5a49eb9ce9e4410beb6c432579f860e2 SHA1: 6693f07c781121e5b4fc89d172ae653c15c51d18 SHA256: 73067c66ad9bdc76b98a4600049e0c750e1cfd49ba1e7ad9ed64a4b3c13efef4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: filter fasta sequences based on size License: unknown Vendor: Institut Pasteur Package: gensoft-seqkit-0.14.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 14049 Depends: libc6, zlib1g, libbz2-1.0 Filename: 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Pasteur Package: gensoft-seqkit-2.8.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 18145 Depends: zlib1g, libc6, libbz2-1.0 Filename: pool/main/gensoft-seqkit-2.8.2_1.0_amd64.deb Size: 8082140 MD5sum: a5f72ee95841e72d2a92b7d82c280af1 SHA1: efad12e898ff7c72c664f4ad0d5aea05814ae25f SHA256: 1ed65a2c8698e1afe48805e0cb89bb0a5b5997a5158178f713d4f3ed387f94be Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A cross-platform and ultrafast toolkit for FASTA/Q file manipulation License: unknown Vendor: Institut Pasteur Package: gensoft-seqlib-1.1.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 12025 Filename: pool/main/gensoft-seqlib-1.1.2_1.0_amd64.deb Size: 2480328 MD5sum: 8422f39d2c90cdbc2538cfbbba35d7f1 SHA1: 4664d97eea03f20c7a086dd0e14aabb0549a48d8 SHA256: 3204e07d407e8bd8ce0dde0080d7ea0dfddc6b17ed258b9db1c0fc5d5b48d83d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: C++ interface to HTSlib, BWA-MEM and Fermi License: unknown Vendor: Institut Pasteur Package: gensoft-seqprep-1.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 128 Depends: libc6, zlib1g Filename: pool/main/gensoft-seqprep-1.2_1.0_amd64.deb Size: 44868 MD5sum: 1ba69aad3106ff28031cc338075f0e1f SHA1: ca8657d99c7e437327a408819b88503cc1607b8c SHA256: 5c66daf4c8b9e20cba43c4c18bd1181a666e55e24355e75805aa022299a5615d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program to merge paired end Illumina reads that are overlapping into a single longer read. It may also just be used for its adapter trimming feature without doing any paired end overlap. License: unknown Vendor: Institut Pasteur Package: gensoft-seqprep-1.3.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 128 Depends: zlib1g, libc6 Filename: pool/main/gensoft-seqprep-1.3.2_1.0_amd64.deb Size: 44930 MD5sum: 775f160b2da29dfb5b7f0890d4250e7f SHA1: 2501feb665fabbbca94eb24d4abb1d7f1a6d18d9 SHA256: df4bb480c11d8dc85629520dac3dbf38439d4ef736563aecd7b33324462501e2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a program to merge paired end Illumina reads that are overlapping into a single longer read. It may also just be used for its adapter trimming feature without doing any paired end overlap. License: unknown Vendor: Institut Pasteur Package: gensoft-seqsplit-1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 51 Depends: libc6 Filename: pool/main/gensoft-seqsplit-1.1_1.0_amd64.deb Size: 16410 MD5sum: 1f60ea82bf6ad8944b91ccf4659350a4 SHA1: 14f3f160df71e97abed4cfac1e05a6c305f893ff SHA256: b7be35c8e2cec9f2f05c442b1ac5156b8673ecd7f935dc2bb52429732849bfcc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Split up query into smaller overlapping chunks License: unknown Vendor: Institut Pasteur Package: gensoft-seqtk-1.0-r68e Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 279 Depends: libc6, zlib1g Filename: pool/main/gensoft-seqtk-1.0-r68e_1.0_amd64.deb Size: 107040 MD5sum: 5eeae62bc8e35e7d6c5a95814c211693 SHA1: 00a18eb6f41231a334f36f2940888e1c4519424c SHA256: 7c3805e8d56d187066a0fda7e56851a62e305facb216f20bd65bd519cc4a384e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. 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Tabtk is a tool for processing TAB/SPACE-delimited data License: unknown Vendor: Institut Pasteur Package: gensoft-seqtk-1.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 331 Depends: libc6, zlib1g Filename: pool/main/gensoft-seqtk-1.4_1.0_amd64.deb Size: 120548 MD5sum: e415a2421934cdb7ea4522c4b6156c46 SHA1: 1b1ebfe8e3c8edd836a1536e0812ae463c4f0400 SHA256: 4ad817b43d43d423b37478451e000d197450226ffcf30820fc3e8267ee4a2e7f Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip. Tabtk is a tool for processing TAB/SPACE-delimited data License: unknown Vendor: Institut Pasteur Package: gensoft-seqtk-1.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 334 Depends: zlib1g, libc6 Filename: pool/main/gensoft-seqtk-1.5_1.0_amd64.deb Size: 121030 MD5sum: c707733ed3d44b5fed2ac32d503c702d SHA1: 7e4939bbdd72fb1ff1ae086fa74bb181678f5bca SHA256: b37a6107df65eb33777b3373e076ecd6a1914b01d8d74f34ca3b3e934c47e463 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip. 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License: unknown Vendor: Institut Pasteur Package: gensoft-shapeit-2.r904 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1880 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-shapeit-2.r904_1.0_amd64.deb Size: 696142 MD5sum: 975ae14a2f583f2eb20ad8fa76e7f8f4 SHA1: 99d5fea977c7d9778cbb252c219f0a771c666e97 SHA256: e8f6901d91f120d54cfa7609ccd71d93607db0288ad875b05d6548543670aa23 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-shapeit4-4.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1491 Depends: gensoft-boost-1.72.0, gensoft-htslib-1.10, gensoft-curl-7.68.0, gensoft-zstd-1.4.4, gensoft-xz-5.2.4, gensoft-gcc-9.2.0, libbz2-1.0, libssl1.1, zlib1g, libc6 Filename: pool/main/gensoft-shapeit4-4.2.1_1.0_amd64.deb Size: 846032 MD5sum: 1a4238c0d0107e511e6df13e0e8db4b5 SHA1: df9a01ca17aa637f29dfdd4e87d688956e38017e SHA256: 59bc3e0ef3704a297c4ba4cd2c1baa1a813cc01c347d54ca9addf522ed4ca3a1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Segmented HAPlotype Estimation and Imputation Tool License: unknown Vendor: Institut Pasteur Package: gensoft-shapeit4-4.2.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1492 Depends: gensoft-htslib-1.10, libssl1.1, libc6, gensoft-xz-5.2.5, gensoft-curl-7.68.0, gensoft-boost-1.72.0, gensoft-gcc-9.2.0, libbz2-1.0, zlib1g, gensoft-zstd-1.4.4 Filename: pool/main/gensoft-shapeit4-4.2.2_2.0_amd64.deb Size: 846930 MD5sum: 2b41768f1390447eb7a01d15b19cdfd5 SHA1: 6bc6a9292ed5dc7924f3ce8775e8ca0d3a2bf812 SHA256: ccf7da39e732711ee195460b614f331a2ba80dca390d611ebd94ceca58fcbec5 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Segmented HAPlotype Estimation and Imputation Tool License: unknown Vendor: Institut Pasteur Package: gensoft-shapeit5-1.0.0-beta Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 20362 Depends: gensoft-curl-7.68.0, libbz2-1.0, gensoft-gcc-9.2.0, libc6, zlib1g, gensoft-xz-5.2.5, libssl1.1 Filename: pool/main/gensoft-shapeit5-1.0.0-beta_2.0_amd64.deb Size: 7123704 MD5sum: c162f1333ea152449eb569fcfab6a7cf SHA1: 111bf900919c92674e94646a3b779372421c18b2 SHA256: 58117b0cdb901aa38fc36489caa72dc73f9993ee5e9db5ea3d53dfa495cfc42d Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Segmented HAPlotype Estimation and Imputation Tool License: unknown Vendor: Institut Pasteur Package: gensoft-shapeit5-5.1.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 30884 Depends: zlib1g, libc6, libssl1.1, gensoft-curl-7.68.0, gensoft-xz-5.2.5, gensoft-gcc-9.2.0, libbz2-1.0 Filename: pool/main/gensoft-shapeit5-5.1.1_2.0_amd64.deb Size: 10819110 MD5sum: fd796903dfc821372e4d6c26559705a8 SHA1: 7b7cfc3edaea9a315eb1b7036b378eb9f000cd47 SHA256: f559ac3994803d77309705c768119af0144b6c924692f373e1b55e2d872bb3c4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Segmented HAPlotype Estimation and Imputation Tool License: unknown Vendor: Institut Pasteur Package: gensoft-shapemapper-2.1.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 469195 Depends: gensoft-gcc-9.2.0, gensoft-bbmap-37.78, gensoft-xz-5.2.4, libbz2-1.0, libgcc-s1, libstdc++6, gensoft-boost-1.72.0, gensoft-adm-python-3.8.1, gensoft-ghostscript-9.50, gensoft-star-2.7.3a, gensoft-graphviz-2.42.3, gensoft-pipeviewer-1.6.6, debianutils, zlib1g, libc6, gensoft-zstd-1.4.4, gensoft-bowtie2-2.3.5.1 Filename: pool/main/gensoft-shapemapper-2.1.5_1.0_amd64.deb Size: 143234418 MD5sum: c6d6034739bb330d0e37ea9a55889b96 SHA1: 7b605f00ea38298544391e9b1134b4a886b2abde SHA256: 629cb3051e2151774c151a9a83279971522a1e293c96f837177482c7db18f335 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ShapeMapper automates the calculation of RNA structure probing reactivities from mutational profiling (MaP) experiments, in which chemical adducts on RNA are detected as internal mutations in cDNA through reverse transcription and read out by massively parallel sequencing. License: unknown Vendor: Institut Pasteur Package: gensoft-shigapass-1.2.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 8409 Depends: gensoft-blast+-2.15.0 Filename: pool/main/gensoft-shigapass-1.2.0_1.0_amd64.deb Size: 1045702 MD5sum: abef18fa43eb823e3e177124e3f1cccc SHA1: 3d654ad99846d9503d6b341b3a9632b4b1d6bafc SHA256: 57f38d23c840103201b99e9c8bbf618b4ec457c62d49eed39e3fd8e855a32fa0 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: An in silico tool to predict Shigella serotypes License: unknown Vendor: Institut Pasteur Package: gensoft-shigatyper-1.0.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 161251 Depends: gensoft-adm-python-3.8.1, libc6, gensoft-samtools-1.10, gensoft-minimap2-2.17 Filename: pool/main/gensoft-shigatyper-1.0.6_1.0_amd64.deb Size: 48578178 MD5sum: 84d43104bf85f507607700c3ea8fd141 SHA1: 7c70b4e749fc012afa7f8c29f1baaf8402f5732b SHA256: 1ab0b08774a9d281f1f9406ec2a23ff9e9d907b9913ac3774a76e8b9d53f29a0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: tool designed to determine Shigella serotype using fastq paired end reads with low computation requirement License: unknown Vendor: Institut Pasteur Package: gensoft-shigeifinder-1.2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 10538 Depends: gensoft-adm-python-3.8.1, gensoft-bwa-0.7.17, libc6, gensoft-samtools-1.10, gensoft-blast+-2.10.0 Filename: pool/main/gensoft-shigeifinder-1.2.0_1.0_amd64.deb Size: 3366816 MD5sum: 969258616ff068e8a05b7457b817dae2 SHA1: 1bfff297e65119b0370df49254bac7e93ce59f6c SHA256: 982e5b67c5a2506bfddb23e45579366a11454c8837d0c4cd21ee02ce043ed7a6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: identify differentiate Shigella/EIEC using cluster-specific genes and identify the serotype using O-antigen/H-antigen genes. License: unknown Vendor: Institut Pasteur Package: gensoft-shore-0.9.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 807690 Depends: zlib1g, gensoft-gsl-1.16, gensoft-gcc-9.2.0, libbz2-1.0, gensoft-genomemapper-0.4.4, gensoft-boost-1.61.0, gensoft-openmpi-4.0.5, libc6, gensoft-xz-5.2.4 Filename: pool/main/gensoft-shore-0.9.3_1.0_amd64.deb Size: 182979390 MD5sum: b4bb566225da56f0dbecf6f841a950dd SHA1: e5757ff9b3d061f9b358cb5a1a83fa5245f43175 SHA256: 6f5c4d69db6e657a59660085f79b50d9caeec757d755f9d770a63681961384a2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Analysis suite for Illumina short read data License: unknown Vendor: Institut Pasteur Package: gensoft-shovill-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 30 Depends: gensoft-kmc-3.1.1, gensoft-megahit-1.2.9, gensoft-skesa-2.3.0, gensoft-adm-perl-5.30.1, gensoft-flash-1.2.11, gensoft-samtools-1.10, gensoft-seqtk-1.3, gensoft-spades-3.14.0, gensoft-samclip-0.2, gensoft-pigz-2.4, gensoft-pilon-1.23, gensoft-lighter-1.1.2, gensoft-velvet-1.2.10, gensoft-trimmomatic-0.39, gensoft-mash-2.2, gensoft-bwa-0.7.17 Filename: pool/main/gensoft-shovill-1.1.0_1.0_amd64.deb Size: 13094 MD5sum: ffdfcfd06caa692348f75ea9097c3911 SHA1: 59ff0c58b5adbfca76dbba4dc543bbfff6f73b06 SHA256: 07fcff24f361308d58b26101c2f7ad8a60f68d344c7ae9a91224d23e67bc911d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Assemble bacterial isolate genomes from Illumina paired-end reads. Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too. License: unknown Vendor: Institut Pasteur Package: gensoft-shrimp-2.2.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 12842 Depends: zlib1g, gensoft-adm-python-2.7.17, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-shrimp-2.2.3_1.0_amd64.deb Size: 4508394 MD5sum: 2a0358bc264c92ec44fe58b8bee79d00 SHA1: 4585c54652a9ec84d70a97ba481eaa3511bef4a2 SHA256: fcd23f2d0cc6e46c94794a134acb29147d6ddf2b721c2551ee59feed39ef3aae Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem s colourspace genomic representation. License: unknown Vendor: Institut Pasteur Package: gensoft-sibelia-3.0.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 25012 Depends: gensoft-gcc-9.2.0, libc6, gensoft-adm-python-2.7.17, gensoft-lagan-2.0 Filename: pool/main/gensoft-sibelia-3.0.7_1.0_amd64.deb Size: 8631360 MD5sum: 7e4671e3f0f873f9c7fb070a64a0999c SHA1: 6456628710d40eabbeb368e71eb56eafc8c688e2 SHA256: 8c6251bc64d92d915d80fe0ac09f0b0a700fe43bb687f32ddf4cc1ab920b9a88 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A comparative genomics tool It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. PLEASE NOTE that Sibelai is currently installed without the variant annotation support License: unknown Vendor: Institut Pasteur Package: gensoft-sicer-1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 165395 Depends: libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-sicer-1.1_1.0_amd64.deb Size: 49385348 MD5sum: 3dda43e1e411f17cdd5e53f5fba81c0f SHA1: 500a7c455a908a4ffb968bbb030b63bd7c187e15 SHA256: c7e073601d6bfa230ffe910578df7c1d36887e07eaca9c79f675539ef8539bcc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A clustering approach for identification of enriched domains from histone modification ChIP-Seq data License: unknown Vendor: Institut Pasteur Package: gensoft-sicer2-1.0.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 197916 Depends: gensoft-adm-python-3.8.1, libstdc++6, libgcc-s1, zlib1g, gensoft-bedtools-2.31.1, libc6 Filename: pool/main/gensoft-sicer2-1.0.3_1.0_amd64.deb Size: 62325144 MD5sum: 4b2a8aa66dbd528a37a96d743f3e15d9 SHA1: 4e7ebe46288f5fc37d85e5788c1445fdc97e02a3 SHA256: 3d3a6c2374fc8d069015f781e7430b236c4004487bd3ad612969e25c900643e8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Redesigned and improved ChIP-seq broad peak calling tool SICER License: unknown Vendor: Institut Pasteur Package: gensoft-sickle-1.33 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 40 Depends: zlib1g, libc6 Filename: pool/main/gensoft-sickle-1.33_1.0_amd64.deb Size: 15538 MD5sum: 2e83d29395d13368ad86e7925df78d9f SHA1: 4d0913497bf9d59ae31c6e870c37d13204c5a1e0 SHA256: 09d590200bed68e9d0ff5c0bb17182bc62ef94e042de350584692e4a46f8139f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Windowed Adaptive Trimming for fastq files using quality License: unknown Vendor: Institut Pasteur Package: gensoft-sig-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 81 Depends: libc6 Filename: pool/main/gensoft-sig-1.0_1.0_amd64.deb Size: 31002 MD5sum: e487b245cfd0aa9cc94fd96383433285 SHA1: 18b2da3cd7f48ea8dfe5d9a5b52a6189e7878812 SHA256: a6f88881c9189ad9dcfbb243ef2e93ec54a96cf54f7b24a343abec4095dbed3d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Multiple Prosite motifs searching License: unknown Vendor: Institut Pasteur Package: gensoft-signalp-6.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4812821 Depends: gensoft-adm-perl-5.30.1, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-signalp-6.0_1.0_amd64.deb Size: 2736965658 MD5sum: 380400c0cfda18fb730ed918ef34b638 SHA1: 7f57178568ccd16558660d15048eed6de9c796c0 SHA256: 2cff6cf00447d2995228e08c619b78f199540c4ce205b406f0934b0c52585c6e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Predict signal peptides in proteins License: unknown Vendor: Institut Pasteur Package: gensoft-silent-tools-1.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3260897 Depends: sed, libgcc-s1, libstdc++6, gawk, coreutils, grep, gensoft-adm-python-3.10.7, zlib1g, gensoft-parallel-20200222, libc6 Filename: pool/main/gensoft-silent-tools-1.0_1.0_amd64.deb Size: 1682066624 MD5sum: e4d9944a63e0f6697345b575fbc167b8 SHA1: 4c827013c7343618cca5e98c0ff529da3d273649 SHA256: 216f9b328bcd790492cc708f597eebbdf6c6673ea49480583b8a69a9f0069e37 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A bunch of CLI utilities for dealing the silent files License: unknown Vendor: Institut Pasteur Package: gensoft-silix-1.2.11 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 579 Depends: gensoft-boost-1.72.0, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-silix-1.2.11_1.0_amd64.deb Size: 179672 MD5sum: 8770f11de0b45b8c40338406ce916af4 SHA1: 8b08559fc0f02b666eabc5cb2098faf30df0476a SHA256: e7e60bad493f414cd0b360e652f12c631981ad51c6081b28b1578adf43c630de Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: clustering of homologous sequences, based on single transitive links (single linkage) with alignment coverage constraints License: unknown Vendor: Institut Pasteur Package: gensoft-simde-0.7.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 18053 Filename: pool/main/gensoft-simde-0.7.2_1.0_amd64.deb Size: 2112896 MD5sum: bdddcd2ee61f9667d9491a5f969982a4 SHA1: 4f6592429250d6bc35d886e6f53d9987e5d3d532 SHA256: ba2b6e063995784096bb2da61a9110cc52cb8d6c8128ac79b47d8e6ebfd2c32c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Implementations of SIMD instruction sets for systems which dont natively support them License: unknown Vendor: Institut Pasteur Package: gensoft-simde-0.7.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 23978 Filename: pool/main/gensoft-simde-0.7.6_1.0_amd64.deb Size: 2770378 MD5sum: 6035d42dfb29de9a8b1898915f4ff22b SHA1: 553b066bdb6fa0dac1b75ddf491b8acabc7b1552 SHA256: 71872336155b86d015989b34a89b26570ead03ae5eafa2c0eea5552a84be6406 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Implementations of SIMD instruction sets for systems which dont natively support them License: unknown Vendor: Institut Pasteur Package: gensoft-simwalk2-2.91 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5154 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-simwalk2-2.91_1.0_amd64.deb Size: 931102 MD5sum: 4a3470a835bacdf4fe1b5e6a6af4cc2b SHA1: 79d436e890d1e6e72d584d1ebf501e9d3ca1f0dd SHA256: b91a0f091c029304d6a3318bd379cda017dd5ea7dbbd92ce935306b7476ad0dd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A statistical genetics computer application that uses Markov chain Monte Carlo and simulated annealing algorithms for haplotype, parametric linkage, non-parametric linkage (NPL), identity by descent (IBD) and mistyping analyses on any size of pedigree License: unknown Vendor: Institut Pasteur Package: gensoft-singularity-3.5.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 68398 Depends: gensoft-squashfs-4.4, libc6 Filename: pool/main/gensoft-singularity-3.5.2_1.0_amd64.deb Size: 32125792 MD5sum: 3b45cb12770093e9c0aa6d7715c9ff59 SHA1: 5298086e88379622e454e883f4b932b8b14f987f SHA256: fe79b0567a50907e5a04a6ca5f141ea81cfa8797194daf7062062a5addd079e9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-singularity-3.5.3 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 68472 Depends: gensoft-squashfs-4.4, libc6 Filename: pool/main/gensoft-singularity-3.5.3_1.0_amd64.deb Size: 32152506 MD5sum: 0a3486ec125360c7c90aea59b9c911d8 SHA1: 9de385bc872fa64e46c98457d5805d2159af7236 SHA256: 697903f1d8856ee5a87ed81c64b9e360d64db178a27cb30ae93f1e86386e4c52 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-singularity-3.6.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 102600 Depends: gensoft-squashfs-4.4, libc6 Filename: pool/main/gensoft-singularity-3.6.1_1.0_amd64.deb Size: 42342750 MD5sum: bce1133a080d0d057dc5675406e5b77b SHA1: 3e7ca255b9d8044417bc5ea4c3bb02f59a8665ea SHA256: 77d44887451d76fca388203b096694240c0f34bb5775ae9e82d1ca87021732fe Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-singularity-3.6.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 102778 Depends: gensoft-squashfs-4.4, libc6 Filename: pool/main/gensoft-singularity-3.6.2_1.0_amd64.deb Size: 42412622 MD5sum: 8ce82a10fbd6e251697846ce7b1c0465 SHA1: 2bda9c05738f7784becea22456b73ec9de81d14b SHA256: 0622fb719df519213a3c69b9103f019a87df2faee4619cb8439203690bf9c64b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-singularity-3.6.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 102822 Depends: gensoft-squashfs-4.4, libc6 Filename: pool/main/gensoft-singularity-3.6.4_1.0_amd64.deb Size: 42433168 MD5sum: 0fb7c0d3d509765b726f84af7cd1d110 SHA1: 5897fbf1a1868c610abdf4a5f5bb18ca08e8d60a SHA256: f84f781c9de9dd2abca6423233dab5588176e4722238d5fb43127dcf20d34475 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-singularity-3.7.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 104403 Depends: libc6, gensoft-squashfs-4.4 Filename: pool/main/gensoft-singularity-3.7.0_1.0_amd64.deb Size: 43070016 MD5sum: 858d7680a7c60b9dbf3d1415d426d46a SHA1: e96c1138b3bbb190683f1649f82a1ade60cb03aa SHA256: a15b82945f7cc3899de7d97b496a1cc62d47154e3888c42c9f0e2d7866851e87 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-singularity-3.7.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 105672 Depends: gensoft-squashfs-4.4, libc6 Filename: pool/main/gensoft-singularity-3.7.3_1.0_amd64.deb Size: 43499934 MD5sum: 056faffbf1cc8ad35b888187bea5ab2c SHA1: faf16657dc906d6546fd50d207898f0f5f12dd1f SHA256: 508704ea4346ccd09d80dce4c1216ff4206fece4f335d92e1f0befdb7010e350 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-singularity-3.8.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 111085 Depends: gensoft-squashfs-4.4, libc6 Filename: pool/main/gensoft-singularity-3.8.1_1.0_amd64.deb Size: 45675320 MD5sum: 184c9a604d6b55dac82d90080b2be90c SHA1: b1417c3b7ea31279ebfe6113a5d2a02fce6d486c SHA256: 9e06c8a3d442b0a8b65246bd12c7802c19a85164abe94a1182e7dee89989e39b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-singularity-3.8.