# packages

pkgId: 271e970f4a7b8f5de6a7234793f864bee06547ac032dbf4f8688c442d0c66552
name: gensoft-kmernorm-1.05
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 39c1b0dce0d3
rpm_sourcerpm: gensoft-kmernorm-1.05-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-kmernorm-1.05-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  normalizes the kmer depth to the target coverage using sampling method and filters the reads according to the cutoff threshold.

description:
  normalizes the kmer depth to the target coverage using sampling method and filters the reads according to the cutoff threshold.


pkgId: 81519f48892d8bf33a60b216f2f54c0fa24f1309140c7f6c07c29c4d480f0ca9
name: gensoft-kraken-2.1.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 41bbf2fb8157
rpm_sourcerpm: gensoft-kraken-2.1.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-kraken-2.1.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies

description:
  Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies


pkgId: b0df6173d2dcf95a19e5b2290a9e239802d967834198778b9cfea925678bc6da
name: gensoft-ktreedist-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: bd277a416a11
rpm_sourcerpm: gensoft-ktreedist-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ktreedist-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Calculate the minimum branch length distance (or K tree score) from one phylogenetic tree to another. The K tree score provides a measure of the difference in both topology and branch lengths between two trees after scaling one of them to have a global divergence as similar as possible to the other tree

description:
  Calculate the minimum branch length distance (or K tree score) from one phylogenetic tree to another. The K tree score provides a measure of the difference in both topology and branch lengths between two trees after scaling one of them to have a global divergence as similar as possible to the other tree


pkgId: f9f3a755df581d797bf429a7e739e6e45615ed804adf44231498fbc2ebe88f69
name: gensoft-kyoto-20170410
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 370f8feaca92
rpm_sourcerpm: gensoft-kyoto-20170410-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-kyoto-20170410-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Kyoto Tycoon is a lightweight network server on top of the Kyoto Cabinet key-value database, built for high-performance and concurrency.

description:
  Kyoto Tycoon is a lightweight network server on top of the Kyoto Cabinet key-value database, built for high-performance and concurrency.


pkgId: dc90707b31012ab3d5000b7c3ed8467107eead78ee7344332796ac18439ff2ee
name: gensoft-lagan-2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c4d1aa11e2b5
rpm_sourcerpm: gensoft-lagan-2.0-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-lagan-2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Tools for genomic alignment. These include the MLAGAN multiple alignment tool, and Shuffle-LAGAN for alignment with rearrangements. All three are based on the CHAOS local alignment tool and combine speed (regions up to several megabases can be aligned in minutes) with high accuracy.

description:
  Tools for genomic alignment. These include the MLAGAN multiple alignment tool, and Shuffle-LAGAN for alignment with rearrangements. All three are based on the CHAOS local alignment tool and combine speed (regions up to several megabases can be aligned in minutes) with high accuracy.


pkgId: fbb78a86c4dcdd43974c7ccdc71e29b62735ef747d1382e3223144a2da73847c
name: gensoft-lammps-2016.11.17
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: matlab
rpm_sourcerpm: gensoft-lammps-2016.11.17-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-lammps-2016.11.17-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator.

description:
  a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator.


pkgId: 3f1948a9beb546728b8ff9b21bd0601a7ee4263066c5d13282fc2cd4fab38e6e
name: gensoft-lap-1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5875f2fdf0c0
rpm_sourcerpm: gensoft-lap-1.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-lap-1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a de novo probabilistic measure of assembly quality which allows an objective comparison of multiple assemblies generated from a same set of reads. Specifically, we define the quality of an assembly as the conditional probability of the sequenced reads given the sequence output by the assembler, value maximized by the true genome sequence.

description:
  a de novo probabilistic measure of assembly quality which allows an objective comparison of multiple assemblies generated from a same set of reads. Specifically, we define the quality of an assembly as the conditional probability of the sequenced reads given the sequence output by the assembler, value maximized by the true genome sequence.


pkgId: 46c2b4294e5634a3fc96b9af327eb4d23588d329a14223829682c7209245a367
name: gensoft-lapack-3.10.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a996451f047c
rpm_sourcerpm: gensoft-lapack-3.10.0-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-lapack-3.10.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a Fortran 90 library that provides routines for solving systems of simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue problems, and singular value problems. The associated matrix factorizations (LU, Cholesky, QR, SVD, Schur, generalized Schur) are also provided, as are related computations such as reordering of the Schur factorizations and estimating condition numbers. Dense and banded matrices are handled, but not general sparse matrices. In all areas, similar functionality is provided for real and complex matrices, in both single and double precision

description:
  a Fortran 90 library that provides routines for solving systems of simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue problems, and singular value problems. The associated matrix factorizations (LU, Cholesky, QR, SVD, Schur, generalized Schur) are also provided, as are related computations such as reordering of the Schur factorizations and estimating condition numbers. Dense and banded matrices are handled, but not general sparse matrices. In all areas, similar functionality is provided for real and complex matrices, in both single and double precision


pkgId: 0ee7350c98e48539074a562dd65ae5fc6b12354924f736b1b61ebc459b917668
name: gensoft-lastz-1.04.03
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0795a7d8147c
rpm_sourcerpm: gensoft-lastz-1.04.03-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-lastz-1.04.03-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  LASTZ is a program for aligning DNA sequences, a pairwise aligner.  Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.

description:
  LASTZ is a program for aligning DNA sequences, a pairwise aligner.  Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.


pkgId: a5761e9ba366ca4c90e35b9ebbef70a95ef58bc3aa665dea6eb768bbe045ee95
name: gensoft-lcms2-2.9
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: fe73dcd520b6
rpm_sourcerpm: gensoft-lcms2-2.9-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-lcms2-2.9-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.

description:
  Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.


pkgId: e97414a06694894b539a54140b943e2d8d0c5843387c163597d685083e8718b2
name: gensoft-leptonica-1.85.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-leptonica-1.85.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-leptonica-1.85.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Leptonica is an open source library containing software that is broadly useful for image processing and image analysis applications

description:
  Leptonica is an open source library containing software that is broadly useful for image processing and image analysis applications


pkgId: 2f149da0f9456260296a591363683c10074630bc4e35441c78ddc88dda950fa1
name: gensoft-lerc-4.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-lerc-4.0.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-lerc-4.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte).

description:
  an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte).


pkgId: 9a2b9821b0ea6b9d140b7e1e1a6037ea2ec420e7632b8fd4b10b201757a81db7
name: gensoft-libaec-1.0.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 660b85547589
rpm_sourcerpm: gensoft-libaec-1.0.6-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-libaec-1.0.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Adaptive Entropy Coding library provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers (samples).

description:
  Adaptive Entropy Coding library provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers (samples).


pkgId: f1169c579c2060521fd40b87c571c84f7fb5dae104e3f6212ad90ed99033225b
name: gensoft-libaio-0.3.110
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 737dd7cb94b6
rpm_sourcerpm: gensoft-libaio-0.3.110-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-libaio-0.3.110-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The Linux-native asynchronous I/O facility ("async I/O", or "aio") has a richer API and capability set than the simple POSIX async I/O facility. This library, libaio, provides the Linux-native API for async I/O. The POSIX async I/O facility requires this library in order to provide kernel-accelerated async I/O capabilities, as do applications which require the Linux-native async I/O API.

description:
  The Linux-native asynchronous I/O facility ("async I/O", or "aio") has a richer API and capability set than the simple POSIX async I/O facility. This library, libaio, provides the Linux-native API for async I/O. The POSIX async I/O facility requires this library in order to provide kernel-accelerated async I/O capabilities, as do applications which require the Linux-native async I/O API.


pkgId: f69b42e241bbd3dcf799ddab4a1d70b57271e1a8970272df0e4e2e9c54a5265e
name: gensoft-libbam-0.1.19
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-libbam-0.1.19-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libbam-0.1.19-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The BAM library provides I/O and various operations on manipulating nucleotide sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence Alignment/Map) format.

description:
  The BAM library provides I/O and various operations on manipulating nucleotide sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence Alignment/Map) format.


pkgId: 44a4a92bb97a6cf0dcab9e8a7eff8936862757dc25c46e07703a3eb945770223
name: gensoft-libccd-2.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3239d22bd3bc
rpm_sourcerpm: gensoft-libccd-2.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libccd-2.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  libccd is library for a collision detection between two convex shapes. libccd implements variation on Gilbert-Johnson-Keerthi algorithm plus Expand Polytope Algorithm (EPA) and also implements algorithm Minkowski Portal Refinement (MPR, a.k.a. XenoCollide)

description:
  libccd is library for a collision detection between two convex shapes. libccd implements variation on Gilbert-Johnson-Keerthi algorithm plus Expand Polytope Algorithm (EPA) and also implements algorithm Minkowski Portal Refinement (MPR, a.k.a. XenoCollide)


pkgId: bd1e6a30437e54a31e920f8eee078d09cdab6b523427faa85ad37af4ae5deec3
name: gensoft-libcerf-1.13
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-libcerf-1.13-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libcerf-1.13-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.