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 111080 Depends: gensoft-squashfs-4.4, libc6 Filename: pool/main/gensoft-singularity-3.8.3_1.0_amd64.deb Size: 45695816 MD5sum: b4703b5ee0aa41e73eb974b377dc495d SHA1: 68dc0017d40bdbf4b74d696916b204f8d7dad49a SHA256: ea407bb4d1ff93759d95ce2c9c64490ad4f63d3bf2c47eb467db876880f280e5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-singularity-3.8.5 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 88775 Depends: gensoft-squashfs-4.4, libc6 Filename: pool/main/gensoft-singularity-3.8.5_1.0_amd64.deb Size: 38348504 MD5sum: dbccec2099732a18178db036e25f5ca9 SHA1: 722c3219f2cfbcf8161957caa9ce61760e7702a9 SHA256: 4f4508291ba42b522d8883761ed5018bcb9d148eae5bd14c44ab1a1d1b236675 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-singularity-ce-3.8.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 110402 Depends: libc6, gensoft-squashfs-4.4 Filename: pool/main/gensoft-singularity-ce-3.8.0_1.0_amd64.deb Size: 45418630 MD5sum: b765233893f7ddd7e70d515f1aa3fd5d SHA1: 5545d6331e927aa14e602a0d565d1546c22cae66 SHA256: 3d4a2453a72f6057d37eb7a3ccdf9817a56e52626310f769bf438efc72be73f6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control. License: unknown Vendor: Institut Pasteur Package: gensoft-sistr-cmd-1.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 281332 Depends: gensoft-mafft-7.467, libgcc-s1, gensoft-mash-2.2, libc6, gensoft-curl-7.68.0, libstdc++6, zlib1g, libssl1.1, gensoft-blast+-2.10.1, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-sistr-cmd-1.1.1_1.0_amd64.deb Size: 119317922 MD5sum: 36ee03461a4742fc623e157c1b4991b1 SHA1: 58a066bb5caeadc7e7cdc4dc607e64a4ff48efc6 SHA256: 08ca02e2671943680d93b92074e92f968228bdd4ed8b7a1ba5f8a8113df0ef00 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Serovar predictions from whole-genome sequence assemblies by determination of antigen gene and cgMLST gene alleles using BLAST. Mash MinHash can also be used for serovar prediction. License: unknown Vendor: Institut Pasteur Package: gensoft-ska-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 9583 Depends: gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-ska-1.0_1.0_amd64.deb Size: 2717362 MD5sum: 7191befdbde0f652507b514ffc3c6d83 SHA1: a8449d145c7ac35674317941160b5c4be2f92226 SHA256: 9059017b198e9c080ed2fcc3ce310155baa370394fcf9aa4e05b83723808fe9a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other small, haploid) DNA sequence analysis using split kmers License: unknown Vendor: Institut Pasteur Package: gensoft-ska2-0.4.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6513 Depends: gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-ska2-0.4.1_1.0_amd64.deb Size: 2200036 MD5sum: f903f9d448a2f9f86ed16b43d61fd2f8 SHA1: 8ce73e160cdc0c4f737dc3792acb12d6d9f0c516 SHA256: 21702f94963e8a014713e2866bf9efdbbd98d8a33acb75c2e78fc76305a8d180 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Split k-mer analysis version 2 is a reimplementation of the SKA package in the rust language. SKA2 uses exact matching of split k-mer sequences to align closely related sequences, typically small haploid genomes such as bacteria and viruses License: unknown Vendor: Institut Pasteur Package: gensoft-skani-0.3.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 333130 Depends: gensoft-adm-python-3.8.1, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-skani-0.3.0_1.0_amd64.deb Size: 106286930 MD5sum: dd5a9fc72b21b13be9068d00d760ac6c SHA1: 0e8aaff18d31604094fe013349c74446fb783b3e SHA256: b538d94fc874753792b61de3d52f61ac57e78e6e9bbee850f65c7f206882e4eb Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs License: unknown Vendor: Institut Pasteur Package: gensoft-skesa-2.3.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7260 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-skesa-2.3.0_1.0_amd64.deb Size: 2561660 MD5sum: 73609ad265a7ae73febc3d0297b25d01 SHA1: 386c493342dbc809dcb15a2b67362a817ad66591 SHA256: c7a645f638db8067558a4fb23a15342a618a7ed9331f191b644ef2bac2717fe2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SKESA is a de-novo sequence read assembler for microbial genomes based on DeBruijn graphs. It uses conservative heuristics and is designed to create breaks at repeat regions in the genome. This leads to excellent sequence quality. Using kmers longer than mate length and up to insert size also allows SKESA to attain good contiguity as determined by the N50 statistic. It is a multi-threaded application that scales well with the number of processors. For different runs with the same inputs, including the order of reads, the order and orientation of contigs in the output is deterministic. License: unknown Vendor: Institut Pasteur Package: gensoft-skesa-2.4.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 39001 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-skesa-2.4.0_1.0_amd64.deb Size: 14383680 MD5sum: 47d7672322746d8a43c37ebf10523015 SHA1: 49e38ec3d1916f9356782d5c11d57938045b14f6 SHA256: e79b650405ed239582b96566b4abefc4a9001e378a96a80a69d273dc16f84047 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SKESA is a de-novo sequence read assembler for microbial genomes based on DeBruijn graphs. It uses conservative heuristics and is designed to create breaks at repeat regions in the genome. This leads to excellent sequence quality. Using kmers longer than mate length and up to insert size also allows SKESA to attain good contiguity as determined by the N50 statistic. It is a multi-threaded application that scales well with the number of processors. For different runs with the same inputs, including the order of reads, the order and orientation of contigs in the output is deterministic. License: unknown Vendor: Institut Pasteur Package: gensoft-skewer-0.2.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 204 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-skewer-0.2.2_1.0_amd64.deb Size: 85346 MD5sum: 6ae1e2f3213dad1c12dace24d24a3de6 SHA1: 3b99e2897296b1fb3f08c0765b16ddfb30649a92 SHA256: a6fca63ddce59962de229d304555841add08b117e9426e7aa7fc6d37849912a2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-slamem-0.8.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 105 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-slamem-0.8.5_1.0_amd64.deb Size: 50690 MD5sum: 772e28364cc521a3638831df1709eede SHA1: b2c7530a101b2581ee0ed8585ed6e2df43e56f3c SHA256: 4e0e7256ae7f9adb7de021221fd2bfc38aec14c87942d0c313d091069ecacd3e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array License: unknown Vendor: Institut Pasteur Package: gensoft-slim-3.3.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 32326 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-slim-3.3.2_1.0_amd64.deb Size: 20810064 MD5sum: ad9a980f1061d1ad352a69188c5aedcd SHA1: d31a9aa3a5640c180a726afbe1efdd8fab841373 SHA256: ec94d9b85888036d238ab88ce0fc7aa326fea955fcda796ec67450a49c328920 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SLiM (Selection on Linked Mutations) is an evolutionary simulation package that provides facilities for very easily and quickly constructing genetically explicit individual-based evolutionary models. License: unknown Vendor: Institut Pasteur Package: gensoft-slim-3.7.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 49798 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-slim-3.7.1_2.0_amd64.deb Size: 36087302 MD5sum: 6e3c535a576723ab25eebb3dbe351ef1 SHA1: e91a0943bf307bfbb821be29d18b6bbff06f303a SHA256: debf4b000ed9701e0896747f0dbcb5d677a3eca8973b96f550cf6b0e0ba59759 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: SLiM (Selection on Linked Mutations) is an evolutionary simulation package that provides facilities for very easily and quickly constructing genetically explicit individual-based evolutionary models. License: unknown Vendor: Institut Pasteur Package: gensoft-slim-4.0.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 50038 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-slim-4.0.1_2.0_amd64.deb Size: 36173924 MD5sum: 176f73fcd190b1628fb25d9d99908b04 SHA1: cb2e38e6aa3f3f67ef71f0797d6ac6cbcb448520 SHA256: e05697a9bf6ed8b3f725540f6d6714377c9bac45e7a383c3f55a420c92b08147 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: SLiM (Selection on Linked Mutations) is an evolutionary simulation package that provides facilities for very easily and quickly constructing genetically explicit individual-based evolutionary models. License: unknown Vendor: Institut Pasteur Package: gensoft-slipp-2024 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 348124 Depends: zlib1g, gensoft-fpocket-4.2.2, libgcc-s1, libc6, gensoft-adm-python-3.8.1, libstdc++6 Filename: pool/main/gensoft-slipp-2024_1.0_amd64.deb Size: 109929834 MD5sum: 28d765686f80d23fb36ee73ad1e4e200 SHA1: cf8b9518337a2981bd4c550c5068c59bb81202b0 SHA256: 99badd3a30e9e7e0eb0817818a19c493afece9da57cca541de0306037f766ace Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: extracts pocket information from given protein models and predict the possibility of the pocket being lipid-binding pockets through machine learning. License: unknown Vendor: Institut Pasteur Package: gensoft-smalt-0.7.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3378 Depends: gensoft-bambamc-0.0.50, zlib1g, libc6 Filename: pool/main/gensoft-smalt-0.7.6_1.0_amd64.deb Size: 1462228 MD5sum: b847b34160bea7129a923a3a979bdf90 SHA1: 4eab9dcd6c62a37564c254214b35e210c86015fc SHA256: e15fa94ec6acd8263bd2f59cd4976e964bf3cbb61defeebaf96895e8be6ecb57 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SMALT efficiently aligns DNA sequencing reads with a reference genome. License: unknown Vendor: Institut Pasteur Package: gensoft-smile-1.47 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 358 Depends: gensoft-adm-perl-5.30.1, libc6 Filename: pool/main/gensoft-smile-1.47_1.0_amd64.deb Size: 166952 MD5sum: 5a257868dbec7380a9b5d65c252f23eb SHA1: 030c363bbf4b71d6fb79aee29bc35608e1020ed1 SHA256: 4e7ec546fd127dddcae0a89939f1d5f60ffb179e538a6382db658b944874638c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A tool that infers motifs in a set of sequences, according to some criterias License: unknown Vendor: Institut Pasteur Package: gensoft-smina-7bd30e0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1939 Depends: libbz2-1.0, gensoft-zstd-1.4.4, gensoft-openbabel-3.1.1, libc6, gensoft-xz-5.2.4, gensoft-icu-65.1, gensoft-boost-1.72.0, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-smina-7bd30e0_1.0_amd64.deb Size: 653064 MD5sum: c7aa5ce18af3d87a26c419244f3bbedf SHA1: 331090ff4fd5a260cd2219661c2bf73441126063 SHA256: 7ab546190284173407cf17f04455cba69079748e011cd1ef21568770db2d7589 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: smina is a fork of Autodock Vina (http://vina.scripps.edu/) that focuses on improving scoring and minimization. License: unknown Vendor: Institut Pasteur Package: gensoft-smithwaterman-2610e25 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 498 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-smithwaterman-2610e25_1.0_amd64.deb Size: 190178 MD5sum: ebf8feb6a09a36dae625b34bbc2da44e SHA1: 34b13757bbeaa4abd24e4e70c86975a295fe30ac SHA256: a487f8cd11d6e5613c80508a97c47c26adc8d1128f3aeda590390a0b12a3264e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: smith-waterman-gotoh alignment algorithm License: unknown Vendor: Institut Pasteur Package: gensoft-smoothxg-0.6.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 78090 Depends: zlib1g, gensoft-jemalloc-5.2.1, gensoft-zstd-1.4.4, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-smoothxg-0.6.1_2.0_amd64.deb Size: 19407802 MD5sum: bd619b27fc6a4b08dd47461c98b4f981 SHA1: eb953dce5b5797a8c44ba0dc70df2f212879e21a SHA256: 3d332b2d19a14b69ef5e9d61dba1486b998bd45193f601c925f72ddaf83a605b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: seqwish implements a lossless conversion from pairwise alignments between sequences to a variation graph encoding the sequences and their alignments License: unknown Vendor: Institut Pasteur Package: gensoft-smoothxg-0.6.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4470 Depends: gensoft-zstd-1.4.4, gensoft-gcc-11.3.0, libc6, zlib1g, gensoft-jemalloc-5.2.1 Filename: pool/main/gensoft-smoothxg-0.6.4_2.0_amd64.deb Size: 1732798 MD5sum: e838417702798a41db54a54d6f17554a SHA1: a3d66f9a8e7127a1ec0087ce2b0b2cc142c127fc SHA256: 661afe883ff25485b950a7d4376864d19ee17f8ea0623a2b687d9fae35076a99 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: seqwish implements a lossless conversion from pairwise alignments between sequences to a variation graph encoding the sequences and their alignments License: unknown Vendor: Institut Pasteur Package: gensoft-smoothxg-0.6.5 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4492 Depends: zlib1g, gensoft-gcc-11.3.0, gensoft-jemalloc-5.2.1, libc6, gensoft-zstd-1.4.4 Filename: pool/main/gensoft-smoothxg-0.6.5_2.0_amd64.deb Size: 1746068 MD5sum: 1957162654594f80ace1853f782c22d7 SHA1: 26b63499599daf3458ecf43ea9e3cb9ac3697bb3 SHA256: 075a9a3609a5312f6455a1483372aae0bbd02b4b2a4b95f83864d48cc200a370 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: seqwish implements a lossless conversion from pairwise alignments between sequences to a variation graph encoding the sequences and their alignments License: unknown Vendor: Institut Pasteur Package: gensoft-smoothxg-0.6.8 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 4510 Depends: gensoft-jemalloc-5.2.1, gensoft-gcc-11.3.0, libc6, gensoft-zstd-1.4.4, zlib1g Filename: pool/main/gensoft-smoothxg-0.6.8_2.0_amd64.deb Size: 1748944 MD5sum: fb5b9b37db7c978fda18d351c1432082 SHA1: f2f25d6bb3eafaf42c381843b9617851c127ab30 SHA256: 0132a39e142706aad5b8248c0b8b38067b028ba0554fd5c1a6767888f44c60db Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: seqwish implements a lossless conversion from pairwise alignments between sequences to a variation graph encoding the sequences and their alignments License: unknown Vendor: Institut Pasteur Package: gensoft-smufin-0.9.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 862 Depends: zlib1g, libc6, gensoft-openmpi-4.0.5, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-smufin-0.9.4_1.0_amd64.deb Size: 377154 MD5sum: a486a3f137f8c8f5b1f096b43f5720de SHA1: 2cfb580b727fd93561aec298eae0a65d1fbf4eb8 SHA256: f1b797e44bf19d8fbe1d906979fc2a32bb141b27f54a259a3635c9378b55c3fd Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SMuFin (Somatic MUtation FINder) is a reference-free method designed to identify somatic variation on tumor genomes from the direct comparison with the corresponding normal genome of the same patient License: unknown Vendor: Institut Pasteur Package: gensoft-snakemake-5.15.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 22715 Depends: libc6, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-snakemake-5.15.0_1.0_amd64.deb Size: 6324848 MD5sum: 701038748d88b48f6efa4241f767b037 SHA1: 66feb4a40629e4e08d7c74047e8c99e4a4a8e119 SHA256: 8b07ad556d9cacb95b57a4db34c9a6ad25cf1dbe4a79992ceddd2fb404a2e963 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. License: unknown Vendor: Institut Pasteur Package: gensoft-snakemake-5.31.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 78774 Depends: libc6, gensoft-python-3.8.1 Filename: pool/main/gensoft-snakemake-5.31.1_1.0_amd64.deb Size: 47099676 MD5sum: 3ce138aaa2de307c820a51e779c47beb SHA1: 6034a84ae205f1ada416256d4b2d36571b9582bc SHA256: 95d955ad8de99230f82e946c48a0a2f56f74071d4fc20f70f6c20a2e94814390 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. License: unknown Vendor: Institut Pasteur Package: gensoft-snakemake-6.6.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 90540 Depends: gensoft-python-3.8.1, libc6 Filename: pool/main/gensoft-snakemake-6.6.1_1.0_amd64.deb Size: 50843504 MD5sum: 11087befe6d2698311cfbbf63fe364a7 SHA1: 676e42d6789df1f2bf232711fd305ecba996e037 SHA256: 384ee6c11ebb217e286baabb791caef5b8b7b516e2eb57109bfd50a5f38f9320 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. License: unknown Vendor: Institut Pasteur Package: gensoft-snakemake-7.16.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 64724 Depends: libstdc++6, libgcc-s1, libc6, gensoft-python-3.8.1 Filename: pool/main/gensoft-snakemake-7.16.1_1.0_amd64.deb Size: 24409340 MD5sum: 196bf51f04afbcbafc8d097b3da7c63c SHA1: efbe739b04d21dab518a99b4583977c7324b336b SHA256: c9c439d0a63f5bb046bf52f02511db60bca24c83f12b9411da50e43e64122d1a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. License: unknown Vendor: Institut Pasteur Package: gensoft-snakemake-7.32.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 82362 Depends: libgcc-s1, libc6, libstdc++6, gensoft-python-3.11.5 Filename: pool/main/gensoft-snakemake-7.32.3_1.0_amd64.deb Size: 30050804 MD5sum: 388cfaba95752d29c02cb117247254f4 SHA1: 3203d19199554d24ea7ba0046d0c92632e0cc49f SHA256: 7341cb64570b572e6e0623e25c673739891a857e36b7752167489ac29229e33d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. License: unknown Vendor: Institut Pasteur Package: gensoft-snakemake-7.32.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 82362 Depends: libc6, gensoft-python-3.11.5, libgcc-s1, libstdc++6 Filename: pool/main/gensoft-snakemake-7.32.4_1.0_amd64.deb Size: 30049986 MD5sum: 80c05d372e0d7503c9b4745be8c248b0 SHA1: be7bad2670e72249e4b42105cfeccc55fc9a7d23 SHA256: df883a0735a77ac91ce3b9f09e3603457de2f8f45a6f57cdaa3aa3126415e30a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. License: unknown Vendor: Institut Pasteur Package: gensoft-snakemake-8.25.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 90721 Depends: libgcc-s1, libc6, gensoft-python-3.11.5, libstdc++6 Filename: pool/main/gensoft-snakemake-8.25.5_1.0_amd64.deb Size: 34095900 MD5sum: e7942cc2d96be77638307fd11ee29a6a SHA1: 3a92f58e2c3213d5518bfc0e384b749d11dcf69d SHA256: 1c8edfe93a85a746fc3b4043515aa786ab7eb8209d3c16ec08fae3a30e07982a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. License: unknown Vendor: Institut Pasteur Package: gensoft-snap-2013-11-29 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2534 Depends: gensoft-adm-perl-5.30.1, libc6 Filename: pool/main/gensoft-snap-2013-11-29_1.0_amd64.deb Size: 929996 MD5sum: fd2a9b223909eea439ddd42ef48ef246 SHA1: b625c2fa9417adc912277a5a3d63fccbf6a08bf3 SHA256: 49c279a45fb40b2784c2cd03766de1faf916d59b17f3287085c0c3ce427b53a0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser. License: unknown Vendor: Institut Pasteur Package: gensoft-snappy-1.1.10 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 201 Depends: gensoft-gcc-9.2.0 Filename: pool/main/gensoft-snappy-1.1.10_1.0_amd64.deb Size: 58956 MD5sum: 3dac43f84cde22125836c203c20675b4 SHA1: 53e1f33437b6a0988b887f2d0e08dd1716118313 SHA256: ce244acc96c04b322cb0cd5135713050ed4a37d7055fa0934d6d5f53d6db952f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A fast compressor/decompressor License: unknown Vendor: Institut Pasteur Package: gensoft-snappy-1.1.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 177 Depends: gensoft-gcc-9.2.0 Filename: pool/main/gensoft-snappy-1.1.8_1.0_amd64.deb Size: 51248 MD5sum: 680682dc4379166bf54184bce842ed3e SHA1: 767ac94109edef8a68f39f7a73f94522c3e11d7e SHA256: 613ba3705b73b796d9822e1e1c6fc7dad1c1fb6d7b027aa2be68c7ed913ed8c4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A fast compressor/decompressor License: unknown Vendor: Institut Pasteur Package: gensoft-snaptools-1.4.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 155223 Depends: gensoft-adm-python-2.7.17, libstdc++6, libc6, libgcc-s1, gensoft-bowtie-1.2.3, gensoft-bwa-0.7.17, gensoft-minimap2-2.17, zlib1g, gensoft-bowtie2-2.3.5.1 Filename: pool/main/gensoft-snaptools-1.4.8_1.0_amd64.deb Size: 51825002 MD5sum: 328a0ad8c437f863a52b064f9de88c34 SHA1: a4114364170b93c69e9933f71e10b25e0d13e2eb SHA256: 6f9baf8c3e31117420a65070862bea56ee896220f0f183795a1770f88790d080 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A tool for working with snap files in Python. License: unknown Vendor: Institut Pasteur Package: gensoft-sniffles-2.0.7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 78535 Depends: gensoft-adm-python-3.8.1, zlib1g, libc6 Filename: pool/main/gensoft-sniffles-2.0.7_1.0_amd64.deb Size: 25117750 MD5sum: 78fdf988a79dc4deb1900f4d91b13ed0 SHA1: 598e0d7c6833cb643217eb92a845e3975b67bd80 SHA256: 31a6d83105fb5f230bbf24068c05b15fdd48d31fec75dcd0753ee9ebfd98a0a4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A fast structural variant caller for long-read sequencing, Sniffles2 accurately detect SVs on germline, somatic and population-level for PacBio and Oxford Nanopore read data License: unknown Vendor: Institut Pasteur Package: gensoft-snippy-4.6.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 18905 Depends: gensoft-samtools-1.10, gensoft-snpeff-4.3, zlib1g, gensoft-libxml2-2.9.10, gensoft-parallel-20200222, gensoft-vt-0.57721, gensoft-vcflib-1.0.1, gensoft-any2fasta-0.4.2, gensoft-emboss-6.6.0, gensoft-bwa-0.7.17, gensoft-libiconv-1.16, gensoft-expat-2.2.9, gensoft-seqtk-1.3, gensoft-xz-5.2.4, gensoft-minimap2-2.17, gensoft-samclip-0.2, gensoft-snp-sites-2.5.1, gensoft-adm-perl-5.30.1, gensoft-freebayes-v1.3.2, gensoft-bedtools-2.29.2, gensoft-adm-python-2.7.17, libc6 Filename: pool/main/gensoft-snippy-4.6.0_1.0_amd64.deb Size: 5003140 MD5sum: d33ae914fa3bb6bc0bd2f4c3ee6deac6 SHA1: ee09d6fd29222f26e1f6513b2951149dbb312c15 SHA256: e07d247b3555f1351d22e068feb78d95aaccb6e2a3b066a38879952f921289b9 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Rapid haploid variant calling and core SNP phylogeny License: unknown Vendor: Institut Pasteur Package: gensoft-snoreport-1.