description:
  a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.


pkgId: c677437741d8693da2a9ce4bcbdbbc28b496e5e6a0f0f1ad0e1be0f75d9955d8
name: gensoft-libdrm-2.4.100
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-libdrm-2.4.100-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libdrm-2.4.100-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  LIBDRM is the cross-driver middleware which allows user-space applications (such as Mesa and 2D drivers) to communicate with the Kernel by the means of the DRI protocol

description:
  LIBDRM is the cross-driver middleware which allows user-space applications (such as Mesa and 2D drivers) to communicate with the Kernel by the means of the DRI protocol


pkgId: 4d7abd542cd1d2b3b4f90937a01123c3b0fdfb614ace55c643f2d0c8af312eef
name: gensoft-libgeotiff-1.7.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-libgeotiff-1.7.4-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-libgeotiff-1.7.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  library designed to permit the extraction and parsing of the "GeoTIFF" Key directories, as well as definition and installation of GeoTIFF keys in new files.

description:
  library designed to permit the extraction and parsing of the "GeoTIFF" Key directories, as well as definition and installation of GeoTIFF keys in new files.


pkgId: 24343fef8c1d4ae51d8cf9f1df1ae7b127cf91b834f591218138b9b14048c5e5
name: gensoft-libgit2-0.28.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-libgit2-0.28.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libgit2-0.28.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.

description:
  libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.


pkgId: 0dbefc4d36e6fcd37c99e0908b86aec09f81047afb0b8a48270e07a11eabcfd8
name: gensoft-libimagequant-2.12.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-libimagequant-2.12.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libimagequant-2.12.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Small, portable C library for high-quality conversion of RGBA images to 8-bit indexed-color (palette) images.

description:
  Small, portable C library for high-quality conversion of RGBA images to 8-bit indexed-color (palette) images.


pkgId: 9be542491eeb0a24e7ed52fa576e944aa4cfe59fe5e03123abd101a55bbaa4db
name: gensoft-libjpeg-turbo-2.0.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-libjpeg-turbo-2.0.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libjpeg-turbo-2.0.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  libjpeg-turbo is a JPEG image codec that uses SIMD instructions (MMX, SSE2, AVX2, NEON, AltiVec) to accelerate baseline JPEG compression and decompression on x86, x86-64, ARM, and PowerPC systems.

description:
  libjpeg-turbo is a JPEG image codec that uses SIMD instructions (MMX, SSE2, AVX2, NEON, AltiVec) to accelerate baseline JPEG compression and decompression on x86, x86-64, ARM, and PowerPC systems.


pkgId: f1338ede89a8cd7c4cfc41c12cad001f6abc897248ec275d98448cb70c7b4070
name: gensoft-libmng-2.0.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-libmng-2.0.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libmng-2.0.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  libmng -THE reference library for reading, displaying, writing and examining Multiple-Image Network Graphics. MNG is the animation extension to the popular PNG image-format.

description:
  libmng -THE reference library for reading, displaying, writing and examining Multiple-Image Network Graphics. MNG is the animation extension to the popular PNG image-format.


pkgId: c68b227e762f36804277a89549fbf8c341fddfe83b7331acd5128fab40eff26c
name: gensoft-libmolgrid-0.2.1
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c893fc4c2654
rpm_sourcerpm: gensoft-libmolgrid-0.2.1-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-libmolgrid-0.2.1-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  libmolgrid is a library to generate tensors from molecular data, with properties that make its output particularly suited to machine learning

description:
  libmolgrid is a library to generate tensors from molecular data, with properties that make its output particularly suited to machine learning


pkgId: eb4f85bcbea6bec0caff34491bebcfe89ad0f1a8da0bcf73a1bec2ac35182e74
name: gensoft-librsvg-2.50.3
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9664914c26d4
rpm_sourcerpm: gensoft-librsvg-2.50.3-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-librsvg-2.50.3-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  This is librsvg - A small library to render Scalable Vector Graphics (SVG), associated with the GNOME Project.

description:
  This is librsvg - A small library to render Scalable Vector Graphics (SVG), associated with the GNOME Project.


pkgId: b8d07dddd02d6e24f72c628c9e0c6f66f71927b3ac169c5669d18052425835fd
name: gensoft-libsvm-324
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 03ab69429323
rpm_sourcerpm: gensoft-libsvm-324-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-libsvm-324-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Libsvm is a simple, easy-to-use, and efficient software for SVM classification and regression. It solves C-SVM classification, nu-SVM classification, one-class-SVM, epsilon-SVM regression, and nu-SVM regression. It also provides an automatic model selection tool for C-SVM classification.

description:
  Libsvm is a simple, easy-to-use, and efficient software for SVM classification and regression. It solves C-SVM classification, nu-SVM classification, one-class-SVM, epsilon-SVM regression, and nu-SVM regression. It also provides an automatic model selection tool for C-SVM classification.


pkgId: eba554ce41fbbb800868191b2a569fe509510f34eb076434b0caca77a655b932
name: gensoft-libsysconfcpu-0.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 69212bef6c6b
rpm_sourcerpm: gensoft-libsysconfcpu-0.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libsysconfcpu-0.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  libsysconfcpus is an LD_PRELOAD library that intercepts calls to sysconf(), and adjusts the responses for _SC_NPROCESSORS_CONF and _SC_NPROCESSORS_ONLN, which are used to determine the number of processors available (either configured or online) at runtime in a system. Unfortunately, some closed- source software assumes that all of these processors may be used for computation, which is an assumption that is frequently not true on multiuser and HPC systems. Thus, libsysconfcpus provides a simple, non-intrusive way of adjusting the behaviour of such software (when it is dynamically linked).

description:
  libsysconfcpus is an LD_PRELOAD library that intercepts calls to sysconf(), and adjusts the responses for _SC_NPROCESSORS_CONF and _SC_NPROCESSORS_ONLN, which are used to determine the number of processors available (either configured or online) at runtime in a system. Unfortunately, some closed- source software assumes that all of these processors may be used for computation, which is an assumption that is frequently not true on multiuser and HPC systems. Thus, libsysconfcpus provides a simple, non-intrusive way of adjusting the behaviour of such software (when it is dynamically linked).


pkgId: 9cc7f1b781d4b26e195ca70f12a760307d4efe17cf90df97d24dc16693d7a7cc
name: gensoft-libtool-2.4.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-libtool-2.4.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libtool-2.4.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.

description:
  GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.


pkgId: 7071e2c96d51604b20ea13ca9a63025aa5349ba47fb78919a1626f149cfb00a8
name: gensoft-libunwind-1.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-libunwind-1.3.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libunwind-1.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto).

description:
  a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto).


pkgId: 3ffb8d98ce0cb78c0c865d39edf01bfad57b5fe37b149a6c7fef93b5bcfd250d
name: gensoft-libwebp-1.1.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 91e675008fb8
rpm_sourcerpm: gensoft-libwebp-1.1.0-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-libwebp-1.1.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  library to encode and decode images in WebP format. This package contains the library that can be used in other programs to add WebP support, as well as the command line tools cwebp and dwebp.

description:
  library to encode and decode images in WebP format. This package contains the library that can be used in other programs to add WebP support, as well as the command line tools cwebp and dwebp.


pkgId: 80e5caec8fe213b3e8fed054197380451ccb221114aa3d5515cb9d0795775b2a
name: gensoft-libxkbcommon-0.8.4
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-libxkbcommon-0.8.4-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-libxkbcommon-0.8.4-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  xkbcommon is a library for handling of keyboard descriptions, including loading them from disk, parsing them and handling their state. Its mainly meant for client toolkits, window systems, and other system applications

description:
  xkbcommon is a library for handling of keyboard descriptions, including loading them from disk, parsing them and handling their state. Its mainly meant for client toolkits, window systems, and other system applications


pkgId: 30b2a9533389c37d704c07d9bb22ef55e5d7e5b2b1a979b7b02e4ac4d7e3075e
name: gensoft-lofreq-2.1.4
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c893fc4c2654
rpm_sourcerpm: gensoft-lofreq-2.1.4-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-lofreq-2.1.4-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data.

description:
  a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data.


pkgId: 242cfe6ffa2dc81b5b8c8e729e1949b761d2a083ef922a4312549eb434b9eba0
name: gensoft-lrge-0.1.3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-lrge-0.1.3-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-lrge-0.1.3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Long Read-based Genome size Estimation from overlaps.  LRGE (pronounced large) is a command line tool for estimating genome size from long read overlaps. The tool is built on top of the liblrge Rust library, which is also available as a standalone library for use in other projects.

description:
  Long Read-based Genome size Estimation from overlaps.  LRGE (pronounced large) is a command line tool for estimating genome size from long read overlaps. The tool is built on top of the liblrge Rust library, which is also available as a standalone library for use in other projects.


pkgId: 6321a37b94c5af358e4e3e67709c4a8281d5452911ea5755c2ba5d534ed5ee13
name: gensoft-lua-5.1.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-lua-5.1.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-lua-5.1.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.