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1874 Depends: gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-snoreport-1.3_1.0_amd64.deb Size: 385806 MD5sum: 1254705f64f404be38f54187971ff8cf SHA1: a332d73d6345529a370fa0f1b48fa3cf2bbe241d SHA256: 0823b385bdec32abb15beddbe31f47c7279dff90802fdc8bc482cac1b6e87800 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Computational identification of snoRNAs with unknown targets License: unknown Vendor: Institut Pasteur Package: gensoft-snp-dists-0.8.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 24 Depends: gensoft-gcc-9.2.0, libc6, zlib1g Filename: pool/main/gensoft-snp-dists-0.8.2_1.0_amd64.deb Size: 10000 MD5sum: fc4f0ca23b9e24c415398b3bd6fd5504 SHA1: fa3b49fd90cf6ecaf0e1f7e6c6905007c5d7aec1 SHA256: 6a51b09099cbdb597b80cceadd0dc4e1e71852ef8c2949ca7e5d758cddbfde9b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Pairwise SNP distance matrix from a FASTA sequence alignment License: unknown Vendor: Institut Pasteur Package: gensoft-snp-sites-2.5.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 239 Depends: zlib1g, libc6 Filename: pool/main/gensoft-snp-sites-2.5.1_1.0_amd64.deb Size: 73930 MD5sum: 58add02562491990791988d8ae4f8a4b SHA1: a5b4b56aac9a363e7cdc269cc4a2f8e473d1b16b SHA256: 26b67794378fa0fadd05011698b19cb25a6d82657ec239a28176367fd93e9c0c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Rapidly extracts SNPs from a multi-FASTA alignment License: unknown Vendor: Institut Pasteur Package: gensoft-snp2hla-v1.0.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 17003 Depends: gensoft-graalvm-ce-java8-20.0.0, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0, which, tcsh, gensoft-plink-1.07 Filename: pool/main/gensoft-snp2hla-v1.0.3_1.0_amd64.deb Size: 695048 MD5sum: b0d6f00f9f8020cc2a3921e30cfb0f02 SHA1: de340b3a4aaa5eb463a45763aad2cce6322b4045 SHA256: 1129307e2b823adc24a19c05439bdf5d960816633832f634180899b09f3eec32 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: tool to impute amino acid polymorphisms and single nucleotide polymorphisms in human luekocyte antigenes (HLA) within the major histocompatibility complex (MHC) region in chromosome 6. License: unknown Vendor: Institut Pasteur Package: gensoft-snpeff-4.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 69856 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-snpeff-4.3_1.0_amd64.deb Size: 58492682 MD5sum: 9cb6fe028f75097d91220dae9145631a SHA1: 222227c33ac448cded2f2f9d5ce707ec4ed1618b SHA256: 80dc0bf6f5d7433f93325d47eac628fc455f2b6d2c10ae5f78f8874f42bea3f1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Its a variant effect predictor tool, it predicts the effect of genetic variations (SNPs, insertions, deletions and MNPs) License: unknown Vendor: Institut Pasteur Package: gensoft-snppar-0.4dev Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 290080 Depends: gensoft-fastml-3.11, gensoft-adm-python-3.8.1, gensoft-treetime-0.7.4 Filename: pool/main/gensoft-snppar-0.4dev_1.0_amd64.deb Size: 93633286 MD5sum: 1ae25ad2171d34ccccf18e28c3bf222d SHA1: ffe38bda665c02bd77aaed5b7ab62687aad162f2 SHA256: feb14608956f0ca76291453f16aea0bcd548a529f95d3cbed2cabba836eb1963 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SNPPar is designed to find homoplasic SNPs based on a user-defined phylogenetic tree License: unknown Vendor: Institut Pasteur Package: gensoft-snppar-1.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 353550 Depends: gensoft-fastml-3.11, gensoft-treetime-0.8.6, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-snppar-1.2_1.0_amd64.deb Size: 111417988 MD5sum: 7d32ca027e8fa48705612eac4f13d7d4 SHA1: 2bace7c13d334c8c2469198962b47f1ae4ed3030 SHA256: 86cc4f57650e4a7808b611d41b1fe89eeadbb976f8a583a54c57d1c9eb5cdde3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: SNPPar is designed to find homoplasic SNPs based on a user-defined phylogenetic tree - more specifically, it searches for those SNPs that are parallel - same mutation (eg. A ~> T) @ same position in two (or more) unrelated groups/isolates, convergent - different mutation in resulting in same base (eg. A ~> T, C ~> T) @ same position in two (or more) unrelated groups/isolates, and/or revertant - mutation back to ancestral state (eg. A ~> T ~> A) License: unknown Vendor: Institut Pasteur Package: gensoft-snpstore-1.3.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1125 Depends: gensoft-gcc-9.2.0, libc6, gensoft-zlib-1.2.11 Filename: pool/main/gensoft-snpstore-1.3.8_1.0_amd64.deb Size: 458778 MD5sum: 564f04e23b776cbde3f4d7d1de0e7152 SHA1: ba10dba4be1354e0625e0698b94e5f48f4792073 SHA256: b8591126940645ea28905276ee014c58dc779e7b52ad0b00c314cbfd5612cd96 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SnpStore is a program for SNP and indel calling in mapped next-generation sequencing read data. It features a simple threshold-based model for SNP and indel calling, and a MAQ-like Bayesian model for SNP genotype calling. Reads can optionally be realigned, using the ReAligner algorithm by Anson and Myers License: unknown Vendor: Institut Pasteur Package: gensoft-snptoolkit-2.2.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 627758 Depends: gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-snptoolkit-2.2.9_1.0_amd64.deb Size: 190442140 MD5sum: 0b44a1ebb5ba24284f4ca95a7d767b32 SHA1: fc10d11deb2606d09a4accebdd5c07d306387747 SHA256: 2fb86aed312b86201c896922e06b2b2413b4cedb9d433627beee1c62ae422c65 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: snpToolkit allows users to Visualize the content of their VCF files. Filter annotate SNPs based on multiple criteria. Analyse your data using two dimentionality reduction methodsr, PCA and UMAP. WARNING. this installation DES NOT embed explore, viz nor analyse components due to security reasons License: unknown Vendor: Institut Pasteur Package: gensoft-soap-2.21 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1260 Depends: libc6, zlib1g Filename: pool/main/gensoft-soap-2.21_1.0_amd64.deb Size: 544312 MD5sum: bdc27aeb698a069e84cc3c95c1fb4c36 SHA1: 1be5218af8bb901b86596117d3e278bbcbe6f269 SHA256: 5787908a760e21936776dd9e41baab2098b1b18685b4c3fdc1687d91e6def297 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Short oligonucleotide alignment License: unknown Vendor: Institut Pasteur Package: gensoft-soapdenovo-2.41 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1948 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-soapdenovo-2.41_1.0_amd64.deb Size: 895694 MD5sum: c25b86141c7325d34cba79e3779e75e4 SHA1: 25cb174182c0d2e8d6df82b5bc5bd92adcafc7cc SHA256: bf2c834fcd5596dc3bd26e99ef3f72a29d3d4760de7bf16a33095f9e4aafacee Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Short-read assembly method that can build a de novo draft assembly for the human-sized genomes License: unknown Vendor: Institut Pasteur Package: gensoft-soapindel-2.1.7.17 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1387 Depends: libc6, gensoft-gcc-9.2.0, gensoft-samtools-1.10, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-soapindel-2.1.7.17_1.0_amd64.deb Size: 464246 MD5sum: 51a6837e0122ecdd0e289a1a17e908bf SHA1: 69a2f4d03f5f586a217a91cd1c0fd36539086a0c SHA256: 93d33081b8cdbd2a5daf77e6f44d54c52c838278816b5cc82b64f258b1745d5e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SOAPindel is focusing on calling indels from the next-generation paired-end sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-socrates-1.13.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3778 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-socrates-1.13.1_1.0_amd64.deb Size: 3615700 MD5sum: 4f471b1c560060ee541721cc004c9097 SHA1: 7b3667b4f6a9cd5417b639cb4622389f54a1fe2b SHA256: 6009ed6bf39f2c21810cfc87c72d236c519898d0510920e4fc608b77999a1fa8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Socrates is a highly efficient and effective method for detecting genomic rearrangements in tumours that utilises split-read data. Socrates features single nucleotide resolution, high sensitivity, and high specificity in simulated data. It takes advantage of parallelism for efficient use of resources. License: unknown Vendor: Institut Pasteur Package: gensoft-socru-2.2.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 354412 Depends: zlib1g, gensoft-blast+-2.10.0, gensoft-adm-python-3.8.1, libc6, gensoft-barrnap-0.9, libbz2-1.0 Filename: pool/main/gensoft-socru-2.2.3_1.0_amd64.deb Size: 275397136 MD5sum: e680aa6ad82dc34efd981dd17e2393e3 SHA1: d31505c249793745ebb12625f6eb9a7022c802f1 SHA256: 85ab4f69317f7b1105085510a69ad5f634010c2298d1beefab3175188fbd68a2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Socru allows you to easily identify and communicate the order and orientation of complete genomes around ribosomal operons License: unknown Vendor: Institut Pasteur Package: gensoft-softsv-1.4.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 511 Depends: libc6-dev, gensoft-gcc-9.2.0, libc6, gensoft-libbam-2.5.1, gensoft-boost-1.72.0 Filename: pool/main/gensoft-softsv-1.4.2_1.0_amd64.deb Size: 250380 MD5sum: a513efc21aa822b84fbb3d7acdf82ced SHA1: e1e9efcaa5c6b7f8fb8dd395606c865a4e2c09cd SHA256: 86693b271e622fb0306d21c35a5c9e6e5896679ec5ccc3011a9dddc26c0bbe53 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool for the detection of small and large deletions, inversions, tandem duplications and translocations from paired-end sequencing data. It uses aberrant paired-end mappings to determine approximative breakpoint regions and refines the breakpoints by analysing soft-clipped sequences for potential split-reads. License: unknown Vendor: Institut Pasteur Package: gensoft-solar-8.5.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 40716 Filename: pool/main/gensoft-solar-8.5.1_1.0_amd64.deb Size: 13698082 MD5sum: a001666448ef8283241bcfc384800f17 SHA1: 7a7849fbd8e0941543d2f0bb5c3260036241d194 SHA256: f919d0bd2bd184d4dfcbbeec216c9852bf8915890570c3a8194bee98777a3299 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A package for genetic variance components analysis, including linkage analysis, quantitative genetic analysis, and covariate screening License: unknown Vendor: Institut Pasteur Package: gensoft-sonneityping-20210201 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 123706 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-sonneityping-20210201_1.0_amd64.deb Size: 38034206 MD5sum: 3659bd5d75e3cf81a7fdb9da14de7951 SHA1: 0663d856dd4970a88f390da67614b4e2e2311fd6 SHA256: 01092fe6534342930426a113e13b03c79285c8dead2a05dc04db145a28aee75c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: parses Mykrobe predict results for Shigella sonnei License: unknown Vendor: Institut Pasteur Package: gensoft-sortmerna-2.1b Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1150640 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-sortmerna-2.1b_1.0_amd64.deb Size: 514243352 MD5sum: ba53ab636bff5cbd7edd97b38fbf4970 SHA1: 0dbd7ac7caf150301ecfe91ef245713cd750c837 SHA256: 5ab9cc1843dea267a88e42c96a39259451f86da28f5d8b9685740b7fef887974 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. License: unknown Vendor: Institut Pasteur Package: gensoft-sortmerna-4.2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 8707 Depends: libc6 Filename: pool/main/gensoft-sortmerna-4.2.0_1.0_amd64.deb Size: 3492304 MD5sum: 3d92d3293601e8f6eafb85c9e76b7b0f SHA1: 7af6675e8b6b68b55f1fc20ec9dd670fc4ac90ae SHA256: 47f0a810df3f97e0a3c7e0cd932732ce2bab974e5d3ecf1766cf28a7dec24c44 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. License: unknown Vendor: Institut Pasteur Package: gensoft-sortmerna-4.3.4 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1013272 Depends: libc6 Filename: pool/main/gensoft-sortmerna-4.3.4_1.0_amd64.deb Size: 240307546 MD5sum: 4e15c72ea2d186186a4eb3959623cf7a SHA1: bcef57ffcf5fc92968322d3c82cf3e3868040253 SHA256: 5ddf11001984e990c2d12ad1b2a1a4012fbdfa0655952ee74252b7c2e4391575 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. License: unknown Vendor: Institut Pasteur Package: gensoft-sortmerna-4.3.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1016178 Depends: libc6 Filename: pool/main/gensoft-sortmerna-4.3.6_1.0_amd64.deb Size: 241394476 MD5sum: 29eba80e630b3fd717ecdaaa10aebb73 SHA1: 95022b8614aa424f7ca9e72f18c33ee616ff0df0 SHA256: ee976aa194a13fde8704373a3d3eaf4a394b7d5bbde049436cbae45d024ac2a0 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. License: unknown Vendor: Institut Pasteur Package: gensoft-souporcell-2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1 Depends: gensoft-singularity-3.8.1 Filename: pool/main/gensoft-souporcell-2.0_1.0_amd64.deb Size: 1924 MD5sum: 37af2b82e919ef04449d656828a8e35d SHA1: 06e42ce0c54cc8f2e6d6357ed8ae65f59d64bb2d SHA256: dde5f05e981df7d8739b3cbeccf494625613599da780bc314b4ac028cd052c26 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: souporcell is a method for clustering mixed-genotype scRNAseq experiments by individual. License: unknown Vendor: Institut Pasteur Package: gensoft-souporcell-2.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1506017 Depends: gensoft-apptainer-1.2.3 Filename: pool/main/gensoft-souporcell-2.5_1.0_amd64.deb Size: 1528923210 MD5sum: 4f4325c2b2fcd1fa18042244ce1d108a SHA1: 615450c5b9881873b10f0ed8820ebbdd92f35c82 SHA256: 8e67b5a83f26c0567bf707f2cef33193f80069bd677f3f3f7f7393794d6c4694 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: souporcell is a method for clustering mixed-genotype scRNAseq experiments by individual. License: unknown Vendor: Institut Pasteur Package: gensoft-sourcetracker-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 48 Depends: gensoft-r-3.6.2 Filename: pool/main/gensoft-sourcetracker-1.0.1_1.0_amd64.deb Size: 16130 MD5sum: 8e37cad481aa031bb42be5bbfb758531 SHA1: 6635bdd6e32b25e001d077e6db8e07796e7ee582 SHA256: 1494a2c62e614eef45e9ef9303be2a943104a4e49477c50bfec27b5e392c6282 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SourceTracker is a Bayesian approach to estimating the proportion of a novel community that comes from a set of source environments. License: unknown Vendor: Institut Pasteur Package: gensoft-sourmash-4.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 233165 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-sourmash-4.0.0_1.0_amd64.deb Size: 75723856 MD5sum: db872ae1fece8b6355f79609f33a2080 SHA1: 01710952655ceaacdc15d5c4b3b62ca867ed162e SHA256: a56612c0e29d5aab588bf70331bda25cf4cd2580cba7badf64f89aa2236cf7ef Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: sourmash is a command-line tool and Python library for computing hash sketches from DNA sequences, comparing them to each other, and plotting the results. This allows you to estimate sequence similarity between even very large data sets quickly and accurately. License: unknown Vendor: Institut Pasteur Package: gensoft-sourmash-4.4.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 291052 Depends: gensoft-adm-python-3.8.1, gensoft-gcc-12.3.0, zlib1g, libgcc-s1, libstdc++6, libc6 Filename: pool/main/gensoft-sourmash-4.4.0_1.0_amd64.deb Size: 92653160 MD5sum: 9526b67f71df025ef9ede3030295254f SHA1: f709dfa8d2b6f6187bcf175cbc87aa3768dbd531 SHA256: 9cfc454d97aaf277e9a1f34692a36144c7bedc8833ee70d60860e03302204a3b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: sourmash is a command-line tool and Python library for computing hash sketches from DNA sequences, comparing them to each other, and plotting the results. This allows you to estimate sequence similarity between even very large data sets quickly and accurately. License: unknown Vendor: Institut Pasteur Package: gensoft-sourmash-4.8.9 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 326743 Depends: libc6, libgcc-s1, gensoft-adm-python-3.10.7, gensoft-gcc-12.3.0, zlib1g, libstdc++6 Filename: pool/main/gensoft-sourmash-4.8.9_1.0_amd64.deb Size: 104632040 MD5sum: e78287bf2fafbaf7e130da7298ade416 SHA1: 7db064a9763c97c9186c9769556c4650d03ed7fe SHA256: a54d84384ca33b079fcda0b1fc8b9622703b6ea882aaa55fad1976b180eae3cf Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: sourmash is a command-line tool and Python library for computing hash sketches from DNA sequences, comparing them to each other, and plotting the results. This allows you to estimate sequence similarity between even very large data sets quickly and accurately. License: unknown Vendor: Institut Pasteur Package: gensoft-sourmash-4.9.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 375569 Depends: gensoft-adm-python-3.11.5, libgcc-s1, zlib1g, libstdc++6, gensoft-gcc-12.3.0, libc6 Filename: pool/main/gensoft-sourmash-4.9.4_1.0_amd64.deb Size: 120713096 MD5sum: 3777d750313ff764a1dacecedc6806a4 SHA1: 4d732af91d38a3d43ccf7d2a430ae6c4dcf6b2af SHA256: 24bfa1b43a6777ff35f7a01eb1faac2b20305836fd9d68d8f912920c382b2164 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: sourmash is a command-line tool and Python library for computing hash sketches from DNA sequences, comparing them to each other, and plotting the results. This allows you to estimate sequence similarity between even very large data sets quickly and accurately. License: unknown Vendor: Institut Pasteur Package: gensoft-spaceranger-1.2.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2510832 Filename: pool/main/gensoft-spaceranger-1.2.2_2.0_amd64.deb Size: 1227617040 MD5sum: ac9c24265bab25f7fafe754645d7ff93 SHA1: 4a87bba69c753b8348e8d49a4e50e4db2ad3d43a SHA256: 532047c0f70ce4ddccdcbf525f9caae6e4148575ffef6fc44a5b7d3df315a5a6 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a set of analysis pipelines that process Visium spatial RNA-seq output and brightfield and fluorescence microscope images in order to detect tissue, align reads, generate feature-spot matrices, perform clustering and gene expression analysis, and place spots in spatial context on the slide image. License: unknown Vendor: Institut Pasteur Package: gensoft-spaceranger-2.0.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2037062 Filename: pool/main/gensoft-spaceranger-2.0.1_2.0_amd64.deb Size: 702405176 MD5sum: f8931c41befc6b6cf107162d58f6a884 SHA1: 7854d5a66c5cbe9e7910576b69d773ee83f55949 SHA256: 4a756d0be7efdf3e72424e75c6ebcf99e5577f3123062d394c8c13b87f8f1797 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a set of analysis pipelines that process Visium spatial RNA-seq output and brightfield and fluorescence microscope images in order to detect tissue, align reads, generate feature-spot matrices, perform clustering and gene expression analysis, and place spots in spatial context on the slide image. License: unknown Vendor: Institut Pasteur Package: gensoft-spaceranger-3.0.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2269416 Filename: pool/main/gensoft-spaceranger-3.0.1_1.0_amd64.deb Size: 799532312 MD5sum: 60306043f995ff1cd6f69af12f43b6cb SHA1: c25839c4efaaa229a35a5137b23ff50989f0f0e3 SHA256: 188b35af38b0ecd198b65a95ebd17881b8798a1f91adf37b121bf812f92c0055 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a set of analysis pipelines that process Visium spatial RNA-seq output and brightfield and fluorescence microscope images in order to detect tissue, align reads, generate feature-spot matrices, perform clustering and gene expression analysis, and place spots in spatial context on the slide image. License: unknown Vendor: Institut Pasteur Package: gensoft-spades-3.14.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 45835 Depends: zlib1g, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17, libc6 Filename: pool/main/gensoft-spades-3.14.0_2.0_amd64.deb Size: 17846662 MD5sum: 49993ec92a1c7737ba6484cd47b891b9 SHA1: 0c0837b19fe78aa616e8616dec358e1d732b4383 SHA256: 70c612eecedce3b9067ac0f4b0f7a02298a09dfadf93948100d030be201a0230 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Assembler intended for both standard isolates and single-cell MDA bacteria assemblies License: unknown Vendor: Institut Pasteur Package: gensoft-spades-3.14.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 46046 Depends: zlib1g, libc6, gensoft-gcc-9.2.0, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-spades-3.14.1_2.0_amd64.deb Size: 17905954 MD5sum: eff8fd5267c6c36087c8da252a4e880f SHA1: 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Squirrel provides a rapid way of producing reliable alignments for MPXV and also enable maximum-likelihood phylogenetics pipeline tree estimation.", License: unknown Vendor: Institut Pasteur Package: gensoft-squizz-0.99c Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 4638 Depends: libc6 Filename: pool/main/gensoft-squizz-0.99c_1.0_amd64.deb Size: 1603162 MD5sum: 1e29eae4b9a0a2e7cffa6a2854823fad SHA1: f96d6c6b0242c9f09461a27b0174589ed84c091c SHA256: c715efe772fcd06201815c5cd2aeb2d31e8c162058bdfac4f328df8841f57490 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Sequence/Alignment format checker License: unknown Vendor: Institut Pasteur Package: gensoft-sra-sdk-2.10.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 199132 Depends: gensoft-libiconv-1.16, gensoft-xz-5.2.4, libc6 Filename: pool/main/gensoft-sra-sdk-2.10.2_1.0_amd64.deb Size: 81319468 MD5sum: 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libraries for using data in the INSDC Sequence Read Archives License: unknown Vendor: Institut Pasteur Package: gensoft-sra-tools-3.2.