description:
  Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.


pkgId: a293073fc97f200b9113e68840b2866d6b0d457d18d2f9b2a26d225b2b59fd9c
name: gensoft-m4-1.4.18
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 826e3363b94a
rpm_sourcerpm: gensoft-m4-1.4.18-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-m4-1.4.18-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GNU M4 is an implementation of the traditional Unix macro processor. GNU M4 is a macro processor in the sense that it copies its input to the output expanding macros as it goes.

description:
  GNU M4 is an implementation of the traditional Unix macro processor. GNU M4 is a macro processor in the sense that it copies its input to the output expanding macros as it goes.


pkgId: d7f653534c59928e8b1dcc17065dfe5247cebcd81471f23b5860936915a4f1f8
name: gensoft-mSWEEP-1.6.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ad11ad1309d9
rpm_sourcerpm: gensoft-mSWEEP-1.6.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-mSWEEP-1.6.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Fast and accurate bacterial community composition estimation on strain level by using pseudoalignments and variational inference.

description:
  Fast and accurate bacterial community composition estimation on strain level by using pseudoalignments and variational inference.


pkgId: c46e08a0c0d0b1d7e36c9040d8e36a397e4aad91cdfd6d1f57c035528e1bdd13
name: gensoft-mach-1.0.18
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5688b41363fb
rpm_sourcerpm: gensoft-mach-1.0.18-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-mach-1.0.18-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A Markov Chain based haplotyper. It can resolve long haplotypes or infer missing genotypes in samples of unrelated individuals

description:
  A Markov Chain based haplotyper. It can resolve long haplotypes or infer missing genotypes in samples of unrelated individuals


pkgId: 4f06f95ed523887c8863b78351da6f00e5d6f7027b6aba9f0ec2605c4ec73c79
name: gensoft-macsyfinder-1.0.5
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: pandora
rpm_sourcerpm: gensoft-macsyfinder-1.0.5-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-macsyfinder-1.0.5-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Detection of macromolecular systems in protein datasets using systems modelling and similarity search.

description:
  Detection of macromolecular systems in protein datasets using systems modelling and similarity search.


pkgId: 5acea2ccf47e417bfa69b64c96c6a081afd2dd039e2240f108a88dd1116f24fc
name: gensoft-mageck-0.5.9.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-mageck-0.5.9.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-mageck-0.5.9.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens (or GeCKO) technology.

description:
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens (or GeCKO) technology.


pkgId: 537665cb5d8700ba7d50864b61150d1ab8178d8e96f9078ef03c36c5b3a7140c
name: gensoft-magicblast-1.5.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 33a5e8f210fe
rpm_sourcerpm: gensoft-magicblast-1.5.0-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-magicblast-1.5.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome.

description:
  a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome.


pkgId: 2eec42b8d74e8fb998362a3fedd9fddf38f6c0102ad1ce91d328cf5aa499c678
name: gensoft-maker-3.01.03
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8d3d25229f0b
rpm_sourcerpm: gensoft-maker-3.01.03-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-maker-3.01.03-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MAKER is a portable and easily configurable genome annotation pipeline. Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases.

description:
  MAKER is a portable and easily configurable genome annotation pipeline. Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases.


pkgId: d4905804dbeacb94489682f61d44195b45e82ff3b007a9f6f7b39bd89f84619e
name: gensoft-manta-1.6.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8c3646742903
rpm_sourcerpm: gensoft-manta-1.6.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-manta-1.6.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels and large insertions within a single efficient workflow

description:
  Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels and large insertions within a single efficient workflow


pkgId: 82b5f38de5684bb483460704952024c71fc1511ae087b511b9e70c4f28e0d2c9
name: gensoft-mapDamage-2.2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e336bad3cf1b
rpm_sourcerpm: gensoft-mapDamage-2.2.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-mapDamage-2.2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.

description:
  tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.


pkgId: 7a6d86eb31b68302e6491d19dd48c5086579e1ac0057763e9aa3eb02153e479b
name: gensoft-maqview-0.2.5
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-maqview-0.2.5-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-maqview-0.2.5-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Maqview is graphical read alignment viewer. It is specifically designed for the Maq alignment file and allows you to see the mismatches, base qualities and mapping qualities. Maqview is nothing fancy as Consed or GAP, but just a simple viewer for you to see what happens in a particular region.

description:
  Maqview is graphical read alignment viewer. It is specifically designed for the Maq alignment file and allows you to see the mismatches, base qualities and mapping qualities. Maqview is nothing fancy as Consed or GAP, but just a simple viewer for you to see what happens in a particular region.


pkgId: e02047541abcc6f85f202ed6948f213980cd41ad05615bbee9488b20877917e2
name: gensoft-masurca-3.4.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c4d1aa11e2b5
rpm_sourcerpm: gensoft-masurca-3.4.0-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-masurca-3.4.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Whole genome assembly software. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454).

description:
  Whole genome assembly software. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454).


pkgId: fbe1c9ca3964fe04005cd5acfe60486c10718298341ccfe8d04814a7587ba134
name: gensoft-mbmdr-4.4.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-mbmdr-4.4.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-mbmdr-4.4.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A software that is able to detect multiple sets of significant gene-gene and/or gene-environment interactions in relation to a trait of interest. The trait can either be expressed on a binary scale, or on a continuous scale.

description:
  A software that is able to detect multiple sets of significant gene-gene and/or gene-environment interactions in relation to a trait of interest. The trait can either be expressed on a binary scale, or on a continuous scale.


pkgId: 7cab710dee0e4fcea578b73d34d714ca2721c7bcca86f670def8d551fbc9068f
name: gensoft-mdmcleaner-0.8.3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-mdmcleaner-0.8.3-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-mdmcleaner-0.8.3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs

description:
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs


pkgId: eb532a3c82e31681188b63bf72238e30e02be40571b181aac56cc3338bd72f2a
name: gensoft-medaka-1.11.3
arch: x86_64
version: 5.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-medaka-1.11.3-5.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-medaka-1.11.3-5.0-1.x86_64.rpm
checksum_type: sha256
summary:
  medaka is a tool to create consensus sequences and variant calls from nanopore sequencing data. This task is performed using neural networks applied a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods whilst being much faster.

description:
  medaka is a tool to create consensus sequences and variant calls from nanopore sequencing data. This task is performed using neural networks applied a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods whilst being much faster.


pkgId: aab14ff2933a1dbcbab5e8cba5b9e77e295851a0dfefe28f8a86f23434a6a267
name: gensoft-medi-0.2.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build2
rpm_sourcerpm: gensoft-medi-0.2.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-medi-0.2.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MEDI nextflow pipelines for recovering food abundances and nutrient composition from metagenomic shotgun sequencing data.

description:
  MEDI nextflow pipelines for recovering food abundances and nutrient composition from metagenomic shotgun sequencing data.


pkgId: 0c66cee7ef21a0903f92842d0a8a2451d873b00c42fefa61c4df440c08ef8b59
name: gensoft-megahit-1.2.9
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 10b1a36cf686
rpm_sourcerpm: gensoft-megahit-1.2.9-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-megahit-1.2.9-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly.

description:
  MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly.


pkgId: 40cfce94d63f84b3b23e35ec8ae1d3959da55b0a7c4d595147e891e802cc4a58
name: gensoft-melting-5.2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d68a97dfa4c6
rpm_sourcerpm: gensoft-melting-5.2.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-melting-5.2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Melting computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions

description:
  Melting computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions


pkgId: 4fc0fb49e38d5860667bb45dd91a5d885e423c0251a174099f7eff3637622d33
name: gensoft-meson-0.53.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-meson-0.53.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-meson-0.53.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Meson is an open source build system meant to be both extremely fast, and, even more importantly, as user friendly as possible.

description:
  Meson is an open source build system meant to be both extremely fast, and, even more importantly, as user friendly as possible.


pkgId: 43e78f29346945d46ed3712fd252f627996b75a2a4d7d2dbdb1a2225dd5c80f1
name: gensoft-metaTOR-1.1.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d96ac1cdd5ac
rpm_sourcerpm: gensoft-metaTOR-1.1.4-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-metaTOR-1.1.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Metagenomic Tridimensional Organisation-based Reassembly - A set of scripts that streamlines the processing and binning of metagenomic metaHiC datasets

description:
  Metagenomic Tridimensional Organisation-based Reassembly - A set of scripts that streamlines the processing and binning of metagenomic metaHiC datasets


pkgId: 7f6f3b023fc5e4b57a38a81621cc05878117246ef96a8c3f89a42cc1dee3ff2a
name: gensoft-metaphlan-2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 556371580e1b
rpm_sourcerpm: gensoft-metaphlan-2.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-metaphlan-2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level.

description:
  MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level.