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1150973 Depends: libbz2-1.0, gensoft-libxml2-2.9.10, libc6, gensoft-xz-5.2.5, gensoft-hdf5-1.10.6, gensoft-libiconv-1.16, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-sra-tools-3.2.0_1.0_amd64.deb Size: 396688988 MD5sum: 2e14571bbdcf9260f14f23645c6edd75 SHA1: 8c2fb8fb78136c90035e591f3cd9270a8f8b6e9b SHA256: 155e758e37cd996baafcc37582cb449a32a4c45e244bbcfa09d0e2a435f2ea00 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives License: unknown Vendor: Institut Pasteur Package: gensoft-srprism-2.4.24 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1571 Depends: libc6, gensoft-gcc-9.2.0, zlib1g, libbz2-1.0 Filename: pool/main/gensoft-srprism-2.4.24_1.0_amd64.deb Size: 538788 MD5sum: 12fb5d6353f317f97f96fe7ac828f650 SHA1: 72929ec47398465fb74b5b5ab39ee424197315f4 SHA256: 276ed6c5be5df2c95988a8be2a4987aebd65c3721a24d8402c6fd8a34f313ec5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Single Read Paired Read Indel Substitution Minimizer License: unknown Vendor: Institut Pasteur Package: gensoft-srst2-0.2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 190359 Depends: gensoft-samtools-0.1.18, gensoft-r-3.6.2, gensoft-adm-python-2.7.17, libstdc++6, libgcc-s1, gensoft-bowtie2-2.1.0, libc6 Filename: pool/main/gensoft-srst2-0.2.0_1.0_amd64.deb Size: 54642176 MD5sum: 565626e87662f5dc82eb00c8ca13bd2d SHA1: 0af0f31dfdd2d01e6266e62082241f70ab60b965 SHA256: f7c17e874f8c825f2f30a4c0d4e5f5b20a30e3a9ee1b8d16dce3b412c25d8b67 Section: default Priority: extra Homepage: 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License: unknown Vendor: Institut Pasteur Package: gensoft-ssaha2-2.5.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2496 Depends: libc6 Filename: pool/main/gensoft-ssaha2-2.5.5_1.0_amd64.deb Size: 1170334 MD5sum: ec3b079b6769389ceb8f1b71f6983726 SHA1: 8cfa67bccae8b44e9cea3e21f6cbc3e5b4452439 SHA256: d951cd8f4d537b180ec212af26f0ac11435447723f58b90d672aac5f8b90f599 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A pairwise sequence alignment program designed for the efficient mapping of sequencing reads onto genomic reference sequences License: unknown Vendor: Institut Pasteur Package: gensoft-sshash-3.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 28495 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-sshash-3.0.0_1.0_amd64.deb Size: 6202620 MD5sum: 3a69a0ffdf36749aa2a9862641c2e7c1 SHA1: 492bec6fd5690be602fbd2f5667a782785edfe0a SHA256: 2c9ff1c1abd5c0b07f1125df920691f3dbd96d8d6b59318d1c104fb769362b50 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A compressed, associative, exact, and weighted dictionary for k-mers. 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License: unknown Vendor: Institut Pasteur Package: gensoft-ssw-1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 182 Depends: zlib1g, libc6 Filename: pool/main/gensoft-ssw-1.1_1.0_amd64.deb Size: 56474 MD5sum: 07970f3a7ba858fd9a02377a6588aa4a SHA1: 8dd872473724cef96b0594b09e5be7abe5622ed9 SHA256: 75b832fce49faa096ea691888dc0fe71263e9e903fb8045428d89fb5bc810a33 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. 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License: unknown Vendor: Institut Pasteur Package: gensoft-star-2.7.8a Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6266 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-star-2.7.8a_2.0_amd64.deb Size: 2480128 MD5sum: d3f8195128a051e479e37a866c6518d6 SHA1: c4bc029670bba837065065f50c367dea0d1330c9 SHA256: c777edb2131d81681e0c854a10af6e5502a16015fd74125e5ab48c9cb7e4e2f9 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: aligns RNA-seq reads to a reference genome using uncompressed suffix arrays. License: unknown Vendor: Institut Pasteur Package: gensoft-star-2.7.9a Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6330 Depends: zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-star-2.7.9a_2.0_amd64.deb Size: 2510998 MD5sum: c4268448f812403ded2d9856a3fc855f SHA1: e4d4ba730186f8c47e1622fa6371cf39476e7926 SHA256: 5b33efa8abca69b915baf841cabe8d31eb2a56d2300342703e3570522838f584 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: aligns RNA-seq reads to a reference genome using uncompressed suffix arrays. License: unknown Vendor: Institut Pasteur Package: gensoft-staramr-0.10.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 183347 Depends: gensoft-adm-python-3.8.1, libstdc++6, zlib1g, libc6, gensoft-mlst-2.23.0, gensoft-blast+-2.14.1, libgcc-s1 Filename: pool/main/gensoft-staramr-0.10.0_1.0_amd64.deb Size: 55853190 MD5sum: 23a6ba2da5ac920c0b9d632a19b7653d SHA1: 7747a530f1d4a3c55f7670963fc148b313044cf2 SHA256: 409edf3db329e46033762431c30217a3c141beb18b02a5a98f0109b5e139addc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: staramr (*AMR) scans bacterial genome contigs against the ResFinder, PointFinder, and PlasmidFinder databases and compiles a summary report of detected antimicrobial resistance genes. License: unknown Vendor: Institut Pasteur Package: gensoft-steme-1.9.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 143298 Depends: gensoft-fftw-3.3.8, libc6, gensoft-ghostscript-9.50, gensoft-adm-python-2.7.17, gensoft-gcc-9.2.0, gensoft-boost-1.72.0, libgcc-s1, libstdc++6 Filename: pool/main/gensoft-steme-1.9.6_1.0_amd64.deb Size: 44403036 MD5sum: 6fba1f83ab31dd11f893355294c6e808 SHA1: 4fc15c70842c95f812e0bb98d3e4b227edebac0a SHA256: e8c0ba67ae2b562e481859e25490914b3cec1ab45e7f6d680be74e4c46a97ce7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: STEME started life as an approximation to the Expectation-Maximisation algorithm for the type of model used in motif finders such as MEME. STEME s EM approximation runs an order of magnitude more quickly than the MEME implementation for typical parameter settings. STEME has now developed into a fully-fledged motif finder in its own right. License: unknown Vendor: Institut Pasteur Package: gensoft-streamvbyte-0.5.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 91 Depends: libc6 Filename: pool/main/gensoft-streamvbyte-0.5.1_1.0_amd64.deb Size: 22272 MD5sum: 568918193bc5cb73ab8c5b3db2ea8104 SHA1: 3e355ad280c194b802ed0387c5a3a554c7ca2ecf SHA256: 5284ebaa7dea5fa24df523e9fb5bfc62ccd787bcf50cf1213fb0bbdb676ac03f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Fast integer compression in C using the StreamVByte codec License: unknown Vendor: Institut Pasteur Package: gensoft-strelka-2.9.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 252447 Depends: gensoft-adm-python-2.7.17, gensoft-gcc-9.2.0, libc6, zlib1g Filename: pool/main/gensoft-strelka-2.9.10_1.0_amd64.deb Size: 76925614 MD5sum: 78031521b04e4417886674897e99c10e SHA1: 298aa507727b78d76a23a4b3add9b096cd2d74bb SHA256: a7601b0c45e1454f9e9ce5a84e4ccfcbd84e7ba7a1b9a87d4b15268120234249 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Strelka is an analysis package designed to detect somatic SNVs and small indels from the aligned sequencing reads of matched tumor-normal samples. License: unknown Vendor: Institut Pasteur Package: gensoft-stringtie-2.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6828 Depends: zlib1g, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-stringtie-2.1.1_1.0_amd64.deb Size: 2221152 MD5sum: bcf79c0c6bd55a81dbb45a86e9080880 SHA1: 3513e46543d5e26f4538dacf0b08ca5c83c1f9f2 SHA256: 01d9728653b40177ea2d7f024066f55437909670ae1a5b83e4945c89ab2740b5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representing multiple splice variants for each gene locus. License: unknown Vendor: Institut Pasteur Package: gensoft-stringtie-2.2.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 13118 Depends: gensoft-gcc-9.2.0, libc6, zlib1g Filename: pool/main/gensoft-stringtie-2.2.3_1.0_amd64.deb Size: 4269104 MD5sum: 09eebf00dc5f5b5e5aeab5298aedd8fc SHA1: 076be6dfd700231497be67945f7772314781ef2a SHA256: a8de32572e968e2abded863dd798aaeb18ef905402ca6a9d30205ea1ec228042 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representing multiple splice variants for each gene locus. License: unknown Vendor: Institut Pasteur Package: gensoft-stringtie-3.0.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 13722 Depends: libc6, gensoft-gcc-9.2.0, zlib1g Filename: pool/main/gensoft-stringtie-3.0.0_1.0_amd64.deb Size: 4472728 MD5sum: 7377afaf47e9688d59674689ed14e59a SHA1: 21f4417e08a8c904c7a4b0e434072c835dc38ae0 SHA256: 05e19fb98ce1ebda4adc1264d81e9325ab4ec1d31b11fee323de72714f9efb39 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representing multiple splice variants for each gene locus. License: unknown Vendor: Institut Pasteur Package: gensoft-structure-2.3.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2300 Depends: libc6, gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-structure-2.3.4_1.0_amd64.deb Size: 1973312 MD5sum: 74d4faa56befbdaa4b4f5bd3189d8434 SHA1: ed75640c1b3d86963d23afbf35f427e0f446234a SHA256: 8c656accfafa9e01a104c4fe02cf994147f0c0d88ab241ee2bf620a8ace6082f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The program structure is a free software package for using multi-locus genotype data to investigate population structure. License: unknown Vendor: Institut Pasteur Package: gensoft-stxxl-1.4.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 8852 Depends: gensoft-zstd-1.4.4, gensoft-gcc-9.2.0, zlib1g, libc6, gensoft-xz-5.2.4, gensoft-boost-1.54.0, libbz2-1.0 Filename: pool/main/gensoft-stxxl-1.4.1_1.0_amd64.deb Size: 1965404 MD5sum: f2f38ae1760ea5cbd8d481242d740b1d SHA1: a6a3862a1206a3cb6bca6ee18997d68edaf606a1 SHA256: 3843782486b94e2285e9e08767b10f824ef2ee23acc9312e903048edd4e9991d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Standard Template Library for Extra Large Data Sets. License: unknown Vendor: Institut Pasteur Package: gensoft-subread-2.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 72529 Depends: libc6, zlib1g Filename: pool/main/gensoft-subread-2.0.0_1.0_amd64.deb Size: 24465994 MD5sum: ffabcbb05c4c2ceadbdb950e852a713f SHA1: 542e7566842f7f29cd00f151082f6186fdb8d783 SHA256: 00e0000897daa1782eab11e54fe393bbbb88a405dc08769a2670b842faba3f8a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: high-performance read alignment, quantification and mutation discovery. The Subread package comprises a suite of software programs for processing next-gen sequencing read data License: unknown Vendor: Institut Pasteur Package: gensoft-suitesparse-5.6.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 7161 Depends: gensoft-openblas-0.3.7, gensoft-gcc-9.2.0, libc6, gensoft-atlas-3.10.2 Filename: pool/main/gensoft-suitesparse-5.6.0_1.0_amd64.deb Size: 4300206 MD5sum: f54a2e53febcaf2bce9a93539f2ee0d7 SHA1: b5e8413508b75cc699a76b9c581467ff116d0701 SHA256: b45830c79bcb09abecdb45eae5345abc5cdcc03a6927f571d09d4ca51e0a227d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SuiteSparse is a suite of sparse matrix algorithms, including UMFPACK multifrontal LU factorization. CHOLMOD supernodal Cholesky. SPQR multifrontal QR. KLU and BTF sparse LU factorization, well-suited for circuit simulation. Ordering methods (AMD, CAMD, COLAMD, and CCOLAMD). CSparse and CXSparse a concise sparse Cholesky factorization package for my SIAM book. UFget a MATLAB interface for the UF Sparse Matrix Collection spqr_rank a MATLAB package for reliable sparse rank detection, null set bases, pseudoinverse solutions, and basic solutions. Factorize an object-oriented solver for MATLAB (a reusable backslash). SSMULT and SFMULT sparse matrix multiplication. And many other packages License: unknown Vendor: Institut Pasteur Package: gensoft-suitesparse-7.8.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 155337 Depends: gensoft-openblas-0.3.7, gensoft-gmp-6.2.0, gensoft-gcc-9.2.0, gensoft-mpfr-4.0.2, libc6 Filename: pool/main/gensoft-suitesparse-7.8.3_1.0_amd64.deb Size: 61426886 MD5sum: e85fac6bcee29391272f3b8234f70823 SHA1: ab50b530abd0b1811ed616aea25777a4c60484a0 SHA256: 7baaab23492248df7c816dc3fd20fb5b65db68bdf3d933d6443015546cf2b214 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: SuiteSparse is a suite of sparse matrix algorithms, including UMFPACK multifrontal LU factorization. CHOLMOD supernodal Cholesky. SPQR multifrontal QR. KLU and BTF sparse LU factorization, well-suited for circuit simulation. Ordering methods (AMD, CAMD, COLAMD, and CCOLAMD). CSparse and CXSparse a concise sparse Cholesky factorization package for my SIAM book. UFget a MATLAB interface for the UF Sparse Matrix Collection spqr_rank a MATLAB package for reliable sparse rank detection, null set bases, pseudoinverse solutions, and basic solutions. Factorize an object-oriented solver for MATLAB (a reusable backslash). SSMULT and SFMULT sparse matrix multiplication. And many other packages License: unknown Vendor: Institut Pasteur Package: gensoft-suma-package-v1.0.34 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 311 Depends: zlib1g, libc6 Filename: pool/main/gensoft-suma-package-v1.0.34_1.0_amd64.deb Size: 212002 MD5sum: 3488b2ba144296452f5860a76d170464 SHA1: 13f857844748e04fc5ccd30a57749f5a27ff98f8 SHA256: 0bae88519ec2dcddc5b200eb6648449b8ea06770579254e2ed4ebfc7a7087933 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SUMATRA and SUMACLUST fast and exact comparison and clustering of sequences. SUMACLUST and SUMATRA aim to compare sequences in a way that is fast and exact at the same time. These tools have been developed to be adapted to the type of data generated by DNA metabarcoding, i.e. entirely sequenced, short markers. License: unknown Vendor: Institut Pasteur Package: gensoft-superfold-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 113743 Depends: libgcc-s1, gensoft-adm-python-2.7.17, libc6, gensoft-rnastructure-6.3, libstdc++6 Filename: pool/main/gensoft-superfold-1.0_1.0_amd64.deb Size: 37447992 MD5sum: 604b6b633e60d51fe1ce2a9fa2e79918 SHA1: 9070a251d11bc617712bcdcc0c161a63a5e295a1 SHA256: 35a807626d884fb56d20523f551339eb6fc2e778610c9725e416ada0940a6888 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SuperFold is a pipeline that then uses these data to model RNA secondary structures, including pseudoknots; identify de novo regions with well-defined and stable structures; and visualize most probable and alternative helices. License: unknown Vendor: Institut Pasteur Package: gensoft-svclone-0.4.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 340705 Depends: gensoft-adm-python-2.7.17, gensoft-gcc-9.2.0, gensoft-r-3.6.2, gensoft-xz-5.2.4, gensoft-libxml2-2.9.10, gensoft-curl-7.68.0, gensoft-libiconv-1.16, gensoft-libgit2-0.28.4, gensoft-libssh2-1.9.0 Filename: pool/main/gensoft-svclone-0.4.0_1.0_amd64.deb Size: 114176358 MD5sum: e70c5f687108316107c7dd70d06cf155 SHA1: 0780981fdf26a76d8c7e24a10bf7ce8e9968439d SHA256: ca71e64f1924e8d786044054c1d8b5cc0e3217a788e8d5ea25a9db56aef0fead Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-svrtk-d227368 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 144111 Depends: gensoft-tbb-2020.1, gensoft-adm-python-3.8.1, gensoft-gcc-9.2.0, gensoft-arpack-ng-3.7.0, gensoft-openblas-0.3.21, gensoft-atlas-3.10.2, gensoft-libpng-1.6.37, gensoft-boost-1.81.0, gensoft-suitesparse-7.8.3, gensoft-vtk-8.2.0 Filename: pool/main/gensoft-svrtk-d227368_1.0_amd64.deb Size: 39180836 MD5sum: 0bad82af5743f48acefe450467fdbdeb SHA1: 93b3af0200b5cc2ce79b6f7505a69d41404d9f40 SHA256: 09c5efa785864a77dcc788ea4410672be56c39e13d3cd9d61e75a89149db7318 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: MIRTK based Slice to Volume Reconstruction Toolkit License: unknown Vendor: Institut Pasteur Package: gensoft-svseq2-2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 301 Depends: gensoft-gcc-9.2.0, gensoft-libbam-0.1.19, libc6, zlib1g Filename: pool/main/gensoft-svseq2-2_1.0_amd64.deb Size: 129796 MD5sum: 9882b90b30bc8f320b81bc82fc655006 SHA1: 9ee7c49d05b663e568ed19e3b4fe10067393f0c1 SHA256: fcd54a2b02600efb7144e3705059d59ecc420e5f6338dbc214c1a3c18cbe28ba Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data. License: unknown Vendor: Institut Pasteur Package: gensoft-svtyper-0.7.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 255136 Depends: gensoft-r-3.6.2, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-svtyper-0.7.1_1.0_amd64.deb Size: 74125878 MD5sum: 34d80b3ba641e2f98916fddc21f79188 SHA1: 4da160d35cf4947b06f00fd912f4e0b362465ce0 SHA256: b19704b08ce2b29a62be3d84bfb8bafa467410e888e8ffd36edaabf39426f58c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Bayesian genotyper for structural variants License: unknown Vendor: Institut Pasteur Package: gensoft-swarm-3.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 20236 Depends: libc6, zlib1g, gensoft-gcc-9.2.0, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-swarm-3.0.0_1.0_amd64.deb Size: 6953984 MD5sum: 71a5198de8204daa8821c09c0e5ce07f SHA1: 386063b6c818dcb97aceb114920672c49d8c78d5 SHA256: eb7138a87d0315f3de93daef60f8ae97640effbdc866aea432dceeab4a6fcab6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A robust and fast clustering method for amplicon-based studies. The purpose of swarm is to provide a novel clustering algorithm to handle large sets of amplicons. Traditional clustering algorithms results are strongly input-order dependent, and rely on an arbitrary global clustering threshold. swarm results are resilient to input-order changes and rely on a small local linking threshold the maximum number of differences between two amplicons. swarm forms stable high-resolution clusters, with a high yield of biological information. License: unknown Vendor: Institut Pasteur Package: gensoft-sweed-4.0.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 643 Depends: gensoft-gmp-6.2.0, gensoft-mpfr-4.0.2, libc6 Filename: pool/main/gensoft-sweed-4.0.0_1.0_amd64.deb Size: 416056 MD5sum: f3b47b90b5baf3a05e249d624d1f53a5 SHA1: 3182149c7682d9905bbcff2f81c7da1ac90c3a1c SHA256: ddd44b6a74f4862938024b8c7a486753e140897fe643c5cf5e9430f5c8a14931 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SweeD implements a composite likelihood ratio test which detects complete selective sweeps using Site Frequency Spectrum (SFS) patterns of single-nucleotide polymorphisms (SNPs). License: unknown Vendor: Institut Pasteur Package: gensoft-swig-4.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 45656 Depends: libc6, gensoft-gcc-9.2.0, gensoft-pcre-8.43, zlib1g Filename: pool/main/gensoft-swig-4.0.1_1.0_amd64.deb Size: 11006550 MD5sum: 7bb525c2687802a0a688bf500829d0e8 SHA1: cd338a321ff63638ac6798a64d114cfaf9493691 SHA256: 86eb7264a8c13dcda62d1f1f3e5d5721a2024deea74fe9e116e90aa608327357 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a software development tool that connects programs written in C and C++ with a variety of high-level programming languages. License: unknown Vendor: Institut Pasteur Package: gensoft-swipe-2.1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1111 Depends: gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-swipe-2.1.1_1.0_amd64.deb Size: 363340 MD5sum: d9155af28a16061d7f79b38d8e531f75 SHA1: 2c1aaa5deb34dc7bf1db2fffc6019067ba1fda3a SHA256: 4ba10e5d9bdac7c32906f3f7a55144897b84a47bc9f6a884422474c006db7be4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Smith-Waterman database searches with inter-sequence SIMD parallelisation License: unknown Vendor: Institut Pasteur Package: gensoft-sword-1.0.4 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1804 Depends: libc6 Filename: pool/main/gensoft-sword-1.0.4_1.0_amd64.deb Size: 398230 MD5sum: b5e6c1495f94c60ed015fb282105f870 SHA1: a47d388404683f2de223ac15b075faddc90733a4 SHA256: 8aa84093dafe9d38320f6a0dc0d6329d4c44268224b4eccda56cacaa67705842 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SWORD (Smith Waterman On Reduced Database) is a fast and sensitive software for protein sequence alignment. License: unknown Vendor: Institut Pasteur Package: gensoft-symphony-5.6.17 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 964 Depends: gensoft-glpk-4.65, gensoft-dylp-1.10.4, gensoft-lapack-3.9.0, gensoft-clp-1.17.6, libc6, gensoft-vol-1.5.4, gensoft-osi-0.108.6, gensoft-coinutils-2.11.4, gensoft-gcc-9.2.0, gensoft-cgl-0.60.3 Filename: pool/main/gensoft-symphony-5.6.17_1.0_amd64.deb Size: 401820 MD5sum: f2d2b54c33e915922517f1e42aaad36b SHA1: e68134075bbaa9516637ed397b6c71d54dd30bd7 SHA256: 4d5e864992bbe0a9830393e7502d914d089f4905f9460eda470a5eca327995f6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: SYMPHONY is an open-source solver, callable library, and development framework for mixed-integer linear programs (MILPs) written in C with a number of unique features License: unknown Vendor: Institut Pasteur Package: gensoft-syntviewtools-0.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 24 Depends: gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-syntviewtools-0.0.1_1.0_amd64.deb Size: 9764 MD5sum: 2b8ae92d751d0c45a8dfc81b1e9799f6 SHA1: b8ccb34e31dd076a6b37f14b41845fa2a4b813e4 SHA256: e855506a8153846cfa9f184b61bc0814c92e8fed254bfa7e7184d0676b382d57 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Specific tools for pre-processing datas in order to use them in SynTView License: unknown Vendor: Institut Pasteur Package: gensoft-sz-2.1.12.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 7423 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-sz-2.1.12.5_1.0_amd64.deb Size: 2830586 MD5sum: 872f450faedb4c0e8012c3ba824d40f0 SHA1: 71b9df9611b130809ee87442d600ac64beb135ec SHA256: df850fcbf62f2be883432e5d4071134e837e5fb6f5fd7b13a0956b3dfe6674f4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Error-bounded Lossy Data Compressor (for floating-point/integer datasets) License: unknown Vendor: Institut Pasteur Package: gensoft-szip-2.1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 121 Depends: libc6 Filename: pool/main/gensoft-szip-2.1.1_1.0_amd64.deb Size: 46872 MD5sum: b15e3dbb3605419b7c48445cc2b7b605 SHA1: 5a80be3c93e873b6fea35f292f7a924cc987c283 SHA256: 434aff5d9494efb365aea748dd3b28f20f06acae458cb9302603fdddba1d62a1 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: SZIP compression library. License: unknown Vendor: Institut Pasteur Package: gensoft-tabix-0.2.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1438 Depends: zlib1g, libc6, gensoft-adm-perl-5.30.1, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-tabix-0.2.6_1.0_amd64.deb Size: 590420 MD5sum: ff7bf096764b6eeed3ad08527cbc27d4 SHA1: ca1f1b4e2854ccc71ca8b1d8e5a4e431ef7382fd SHA256: 4e7ffb03bd33e8d7f959797b262f8f79f0d6c9506bd930342623986f2fa70400 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Generic indexer for TAB-delimited genome position files bgzip Block compression/decompression utility License: unknown Vendor: Institut Pasteur Package: gensoft-tabixpp-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 988 Depends: gensoft-htslib-1.10, libssl1.1, zlib1g, gensoft-curl-7.68.0, libc6, libbz2-1.0, gensoft-xz-5.2.4, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-tabixpp-1.1.0_1.0_amd64.deb Size: 259236 MD5sum: 3e938fda1b293adeca5f1fd205dee379 SHA1: ae2925dde15a824667917aa72f6c1b78b70ccd57 SHA256: 30346bbcf134fe80f626aa0840f514ae864b1df37974b00416c65cc3802a1ac4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This is a C++ wrapper around tabix project which abstracts some of the details of opening and jumping in tabix-indexed files. installed version built on top of htslib/1.9 License: unknown Vendor: Institut Pasteur Package: gensoft-tabixpp-1.1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 994 Depends: gensoft-curl-7.68.0, libssl1.1, gensoft-htslib-1.10, gensoft-gcc-9.2.0, zlib1g, libc6, gensoft-xz-5.2.5, libbz2-1.0 Filename: pool/main/gensoft-tabixpp-1.1.1_1.0_amd64.deb Size: 261766 MD5sum: 8401c2d58985ae6a653643a595e57d7e SHA1: 007c87feb0588fef2ffa0511655cf4db2e6805a5 SHA256: 494d508bfa5d77238ca41e33ab65f7b967e1201c395b05f60cc0d6a7c9004e1a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: This is a C++ wrapper around tabix project which abstracts some of the details of opening and jumping in tabix-indexed files. installed version built on top of htslib/1.9 License: unknown Vendor: Institut Pasteur Package: gensoft-tabixpp-1.1.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 996 Depends: gensoft-htslib-1.10, libc6, gensoft-curl-7.68.0, gensoft-gcc-9.2.0, gensoft-xz-5.2.5, libbz2-1.0, zlib1g, libssl1.1 Filename: pool/main/gensoft-tabixpp-1.1.2_1.0_amd64.deb Size: 262374 MD5sum: 2d7a2f0df984688ef0731c56d912aee0 SHA1: 748388adddabbd9d32716e05359316dc06a1021e SHA256: 2ba6a8565fb001d046695fcfd8e3fa444dd530a2fb1060b5d00db8a74c9d85e6 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: This is a C++ wrapper around tabix project which abstracts some of the details of opening and jumping in tabix-indexed files. installed version built on top of htslib/1.9 License: unknown Vendor: Institut Pasteur Package: gensoft-tacg-4.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1866 Depends: gensoft-ghostscript-9.50, libc6, gensoft-pcre-8.43 Filename: pool/main/gensoft-tacg-4.1.0_1.0_amd64.deb Size: 667426 MD5sum: 9794c5a03abc1eccc76d483c1feb18b5 SHA1: fee1af29d1436c7f528fc9fbadedccb0dc33b58b SHA256: 95d269d30d8d54e11ee574788eeffc256d592376ba8008e8a56c2fca9d80f83e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Finds short patterns and specific combinations of patterns in nucleic acids, translates DNA vs protein License: unknown Vendor: Institut Pasteur Package: gensoft-tama-2fa3c30 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 135570 Depends: liblzma5, libbz2-1.0, zlib1g, libc6, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-tama-2fa3c30_1.0_amd64.deb Size: 38409046 MD5sum: 58e0eb75b25a6ec9cfa7514e24992635 SHA1: fdd6a96724842d9ffaa235284b35f5fe91918b83 SHA256: cc2f1e2b19032bae77069fb577692e0ef9805e72782bf3295aef187684a06db8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data) License: unknown Vendor: Institut Pasteur Package: gensoft-tangram-0.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 41714 Depends: gensoft-adm-python-2.7.17, zlib1g, libc6, gensoft-gcc-9.2.0, gensoft-bedtools-2.29.2, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-tangram-0.3.1_1.0_amd64.deb Size: 11994836 MD5sum: 6681d3221209c6232aee41f854655002 SHA1: 4fb106c5fe4a228ddf6eeffa66e0e97dc410b9f6 SHA256: d74e743ff6223831267cc2ea539cf8b5220666bd0f7a84802a00666b4692ab07 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Fast Structural Variation Detection Toolbox License: unknown Vendor: Institut Pasteur Package: gensoft-taxadb-0.12.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 14253 Depends: gensoft-sqlite-3.31.0, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-taxadb-0.12.0_1.0_amd64.deb Size: 4222116 MD5sum: 539d31bc5b6e31d541034a9920b682f4 SHA1: 2223a9de46ee72b144aea59f6873acadbfaf75f6 SHA256: 1007674000b0d7bb49e8faa5f159947c81106a469a1d0e94d4d0073732ec7afb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Taxadb is an application to locally query the ncbi taxonomy License: unknown Vendor: Institut Pasteur Package: gensoft-taxator-tk-1.5.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 9727 Depends: gensoft-gcc-9.2.0, gensoft-last-1180, gensoft-orfm-0.7.1, gensoft-adm-python-2.7.17, gensoft-boost-1.72.0, gensoft-lz4-1.9.2, libc6, gensoft-icu-65.1, zlib1g, gensoft-blast+-2.12.0 Filename: pool/main/gensoft-taxator-tk-1.5.0_1.0_amd64.deb Size: 2969810 MD5sum: 7742d9922db49c6aab8c966eee8a0695 SHA1: a7d93130aa1dda88dceb636a61cbfaa8f52a2008 SHA256: 74e4a5a8a0d3d01c8340c411b05696a8fbabeb137f3542527353c817d5c2c0fa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A set of programs for the taxonomic analysis of genetic sequences License: unknown Vendor: Institut Pasteur Package: gensoft-taxo-rrna-1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 12608 Depends: libc6, gensoft-adm-python-2.7.17, gensoft-db-5.3.28 Filename: pool/main/gensoft-taxo-rrna-1.1_1.0_amd64.deb Size: 3733622 MD5sum: 713d87b886f9bf55e058b6adabf7a567 SHA1: 4c87a08219e02df48efa4bea231171608bf14fbc SHA256: 250f7abb05d75406b3171a073257e56338eb1134a71fb5fa7b949996fa7efee6 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Simple python program used to format Silva and Greengenes 16S databases License: unknown Vendor: Institut Pasteur Package: gensoft-taxodb-ncbi-1.3.4.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 12658 Depends: gensoft-db-5.3.28, gensoft-adm-python-2.7.17, libc6 Filename: pool/main/gensoft-taxodb-ncbi-1.3.4.1_1.0_amd64.deb Size: 3749426 MD5sum: 13d5f1d5357a9194857aaeff7051b6ef SHA1: 2481859dfc6583987ba3f3b270f65bfefb507b8d SHA256: 6323b966e5bb073888c76998e4a8895d3d621bf0cb92e5137786559e729a422b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Simple python program used to format NCBI Taxonomy Database License: unknown Vendor: Institut Pasteur Package: gensoft-taxonkit-0.20.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 15627 Depends: libc6 Filename: pool/main/gensoft-taxonkit-0.20.0_1.0_amd64.deb Size: 8733458 MD5sum: f778eb9ee84016cad2b40e956545580a SHA1: a5280661a539d651716655bbba684c5dd407d54c SHA256: dfd595606b560087ffcba4d1f38b4f65637e9c75177d26f332d218729f114d03 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV License: unknown Vendor: Institut Pasteur Package: gensoft-taxonomy-97aef0c05300 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 104 Depends: libc6 Filename: pool/main/gensoft-taxonomy-97aef0c05300_1.0_amd64.deb Size: 41600 MD5sum: cab7dd5d88a72ddddcf77a3413e3ad72 SHA1: 7ddfb9811e13257eb2d4cedd3e3f741ec19d4f53 SHA256: a0045901407a5ed60bb51a234ae19b7c7b4efc2be54d75623fe6f3d328309fc3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: gb_taxonomy tools known to work with Galaxy tool definitions License: unknown Vendor: Institut Pasteur Package: gensoft-taxoptimizer-2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 13047 Depends: gensoft-xz-5.2.4, gensoft-blasttaxoanalysis-1.0, libc6, gensoft-zlib-1.2.11, gensoft-libjpeg-turbo-2.0.4, gensoft-xorg-libs-1.1, gensoft-libgd-gd-2.2.5, gensoft-db-5.3.28, gensoft-golden-3.4.1, gensoft-libtiff-4.1.0, gensoft-expat-2.2.9, gensoft-giflib-5.2.1, gensoft-adm-python-2.7.17, gensoft-fontconfig-2.13.91, gensoft-libpng-1.6.37, gensoft-freetype-2.10.1 Filename: pool/main/gensoft-taxoptimizer-2.0_1.0_amd64.deb Size: 3849934 MD5sum: 1dc19007563cf6ac77ae6e5e389f0ddb SHA1: dab5bf586abbeb9b1d436b8cd8ee6390cdd3eb92 SHA256: 678ab81802cc36256a184a88981568a2cb7ca3b37b3ea5913c234ce0b6175fbb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Taxonomy tools to analyse BLAST Hits. License: unknown Vendor: Institut Pasteur Package: gensoft-tbb-2020.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6627 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-tbb-2020.1_1.0_amd64.deb Size: 2035506 MD5sum: 56d2a2df288513fa9d5dd773293dd49f SHA1: c60cfc1d0f3abe53b858e55559b2738329f786c1 SHA256: 5e20c56f8ccaea1729f96fb5c08a2914b3efd63a240c8e217c1e7ab9a704110a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability. License: unknown Vendor: Institut Pasteur Package: gensoft-tbb-2021.5 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 7218 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-tbb-2021.5_1.0_amd64.deb Size: 2355390 MD5sum: 18d453ea927b8c9e8924a6052c0dfe29 SHA1: 198939fbf1a7148e9d3a57de6fff3304363ac7c1 SHA256: bafc7b6b9fab1fa0815ec3e9f2189afe13be1859b062b09347b109a7bffaa6fa Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability. License: unknown Vendor: Institut Pasteur Package: gensoft-tcellracer-0.6.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 418515 Depends: gensoft-graphviz-2.42.3, gensoft-kallisto-0.46.2, gensoft-trinityrnaseq-2.9.1, gensoft-adm-python-2.7.17, gensoft-salmon-1.1.0, libc6, gensoft-igblast-1.15.0, libgcc-s1, gensoft-bowtie2-2.3.5.1, libstdc++6 Filename: pool/main/gensoft-tcellracer-0.6.0_1.0_amd64.deb Size: 106357194 MD5sum: 201827f30614a129d90c05b24d6cf205 SHA1: 6fdd9f82c9ffbaffda87803cc40234fc81b62337 SHA256: fb8d325067b6ecf38f0b1f8f9e91d90a48fafa7fa4717c897c666080d0b9c417 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: This tool reconstructs the sequences of rearranged and expressed T cell receptor genes from single-cell RNA-seq data. It then uses the TCR sequences to identify cells that have the same receptor sequences and so derive from the same original clonally-expanded cell. License: unknown Vendor: Institut Pasteur Package: gensoft-tcl-8.6.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 24686 Depends: libc6, zlib1g Filename: pool/main/gensoft-tcl-8.6.10_1.0_amd64.deb Size: 5939316 MD5sum: 7dd8b6391faaef01f32d4e985f7d5c4c SHA1: edea5434eb14fc13c4bcc759816278ef47c16216 SHA256: 6a66fc7277b391ac03f5f0ba469935d7335ca23195ac1bbfd1fd00f9f3836557 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. License: unknown Vendor: Institut Pasteur Package: gensoft-tclap-1.2.5 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 6747 Filename: pool/main/gensoft-tclap-1.2.5_1.0_amd64.deb Size: 3890248 MD5sum: 15e0e770d101324456b694109644b7a3 SHA1: 2ea7758c0377de690ca657f9182aaa84c246b571 SHA256: c1c899c1841b2e194759c6b6aace76b2f10178cbb2286eb29ce15bf0d3704f4f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a small, flexible library that provides a simple interface for defining and accessing command line arguments. License: unknown Vendor: Institut Pasteur Package: gensoft-tcoffee-12.00 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 26466 Depends: gensoft-tm-align-20170708, gensoft-expat-2.2.9, gensoft-probcons-1.12, gensoft-viennarna-2.4.14, gensoft-sap-1.1.3, gensoft-muscle-3.8.31, gensoft-amap-2.2, gensoft-fsa-1.15.9, gensoft-poa-v2, gensoft-adm-perl-5.30.1, libssl1.1, gensoft-mafft-7.453, gensoft-clustal-omega-1.2.4, gensoft-dialign-tx-1.0.2, gensoft-gcc-9.2.0, gensoft-pcma-2.0, gensoft-kalign-2.04, gensoft-mustang-3.2.3, zlib1g, gensoft-msaprobs-1.0.5, gensoft-proda-1.0, libc6, gensoft-msa-2.1, gensoft-hmmtop-2.1, gensoft-prank-170427, gensoft-dca-1.1, gensoft-clustalw-2.1, gensoft-probconsrna-1.12 Filename: pool/main/gensoft-tcoffee-12.00_1.0_amd64.deb Size: 13789230 MD5sum: 281f11aecab630ce8d7572b3d230763c SHA1: 2a3f5a11e42aa003ef46a1703b94eb1d13495eba SHA256: 514afde882ff3455dc0b99d3d9f1eca398df4f8a8a1bfeefe3c6bc119495c386 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: T-Coffee is a collection of tools for Computing, Evaluating and Manipulating Multiple Alignments of DNA, RNA, Protein Sequences and Structures. License: unknown Vendor: Institut Pasteur Package: gensoft-telseq-0.0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1261 Depends: gensoft-gcc-9.2.0, zlib1g, gensoft-libbam-2.5.1, libc6 Filename: pool/main/gensoft-telseq-0.0.2_1.0_amd64.deb Size: 305434 MD5sum: 3f8e2a4b620d0ac4575cbbf568cdef03 SHA1: b9e3e56ed541149a69795eff25e2e6d056608616 SHA256: 46fdb395b755cbf172fb1a5419f9e34386b6f00d8883ade2a1827aa893f6238f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: TelSeq is a software that estimates telomere length from whole genome sequencing data (BAMs). License: unknown Vendor: Institut Pasteur Package: gensoft-termcolor-2.0.0 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 31 Filename: pool/main/gensoft-termcolor-2.0.0_1.0_amd64.deb Size: 6900 MD5sum: a8db45df2a0959aab2ffbe24cc2f636c SHA1: 620ebf9bfb2aa12f35bcc4360006ba56004be650 SHA256: c6664ecad7ec167fe271c496a01c326917f98d634dca093149a8810ee2b4ac9e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Termcolor is a header-only C++ library for printing colored messages to the terminal. 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gensoft-curl-7.68.0, libc6, zlib1g, gensoft-xz-5.2.5, gensoft-r-4.2.1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-tetranscripts-2.2.3_1.0_amd64.deb Size: 674759350 MD5sum: 2099c62575d1e6f3c14825a2b52f4f86 SHA1: cd69fed6973d1fc3fd6e7b14a1815c757c207cc3 SHA256: 69442d499e4a1c7faaf98692a58942f39bd3f0604ad97e630b8667859981b500 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A package for including transposable elements in differential enrichment analysis of sequencing datasets License: unknown Vendor: Institut Pasteur Package: gensoft-texinfo-6.7 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 14241 Depends: libc6, libtinfo5, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-texinfo-6.7_1.0_amd64.deb Size: 3223722 MD5sum: 3f0795956a70b8916b9bd9b64aead4c6 SHA1: e598140da50377267822ce39841528e21502d80c SHA256: 7f3cea8858f78929ce8c6d0017d53e664b5169d8bf6c7684897633f439b95153 Section: default Priority: extra 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pool/main/gensoft-tipdate-1.2_1.0_amd64.deb Size: 132114 MD5sum: 799a769d19acab6e51bb26a8f2e28182 SHA1: 3d9958b9e78ec35ff112f29c70a38ac2e4b13574 SHA256: 7ea5ded83b06f9e37518e953d9aebb58de05138eda652cb72db60e1b5035f0c2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A program to estimate the rate of molecular evolution and time-scale of a phylogeny from dated sequences License: unknown Vendor: Institut Pasteur Package: gensoft-tk-8.6.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 8762 Depends: libc6, zlib1g, gensoft-xorg-libs-1.1, libbz2-1.0, gensoft-tcl-8.6.10 Filename: pool/main/gensoft-tk-8.6.10_1.0_amd64.deb Size: 1636122 MD5sum: a163aeb8298e14bc17a7bb4ffc9e62ce SHA1: 87193610b5b770b79b8d36c549a94e6358b4f75f SHA256: 128dbef054d0cae0a14ffaaf622b1abc74407066e355ae79f90a5e0ccd23c7f5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Tk is a graphical user interface toolkit that takes developing desktop applications to a higher level than conventional approaches. License: unknown Vendor: Institut Pasteur Package: gensoft-tm-align-20170708 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 436 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-tm-align-20170708_1.0_amd64.deb Size: 51006 MD5sum: 5b00efc11546b42a0e7ca7d4e5af89a2 SHA1: ab25aaff5fc1b3d137f6eaec928440974f53eada SHA256: feaf3203f8457e752031386c05aeb3ac509cec5cbbeb76c7b787e3856e0ac91b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: TM-align is an algorithm for sequence independent protein structure comparisons. For two protein structures of unknown equivalence License: unknown Vendor: Institut Pasteur Package: gensoft-tnt-1.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3689 Filename: pool/main/gensoft-tnt-1.5_1.0_amd64.deb Size: 1785880 MD5sum: 15a2880a0c6a41ca5960aa0ab875d1f8 SHA1: ca6e28010b417cb2a4639056a2fe6bc9908f4cdb SHA256: c0d90a419b05510648d9eb25f8c83afd4b0486168b04b01c94fc31ed922c6b8b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: TNT stands for (Tree analysis using New Technology). 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License: unknown Vendor: Institut Pasteur Package: gensoft-topaz-0.2.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5837653 Depends: gensoft-adm-python-3.9.16, zlib1g, libc6, libstdc++6, libgcc-s1 Filename: pool/main/gensoft-topaz-0.2.5_1.0_amd64.deb Size: 3088612150 MD5sum: dca60dc1e5ff0f480edcc2f708f752e3 SHA1: d4cd573db7786ec14f9b115c7dfd7255b63dafe3 SHA256: 8103c521e722984710df48f31af4159bb7bb4dd3db23d8e8fa0401ce9436878a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs. License: unknown Vendor: Institut Pasteur Package: gensoft-tophat-2.1.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 64533 Depends: gensoft-samtools-0.1.19, gensoft-boost-1.72.0, gensoft-adm-python-2.7.17, libc6, zlib1g, gensoft-bowtie2-2.1.0, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-tophat-2.1.1_1.0_amd64.deb Size: 18321430 MD5sum: 2d0a60f8ac13ba29bb77855e47ba4e7f SHA1: 1eae16dadd1ed7590400e857ef5ede82bac3caf0 SHA256: 5b05612bc55fe2e13a3674b8ef8a25107b90a67cf9217a0228bdd7b32711c3a8 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Fast splice junction mapper for RNA-Seq reads License: unknown Vendor: Institut Pasteur Package: gensoft-toppred-1.10 Version: 2.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 220 Depends: zlib1g, gensoft-expat-2.4.1, libbz2-1.0, libc6, gensoft-fontconfig-2.13.91, gensoft-libgd-gd-2.2.5, gensoft-freetype-2.10.1, gensoft-libjpeg-turbo-2.0.4, gensoft-xz-5.2.4, gensoft-gnuplot-5.2.8, gensoft-xorg-libs-1.1, gensoft-libpng-1.6.37, gensoft-libtiff-4.1.0 Filename: pool/main/gensoft-toppred-1.10_2.0_amd64.deb Size: 80376 MD5sum: c71840b97d3c7c639e094db989bf9140 SHA1: 2d46f34271b24a38d7f4b9836bba4221da2cf299 SHA256: 1be5d186db8e9aba557b70050d9aa8804be268f0a6c685c291f41c1d84ade0a5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Transmembrane topology prediction License: unknown Vendor: Institut Pasteur Package: gensoft-toulligqc-2.7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1090469 Depends: libc6, libgcc-s1, gensoft-adm-python-3.11.5, zlib1g, libstdc++6 Filename: pool/main/gensoft-toulligqc-2.7_1.0_amd64.deb Size: 317912778 MD5sum: bb7c53ada933a9c21bb8523f44d93c14 SHA1: 0428703c5b3d07f2ca787e6221970df3b2ebb26b SHA256: fb34b43d3abdb23c3ae4278a5ac6af4a0f8ff5919f6cd99217ef33d80250d33c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: ToulligQC is dedicated to the QC analyses of Oxford Nanopore runs License: unknown Vendor: Institut Pasteur Package: gensoft-tpot-0.11.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 229084 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-tpot-0.11.1_1.0_amd64.deb Size: 74848804 MD5sum: 54633cd757e075df8e40e5a93b045c0f SHA1: 4031779551cf0b70a5ada7fcac53df04669386aa SHA256: 4b5b1f05932dac03e370c4f0281ec7c67795453a2fd9760ed5cd3362497ecf62 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a Python tool that automatically creates and optimizes machine learning pipelines using genetic programming. License: unknown Vendor: Institut Pasteur Package: gensoft-tracer-v1.7.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6350 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-tracer-v1.7.1_1.0_amd64.deb Size: 5944354 MD5sum: 053ced5a59153e5915d158215523819c SHA1: fc3e319570249f7b64e285dd7465fab5a7b41023 SHA256: f72b0d28d14c927d8197202dd133dfc0d7db24c8a1dd33c80f98c7ffd512c813 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Tracer a program for analysing the trace files generated by Bayesian MCMC runs. It can be used to analyse runs of BEAST, MrBayes, LAMARC and possibly other MCMC programs. License: unknown Vendor: Institut Pasteur Package: gensoft-traitar-1.1.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 262883 Depends: gensoft-hmmer-3.3, gensoft-adm-python-2.7.17, gensoft-prodigal-2.6.3.pp1 Filename: pool/main/gensoft-traitar-1.1.1_2.0_amd64.deb Size: 87431404 MD5sum: 2bec7e2d4224a09a8af4cd43ad46bfe9 SHA1: 684a37f1348f748d3007debc17c598319349b82d SHA256: 39ecbe8bfd21f4255f433051880bbc38b285ab34f772c6962bb87f2c4c6edf3e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Traitar is a software for characterizing microbial samples from nucleotide or protein sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-transabyss-2.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 19259 Depends: libstdc++6, libc6, gensoft-abyss-2.2.4, gensoft-blat-36, libgcc-s1, gensoft-adm-python-2.7.17 Filename: pool/main/gensoft-transabyss-2.0.1_1.0_amd64.deb Size: 6308940 MD5sum: 18e08a68549b8ebfcaa50b8e5c8c4e9e SHA1: 8a7242ca5f31662260bcd57a3649be734ba6c2fd SHA256: 85a0f281b94b3943266ec4ad4b90290660210e76d6d30a2b23ac15fb740a3387 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: de novo assembly of RNAseq data using ABySS License: unknown Vendor: Institut Pasteur Package: gensoft-transdecoder-5.5.