pkgId: f0be66999b552beb18bdab1c792c1e7fb51b46401dc95b93b5c47dd8e654c3d4
name: gensoft-metis-5.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9ce970a23518
rpm_sourcerpm: gensoft-metis-5.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-metis-5.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices

description:
  METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices


pkgId: f0b4e6d8c9fa8184e78a4d1e1c03eb6642c9d0642a6c1aae38119460d825768d
name: gensoft-mgs-canopy-d55ed1a8b825
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7b35ee92d226
rpm_sourcerpm: gensoft-mgs-canopy-d55ed1a8b825-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-mgs-canopy-d55ed1a8b825-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  mgs-canopy is our variation of canopy clustering focuses on efficient clustering of points in multi-dimensional pearson correlation space

description:
  mgs-canopy is our variation of canopy clustering focuses on efficient clustering of points in multi-dimensional pearson correlation space


pkgId: a2e5fec0c35742c8ae02226c24124684b8b5b4e140bf4fe4d6e34a34058b7d0f
name: gensoft-miRanda-3.3a
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 093c44d1af5f
rpm_sourcerpm: gensoft-miRanda-3.3a-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-miRanda-3.3a-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an miRNA target scanner which aims to predict mRNA targets for microRNAs using dynamic-programming alignment and thermodynamics.

description:
  an miRNA target scanner which aims to predict mRNA targets for microRNAs using dynamic-programming alignment and thermodynamics.


pkgId: 8c3c2f05b10acf6854a164e09a6096cf68d77d5e225f01ed92a59861dbefe59f
name: gensoft-micca-1.7.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2568db9cf4dd
rpm_sourcerpm: gensoft-micca-1.7.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-micca-1.7.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  micca is an open-source, command-line software for the processing of amplicon sequencing data, from raw sequences to OTU tables, taxonomic classification and phylogenetic tree inference. The pipeline can be applied to a range of highly conserved genes/spacers, such as 16S rRNA gene and Internal Transcribed Spacer (ITS).

description:
  micca is an open-source, command-line software for the processing of amplicon sequencing data, from raw sequences to OTU tables, taxonomic classification and phylogenetic tree inference. The pipeline can be applied to a range of highly conserved genes/spacers, such as 16S rRNA gene and Internal Transcribed Spacer (ITS).


pkgId: f51605a2fb466374673c115374d9d82f5477dc02b9f54f7b9903c4b75774c7fe
name: gensoft-microbiomeutil-r20110519
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-microbiomeutil-r20110519-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-microbiomeutil-r20110519-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.

description:
  A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.


pkgId: cf6b4ed7166b4ce57cb697359f7f2676c7062bbef5dcc2237b7a7ff700bfcc77
name: gensoft-micropita-1.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-micropita-1.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-micropita-1.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  microbiomes - Picking Interesting Taxonomic Abundance. is a computational tool enabling sample selection in two-stage (tiered) studies. Using two-stage designs can more efficiently allocate resources, reducing study costs, and maximizing the use of samples.

description:
  microbiomes - Picking Interesting Taxonomic Abundance. is a computational tool enabling sample selection in two-stage (tiered) studies. Using two-stage designs can more efficiently allocate resources, reducing study costs, and maximizing the use of samples.


pkgId: 20d48ffd436b7699d8c9da73f3913de50aa56167319f6c1446c27c20974b2f98
name: gensoft-mikado-2.3.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-mikado-2.3.4-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-mikado-2.3.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data and to select the best models in each locus

description:
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data and to select the best models in each locus


pkgId: a6cec7aad3b102a690ca01a1d033c7dcea104d8b4148efd384a8aeff4c54f7fc
name: gensoft-minced-0.4.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c7f505b202b5
rpm_sourcerpm: gensoft-minced-0.4.2-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-minced-0.4.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a program to find Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) in full genomes or environmental datasets such as metagenomes

description:
  a program to find Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) in full genomes or environmental datasets such as metagenomes


pkgId: 6f506ed4af406d17982da7961d0318d05fd3c0ea2c69b65a7a7a0c8c8b726627
name: gensoft-miniasm-0.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f0e8b7e59d91
rpm_sourcerpm: gensoft-miniasm-0.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-miniasm-0.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format.

description:
  Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format.


pkgId: e66e390b4733f7e6093be9bf6c6861839af9637e31959ce87d794731891488bc
name: gensoft-minimap2-2.17
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-minimap2-2.17-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-minimap2-2.17-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database

description:
  a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database


pkgId: 939584da93ca0bd23f231adb69137af5a3bc65e36dd33d3c89c0eed0242182e5
name: gensoft-mira-4.0.2
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 905e56760126
rpm_sourcerpm: gensoft-mira-4.0.2-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-mira-4.0.2-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio CCS and error corrected data usable, uncorrected not yet

description:
  Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio CCS and error corrected data usable, uncorrected not yet


pkgId: 3c995c23983f2159a68b48ad62e00b8cc86b836e596942e44257a044954224a8
name: gensoft-misopy-0.5.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ad7c00b4e6e6
rpm_sourcerpm: gensoft-misopy-0.5.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-misopy-0.5.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MISO (Mixture-of-Isoforms) is a probabilistic framework that quantitates the expression level of alternatively spliced genes from RNA-Seq data, and identifies differentially regulated isoforms or exons across samples. By modeling the generative process by which reads are produced from isoforms in RNA-Seq, the MISO model uses Bayesian inference to compute the probability that a read originated from a particular isoform.

description:
  MISO (Mixture-of-Isoforms) is a probabilistic framework that quantitates the expression level of alternatively spliced genes from RNA-Seq data, and identifies differentially regulated isoforms or exons across samples. By modeling the generative process by which reads are produced from isoforms in RNA-Seq, the MISO model uses Bayesian inference to compute the probability that a read originated from a particular isoform.


pkgId: 7825ae52b2f7016cd2f4f8cd39bd7b40d85fc7494f013619fe8e2216c02fc166
name: gensoft-mm-common-1.0.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a64996417079
rpm_sourcerpm: gensoft-mm-common-1.0.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-mm-common-1.0.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  mm-common module provides the build infrastructure and utilities shared among the GNOME C++ binding libraries.

description:
  mm-common module provides the build infrastructure and utilities shared among the GNOME C++ binding libraries.


pkgId: b9199b6bd0da23fd7638a55179fd59292a4c3b210d57641563e716e91c915dfd
name: gensoft-modeltest-ng-0.2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5befb01cabde
rpm_sourcerpm: gensoft-modeltest-ng-0.2.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-modeltest-ng-0.2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and protein alignments.

description:
  ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and protein alignments.


pkgId: 7588889a93979ff551c3967909ff92655c4e91666aa1f5e4f8a5ca5bbc04abc9
name: gensoft-mono-6.12.0.122
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2c031c51066e
rpm_sourcerpm: gensoft-mono-6.12.0.122-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-mono-6.12.0.122-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  An open source, cross-platform, implementation of C# and the CLR that is binary compatible with Microsoft.NET.

description:
  An open source, cross-platform, implementation of C# and the CLR that is binary compatible with Microsoft.NET.


pkgId: 0a2de9c4ec1970d1c8db5d5a53914030b5fb2d19cdfb3e5c88e68096aea3aef0
name: gensoft-mothur-1.43.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c633f6893880
rpm_sourcerpm: gensoft-mothur-1.43.0-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-mothur-1.43.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a single resource to analyze molecular data that is used by microbial ecologists. Many of these tools are available elsewhere as individual programs and as scripts, which tend to be slow or as web utilities, which limit your ability to analyze your data. mothur offers the ability to go from raw sequences to the generation of visualization tools to describe alpha and beta diversity

description:
  a single resource to analyze molecular data that is used by microbial ecologists. Many of these tools are available elsewhere as individual programs and as scripts, which tend to be slow or as web utilities, which limit your ability to analyze your data. mothur offers the ability to go from raw sequences to the generation of visualization tools to describe alpha and beta diversity


pkgId: 7c0c822fc54d70b0f30eb7e3ad827ee673050101aa5bc2903c40cecc813af8ba
name: gensoft-mpc-1.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-mpc-1.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-mpc-1.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result.

description:
  Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result.


pkgId: 5d210b57d5000315a820679ca95456f09f82151c555a326b39be6bbd7801bbbd
name: gensoft-mpfr-4.0.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f9263e56cb2f
rpm_sourcerpm: gensoft-mpfr-4.0.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-mpfr-4.0.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MPFR is a portable library written in C for arbitrary precision arithmetic on floating-point numbers.

description:
  MPFR is a portable library written in C for arbitrary precision arithmetic on floating-point numbers.


pkgId: aff2e8a922698368a49375430810c9a4ac78525f06fd8fa7af17c80584952621
name: gensoft-msCentipede-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-msCentipede-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-msCentipede-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an algorithm for accurately inferring transcription factor binding sites using chromatin accessibility data (Dnase-seq, ATAC-seq)  The hierarchical multiscale model underlying msCentipede identifies factor-bound genomic sites by using patterns in DNA cleavage resulting from the action of nucleases in open chromatin regions (regions typically bound by transcription factors). msCentipede, a generalization of the CENTIPEDE model, accounts for heterogeneity in the DNA cleavage patterns around sites bound by transcription factors.

description:
  an algorithm for accurately inferring transcription factor binding sites using chromatin accessibility data (Dnase-seq, ATAC-seq)  The hierarchical multiscale model underlying msCentipede identifies factor-bound genomic sites by using patterns in DNA cleavage resulting from the action of nucleases in open chromatin regions (regions typically bound by transcription factors). msCentipede, a generalization of the CENTIPEDE model, accounts for heterogeneity in the DNA cleavage patterns around sites bound by transcription factors.


pkgId: 056697380c9336e3c86c828163fdc9e2bd70d9173aa32cb0afc0d15520d35a48
name: gensoft-msamtools-1.1.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-msamtools-1.1.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-msamtools-1.1.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  msamtools provides useful functions that are commonly used in microbiome data analysis, especially when analyzing shotgun metagenomics or metatranscriptomics data.

description:
  msamtools provides useful functions that are commonly used in microbiome data analysis, especially when analyzing shotgun metagenomics or metatranscriptomics data.


pkgId: 43fd299269ac2f29a4d0c0d7f4af17dbc04301bab8e38ca526635d8576ca7bce
name: gensoft-msaprobs-1.0.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 776e1351f28b
rpm_sourcerpm: gensoft-msaprobs-1.0.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-msaprobs-1.0.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MSAPROBS is a new and practial protein multiple sequence alignment algorithm based on pair hidden markov model and partition function posterrior probabilities.

description:
  MSAPROBS is a new and practial protein multiple sequence alignment algorithm based on pair hidden markov model and partition function posterrior probabilities.


pkgId: bad5b393adfa1ca1689cdd380725d52e1ab5ed73a58a4ae1e941cf37a9201ed9
name: gensoft-msmc2-2.1.3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5befb01cabde
rpm_sourcerpm: gensoft-msmc2-2.1.3-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-msmc2-2.1.3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  This program implements MSMC2, a method to infer population size history and population separation history from whole genome sequencing data.

description:
  This program implements MSMC2, a method to infer population size history and population separation history from whole genome sequencing data.


pkgId: e5ce7be66138e42927b13be5beeda18d72eb11905f03b722c2e8743f9a0894ca
name: gensoft-mtdev-1.1.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-mtdev-1.1.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-mtdev-1.1.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The mtdev is a stand-alone library which transforms all variants of kernel MT events to the slotted type B protocol. The events put into mtdev may be from any MT device, specifically type A without contact tracking, type A with contact tracking, or type B with contact tracking.

description:
  The mtdev is a stand-alone library which transforms all variants of kernel MT events to the slotted type B protocol. The events put into mtdev may be from any MT device, specifically type A without contact tracking, type A with contact tracking, or type B with contact tracking.


pkgId: 207f1b271e5a1f231a7c8e2d790be1945cb2c853c503cf13e9db7b7b62064b65
name: gensoft-muTect-1.1.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c8e942c6e6d5
rpm_sourcerpm: gensoft-muTect-1.1.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-muTect-1.1.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a method developed at the Broad Institute for the reliable and accurate identification of somatic point mutations in next generation sequencing data of cancer genomes

description:
  a method developed at the Broad Institute for the reliable and accurate identification of somatic point mutations in next generation sequencing data of cancer genomes


pkgId: 46e0ee38843b5ee1ffe7ef9751efa59d63d2384008dfabdc59e6cb8481edf368
name: gensoft-musket-1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8f36e80082fd
rpm_sourcerpm: gensoft-musket-1.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-musket-1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an efficient multistage k-mer based corrector for Illumina short read data. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow.

description:
  an efficient multistage k-mer based corrector for Illumina short read data. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow.


pkgId: 403aac5c4862116f12f8cf814dfb87c210b81e9740637285bf4650559b8a7894
name: gensoft-mview-1.67
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a1706b8aa71a
rpm_sourcerpm: gensoft-mview-1.67-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-mview-1.67-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Reformats the results of a sequence database search (BLAST, FASTA, etc) or a multiple alignment (MSF, PIR, CLUSTAL, etc) adding optional HTML markup to control colouring and web page layout

description:
  Reformats the results of a sequence database search (BLAST, FASTA, etc) or a multiple alignment (MSF, PIR, CLUSTAL, etc) adding optional HTML markup to control colouring and web page layout


pkgId: cd72719e599e8ddc997a2ead435bfe71365184ff9635cd3c67a65a8e4a569a5d
name: gensoft-mykrobe-0.13.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-mykrobe-0.13.0-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-mykrobe-0.13.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.

description:
  Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.


pkgId: dc69fc758e8865b84c0c1f9762354244f6da3fbd0ee32364f4df6cba407ffc5c
name: gensoft-nanopolish-0.12.0
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8c1449d6a755
rpm_sourcerpm: gensoft-nanopolish-0.12.0-4.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-nanopolish-0.12.0-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more (see Nanopolish modules, below).

description:
  Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more (see Nanopolish modules, below).


pkgId: b4bf157ec1ea79336b1d7d804a060f4e881bc63eb2bdb83d81b301ef65a8abaa
name: gensoft-nanosv-1.2.4
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3b4cbd857408
rpm_sourcerpm: gensoft-nanosv-1.2.4-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-nanosv-1.2.4-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers.

description:
  NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers.


pkgId: 1bf1b8a1da19900a0bae676652b22005152865e37c6c0e40424c8d7b09811464
name: gensoft-nauty-27r3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f339d5960c0b
rpm_sourcerpm: gensoft-nauty-27r3-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-nauty-27r3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  nauty and Traces are programs for computing automorphism groups of graphs and digraphs. They can also produce a canonical labelling

description:
  nauty and Traces are programs for computing automorphism groups of graphs and digraphs. They can also produce a canonical labelling


pkgId: 704b9130c18493f0ea6fabdd27814ab9f9598259e893d86a79be7be6325ce2f7
name: gensoft-ncbi-vdb-2.10.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 4c1845721240
rpm_sourcerpm: gensoft-ncbi-vdb-2.10.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ncbi-vdb-2.10.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

description:
  The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.


pkgId: 0b2ba38bdc0f5c358aa30632e23bddcbe8160a3a57ba98494b78b257548abfd3
name: gensoft-ncbitools-20170106
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-ncbitools-20170106-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ncbitools-20170106-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The ToolBox model and code is used extensively within NCBI for the internal pipelines and tools such as GenBank, Entrez, BLAST, Sequin, OMIM, RefSeq, and others

description:
  The ToolBox model and code is used extensively within NCBI for the internal pipelines and tools such as GenBank, Entrez, BLAST, Sequin, OMIM, RefSeq, and others


pkgId: aa67d539d0bbef67ec519d95f944bfe1831e4d2f53330d10cbeab9575ec89137
name: gensoft-ncoils-2.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: da3bf32ffa8d
rpm_sourcerpm: gensoft-ncoils-2.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ncoils-2.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score

description:
  a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score


pkgId: 621abf963343f4fb8bed9f10fd7f421f7952a443b3f453c3de3c699176adfb8c
name: gensoft-nest-simulator-2.20.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 78aa77608015
rpm_sourcerpm: gensoft-nest-simulator-2.20.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-nest-simulator-2.20.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  NEST is a simulator for spiking neural network models that focuses on the dynamics, size and structure of neural systems rather than on the exact morphology of individual neurons

description:
  NEST is a simulator for spiking neural network models that focuses on the dynamics, size and structure of neural systems rather than on the exact morphology of individual neurons


pkgId: d9e8488a6603645f5727aa48c34403cfeeb95273de6542f79670371e64962c5e
name: gensoft-netcdf-4.7.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-netcdf-4.7.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-netcdf-4.7.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

description:
  NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.


pkgId: dd0d8ae7a963023bc4a67e4813c564bcd3508f016b1cc33c44e9e1e1c48347f8
name: gensoft-netpbm-10.73.35
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 05b073988846
rpm_sourcerpm: gensoft-netpbm-10.73.35-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-netpbm-10.73.35-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Netpbm is a toolkit for manipulation of graphic images, including conversion of images between a variety of different formats. There are over 300 separate tools in the package including converters for about 100 graphics formats.

description:
  Netpbm is a toolkit for manipulation of graphic images, including conversion of images between a variety of different formats. There are over 300 separate tools in the package including converters for about 100 graphics formats.


pkgId: 8fcb5279e3e6621cf29ed2f94a0639c59540653af2510aebf03ba0fcf102a88b
name: gensoft-nettle-3.5.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-nettle-3.5.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-nettle-3.5.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Nettle is a cryptographic library that is designed to fit easily in more or less any context. In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.

description:
  Nettle is a cryptographic library that is designed to fit easily in more or less any context. In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.


pkgId: 4c6aa5bd5333f39f39310252a91a6f480d755288431dc9fd4deacefaef90079d
name: gensoft-newick-utils-1.6
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 80c673491042
rpm_sourcerpm: gensoft-newick-utils-1.6-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-newick-utils-1.6-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees. Functions include re-rooting, extracting subtrees, trimming, pruning, condensing, drawing (ASCII graphics or SVG).