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 112111 Depends: libc6, zlib1g, gensoft-expat-2.4.1, gensoft-freetype-2.10.1, libbz2-1.0, gensoft-fontconfig-2.13.91, gensoft-gcc-9.2.0, gensoft-adm-perl-5.30.1, gensoft-hmmer-3.2.1, gensoft-libpng-1.6.37, gensoft-r-4.2.1 Filename: pool/main/gensoft-transdecoder-5.5.0_1.0_amd64.deb Size: 54287822 MD5sum: 6a0dd9e3cdc43cd3470a6d6274a541c4 SHA1: 5644f3a09b1ba1aa0b04562d44f3bfb8d3a8f1d7 SHA256: 78b8cee6457aaac714328071b0b00061e6352cafd3effd376c5d63693a1087af Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. 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License: unknown Vendor: Institut Pasteur Package: gensoft-transit-3.3.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 553089 Depends: libc6, gensoft-pcre2-10.34, libreadline8, gensoft-xz-5.2.5, libstdc++6, gensoft-adm-python-3.7.6, zlib1g, gensoft-pcre-8.43, libpcre2-8-0, gensoft-gcc-9.2.0, gensoft-zlib-1.2.11, libtinfo6, libgcc-s1, gensoft-atlas-3.10.2, gensoft-r-3.6.2, gensoft-bwa-0.7.17 Filename: pool/main/gensoft-transit-3.3.4_1.0_amd64.deb Size: 175869684 MD5sum: 7c8f22da95a3d3f628c091b6f1dcbcc4 SHA1: 5819efc6a25be122b1a1785568a0fba2fd7fbf1a SHA256: 1604947cf6630c92fb1ee673b6ae43acc29f8afcf09cb132353b43e0e3d01b3e Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: TRANSIT is a tool for the analysis of Tn-Seq data. License: unknown Vendor: Institut Pasteur Package: gensoft-trax-1.0.0-beta Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 1313441 Depends: gensoft-gcc-9.2.0, gensoft-infernal-1.1.4, zlib1g, gensoft-libiconv-1.16, gensoft-ucsc-tools-v390, gensoft-bowtie2-2.3.5.1, gensoft-adm-python-2.7.17, gensoft-samtools-1.10, libbz2-1.0, libssl1.1, gensoft-r-4.1.0, gensoft-curl-7.68.0, gensoft-sra-sdk-2.10.2, gensoft-bedtools-2.29.2, gensoft-libxml2-2.9.10, gensoft-seqprep-1.3.2, gensoft-libpng-1.6.37, gensoft-xz-5.2.5, libc6, gensoft-cutadapt-1.18 Filename: pool/main/gensoft-trax-1.0.0-beta_1.0_amd64.deb Size: 754506546 MD5sum: f7a2ba345584b18cc7ba3e5a93dab839 SHA1: 1cdfea9c5194f794304a1a0435a15d97a7e874ba SHA256: 1a90cb8c7f32979f15bbb9b6fb4b9f67941a3fc07feca845e8ca983aa03feb97 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: tRNA Analysis of eXpression (tRAX) is a software package built for in-depth analyses of tRNA-derived small RNAs (tDRs), mature tRNAs, and inference of RNA modifications from high-throughput small RNA sequencing data License: unknown Vendor: Institut Pasteur Package: gensoft-tre-0.8.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 378 Depends: libc6 Filename: pool/main/gensoft-tre-0.8.0_1.0_amd64.deb Size: 141208 MD5sum: 79b242a37331521db421eca3d49cb8f4 SHA1: ec7eaa07002e50ec279e59c1b73dd7a3143151e3 SHA256: 3650c3624ec58bc27b79823b423114aec03e657362e3ad40a135570bc8e36c0a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a lightweight, robust, and efficient POSIX compliant regexp matching library with some exciting features such as approximate (fuzzy) matching. License: unknown Vendor: Institut Pasteur Package: gensoft-tree-puzzle-5.2 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 2541 Depends: libc6, gensoft-openmpi-4.0.5, zlib1g Filename: pool/main/gensoft-tree-puzzle-5.2_1.0_amd64.deb Size: 1268240 MD5sum: 123626b99107587c7200470cf443faff SHA1: 0af37cbcdf1590100848772c2c10f0c0b77d9e19 SHA256: 90b159e83c86031e3f32f76a19d7ad9705f04793f34386c2907d4ceab6f4685c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Transmembrane topology prediction License: unknown Vendor: Institut Pasteur Package: gensoft-treecluster-1.0.3 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 11689 Depends: gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-treecluster-1.0.3_1.0_amd64.deb Size: 3682890 MD5sum: a4a6f245d48020cfb205eb49aeb31c13 SHA1: 4f8dd53111b49c4785e1af63f41adf259e004202 SHA256: 16a0130f0ca57a2ea2b93caf4ec35526d7c6e102acc35a3b2b4f244787dca689 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: TreeCluster is a tool that, given a tree T (Newick format) and a distance threshold t, finds the minimum number of clusters of the leaves of T such that some user-specified constraint is met in each cluster. License: unknown Vendor: Institut Pasteur Package: gensoft-treemix-1.13 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 57886 Depends: zlib1g, gensoft-gcc-9.2.0, libc6, gensoft-gsl-2.6 Filename: pool/main/gensoft-treemix-1.13_1.0_amd64.deb Size: 14422024 MD5sum: 486ff55b6d77f61c7ea61dedef4021bd SHA1: f3fe75c650834f0b563f763e1013dcf760d09e87 SHA256: 6cd96dfc799591a51d38f000c673bc9d6fb045898f52ba707511296ea4b16e19 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a method for inferring the patterns of population splits and mixtures in the history of a set of populations License: unknown Vendor: Institut Pasteur Package: gensoft-treetime-0.7.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 239872 Depends: gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-treetime-0.7.4_1.0_amd64.deb Size: 81811140 MD5sum: 1336677e441d7974c700a7e7c3f99ac1 SHA1: baf373aa864c503a28988d23f0f01eb1a847c4a7 SHA256: 225735789bb42c21dd4ba2b070e4fdc579d136d55a5646e101b7d13d021ffc0e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: TreeTime provides routines for ancestral sequence reconstruction and the inference of molecular-clock phylogenies, i.e., a tree where all branches are scaled such that the locations of terminal nodes correspond to their sampling times and internal nodes are placed at the most likely time of divergence. License: unknown Vendor: Institut Pasteur Package: gensoft-treetime-0.8.6 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 296990 Depends: zlib1g, libstdc++6, gensoft-adm-python-3.8.1, libc6, libgcc-s1 Filename: pool/main/gensoft-treetime-0.8.6_1.0_amd64.deb Size: 92473902 MD5sum: bed76433c981bbcae2f4f39261df331c SHA1: 433b3240ff3fc5fa940480ab86848303a401e72c SHA256: 976fc7949d733d0eda59efe566a5d316321af316386deeca5f5690b623d65df5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: TreeTime provides routines for ancestral sequence reconstruction and the inference of molecular-clock phylogenies, i.e., a tree where all branches are scaled such that the locations of terminal nodes correspond to their sampling times and internal nodes are placed at the most likely time of divergence. License: unknown Vendor: Institut Pasteur Package: gensoft-trf-4.09 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 114 Depends: libc6 Filename: pool/main/gensoft-trf-4.09_1.0_amd64.deb Size: 48542 MD5sum: e4ebfaddcb20b7b47f4d793ca1a1f593 SHA1: 41325d46e82c00dd72b82ada7bf0f72513e47149 SHA256: d70801fadff066ad2c8954ae3ef2e73991e0715a13d20b4193eb80e1c85ea71f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. License: unknown Vendor: Institut Pasteur Package: gensoft-trimal-1.4.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 682 Depends: libc6 Filename: pool/main/gensoft-trimal-1.4.1_1.0_amd64.deb Size: 271480 MD5sum: d8742949678282093c5f65545aaa4b25 SHA1: 5e818acd2018d6c5ed86de3658ab24a60f504062 SHA256: 25565f533194888f8e72b86e68cbc5e0a7ecf85098a2be4e44579a9f04f50e94 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A tool for automated alignment trimming in large-scale phylogenetic analyses License: unknown Vendor: Institut Pasteur Package: gensoft-trimgalore-0.6.6 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 677 Depends: gensoft-adm-perl-5.30.1, gensoft-fastqc-0.11.9, gensoft-cutadapt-2.10 Filename: pool/main/gensoft-trimgalore-0.6.6_2.0_amd64.deb Size: 349196 MD5sum: 2dbf418e8c612321e0be5707660e4a28 SHA1: 873624c2c7f04f7177e45dce98da0ad24cbe198f SHA256: 0ca4aff2421be407a4bd6da07fb1406adae8a3541c669683a641fad37579f0a6 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data. 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License: unknown Vendor: Institut Pasteur Package: gensoft-trimmomatic-0.39 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 459 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-trimmomatic-0.39_1.0_amd64.deb Size: 419280 MD5sum: c05e5d960e851583218e088b1f2e9aa5 SHA1: b4ef13ca57d86f3ce730933ac66790c3cbab9198 SHA256: 91a4ba23dbe023bdfe4ff8a3f691a7405059b2b496c3a05eea6a2388ac67105b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A flexible read trimming tool for Illumina NGS data License: unknown Vendor: Institut Pasteur Package: gensoft-trinityrnaseq-2.9.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 90934 Depends: gensoft-salmon-1.1.0, zlib1g, gensoft-adm-python-2.7.17, libc6, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0, gensoft-jellyfish-2.3.0, gensoft-graalvm-ce-java8-20.0.0, gensoft-samtools-1.10, gensoft-bowtie2-2.3.5.1 Filename: pool/main/gensoft-trinityrnaseq-2.9.1_1.0_amd64.deb Size: 26777420 MD5sum: bee395ac7b1c074ed550300578196cd0 SHA1: dc9c5f0b10da0842f9add049cb081be532456ef6 SHA256: 040f2a85db2915d8b6a5fde95ed88d608d370aaad317b031293a5b657dbcdc6f Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a novel method for the efficient and robust de novo reconstruction of transcriptomes from Illumina RNA-seq data. License: unknown Vendor: Institut Pasteur Package: gensoft-trnascan-1.3.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1893 Depends: libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-trnascan-1.3.1_1.0_amd64.deb Size: 562104 MD5sum: 67476d34cd2bbb4a6dd873de75b704e8 SHA1: 6c37f17c24fc586eff3a924e715e57bfb83c0d4d SHA256: 411785246dccd27a999d0ac96b67534050a0ea24cb91b3ce17b8f67bdd4bd116 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: tRNA detection in large-scale genome sequence License: unknown Vendor: Institut Pasteur Package: gensoft-trnascan-se-2.0.12 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 18795 Depends: gensoft-adm-perl-5.30.1, libc6, gensoft-infernal-1.1.3 Filename: pool/main/gensoft-trnascan-se-2.0.12_1.0_amd64.deb Size: 4383408 MD5sum: 5263caa96fc77d6993903004a1425208 SHA1: 0e04887fe336fc83e44d5e8c37f0b712f1c25b23 SHA256: bf6c7aed1a5190ea8fe25b6fdec317d78bda434abd62e856d2d89a6819c10d1c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: An improved tool for transfer RNA detection License: unknown Vendor: Institut Pasteur Package: gensoft-trnascan-se-2.0.7 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 18616 Depends: gensoft-infernal-1.1.3, libc6, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-trnascan-se-2.0.7_2.0_amd64.deb Size: 4350012 MD5sum: 3dba0f452fb2b60e08e3ce02879e80e8 SHA1: 2dced713cdc74e2b1e5afd5205bd157f3c849a61 SHA256: 93aceddac1f98672b5326b29bf98895341e9d321ebc2b0ed3358c286cef42021 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: An improved tool for transfer RNA detection License: unknown Vendor: Institut Pasteur Package: gensoft-trnascan-se-2.0.9 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 18624 Depends: libc6, gensoft-adm-perl-5.30.1, gensoft-infernal-1.1.3 Filename: pool/main/gensoft-trnascan-se-2.0.9_2.0_amd64.deb Size: 4350670 MD5sum: 262fe53fc5852fcf97b4792d3bcd1149 SHA1: c5303dee444e9ec53e2743de65ce0a9097f606f8 SHA256: 738cd64776ebe23e46828c59f2d8ad03c1ca374276dadcf808558ed11bbec682 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: An improved tool for transfer RNA detection License: unknown Vendor: Institut Pasteur Package: gensoft-trycycler-0.5.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 189131 Depends: libstdc++6, gensoft-minimap2-2.17, gensoft-miniasm-0.3, gensoft-r-4.1.0, gensoft-muscle-3.8.1551, libc6, gensoft-adm-python-3.8.1, libgcc-s1, gensoft-mash-2.2 Filename: pool/main/gensoft-trycycler-0.5.0_1.0_amd64.deb Size: 60535220 MD5sum: 31f98778512eb40d9c669f7bf53a436d SHA1: ba15daca3eca8359b9d03c8ac92e4212d4f3f8ba SHA256: 41a75920906fbf74b0b8dfc8654bfe841499637d1853050e93912b5584483e8d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A tool for generating consensus long-read assemblies for bacterial genomes License: unknown Vendor: Institut Pasteur Package: gensoft-trycycler-0.5.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 305039 Depends: gensoft-adm-python-3.8.1, gensoft-minimap2-2.28, gensoft-muscle-3.8.1551, gensoft-r-4.4.0, libstdc++6, gensoft-miniasm-0.3, libc6, gensoft-lapack-3.9.0, gensoft-mash-2.3, libgcc-s1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-trycycler-0.5.5_1.0_amd64.deb Size: 103660092 MD5sum: 39970a19019497f81bc5dd4a85bce4db SHA1: ff54eb9d4fa67fcc4d8b86ed78f2b7c994b971cd SHA256: 3faa3b75f30d0e87243563d628ea30a6e15c8c87ea24db53063c622fe70abc02 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A tool for generating consensus long-read assemblies for bacterial genomes License: unknown Vendor: Institut Pasteur Package: gensoft-ttmath-0.9.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 479 Filename: pool/main/gensoft-ttmath-0.9.3_1.0_amd64.deb Size: 106124 MD5sum: f7550f6b65264541bf7839ccd7cb41b6 SHA1: ecb503cf0397a1b42f232ceab4ad0acfb2110f27 SHA256: f253a2a4d0288ce6e2fb450ae27337b0b6b296db6775972a53920d195db70567 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: TTMath is a small library which allows one to perform arithmetic operations with big unsigned integer, big signed integer and big floating point numbers. It provides standard mathematical operations like adding, subtracting, multiplying, dividing. With the library also goes a mathematical parser to help you solving mathematical expressions. 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License: unknown Vendor: Institut Pasteur Package: gensoft-udunits-2.2.26 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 855 Depends: gensoft-expat-2.2.9, libc6 Filename: pool/main/gensoft-udunits-2.2.26_1.0_amd64.deb Size: 222194 MD5sum: 5a87e9010d98999280e6e3ad7bd12899 SHA1: bf9a518abd88c2812af48a49840eba601a93c5b5 SHA256: 7736bb29686c7e71e1666accb25c3ba17e0030379b034441c4826f9e340f6e7a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: UDUNITS package supports units of physical quantities. Its C library provides for arithmetic manipulation of units and for conversion of numeric values between compatible units. License: unknown Vendor: Institut Pasteur Package: gensoft-ultraplex-1.2.5 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 22641 Depends: gensoft-adm-python-3.8.1, libc6 Filename: pool/main/gensoft-ultraplex-1.2.5_1.0_amd64.deb Size: 7003116 MD5sum: 48ac19bb8606dededcdaf38f0dcf35e0 SHA1: 9bb6c94396d7d14451171ae02de8c20879b913bb SHA256: 08c05b7b99f2dc79528153a0200a36f3b50b90540181d5325ef1d560a007e721 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an all-in-one software package for processing and demultiplexing fastq files License: unknown Vendor: Institut Pasteur Package: gensoft-umi-tools-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 272608 Depends: libbz2-1.0, zlib1g, gensoft-adm-python-3.8.1, libssl1.1, libc6 Filename: pool/main/gensoft-umi-tools-1.0.1_1.0_amd64.deb Size: 85127154 MD5sum: a272d033c59814ed2d4d8fe9278568f7 SHA1: 371a8b729535cd3d43a92af8f301413b8b5e59cd SHA256: 4e413f771bc17d56552d03053326b447b7340ff8e01e88447ac0edf6d8875beb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Tools for handling Unique Molecular Identifiers in NGS data sets License: unknown Vendor: Institut Pasteur Package: gensoft-umi-tools-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 272748 Depends: libbz2-1.0, libssl1.1, gensoft-adm-python-3.8.1, zlib1g, libc6 Filename: pool/main/gensoft-umi-tools-1.1.0_1.0_amd64.deb Size: 85173110 MD5sum: f312b8f1773a273383caefbf19f2f012 SHA1: 057b7eaaadee06a7522eefb75e12a144dc2ba90d SHA256: 896e3b6b3384f53e12cfbff967a310ef6ada53112b982be0b58804d83c329f61 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Tools for handling Unique Molecular Identifiers in NGS data sets License: unknown Vendor: Institut Pasteur Package: gensoft-unicycler-0.4.8 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 12901 Depends: gensoft-racon-1.4.3, gensoft-gcc-9.2.0, libc6, gensoft-samtools-1.10, gensoft-blast+-2.10.0, gensoft-pilon-1.23, gensoft-adm-python-3.8.1, gensoft-bowtie2-2.3.5.1, gensoft-spades-3.14.0, zlib1g Filename: pool/main/gensoft-unicycler-0.4.8_1.0_amd64.deb Size: 4089936 MD5sum: 909f670bbae86b100ea6017088aced02 SHA1: 8d8e5b6f3d731ec5bc194258aa8561b1669e1957 SHA256: 1d00148bfeba473678b3bd44a6a93339653989c407f757067b097ed0465ad6cb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Unicycler is an assembly pipeline for bacterial genomes. 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It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly. License: unknown Vendor: Institut Pasteur Package: gensoft-unitig-counter-1.1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 10035 Depends: gensoft-boost-1.72.0, gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-unitig-counter-1.1.0_1.0_amd64.deb Size: 3671556 MD5sum: 81e32b0cb932068a4ea5d89cf3d9a37b SHA1: 4a28c6a47c026bc8c4baada4eb076d8e16e06788 SHA256: ed45a52ae439463612731f565841513748be3638055cb14a7faadb4f49873bc7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Uses a compressed de Bruijn graph to count unitigs in bacterial populations. This is a slightly modified version of the unitig and graph steps in DBGWAS software, repurposed for input into pyseer License: unknown Vendor: Institut Pasteur Package: gensoft-unrar-6.0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 300 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-unrar-6.0.2_1.0_amd64.deb Size: 145970 MD5sum: 41ed3f71a01f9b6e871a857afce4ccc8 SHA1: 8c8291a288d3c2650611f274303d1737ee69fc60 SHA256: 30b738990b7bf1a6af87387a8e41ce9d90f965de5ac6d6935cb283035c0c30fc Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The UnRar package contains a RAR extraction utility used for extracting files from RAR archives License: unknown Vendor: Institut Pasteur Package: gensoft-upimapi-1.13.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 162324 Depends: gensoft-adm-python-3.8.1, gensoft-diamond-2.1.13, libgcc-s1, zlib1g, libstdc++6, libc6 Filename: pool/main/gensoft-upimapi-1.13.3_1.0_amd64.deb Size: 48996054 MD5sum: f7bbbd79a70136df1d0cec565fc686eb SHA1: 2bb56dc086decbd73e0b60f496b2e90c0e385ae7 SHA256: d00c757f6c3be2045f4738be3e1764082bc6a60357f179b500f51fd1ba5aa735 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a command line interface for using UniProt API, which allows to access UniProt ID mapping programmatically License: unknown Vendor: Institut Pasteur Package: gensoft-valgrind-3.18.1 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 270703 Depends: libc6, gensoft-openmpi-4.0.5, zlib1g Filename: pool/main/gensoft-valgrind-3.18.1_1.0_amd64.deb Size: 75145300 MD5sum: 54ff1ac4c0a74ef1c78940af28f76418 SHA1: 02b3aedbffabdd983bd86b51d288dfdd0bc816af SHA256: f7e2337161d14fb92428b18bcb212c6ccf400ab96fdfe28cfadd7ef8e7326353 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: an instrumentation framework for building dynamic analysis tools License: unknown Vendor: Institut Pasteur Package: gensoft-varscan-2.4.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 114 Depends: gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-varscan-2.4.2_1.0_amd64.deb Size: 116530 MD5sum: f0ac08b8477db5df36d9bbb75eb6b000 SHA1: c642f895b7cf85314a102d9a142f2024dd47bdec SHA256: d9a9ac7e1feac609bd9d03bcc5b3c7fd034079dce5372a2097e60cebfd66d510 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: tool for identifying SNPs and indels in massively parallel sequencing of individual and pooled samples License: unknown Vendor: Institut Pasteur Package: gensoft-varscan-2.4.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 125 Depends: gensoft-graalvm-ce-java19-22.3.1 Filename: pool/main/gensoft-varscan-2.4.6_1.0_amd64.deb Size: 128208 MD5sum: 715e7ad7bb55c2701ba22ad90f21adbc SHA1: 8422b1fa0378884cae1634c9b1bda0b8a7a953da SHA256: 0b94276a637be4048350aefb7cf06679b81f53e2462e1f2d035e68390e5000a2 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: tool for identifying SNPs and indels in massively parallel sequencing of individual and pooled samples License: unknown Vendor: Institut Pasteur Package: gensoft-varvamp-1.2.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 245243 Depends: libc6, zlib1g, libstdc++6, gensoft-adm-python-3.9.16, libgcc-s1 Filename: pool/main/gensoft-varvamp-1.2.2_1.0_amd64.deb Size: 75819506 MD5sum: e7e28c81b5d663a498ba3e0b14de0dba SHA1: f0899df504f5fbd2416a056870cc49ee93601dbf SHA256: 1c35f1e2cafd3f02479be0d961510689431b60af1a0203b90c6345e0d8e849c8 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Variable VirusAMPlicons (varVAMP) design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses. License: unknown Vendor: Institut Pasteur Package: gensoft-vawk-0.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 13 Depends: gensoft-adm-python-2.7.17, mawk Filename: pool/main/gensoft-vawk-0.0.1_1.0_amd64.deb Size: 6130 MD5sum: 890c7cb9ec976540de1ba041234b34d3 SHA1: a152445e58220d2ae9e5e46db1d3c70a6ad5d49d SHA256: 021162a850d130de6c4dc6e19201965f29c91b3140045a4a3f3d1ce5810b0737 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: An awk-like VCF parser License: unknown Vendor: Institut Pasteur Package: gensoft-vcf2mst-a5d5c9d Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 24 Depends: gensoft-grapetree-2.1, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-vcf2mst-a5d5c9d_1.0_amd64.deb Size: 8438 MD5sum: 4e1a08920008e348a73c066eb74495aa SHA1: f76debe242fd33db5570526187edecddf492a174 SHA256: 3dcd881c012e6d07117cdb8ff9b2156359b9f94e47d0733d3e073ee60df0b432 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Hamming Distance based Minimum Spanning Tree from Samples vcf using graptree License: unknown Vendor: Institut Pasteur Package: gensoft-vcflib-1.0.