description:
  The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees. Functions include re-rooting, extracting subtrees, trimming, pruning, condensing, drawing (ASCII graphics or SVG).


pkgId: 50e87ebb7fc4c51d9b406467b365dde7c93403f313b73c38059e52fd7829b9e6
name: gensoft-nextflow-20.01.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: eb1e1feaf921
rpm_sourcerpm: gensoft-nextflow-20.01.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-nextflow-20.01.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages.

description:
  Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages.


pkgId: 12939a3f8a29c6a2c6cc97f8900833ef94150611d7918d5c5ca87423ce48dc8a
name: gensoft-nextflow-23.10.3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-nextflow-23.10.3-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-nextflow-23.10.3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a workflow system for creating scalable, portable, and reproducible workflows based on dataflow programming model

description:
  a workflow system for creating scalable, portable, and reproducible workflows based on dataflow programming model


pkgId: 67a0cb0cdb2db81c72d3ec089f18c9fcafe64220465ab2b3b1e400ca8fd31fcf
name: gensoft-ngmlr-0.2.7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 837d7cbc7a49
rpm_sourcerpm: gensoft-ngmlr-0.2.7-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ngmlr-0.2.7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to correctly align reads spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and a banded Smith-Waterman alignment algorithm with a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments. The gap model allows ngmlr to account for both the sequencing error and real genomic variations at the same time and makes it especially effective at more precisely identifying the position of breakpoints stemming from structural variations. The k-mer search helps to detect and split reads that cannot be aligned linearly, enabling ngmlr to reliably align reads to a wide range of different structural variations including nested SVs (e.g. inversions flanked by deletions).

description:
  CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to correctly align reads spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and a banded Smith-Waterman alignment algorithm with a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments. The gap model allows ngmlr to account for both the sequencing error and real genomic variations at the same time and makes it especially effective at more precisely identifying the position of breakpoints stemming from structural variations. The k-mer search helps to detect and split reads that cannot be aligned linearly, enabling ngmlr to reliably align reads to a wide range of different structural variations including nested SVs (e.g. inversions flanked by deletions).


pkgId: 63074f3152332aeead26b65597230565e99391bab7c40e7ee2c2324c35f37550
name: gensoft-ngs-2.10.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 61de9d1d5750
rpm_sourcerpm: gensoft-ngs-2.10.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ngs-2.10.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end engines

description:
  NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end engines


pkgId: acec8f483de947227105d7e2d2b650ef14fcac440aa26386070bc208dc835cf0
name: gensoft-ngsplot-2.63
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 38e48c7a841f
rpm_sourcerpm: gensoft-ngsplot-2.63-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ngsplot-2.63-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a program that allows you to easily visualize your next-generation sequencing (NGS) samples at functional genomic regions.

description:
  a program that allows you to easily visualize your next-generation sequencing (NGS) samples at functional genomic regions.


pkgId: a207509ec533888dc7be3e6e0ce57b86d131749f86d863fcf65edd30cf7cd943
name: gensoft-nhPhyml-NA
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7d0caba3d8d7
rpm_sourcerpm: gensoft-nhPhyml-NA-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-nhPhyml-NA-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a program built to compute phylogenetic trees under the non stationary, non homogeneous model of Galtier and Gouy (1998).

description:
  a program built to compute phylogenetic trees under the non stationary, non homogeneous model of Galtier and Gouy (1998).


pkgId: b0b6f1432e20f3d20b72a744fa3c2f9b6073b016a94c6282c995c3819213f8ae
name: gensoft-nh_PhyloBayes-0.2.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 548d729bf0ef
rpm_sourcerpm: gensoft-nh_PhyloBayes-0.2.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-nh_PhyloBayes-0.2.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Models for phylogenetic reconstruction. The phylogenetic models BP (Blanquart and Lartillot 2006) and CAT+BP (Blanquart and Lartillot 2008) implement non-stationary and non-homogeneous stochastic processes for both amino-acid and nucleotide substitutions. Both the models allow to fit global compositional variations along the phylogenetic tree branches, and CAT+BP moreover implements the CAT model component (Lartillot and Philippe 2004) estimating a mixture of site specific substitution processes. Those models are implemented into the NH_PhyloBayes package for phylogenetic reconstruction.

description:
  Models for phylogenetic reconstruction. The phylogenetic models BP (Blanquart and Lartillot 2006) and CAT+BP (Blanquart and Lartillot 2008) implement non-stationary and non-homogeneous stochastic processes for both amino-acid and nucleotide substitutions. Both the models allow to fit global compositional variations along the phylogenetic tree branches, and CAT+BP moreover implements the CAT model component (Lartillot and Philippe 2004) estimating a mixture of site specific substitution processes. Those models are implemented into the NH_PhyloBayes package for phylogenetic reconstruction.


pkgId: 15c9aa978742507c8086aed8c60032143025c9623bd4f941b3fffd9c68ca75f8
name: gensoft-nim-1.0.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 69212bef6c6b
rpm_sourcerpm: gensoft-nim-1.0.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-nim-1.0.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Nim is a systems and applications programming language. Statically typed and compiled, it provides unparalleled performance in an elegant package.

description:
  Nim is a systems and applications programming language. Statically typed and compiled, it provides unparalleled performance in an elegant package.


pkgId: 539f8e410a495cec6670ee5e30a755d9d3a56076e21bbb9d9e4e7f35bdc7a611
name: gensoft-ninja-1.10.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-ninja-1.10.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ninja-1.10.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Ninja is yet another build system. It takes as input the interdependencies of files (typically source code and output executables) and orchestrates building them, quickly.

description:
  Ninja is yet another build system. It takes as input the interdependencies of files (typically source code and output executables) and orchestrates building them, quickly.


pkgId: 37a9abff3eee0386457485d3fd6ba6a475dd77e9530edfa509079699bdc124aa
name: gensoft-nlopt-2.6.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e23570257197
rpm_sourcerpm: gensoft-nlopt-2.6.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-nlopt-2.6.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.

description:
  NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.


pkgId: 945375d30c7096d1a2b3e5102743f72849c9ccd63d32c5780fc61dcc75db9751
name: gensoft-ntl-11.4.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-ntl-11.4.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ntl-11.4.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  NTL is a high-performance, portable C++ library providing data structures and algorithms for manipulating signed, arbitrary length integers, and for vectors, matrices, and polynomials over the integers and over finite fields.

description:
  NTL is a high-performance, portable C++ library providing data structures and algorithms for manipulating signed, arbitrary length integers, and for vectors, matrices, and polynomials over the integers and over finite fields.


pkgId: 306adc0febe7c759e85e8adc34dbf7535cc997a1b1137bf91d26eabcf7818972
name: gensoft-numactl-2.0.19
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-numactl-2.0.19-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-numactl-2.0.19-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Simple NUMA policy support. It consists of a numactl program to run other programs with a specific NUMA policy and a libnuma shared library (NUMA API) to set NUMA policy in applications

description:
  Simple NUMA policy support. It consists of a numactl program to run other programs with a specific NUMA policy and a libnuma shared library (NUMA API) to set NUMA policy in applications


pkgId: 4c26e12a2f44453d87280d835076f977433538f235ba39ea15b6dd7879b2cad2
name: gensoft-oases-0.2.09
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 003e021f9bd1
rpm_sourcerpm: gensoft-oases-0.2.09-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-oases-0.2.09-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  De novo transcriptome assembler for very short reads. Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly.

description:
  De novo transcriptome assembler for very short reads. Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly.


pkgId: adf449d4caba097d22bd9981cdca34951d84070f300be0484e318c7fdf207c0e
name: gensoft-octave-5.2.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-octave-5.2.0-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-octave-5.2.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  high-level interpreted language, primarily intended for numerical computations. It provides capabilities for the numerical solution of linear and nonlinear problems, and for performing other numerical experiments. It also provides extensive graphics capabilities for data visualization and manipulation. Octave is normally used through its interactive command line interface, but it can also be used to write non-interactive programs. The Octave language is quite similar to Matlab so that most programs are easily portable.

description:
  high-level interpreted language, primarily intended for numerical computations. It provides capabilities for the numerical solution of linear and nonlinear problems, and for performing other numerical experiments. It also provides extensive graphics capabilities for data visualization and manipulation. Octave is normally used through its interactive command line interface, but it can also be used to write non-interactive programs. The Octave language is quite similar to Matlab so that most programs are easily portable.


pkgId: 72e32041615b517c7bd65e72390ac240356263f1b5b4f4ee676ab4ab41e3a9a5
name: gensoft-ohana-0.1.7666.41124
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a996451f047c
rpm_sourcerpm: gensoft-ohana-0.1.7666.41124-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-ohana-0.1.7666.41124-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a suite of software for analyzing population structure and admixture history using unsupervised learning methods.

description:
  a suite of software for analyzing population structure and admixture history using unsupervised learning methods.