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 240282 Depends: gensoft-htslib-1.10, gensoft-xz-5.2.4, gensoft-adm-python-3.8.1, zlib1g, libc6, libbz2-1.0, gensoft-gcc-9.2.0, gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-vcflib-1.0.1_1.0_amd64.deb Size: 85829580 MD5sum: 182d1fa3068a4ee1d8cd747184f53d70 SHA1: f940188e94496c663b77a9fe5dcc78acb358ef85 SHA256: a9d5eb67de7efdc06702e2be16c2832d8b71d7206bf9bb07c43c6412c22c9883 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a C++ library for parsing and manipulating VCF files. License: unknown Vendor: Institut Pasteur Package: gensoft-vcftools-0.1.16 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 27061 Depends: zlib1g, gensoft-adm-perl-5.30.1, gensoft-gcc-9.2.0, libc6, gensoft-tabix-0.2.6, gensoft-zlib-1.2.11 Filename: pool/main/gensoft-vcftools-0.1.16_1.0_amd64.deb Size: 6762182 MD5sum: 6dac46b0398102d11c416c68bdf0ef00 SHA1: 1223d8afe0ed991e01c1ccb21eb868c9235b2cbe SHA256: 607ce0e13b9a74c3644d7a3c59432f3f5845eaaf497a2e0548b3da9d02d193e3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A program package designed for working with VCF files License: unknown Vendor: Institut Pasteur Package: gensoft-vcontact2-0.9.19 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 502602 Depends: gensoft-mcl-14-137, gensoft-diamond-2.0.6, gensoft-blast+-2.10.1, gensoft-adm-python-3.8.1, gensoft-clusterone-1.2 Filename: pool/main/gensoft-vcontact2-0.9.19_1.0_amd64.deb Size: 263389176 MD5sum: 05ab62ae059adc192117a1e7816ac178 SHA1: 0ce6554d6c55fd14bbebd2747558f241877658ef SHA256: 32c6143a00d25334b8212455294801e893ae46e52231606e674f9c9022acece1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool to perform guilt-by-contig-association classification of viral genomic sequence data. It is designed to cluster and provide taxonomic context of viral metagenomic sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-velvet-1.2.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2445 Depends: libc6, zlib1g, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-velvet-1.2.10_1.0_amd64.deb Size: 1405520 MD5sum: 65a469d23b3a28b43e5cc0674bee5754 SHA1: 5f19af2e96a91a1ec60039b19631b44104da323c SHA256: 9b7bf30696639770320b73483a10ac5b12e3e02f2c02a3e14f3c7d5c129ab10e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Sequence assembler for very short reads License: unknown Vendor: Institut Pasteur Package: gensoft-velvetoptimiser-2.2.6 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 23294 Depends: gensoft-libxml2-2.9.10, gensoft-expat-2.4.1, gensoft-adm-perl-5.30.1, libc6, zlib1g, gensoft-libiconv-1.16, gensoft-xz-5.2.5, libssl1.1, gensoft-velvet-1.2.10 Filename: pool/main/gensoft-velvetoptimiser-2.2.6_1.0_amd64.deb Size: 5830224 MD5sum: 584b6801d60c574bc451fdcbb5c39f05 SHA1: a5df6f4d880ff6e3f36f17cc04f00b159258576f SHA256: 5e1424cf09d536ca27c6c8e9a3b606f9dbfcd9e848797807651c3f693d674336 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Automatically optimise three of Velvet assembly parameters License: unknown Vendor: Institut Pasteur Package: gensoft-vg-1.37.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 39240 Filename: pool/main/gensoft-vg-1.37.0_2.0_amd64.deb Size: 15004052 MD5sum: eaf1508ef7044ab0677ebbbb51060e89 SHA1: 9073a7ac309a12ccb8274150d65b71700e8d3755 SHA256: dc03f81101878ffe829191223b01726b0d1995d928620a0193adaa6ee2e4407b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: tools for working with genome variation graphs License: unknown Vendor: Institut Pasteur Package: gensoft-vg-1.46.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 44122 Filename: pool/main/gensoft-vg-1.46.0_2.0_amd64.deb Size: 16673090 MD5sum: 9c4887f16845262dce0581ba2308f2d7 SHA1: 981e8f13bd95a5fa301d2832f3eccba346964bea SHA256: d514583702894a315b462d494f5c75dff13ff89ec49bfbfe4aa22e5dc173e5ea Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: tools for working with genome variation graphs License: unknown Vendor: Institut Pasteur Package: gensoft-vibrant-1.2.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 11124487 Depends: gensoft-hmmer-3.3, gensoft-prodigal-2.6.3.pp1, libstdc++6, libc6, libgomp1, libgcc-s1, gensoft-adm-python-3.8.1 Filename: pool/main/gensoft-vibrant-1.2.1_2.0_amd64.deb Size: 3613163840 MD5sum: 8c90e3a305ac563b225fb999b3c6ff18 SHA1: 6b409bdfff37a0e1d543dbca30d793f5db5944e3 SHA256: c9fd1f6e2b5e35f8e08522e11e7f54af6f221a4ae5d3bffeabe919a08d13da74 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a tool for automated recovery and annotation of bacterial and archaeal viruses, determination of genome completeness, and characterization of viral community function from metagenomic assemblies. VIBRANT uses neural networks of protein annotation signatures and genomic features to maximize identification of highly diverse partial or complete viral genomes as well as excise integrated proviruses. License: unknown Vendor: Institut Pasteur Package: gensoft-viennarna-2.4.14 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 244869 Depends: gensoft-adm-perl-5.30.1, libc6, gensoft-gsl-2.6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-viennarna-2.4.14_1.0_amd64.deb Size: 62689602 MD5sum: e9f5eb643ea4438fca0cbe78a8042d0e SHA1: b65a99972b17b1ced8d9f745df780efafbfcf957 SHA256: 8e6c797e49429a277d62ea909f7b4ee2a1456a7f77918055d7faab866ed4c3c2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: RNA Secondary Structure Prediction and Comparison License: unknown Vendor: Institut Pasteur Package: gensoft-viennarna-2.6.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 366956 Depends: gensoft-gmp-6.2.0, gensoft-gsl-2.6, gensoft-mpfr-4.0.2, gensoft-lapack-3.10.0, gensoft-adm-perl-5.30.1, libc6, libgcc-s1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-viennarna-2.6.4_1.0_amd64.deb Size: 95018170 MD5sum: abd3255217007f960f9e1569fa7dab22 SHA1: 609ece8e337568db5cd7b18800c1fd87e4773455 SHA256: 65bc32a9c38be4a94cd4b84e6ee5ef83753a5585fc8936ca02ead8b5bdaddea4 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: RNA Secondary Structure Prediction and Comparison License: unknown Vendor: Institut Pasteur Package: gensoft-viennarna-2.7.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 389384 Depends: gensoft-adm-perl-5.30.1, gensoft-mpfr-4.0.2, gensoft-adm-python-3.8.1, gensoft-gsl-2.6, gensoft-gmp-6.2.0, gensoft-lapack-3.10.0, libgcc-s1, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-viennarna-2.7.0_1.0_amd64.deb Size: 102910858 MD5sum: adb84d6b4da2f3467161bf9afb3c8636 SHA1: 8bce5474b0302f89be23b42b59a2216df1b352c5 SHA256: e0b64b27ba92125c6f181a6652a8fca26ee2b563ea40a16a09a9461365d31e32 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: RNA Secondary Structure Prediction and Comparison License: unknown Vendor: Institut Pasteur Package: gensoft-viga-0.12.0 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 220558 Depends: gensoft-aragorn-1.2.41, gensoft-prodigal-gv-2.9.0, gensoft-diamond-2.1.8, gensoft-hhsuite-3.3.0, gensoft-adm-python-3.8.1, libstdc++6, libc6, libgcc-s1, gensoft-hmmer-3.4, gensoft-blast+-2.15.0, gensoft-prodigal-2.6.3.pp1, gensoft-lastz-1.04.22, gensoft-infernal-1.1.5, gensoft-pilercr-1.06 Filename: pool/main/gensoft-viga-0.12.0_1.0_amd64.deb Size: 68291170 MD5sum: ec1107975bda65324fb4d286ea6208e8 SHA1: a7fa35d1f5eacd5e23d115a00976c51a3b7af03a SHA256: 4b0e805f7d9949dd7acc92ef08d9388ceed7e538893ec231b6b9186436a3a916 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: VIGA is a tool that annotates viral genomes automatically (using a de novo algorithm) and predict the function of their proteins using BLAST and HMMER License: unknown Vendor: Institut Pasteur Package: gensoft-viptreegen-1.1.3 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 59086 Depends: gensoft-blast+-2.13.0, gensoft-libiconv-1.16, gensoft-gmp-6.2.0, gensoft-libxml2-2.9.10, gensoft-gcc-9.2.0, gensoft-r-4.2.1, gensoft-parallel-20200222, zlib1g, gensoft-ruby-2.7.0, libc6, gensoft-xz-5.2.5 Filename: pool/main/gensoft-viptreegen-1.1.3_1.0_amd64.deb Size: 23524090 MD5sum: 2151151cd323583b6f65243bc1edfcff SHA1: 276d57b9d1229cb3fb4b933f3a70c8fc97ad493d SHA256: cdcb366e4ec6b6098d8164e766a9fda64b85e2e1220c560ceec862876fec61a3 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: a command line tool for viral proteomic tree generation License: unknown Vendor: Institut Pasteur Package: gensoft-viralcomplete-db9ffa7 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 199061 Depends: zlib1g, libc6, gensoft-adm-python-3.8.1, libgcc-s1, gensoft-blast+-2.13.0, gensoft-prodigal-2.6.3.pp1 Filename: pool/main/gensoft-viralcomplete-db9ffa7_1.0_amd64.deb Size: 66497158 MD5sum: 6ebcd520c98f6f065289e9c3a9d9e121 SHA1: c36139d06ab9a30bad02a9c29bb8c728cb3fe88c SHA256: e9bb416a9221ee771a49dd5d22b70ff271ca9495dc7a6e815ead1779cf8ec49d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: viralComplete is intended for completeness verification of novel viral contigs License: unknown Vendor: Institut Pasteur Package: gensoft-viralverify-1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 764537 Depends: gensoft-hmmer-3.3.2, libgcc-s1, gensoft-prodigal-2.6.3.pp1, libc6, zlib1g, gensoft-adm-python-3.8.1, gensoft-blast+-2.13.0 Filename: pool/main/gensoft-viralverify-1.1_1.0_amd64.deb Size: 160426816 MD5sum: 635ca0095ecc2ce409c70e82bb286129 SHA1: 7be5bc3539d4f0dbead22962e630e4a2212fd64a SHA256: e9998d32c620e6c87ff4a2e68d97953ef5f77e8e94b568e08320a251fcbac179 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: viralVerify classifies contigs (output of metaviralSPAdes or other assemblers) as viral, non-viral or uncertain, based on gene content. Also for non-viral contigs it can optionally provide plasmid/non-plasmid classification. License: unknown Vendor: Institut Pasteur Package: gensoft-viridic-1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 470324 Depends: gensoft-apptainer-1.1.9 Filename: pool/main/gensoft-viridic-1.1_1.0_amd64.deb Size: 477223850 MD5sum: 7e464ad6c691763ac066ff5e65877b0d SHA1: 89a95f644bd14e4e76591ec8ef42d82c5021ef58 SHA256: b2d55922ded1dc370e1fd5ba149109fc1aeed9341816ab00e21572962f72d466 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes. License: unknown Vendor: Institut Pasteur Package: gensoft-viromeqc-1.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 173163 Depends: gensoft-diamond-0.9.30, gensoft-bowtie2-2.3.5.1, gensoft-adm-python-3.8.1, libc6, gensoft-samtools-1.10 Filename: pool/main/gensoft-viromeqc-1.0_1.0_amd64.deb Size: 51481918 MD5sum: 2085ca21014ef555ef17ad630acb3674 SHA1: b745738380cb10061c974e3943c74be160af5fa4 SHA256: 9650413cf8980ca59c6b1c36bd8e6e131f21e44d56e4b7145ec9b9ce25b1786a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes License: unknown Vendor: Institut Pasteur Package: gensoft-virsorter-1.0.6 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 12883810 Depends: gensoft-diamond-0.9.30, gensoft-libxml2-2.9.10, gensoft-libiconv-1.16, gensoft-adm-perl-5.30.1, gensoft-expat-2.2.9, gensoft-xz-5.2.4, gensoft-hmmer-3.3, gensoft-mcl-14-137, gensoft-muscle-3.8.1551, gensoft-blast+-2.10.0, libc6, gensoft-metageneannotator-2008-8-19 Filename: pool/main/gensoft-virsorter-1.0.6_1.0_amd64.deb Size: 4184049792 MD5sum: 357ae24cf63a6e0b6c6a885a5c02c5ca SHA1: 2275dff8e39a18bbb3c9d3b7641f6e7727a0d4fc SHA256: b8834bae0eabe90017b59f01d3123cfeb6c6dc874cc3c31a83e3461ca6bad47e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: mining viral signal from microbial genomic data License: unknown Vendor: Institut Pasteur Package: gensoft-virsorter-2.2.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 93733 Depends: gensoft-xz-5.2.4, gensoft-libiconv-1.16, gensoft-diamond-0.9.30, gensoft-blast+-2.10.0, libgcc-s1, gensoft-libxml2-2.9.10, gensoft-adm-perl-5.30.1, gensoft-metageneannotator-2008-8-19, libstdc++6, gensoft-mcl-14-137, gensoft-adm-python-3.8.1, libc6, gensoft-expat-2.2.9, gensoft-muscle-3.8.1551, gensoft-hmmer-3.3 Filename: pool/main/gensoft-virsorter-2.2.2_1.0_amd64.deb Size: 51842110 MD5sum: 28543488ced94b46846f45e201d3025f SHA1: 4eb327a38d614ad07770377fe3779768e905574d SHA256: bf741d754760398abc69db50c718fd241b48cefaa3113f465f0c505db9eb8ea5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: mining viral signal from microbial genomic data License: unknown Vendor: Institut Pasteur Package: gensoft-virsorter-2.2.3 Version: 3.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 365014 Depends: gensoft-adm-python-3.8.1, libgcc-s1, libstdc++6, gensoft-hmmer-3.3.2, zlib1g, gensoft-mcl-14-137, gensoft-muscle-5.1, libc6, gensoft-prodigal-2.6.3.pp1, gensoft-blast+-2.12.0, gensoft-diamond-2.0.14 Filename: pool/main/gensoft-virsorter-2.2.3_3.0_amd64.deb Size: 120971436 MD5sum: 472c30c3a00ca6ac4a2845326c3c26b3 SHA1: 613210ed11cfd4a1c0f86498234fe5737496fe9d SHA256: 77aa50808622353f8df19d7d4f20f8ff9635d0972383af51c2cab585fdd7a885 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: mining viral signal from microbial genomic data License: unknown Vendor: Institut Pasteur Package: gensoft-virtualgl-2.6.5 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 5347 Depends: gensoft-xorg-libs-1.1, gensoft-libjpeg-turbo-2.0.6, gensoft-mesa-19.0.8, gensoft-gcc-9.2.0, gensoft-expat-2.2.9, libc6, libssl1.1, zlib1g, libgcc-s1, gensoft-glu-9.0.1, gensoft-libdrm-2.4.100 Filename: pool/main/gensoft-virtualgl-2.6.5_1.0_amd64.deb Size: 2185766 MD5sum: de8baf35a61e993632cc721af051b35c SHA1: 1dbdbcd234bc91937a74f44d064ac840c0ffc8b7 SHA256: 06a5070f98cda65befbb289fe199503a3daf0357b8ddb78aa8b2aec0d20de48a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: VirtualGL is an open source toolkit that gives any Unix or Linux remote display software the ability to run OpenGL applications with full 3D hardware acceleration. License: unknown Vendor: Institut Pasteur Package: gensoft-virtualgl-3.0.2 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 5797 Depends: libssl1.1, libc6, gensoft-libdrm-2.4.100, gensoft-gcc-9.2.0, libgcc-s1, gensoft-expat-2.4.1, zlib1g, gensoft-mesa-19.0.8, gensoft-xorg-libs-1.1, gensoft-glu-9.0.1, gensoft-libjpeg-turbo-2.0.6 Filename: pool/main/gensoft-virtualgl-3.0.2_1.0_amd64.deb Size: 2377068 MD5sum: 3a81fcd7e05ca364b56a0b6d52e5a263 SHA1: d6291347671410629e8ac5a5d583707e9a4d47a3 SHA256: b6dd28b4b98c7c696b028d68b692a1ef6533142fb67e34ae84764e608583bb24 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: VirtualGL is an open source toolkit that gives any Unix or Linux remote display software the ability to run OpenGL applications with full 3D hardware acceleration. License: unknown Vendor: Institut Pasteur Package: gensoft-virulencefinder-2.0.4 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 140214 Depends: gensoft-blast+-2.13.0, gensoft-kma-1.3.4, libc6, zlib1g, libgcc-s1, gensoft-adm-python-3.7.6 Filename: pool/main/gensoft-virulencefinder-2.0.4_1.0_amd64.deb Size: 34888194 MD5sum: 00e4c30141fda1b1c6d0a331161e4a2c SHA1: 28397642300aa5a1501722d3c2dc53ba3a32ab0b SHA256: 8939aba19b240ee6fa2fa69a1cb722bb0c9fd738a1a3833bfa97fda52b247001 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: VirulenceFinder identifies virulence genes in total or partial sequenced isolates of bacteria - at the moment only E. coli, Enterococcus, S. aureus and Listeria are available. License: unknown Vendor: Institut Pasteur Package: gensoft-vmatch-2.3.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 32848 Depends: zlib1g, libc6, gensoft-adm-perl-5.30.1, libbz2-1.0, gensoft-genometools-1.6.1 Filename: pool/main/gensoft-vmatch-2.3.1_2.0_amd64.deb Size: 10201078 MD5sum: c0bcb03a047d51dd0fa29e3299779d85 SHA1: dfc9af2aeebdecaa1ce212136b8781c34db82a6b SHA256: 21b92442a1d2ebea00ab636624b84304f01807f076e324faf76d3b83e2881b9b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Transmembrane topology prediction License: unknown Vendor: Institut Pasteur Package: gensoft-vmd-plugins-1.9.3 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 71923 Depends: libc6, libgcc-s1, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-vmd-plugins-1.9.3_1.0_amd64.deb Size: 11706058 MD5sum: fcf96e31fe8c66b3c6afbe2f4e8732eb SHA1: c754900d1b4d3351da396d36e6af482702843850 SHA256: e2d3d5500da2bd7a04f9f0e528a459f15813e81ca196ae0a9a86745408f1c1a2 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: plugin interfaces which provide a means for extending VMD at run-time without the necessity to recompile the program License: unknown Vendor: Institut Pasteur Package: gensoft-vol-1.5.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 312 Depends: gensoft-coinutils-2.11.4, libc6, gensoft-osi-0.108.6, gensoft-lapack-3.9.0, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-vol-1.5.4_1.0_amd64.deb Size: 102716 MD5sum: 988bf6f13b2d9929ce805b2da73befc5 SHA1: dc03bf5933352a74e9240a8de17684807b6167fc SHA256: b1ae182e45671765c3a03a4be8a5df11d9062a742d529108a22a95facb5283d1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Vol (Volume Algorithm) is an open-source implementation of a subgradient method that produces primal as well as dual solutions. License: unknown Vendor: Institut Pasteur Package: gensoft-vsearch-2.14.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3988 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-vsearch-2.14.2_2.0_amd64.deb Size: 1543388 MD5sum: cb5e576ab8d867c54253babe30b289fc SHA1: e25586725767e1c3659bae018dccfcd3ae9012a4 SHA256: 6862898cf76b494dad0bb67151444cbc60c846aff0053937e846541e8dd56375 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tool for processing metagenomic sequences which supports searching, clustering, chimera detection, dereplication, sorting and masking. An alternative to the USEARCH tool developed by Robert C. Edgar (2010). License: unknown Vendor: Institut Pasteur Package: gensoft-vsearch-2.17.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3755 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-vsearch-2.17.0_2.0_amd64.deb Size: 1454328 MD5sum: f376f63b919f44ce9320362dc1e5d976 SHA1: cf7d0a6792250ca98d7367ab6367434ed6babe82 SHA256: 769315963841380574353c78e614f6c7f1e0d0abe43ebf3d4112a644937bca5b Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tool for processing metagenomic sequences which supports searching, clustering, chimera detection, dereplication, sorting and masking. An alternative to the USEARCH tool developed by Robert C. Edgar (2010). License: unknown Vendor: Institut Pasteur Package: gensoft-vsearch-2.29.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6986 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-vsearch-2.29.1_1.0_amd64.deb Size: 2703806 MD5sum: d34475824d7a7f69831535edb08950a8 SHA1: 987463158d6854db69d4942a9efd44bac057d1cc SHA256: ac0f124a0eba4663830e0222309fcc959e2c68809b42f3a217c4e6f4c6083b21 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tool for processing metagenomic sequences which supports searching, clustering, chimera detection, dereplication, sorting and masking. An alternative to the USEARCH tool developed by Robert C. Edgar (2010). License: unknown Vendor: Institut Pasteur Package: gensoft-vsearch-2.7.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3243 Depends: gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-vsearch-2.7.1_2.0_amd64.deb Size: 1081578 MD5sum: 082eb9e003e12cac34a3a14001c5601e SHA1: a43a3bbab99c0b1eeac2d2c587b2b2dcc09b3a45 SHA256: c858be62b96d623006c9c4305b6b3e59f2599aff22efd26a398bcda88493a918 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a tool for processing metagenomic sequences which supports searching, clustering, chimera detection, dereplication, sorting and masking. An alternative to the USEARCH tool developed by Robert C. Edgar (2010). License: unknown Vendor: Institut Pasteur Package: gensoft-vt-0.57721 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 6042 Depends: gensoft-curl-7.68.0, gensoft-gcc-9.2.0, libssl1.1, libc6, gensoft-xz-5.2.4, libbz2-1.0, zlib1g Filename: pool/main/gensoft-vt-0.57721_1.0_amd64.deb Size: 2256760 MD5sum: f1d408b49ca8fe2811df0bcd7df971ae SHA1: bdec0844b72a3819c1aaadbe15bf68d7ec183f26 SHA256: c76cc732cebe8d183acbc5bfead1f5750f48095e7b338ceb40254726aea8567e Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: vt is a variant tool set that discovers short variants from Next Generation Sequencing data. License: unknown Vendor: Institut Pasteur Package: gensoft-vtk-8.2.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 465806 Depends: gensoft-xorg-libs-1.1, gensoft-glu-9.0.1, gensoft-libdrm-2.4.100, gensoft-mesa-19.0.8, gensoft-gcc-9.2.0, zlib1g, gensoft-expat-2.2.9, libc6 Filename: pool/main/gensoft-vtk-8.2.0_1.0_amd64.deb Size: 134428224 MD5sum: 233e39989688d60d962c1fc6c4b7ebd3 SHA1: 1c771547c9739b893a651acf155e3ae6cdb5c3ec SHA256: d3ff8644d0d9f868a0153e37910aa0326118708e26ce667d77a87d513ef099eb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Visualization Toolkit (VTK) is open source software for manipulating and displaying scientific data. It comes with state-of-the-art tools for 3D rendering, a suite of widgets for 3D interaction, and extensive 2D plotting capability. License: unknown Vendor: Institut Pasteur Package: gensoft-w2rap-contigger-docker Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 37249 Depends: gensoft-gcc-9.2.0, zlib1g, libc6 Filename: pool/main/gensoft-w2rap-contigger-docker_1.0_amd64.deb Size: 12476226 MD5sum: 104706e6c38ca0df6ca184de8cb8b5fe SHA1: caac1c6722eb2495c53b999dde53bb38572d8f6e SHA256: 990000423a33c042805ae9de234ffcfbd5d423b4f357d57a2478574c88cd0a1b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes License: unknown Vendor: Institut Pasteur Package: gensoft-wayland-1.19.