pkgId: 71d627dba95e57677ce4e2178b9ac512fdb8a9190a43eece28be65de3d23fabf
name: gensoft-omegaMap-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b3e5c03d6088
rpm_sourcerpm: gensoft-omegaMap-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-omegaMap-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a program for detecting natural selection and recombination in DNA or RNA sequences. It is based on a model of population genetics and molecular evolution. The signature of natural selection is detected using the dN/dS ratio (which measures the relative excess of non-synonymous to synonymous polymorphism) and the signature of recombination is detected from the patterns of linkage disequilibrium.

description:
  a program for detecting natural selection and recombination in DNA or RNA sequences. It is based on a model of population genetics and molecular evolution. The signature of natural selection is detected using the dN/dS ratio (which measures the relative excess of non-synonymous to synonymous polymorphism) and the signature of recombination is detected from the patterns of linkage disequilibrium.


pkgId: b196a74cbeb6e1a76701bbfb7b5b785f7ead584532669f94cd6cf39d5f52ea1f
name: gensoft-oncotator-1.9.9.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 112d37b680d2
rpm_sourcerpm: gensoft-oncotator-1.9.9.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-oncotator-1.9.9.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Oncotator is a tool for annotating human genomic point mutations and indels with data relevant to cancer researchers.

description:
  Oncotator is a tool for annotating human genomic point mutations and indels with data relevant to cancer researchers.


pkgId: 7b75071b091b604aceee0d75e260c9cc7fcbce89ee64387448700fec913c87aa
name: gensoft-openbabel-2.4.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-openbabel-2.4.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-openbabel-2.4.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Open Babel is a chemical toolbox designed to speak the many languages of chemical data. Its an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.

description:
  Open Babel is a chemical toolbox designed to speak the many languages of chemical data. Its an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.


pkgId: cbbe2759cba41cf9fd964e99281662ab1b871ec651c7a74b32154a3dea752ed2
name: gensoft-openslide-3.4.1
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 1c75061502ea
rpm_sourcerpm: gensoft-openslide-3.4.1-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-openslide-3.4.1-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  OpenSlide is a C library that provides a simple interface to read whole-slide images (also known as virtual slides).

description:
  OpenSlide is a C library that provides a simple interface to read whole-slide images (also known as virtual slides).


pkgId: 93977df9f21f7744aedd929f902f8389089da2b02ad573beca9eed416107131b
name: gensoft-orfm-0.7.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 60a0e08f1587
rpm_sourcerpm: gensoft-orfm-0.7.1-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-orfm-0.7.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A simple and not slow open reading frame (ORF) caller. No bells or whistles like frameshift detection, just a straightforward goal of returning a FASTA file of open reading frames over a certain length from a FASTA/Q file of nucleotide sequences.

description:
  A simple and not slow open reading frame (ORF) caller. No bells or whistles like frameshift detection, just a straightforward goal of returning a FASTA file of open reading frames over a certain length from a FASTA/Q file of nucleotide sequences.


pkgId: 34954add7ebcd9a98fd25d111cb2bf4787fef06d0aa0e027ec4d51b2e0f18ff0
name: gensoft-pal2nal-14.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c893fc4c2654
rpm_sourcerpm: gensoft-pal2nal-14.1-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-pal2nal-14.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  converts a multiple sequence alignment of proteins and the corresponding DNA (or mRNA) sequences into a codon alignment

description:
  converts a multiple sequence alignment of proteins and the corresponding DNA (or mRNA) sequences into a codon alignment


pkgId: bef8674d818ee348d964bd63b3c5566c19d5c89ee66805e1e1b6d7f0d7eca7ab
name: gensoft-paml-4.9j
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9d08322ab983
rpm_sourcerpm: gensoft-paml-4.9j-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-paml-4.9j-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood

description:
  A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood


pkgId: 173a611d4455e6fc4730e3e76836c26093d05403c6d955d9eb90ffa9d69230e5
name: gensoft-panicmage-1.3.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7eb9c65146ff
rpm_sourcerpm: gensoft-panicmage-1.3.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-panicmage-1.3.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Panicmage is a shortcut for pangenome analyzer for infinitely - which means considerably - many genes. panicmage estimates the parameters of the infinitely many genes model for given datasets and performs statistical tests on neutral genome evolution and sampling bias.

description:
  Panicmage is a shortcut for pangenome analyzer for infinitely - which means considerably - many genes. panicmage estimates the parameters of the infinitely many genes model for given datasets and performs statistical tests on neutral genome evolution and sampling bias.


pkgId: eaa414bfcb02326f41c3ca471cd66a1aa2cf4923d36b896fec180e6d453cbdff
name: gensoft-paradiseo-3.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 70550c2a0eac
rpm_sourcerpm: gensoft-paradiseo-3.0.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-paradiseo-3.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  An evolutionary computation framework to (automatically) build fast parallel stochastic optimization solvers

description:
  An evolutionary computation framework to (automatically) build fast parallel stochastic optimization solvers


pkgId: da2bb9080882e047f41e2d4183cb5d0b5907e9f66560b5e927f239d5fb1b9e0d
name: gensoft-parasail-2.4.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3a3a637232c3
rpm_sourcerpm: gensoft-parasail-2.4.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-parasail-2.4.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Pairwise Sequence Alignment Library. parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and various semi-global pairwise sequence alignment algorithms.

description:
  Pairwise Sequence Alignment Library. parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and various semi-global pairwise sequence alignment algorithms.


pkgId: 774ba132a9e3b73133e755462ca0b1aec5be914d5b58127eee1a3bcfee58e132
name: gensoft-pari-2.9.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 1b1474ebadfd
rpm_sourcerpm: gensoft-pari-2.9.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pari-2.9.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PARI/GP is a widely used computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...), but also contains a large number of other useful functions to compute with mathematical entities such as matrices, polynomials, power series, algebraic numbers etc., and a lot of transcendental functions. PARI is also available as a C library to allow for faster computations.

description:
  PARI/GP is a widely used computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...), but also contains a large number of other useful functions to compute with mathematical entities such as matrices, polynomials, power series, algebraic numbers etc., and a lot of transcendental functions. PARI is also available as a C library to allow for faster computations.


pkgId: 56ebc0b8dfb73d70289994f80e1be3f092f91663af50b82f9c7a6876b976a9ff
name: gensoft-parsnp-1.2.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-parsnp-1.2.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-parsnp-1.2.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments.

description:
  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments.


pkgId: 803d8ba6248b6fae3192a236267adb07176e5876a76c98b8a0728c4a2c16b36c
name: gensoft-pastml-1.9.34
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-pastml-1.9.34-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pastml-1.9.34-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  provides fast methods for Ancestral Character Reconstruction (ACR) and visualisation on rooted phylogenetic trees. Given a rooted tree and its node annotations, it can either visualise them as-is, or infer ancestral node states based on the tip states, with a selection of maximum likelihood and parsimonious methods.  The result is then visualised as a zoomable html map.

description:
  provides fast methods for Ancestral Character Reconstruction (ACR) and visualisation on rooted phylogenetic trees. Given a rooted tree and its node annotations, it can either visualise them as-is, or infer ancestral node states based on the tip states, with a selection of maximum likelihood and parsimonious methods.  The result is then visualised as a zoomable html map.


pkgId: d251653d4494d9205d19ebe3d1d765d65445c88d07f63ffe0d9e4cb8b2de40b6
name: gensoft-pbbam-1.0.7
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c28a3d6dbeb3
rpm_sourcerpm: gensoft-pbbam-1.0.7-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-pbbam-1.0.7-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities. This library is not intended to be used as a general-purpose BAM utility - all input & output BAMs must adhere to the PacBio BAM format specification. Non-PacBio BAMs will cause exceptions to be thrown.

description:
  The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities. This library is not intended to be used as a general-purpose BAM utility - all input & output BAMs must adhere to the PacBio BAM format specification. Non-PacBio BAMs will cause exceptions to be thrown.


pkgId: 0e839fc86e6b193cc223a3cb49b578b5e9f27ebf96fab2c93278548e3abdc30c
name: gensoft-pbccs-6.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 223d0e9c227e
rpm_sourcerpm: gensoft-pbccs-6.0.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pbccs-6.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ccs combines multiple subreads of the same SMRTbell molecule using a statistical model to produce one highly accurate consensus sequence, also called a HiFi read, along with base quality values. This tool powers the Circular Consensus Sequencing workflow in SMRT Link.

description:
  ccs combines multiple subreads of the same SMRTbell molecule using a statistical model to produce one highly accurate consensus sequence, also called a HiFi read, along with base quality values. This tool powers the Circular Consensus Sequencing workflow in SMRT Link.