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1293 Depends: gensoft-expat-2.2.9, gensoft-libiconv-1.16, gensoft-libxml2-2.9.10, gensoft-libffi-3.2.1, gensoft-xz-5.2.4 Filename: pool/main/gensoft-wayland-1.19.0_1.0_amd64.deb Size: 403614 MD5sum: e4e4b7921fd833de4fb1a46222d586d6 SHA1: 932b7baee0332355d24e88aadec80ba3d6ba0936 SHA256: cc2c6e9da53d4f78eb4a240e7c7a30ddcbc91ff205762b676a9eaf1ec53b6bfb Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Wayland is a protocol for a compositor to talk to its clients as well as a C library implementation of that protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers. License: unknown Vendor: Institut Pasteur Package: gensoft-wayland-protocols-1.20 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 408 Filename: pool/main/gensoft-wayland-protocols-1.20_1.0_amd64.deb Size: 88004 MD5sum: 696ae5328f80936832b8b023bc0c77e2 SHA1: 875eec0d3f06e1499c6509652f79f64570d6bea7 SHA256: 8ad61999f19662e72b1e8617fd76bd71a69bfdd4a638946b1da41ab55c12973d Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Wayland is a protocol for a compositor to talk to its clients as well as a C library implementation of that protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers. License: unknown Vendor: Institut Pasteur Package: gensoft-weblogo-2.8.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 296 Depends: gensoft-imagemagick-6.9.10-91, gensoft-adm-perl-5.30.1, gensoft-ghostscript-9.50 Filename: pool/main/gensoft-weblogo-2.8.2_1.0_amd64.deb Size: 178504 MD5sum: dd0a915bb25b000ff62610a96fdeda86 SHA1: 6ddbd0f6c85ec7c5c938554607b8fa886c97114e SHA256: f27efcfe58611b173eb9b1caef702af56da645ddc35d47b7ddc1f610f02e37ae Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: application designed to make the generation of sequence logos as easy and painless as possible License: unknown Vendor: Institut Pasteur Package: gensoft-weblogo-3.7.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 147084 Depends: gensoft-adm-python-3.8.1, gensoft-ghostscript-9.50 Filename: pool/main/gensoft-weblogo-3.7.4_1.0_amd64.deb Size: 46986344 MD5sum: 5d8a5e3276f66af4b2b330fe47ebbf07 SHA1: 047bcd83d13902cd4ebd1d02d1fdb6f6a96a8fde SHA256: f4c16e80dab2b40fe0a9d674b72017ec90ec1dfd2023a92563a1ae5708ce6f35 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: application designed to make the generation of sequence logos as easy and painless as possible License: unknown Vendor: Institut Pasteur Package: gensoft-weighbor-1.2.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 102 Depends: libc6 Filename: pool/main/gensoft-weighbor-1.2.1_1.0_amd64.deb Size: 46108 MD5sum: 4c0fb00e29d0cfb8a62713967088b539 SHA1: c8e8db1dcfdd1b8dc8483e152e5b8ed8e880ed13 SHA256: 1999eef324014d5a11293ebf51d022e80dd775426d6e87c8a1a7b993a44c071a Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Weighted Neighbor Joining License: unknown Vendor: Institut Pasteur Package: gensoft-wfa2-lib-2.3.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 699 Depends: libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-wfa2-lib-2.3.5_1.0_amd64.deb Size: 210134 MD5sum: e974cb6121dc23ae28fd88b20d71028d SHA1: c86ce40a76c83a0dad807a0276fd277b7575dbf2 SHA256: 8310fbc9e40c0ef9b5fd012ae59f616b83d861f7739e94da246949b75790c568 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Wavefront alignment algorithm library v2 License: unknown Vendor: Institut Pasteur Package: gensoft-wfmash-0.10.2 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2002 Depends: gensoft-gcc-9.2.0, libssl1.1, gensoft-jemalloc-5.2.1, gensoft-htslib-1.16, gensoft-gsl-2.6, gensoft-curl-7.68.0, libbz2-1.0, gensoft-xz-5.2.5, zlib1g, libc6 Filename: pool/main/gensoft-wfmash-0.10.2_2.0_amd64.deb Size: 715440 MD5sum: bddeb56b27aef360f87cb3338ebc9bef SHA1: 7cd3e7106ce82567b1e32d4d4f568aa009acdd4a SHA256: 00327908fd96618673d85ba5e7f5a7326279c70dee4ce511b617d22e22eb08a6 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A DNA sequence read mapper based on mash distances and the wavefront alignment algorithm. License: unknown Vendor: Institut Pasteur Package: gensoft-wfmash-0.7.0 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 18430 Depends: gensoft-gcc-9.2.0, libc6, zlib1g, gensoft-gsl-2.6, gensoft-jemalloc-5.2.1 Filename: pool/main/gensoft-wfmash-0.7.0_2.0_amd64.deb Size: 4077698 MD5sum: 7b183197eddd1b76cdeffd1899b4df6c SHA1: 105f726bbf5acc6e856ef01a72564af8493618cb SHA256: bafbc068145585e7a3c20c528fce1541058493d2a989256b8aa7e485b00c2f76 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A DNA sequence read mapper based on mash distances and the wavefront alignment algorithm. License: unknown Vendor: Institut Pasteur Package: gensoft-wfmash-0.9.1 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1933 Depends: zlib1g, libc6, libssl1.1, libbz2-1.0, gensoft-curl-7.68.0, gensoft-xz-5.2.5, gensoft-jemalloc-5.2.1, gensoft-gsl-2.6, gensoft-htslib-1.13, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-wfmash-0.9.1_2.0_amd64.deb Size: 699588 MD5sum: df95422ffb39c373a44a1e1da14f55e1 SHA1: 6c49c2f48f251b13c8ca43497df7e126946f6a6f SHA256: a2b64dbb4d4b43ec029c8a7161b4094edecc6cf64125b2967101a59518b315f3 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A DNA sequence read mapper based on mash distances and the wavefront alignment algorithm. License: unknown Vendor: Institut Pasteur Package: gensoft-wgs-8.3rc2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 65415 Depends: gensoft-gcc-9.2.0, zlib1g, gensoft-adm-perl-5.30.1, libc6, csh, gensoft-graalvm-ce-java8-20.0.0 Filename: pool/main/gensoft-wgs-8.3rc2_1.0_amd64.deb Size: 33211220 MD5sum: 3ae52618000c9aebd09873232410862a SHA1: 6525d543066c5f7eebdc7735936a088112c328a2 SHA256: 23f3a0ce075e7b13378c36d3929121973c9ac9e22ddd1730ccc584d6577856b1 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Celera Assembler is a de novo whole-genome shotgun (WGS) DNA sequence assembler. It reconstructs long sequences of genomic DNA from fragmentary data produced by whole-genome shotgun sequencing License: unknown Vendor: Institut Pasteur Package: gensoft-wiggletools-1.2.11 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 115116 Depends: gensoft-adm-python-2.7.17, gensoft-xz-5.2.4, gensoft-libbigwig-0.4.6, zlib1g, libstdc++6, libssl1.1, gensoft-htslib-1.13, gensoft-gsl-2.6, libgcc-s1, libbz2-1.0, libc6, gensoft-curl-7.68.0 Filename: pool/main/gensoft-wiggletools-1.2.11_1.0_amd64.deb Size: 37840650 MD5sum: ad4db80017a3819ae15a0b3de32d1800 SHA1: 36989bae5aa509aae6e8698bbac2af3e9f280fa3 SHA256: f1d341a4d5d491e76e224ea1f6afce002f640e630399bb717f520bf10c0936f5 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The WiggleTools package allows genomewide data files to be manipulated as numerical functions, equipped with all the standard functional analysis operators (sum, product, product by a scalar, comparators), and derived statistics (mean, median, variance, stddev, t-test, Wilcoxon s rank sum test, etc). License: unknown Vendor: Institut Pasteur Package: gensoft-wise2-2.4.1 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 13233 Depends: libc6, gensoft-glib-2.58.3 Filename: pool/main/gensoft-wise2-2.4.1_1.0_amd64.deb Size: 5238780 MD5sum: bf014512ee504cb8f2745d6f7f1bd9bf SHA1: 73a272043a05a2094896c641453b55f1085ee9b8 SHA256: cb45ab8c9cd681b0b1d679c8fbf7f1d5aa3804586d6d0927c30035b782f5d6ed Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A package focused on comparisons of bio polymers, commonly DNA sequence and protein sequence License: unknown Vendor: Institut Pasteur Package: gensoft-wisecondorx-1.2.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 405680 Depends: gensoft-adm-python-3.8.1, libc6, gensoft-r-4.3.0 Filename: pool/main/gensoft-wisecondorx-1.2.5_1.0_amd64.deb Size: 124122564 MD5sum: ccff4c1427b38676aa1e648b78dc5b16 SHA1: edd9fafe03ff519aba6cdbb8a2ee29832e42341b SHA256: 50851189e47809f5ba77b422378cd6f19349be7efb777fa41153104741e44c44 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: WisecondorX. An evolved (WISECONDOR WIthin-SamplE COpy Number aberration DetectOR) - Detect fetal trisomies and smaller CNV-s in a maternal plasma sample using whole-genome data. License: unknown Vendor: Institut Pasteur Package: gensoft-wisecondorx-1.2.9 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 383465 Depends: zlib1g, libgcc-s1, gensoft-r-4.4.0, libc6, gensoft-adm-python-3.8.1, libstdc++6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-wisecondorx-1.2.9_1.0_amd64.deb Size: 121376730 MD5sum: 4fbfb6ea10fe0913d73d9a2f81b4d80d SHA1: a4f0a4a5e036b36acee589ac6efda6a1c30686c5 SHA256: d9c3fed23743d60fd549a5fe7b8be8437eb8ee965001023d64a902d65a7c26e6 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: WisecondorX. An evolved (WISECONDOR WIthin-SamplE COpy Number aberration DetectOR) - Detect fetal trisomies and smaller CNV-s in a maternal plasma sample using whole-genome data. License: unknown Vendor: Institut Pasteur Package: gensoft-wish-1.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 329 Depends: gensoft-gcc-9.2.0, gensoft-r-4.4.0, libc6 Filename: pool/main/gensoft-wish-1.1_1.0_amd64.deb Size: 85222 MD5sum: eb61819d23e3d384c19fdfee2d3ee301 SHA1: 37b8ead859ec1b4169046700447d57c5f79104e2 SHA256: a2a7dacb49b071ed08892ea7d73f49b02e13d6b82a7679b65f4093a79e7e966f Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Predict prokaryotic host for phage metagenomic sequences License: unknown Vendor: Institut Pasteur Package: gensoft-wtdbg2-2.5 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 6779 Depends: libc6, gensoft-minimap2-2.28, gensoft-samtools-1.21, zlib1g Filename: pool/main/gensoft-wtdbg2-2.5_1.0_amd64.deb Size: 2372984 MD5sum: 8f7338e9d0051ca3cf440cf9933fc4bf SHA1: 3c99cc244bdaff6135973739a9472e43e48399ae SHA256: ede7f7ea64918e0213e777083740cd42e785ef1909fdf1f8b1c561ed3f0af438 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). License: unknown Vendor: Institut Pasteur Package: gensoft-wxwidgets-3.0.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 30508 Depends: gensoft-freetype-2.10.1, gensoft-harfbuzz-2.6.4, libbz2-1.0, libc6, gensoft-libffi-3.3, libpcre3, gensoft-cairo-1.16.0, gensoft-libjpeg-turbo-2.0.4, gensoft-gcc-9.2.0, gensoft-gtk+-2.24.32, gensoft-libpng-1.6.37, gensoft-atk-2.9.4, gensoft-glib-2.58.3, gensoft-libtiff-4.1.0, zlib1g, gensoft-pixman-0.38.4, libselinux1, gensoft-xorg-libs-1.1, gensoft-pcre2-10.34, gensoft-pango-1.42.4, gensoft-expat-2.2.9, gensoft-gdk-pixbuf-2.36.12, gensoft-xz-5.2.4, gensoft-fontconfig-2.13.91 Filename: pool/main/gensoft-wxwidgets-3.0.2_1.0_amd64.deb Size: 9811690 MD5sum: 58b3ebfd4862c104a5c97c160adb22e8 SHA1: b91b09f44a2781ed77591b37ae7536549a6ca593 SHA256: 8fcce8fa69a14074244da73f66f6c2279dd1341c14eb141e3bf917453f91f8ef Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base License: unknown Vendor: Institut Pasteur Package: gensoft-wxwidgets-3.1.3 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 32766 Depends: gensoft-fontconfig-2.13.91, gensoft-expat-2.2.9, libblkid1, libfribidi0, gensoft-harfbuzz-2.6.4, gensoft-xz-5.2.4, gensoft-atk-2.9.4, gensoft-libpng-1.6.37, gensoft-pango-1.42.4, gensoft-glib-2.58.3, gensoft-libjpeg-turbo-2.0.4, libselinux1, libpcre2-8-0, gensoft-gdk-pixbuf-2.36.12, libmount1, gensoft-xorg-libs-1.1, gensoft-gcc-9.2.0, libc6, libbz2-1.0, gensoft-libtiff-4.1.0, zlib1g, gensoft-freetype-2.10.1, gensoft-cairo-1.16.0, gensoft-libffi-3.3, gensoft-pixman-0.38.4, gensoft-gtk+-2.24.32, gensoft-pcre2-10.34 Filename: pool/main/gensoft-wxwidgets-3.1.3_1.0_amd64.deb Size: 10453908 MD5sum: 466490729e5f5cc6b5af8bc41136597b SHA1: 4bfe14c9a1b01ce1996012b56191910c16e148c0 SHA256: ae269605bb0431bb9fa1c642cf04fe79476e7415c043d9771f0e708c2da45e04 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base License: unknown Vendor: Institut Pasteur Package: gensoft-xcb-util-0.3.9 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 1254 Depends: gensoft-xorg-libs-1.1, libc6 Filename: pool/main/gensoft-xcb-util-0.3.9_1.0_amd64.deb Size: 334898 MD5sum: 8c84ac009a25d9b9a29d2b0a74c5999d SHA1: cfce2a65a852e115319597bff252490f166aa3b4 SHA256: 72b57548b3a20a67b2251b5b0be33bf6498362085044bf6481096e9595574b36 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: The XCB util modules provides a number of libraries which sit on top of libxcb, the core X protocol library, and some of the extension libraries. These experimental libraries provide convenience functions and interfaces which make the raw X protocol more usable. Some of the libraries also provide client-side code which is not strictly part of the X protocol but which have traditionally been provided by Xlib. License: unknown Vendor: Institut Pasteur Package: gensoft-xdrfile-1.1.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 219 Depends: libc6 Filename: pool/main/gensoft-xdrfile-1.1.4_1.0_amd64.deb Size: 74716 MD5sum: 985a26974e63b1896a46fb2f858a2039 SHA1: ab35568d174e79e6c4a95cc9392e6316af70b253 SHA256: b520be1d93acc6e74651159f46a4b7ef7f8827534a53a496645599e01aca6850 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: library to read GROMACS trr and xtc files and also to convert from one format to another. License: unknown Vendor: Institut Pasteur Package: gensoft-xerces-c-3.2.2 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 129181 Depends: gensoft-curl-7.68.0, zlib1g, libssl1.1, libc6, gensoft-gcc-9.2.0 Filename: pool/main/gensoft-xerces-c-3.2.2_1.0_amd64.deb Size: 30316734 MD5sum: 748af1a639303af90d4041684ee5a728 SHA1: 0f087e3162867d2cca3ca0979ad027d91a79e28a SHA256: c61cbce388f67c5ff840de601432662af9f0033bc8f10aa43b54b94b24310bdf Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A processor for parsing, validating, serializing and manipulating XML. 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License: unknown Vendor: Institut Pasteur Package: gensoft-xpdf-4.03 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 22799 Depends: gensoft-nettle-3.5.1, gensoft-gcc-9.2.0, gensoft-libpng-1.6.37, gensoft-glib-2.58.3, gensoft-fontconfig-2.13.91, gensoft-expat-2.2.9, gensoft-gmp-6.2.0, gensoft-icu-65.1, gensoft-pcre2-10.34, gensoft-gnutls-3.6.11, gensoft-harfbuzz-2.6.4, gensoft-ghostscript-9.50, gensoft-qt-5.12.1, gensoft-cups-2.3.1, gensoft-freetype-2.10.1 Filename: pool/main/gensoft-xpdf-4.03_1.0_amd64.deb Size: 7185236 MD5sum: 0d6f8173f6296a04782b30a80fec55aa SHA1: b30b729020f2a16aac3eda55613d4d1ca52ea189 SHA256: e881da16aa52227f0800af456d8d9eb55b9417b51dbf10f6498f2b3b339ad653 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Xpdf is a viewer for Adobe free Portable Document Format (PDF) which is both fast and small and comes with some useful command-line utilities License: unknown Vendor: Institut Pasteur Package: gensoft-xpound-na Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 2087 Depends: libc6 Filename: pool/main/gensoft-xpound-na_1.0_amd64.deb Size: 683614 MD5sum: 6bf28aab574171c98935c96e75e00ac4 SHA1: 0570ba45604630782d5141940be5892c4fe55c82 SHA256: fe0aa687cfb7ef3d0da527939e1a4c4d7e5e9dcdd5f121d45e36835280400ec7 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Software for exon trapping License: unknown Vendor: Institut Pasteur Package: gensoft-xxd-1.10 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 23 Depends: libc6 Filename: pool/main/gensoft-xxd-1.10_1.0_amd64.deb Size: 10124 MD5sum: c31ddd6271ccfb0d8311578874cf58b0 SHA1: a2f5f57ebd948df02d28150deeba35fcfcc275cd SHA256: b47d9eb7a6d253cb6c9bed1966d11a435c52cc3132b061f8e45da7ae115155b4 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: hexadecimal dump and undump utility in C. License: unknown Vendor: Institut Pasteur Package: gensoft-xxr-3.03 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 160 Depends: gensoft-adm-perl-5.30.1 Filename: pool/main/gensoft-xxr-3.03_2.0_amd64.deb Size: 50808 MD5sum: 040ed2b9740224c875ce7a64de8fdff5 SHA1: 3b8fa9677c1aac4450718300a88c3f174a0ba87c SHA256: e8b00269aac83b300b45142b1273c15f21c3038567f427640b64dccf3fdb6b6a Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: This software is able to extract putative cassette structures that fulfill the criteria established from analysis of previously known cassettes from integrons and superintegrons License: unknown Vendor: Institut Pasteur Package: gensoft-xz-5.2.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3851 Depends: libc6 Filename: pool/main/gensoft-xz-5.2.4_1.0_amd64.deb Size: 1131988 MD5sum: dd2452346781fa2f62a5b9a1b6bd10da SHA1: f8a095a5ec79281d170c2ccef96d3fa9c1f27330 SHA256: 4ac6043992aca6e67bc84b219a3a1dff4502b257455d8792769565fbd6353e7b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: XZ Utils is free general-purpose data compression software with a high compression ratio License: unknown Vendor: Institut Pasteur Package: gensoft-xz-5.2.5 Version: 1.0 Architecture: amd64 Maintainer: hpc@pasteur.fr Installed-Size: 4083 Depends: libc6 Filename: pool/main/gensoft-xz-5.2.5_1.0_amd64.deb Size: 1190984 MD5sum: 195207a5d7926fe9d4c8dd1023c7c41f SHA1: d8335d39da00bd27bdc9f635f338382613f6bf46 SHA256: 6a91e8173f8eb9f4e3c60b7f04c3883ed89232cc0ae55643b3b3b87b97b47f30 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: XZ Utils is free general-purpose data compression software with a high compression ratio License: unknown Vendor: Institut Pasteur Package: gensoft-yacc-1.9 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 387 Depends: libc6 Filename: pool/main/gensoft-yacc-1.9_2.0_amd64.deb Size: 148674 MD5sum: 24b870b0f612469fed4d1f6da3c76979 SHA1: 55ae533a38a340add654ac02aa3eeff365c6f9da SHA256: 1427633a24734e36a5d337275e18a3aaf3a100e00f67bb68beff983611b28183 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: yacc (Yet Another Compiler-Compiler) an LALR parser generator License: unknown Vendor: Institut Pasteur Package: gensoft-yara-v0.9.11 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 10665 Depends: gensoft-gcc-9.2.0, gensoft-zlib-1.2.11, libc6 Filename: pool/main/gensoft-yara-v0.9.11_1.0_amd64.deb Size: 2274760 MD5sum: 11e207cdab8001ebe4aa74d29263693b SHA1: d41f30be17e5f9d0896572f38c8b537c7562cdbb SHA256: 1367b2449f4907c938052e4cc0c057ab8e3df57395d43ae4851e3f93dfcf466b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Yara is yet another read aligner. License: unknown Vendor: Institut Pasteur Package: gensoft-yasm-1.3.0 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 14133 Depends: libc6 Filename: pool/main/gensoft-yasm-1.3.0_1.0_amd64.deb Size: 4648912 MD5sum: e191e9e8bf67855158ed43239b2a2756 SHA1: 4d6f9d03a9a75a292d733b09c677695af73e343f SHA256: 1066fe1d0ca89114857db866891b8c59ae6659d81d2292c280bc471e91aead25 Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Yasm is a complete rewrite of the NASM-2.15.05 assembler. It supports the x86 and AMD64 instruction sets, accepts NASM and GAS assembler syntaxes and outputs binary, ELF32 and ELF64 object formats. License: unknown Vendor: Institut Pasteur Package: gensoft-z3-4.8.9 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 1120312 Depends: gensoft-gmp-6.2.0, gensoft-gcc-9.2.0, libc6 Filename: pool/main/gensoft-z3-4.8.9_2.0_amd64.deb Size: 355452014 MD5sum: 9caad70c4250fcdc99798a75f3c0b3a7 SHA1: b9643f258becd1842e1cf3b82be3ff8cd596deb0 SHA256: 712059ed72dd2b2daeeabda67108a97b2ab3082598b5bf5b93e43568140f8db9 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: The Z3 Theorem Prover License: unknown Vendor: Institut Pasteur Package: gensoft-zlib-1.2.11 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 564 Depends: libc6 Filename: pool/main/gensoft-zlib-1.2.11_1.0_amd64.deb Size: 210480 MD5sum: 892865170e6bfff508ca84900f560704 SHA1: 04fe48f420cea45f271e83cf36be89b7371a864a SHA256: e2b7f9cb2ee22655102dabfa193fde48dee305f0dff90ddaf796f423ee6e575b Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: A Massively Spiffy Yet Delicately Unobtrusive Compression Library License: unknown Vendor: Institut Pasteur Package: gensoft-zlib-1.3.1 Version: 1.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 2090 Depends: libc6 Filename: pool/main/gensoft-zlib-1.3.1_1.0_amd64.deb Size: 1664596 MD5sum: 08db5e1259980c0af8d5645dfb9294f8 SHA1: 9cbba32ff435cd5862c4590fc0ff814019bbc204 SHA256: e5cfa0483c78219a9a4f42343b1fdaa2cfb049e046493e53cf97073f2da40c0c Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: A Massively Spiffy Yet Delicately Unobtrusive Compression Library License: unknown Vendor: Institut Pasteur Package: gensoft-zstd-1.4.4 Version: 1.0 Architecture: amd64 Maintainer: edeveaud@pasteur.fr Installed-Size: 3417 Depends: libc6, zlib1g Filename: pool/main/gensoft-zstd-1.4.4_1.0_amd64.deb Size: 1407734 MD5sum: 4f44417c5f4df9b2674e5e578b797c90 SHA1: 8670676a68858a38dfddf08977a75a01609c1c72 SHA256: 77fba47cc0b26990e03f341fee62f24bd4cdd5ff3373bfe81f06e1ab4ad1fd8c Section: default Priority: extra Homepage: http://example.com/no-uri-given Description: Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression / speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. License: unknown Vendor: Institut Pasteur Package: gensoft-zstd-1.5.4 Version: 2.0 Architecture: amd64 Maintainer: gensoft@pasteur.fr Installed-Size: 3757 Depends: gensoft-xz-5.2.5, libc6, zlib1g, gensoft-lz4-1.9.2 Filename: pool/main/gensoft-zstd-1.5.4_2.0_amd64.deb Size: 1557938 MD5sum: ee70225ae54db555c8c5c39f1d0fd88f SHA1: 051abba654902072e751601ff2eea5198e80635d SHA256: 0b67eef2f1a38ffc7512046a895e55c120faa917e93a6f853821c62eb84f7b50 Section: default Priority: optional Homepage: http://example.com/no-uri-given Description: Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression / speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. License: unknown Vendor: Institut Pasteur