pkgId: 349d8888abf9131e44cd6e7f5aa7b87d779bbfa031dff772661f321f48b21392
name: gensoft-pbcopper-1.6.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 901d6104a0db
rpm_sourcerpm: gensoft-pbcopper-1.6.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pbcopper-1.6.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The pbcopper library provides a suite of data structures, algorithms, and utilities for PacBio C++ applications

description:
  The pbcopper library provides a suite of data structures, algorithms, and utilities for PacBio C++ applications


pkgId: fdda7dfa7ecbcf015c0384523d5b0aa039e5e93dcc81826ef4bd9617d41fa8cf
name: gensoft-pbh5tools-2.3.0p4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-pbh5tools-2.3.0p4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pbh5tools-2.3.0p4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  pbh5tools is a collection of tools that can manipulate the content or extract data from h5 files, that contain alignment information (cmp.h5) and files that contain base-call information (bas.h5 and pls.h5)

description:
  pbh5tools is a collection of tools that can manipulate the content or extract data from h5 files, that contain alignment information (cmp.h5) and files that contain base-call information (bas.h5 and pls.h5)


pkgId: 3961f1a536975285d647f30f55c8705324d78a02b9639f72212f765568e01087
name: gensoft-pbipa-1.8.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-pbipa-1.8.0-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pbipa-1.8.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBio HiFi reads to produce high-quality phased genome assemblies. IPA is an end-to-end solution, starting with input reads and resulting in a polished assembly. IPA is fast, providing an easy to use local run mode or a distributed pipeline for a cluster.

description:
  Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBio HiFi reads to produce high-quality phased genome assemblies. IPA is an end-to-end solution, starting with input reads and resulting in a polished assembly. IPA is fast, providing an easy to use local run mode or a distributed pipeline for a cluster.


pkgId: df2135c75dc48c656f907a3d3c7eb658b62908a479b88ec6358b6d655d8fe4e7
name: gensoft-pbwt-3.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-pbwt-3.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pbwt-3.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  pbwt package provides a core implementation and development environment for PBWT (Positional Burrows-Wheeler Transform) methods for storing and computing on genome variation data sets.

description:
  pbwt package provides a core implementation and development environment for PBWT (Positional Burrows-Wheeler Transform) methods for storing and computing on genome variation data sets.


pkgId: d0d2dbd79b8c2a11281e4b5157fdab6cf61146abd61902faab7f20440a21f405
name: gensoft-pbzip2-1.1.13
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-pbzip2-1.1.13-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pbzip2-1.1.13-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PBZIP2 is a parallel implementation of the bzip2 block-sorting file compressor that uses pthreads and achieves near-linear speedup on SMP machines. The output of this version is fully compatible with bzip2 v1.0.2 or newer.

description:
  PBZIP2 is a parallel implementation of the bzip2 block-sorting file compressor that uses pthreads and achieves near-linear speedup on SMP machines. The output of this version is fully compatible with bzip2 v1.0.2 or newer.


pkgId: 0e95292a7bc31f7d71856c950e301974516775b234546ef64801cdb60ee82650
name: gensoft-pcma-2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-pcma-2.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pcma-2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Profile Consistency Multiple sequence Alignment) is a progressive multiple sequence alignment program that combines two different alignment strategies

description:
  Profile Consistency Multiple sequence Alignment) is a progressive multiple sequence alignment program that combines two different alignment strategies


pkgId: 688a93aaa4c323953de361f4978598a9d4f1b0f937a9f6a6abd8eaeb8bbf8b4d
name: gensoft-pcre-8.43
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-pcre-8.43-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pcre-8.43-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.

description:
  The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.


pkgId: 5b5f483478683d54a5e22fc0d453fca2284bcd844f01c1a9c30254885586e984
name: gensoft-pear-0.9.10
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-pear-0.9.10-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pear-0.9.10-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Paired-End reAd mergeR. PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory

description:
  Paired-End reAd mergeR. PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory


pkgId: 339aee1d2228d490d7899e083e46515487296aa788750005ed6093a8668e10ad
name: gensoft-penncnv-2009.08.27
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c4d1aa11e2b5
rpm_sourcerpm: gensoft-penncnv-2009.08.27-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-penncnv-2009.08.27-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CNV detection from Illumina whole-genome SNP genotyping arrays. It has been extended to handle candidate gene SNP arrays, to handle recent high-density arrays with non-polymorphic markers (so-called CN markers), and to handle Affymetrix genome-wide arrays

description:
  CNV detection from Illumina whole-genome SNP genotyping arrays. It has been extended to handle candidate gene SNP arrays, to handle recent high-density arrays with non-polymorphic markers (so-called CN markers), and to handle Affymetrix genome-wide arrays


pkgId: 6aa61f984e728a1e4d6d0def5ab50894912c18bb60bf03fa38016e654bcf8cb0
name: gensoft-pftool-1.12-beta
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9d6d4d331a9f
rpm_sourcerpm: gensoft-pftool-1.12-beta-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-pftool-1.12-beta-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PFTool (Parallel File Tool) can stat, copy, and compare files in parallel.  Its optimized for an HPC workload and uses MPI for message passing.

description:
  PFTool (Parallel File Tool) can stat, copy, and compare files in parallel.  Its optimized for an HPC workload and uses MPI for message passing.


pkgId: 09c1a058382b4f04b58ad09f93263a519cda7ed3000b05d2be99c41fb4c00352
name: gensoft-pggb-0.2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-pggb-0.2.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pggb-0.2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  pangenome graph construction pipeline that renders a collection of sequences into a pangenome graph (in the variation graph model).

description:
  pangenome graph construction pipeline that renders a collection of sequences into a pangenome graph (in the variation graph model).


pkgId: e8c68416a54f18f9535a05cfb4a83f87a6638611b8e526ecb3db8724ae8569e8
name: gensoft-phammseqs-1.0.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-phammseqs-1.0.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-phammseqs-1.0.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The PhaMMseqs package facilitates pham assembly using MMseqs2. Default parameters have been carefully tuned for rapid, accurate exploration of the bacteriophage protein sequence space.

description:
  The PhaMMseqs package facilitates pham assembly using MMseqs2. Default parameters have been carefully tuned for rapid, accurate exploration of the bacteriophage protein sequence space.


pkgId: db6d4e0131632eba8ebfcea825a2ce700e5fe84b9f46d73f99febe14b490e92b
name: gensoft-phigaro-2.2.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3303576154f9
rpm_sourcerpm: gensoft-phigaro-2.2.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-phigaro-2.2.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Phigaro is a scalable command-line tool for predictions phages and prophages from nucleid acid sequences (including metagenomes) and is based on phage genes HMMs and a smoothing window algorithm.

description:
  Phigaro is a scalable command-line tool for predictions phages and prophages from nucleid acid sequences (including metagenomes) and is based on phage genes HMMs and a smoothing window algorithm.


pkgId: db8816e0d7445281cfb60d7ecdd74ee48d7bd0fbc37e83ccf54752f3fae70182
name: gensoft-phold-0.1.4
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-phold-0.1.4-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-phold-0.1.4-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a sensitive annotation tool for bacteriophage genomes and metagenomes using protein structural homology.

description:
  a sensitive annotation tool for bacteriophage genomes and metagenomes using protein structural homology.


pkgId: 3241a225a002a75dde955b78ba31d4521f9021d60b5c543f44eb93b02172776f
name: gensoft-phred-071220.b
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f70fdea547a4
rpm_sourcerpm: gensoft-phred-071220.b-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-phred-071220.b-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The phred software reads DNA sequencing trace files, calls bases, and assigns a quality value to each called base

description:
  The phred software reads DNA sequencing trace files, calls bases, and assigns a quality value to each called base


pkgId: eba0762a2caecb96f33bc44009cfc552c05cc0b419b1939d6628cd0390dbac38
name: gensoft-phyloFlash-3.4
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: pf
rpm_sourcerpm: gensoft-phyloFlash-3.4-4.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-phyloFlash-3.4-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.

description:
  A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.


pkgId: c001fd81e58d48c672a16c9b537a053c9d83fcc86d486679883deac666266faa
name: gensoft-phylobayes-4.1c
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-phylobayes-4.1c-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-phylobayes-4.1c-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic reconstruction using protein alignments

description:
  A Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic reconstruction using protein alignments


pkgId: 8d1b84a21540e8d136e38bc816296e90a6871d0a7ada8a7dc08dfc7b99fd0287
name: gensoft-phylodeep-0.9
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-phylodeep-0.9-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-phylodeep-0.9-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

description:
  python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.


pkgId: 0541451cd991fac3ab705ad37f07d6e9c04757300cfdcf567c5760442d9ad248
name: gensoft-phylophlan-3.0.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-phylophlan-3.0.2-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-phylophlan-3.0.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

description:
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data


pkgId: 9c4dbe21ba3be9cbe55f0518902b164db4af637aeb1f44b5e21f9ea62dcef823
name: gensoft-phyml-sms-1.8.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: eabd7f786a90
rpm_sourcerpm: gensoft-phyml-sms-1.8.1-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-phyml-sms-1.8.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SMS determines the evolutionary model which best fits the input data in order to infer a phylogenetic tree. It evaluates the models according to a criterion to select the best model. This criterion  can  be  the  AIC   (Aikake  Information  Criterion  )  or the  BIC   (Bayesian  Information Criterion).

description:
  SMS determines the evolutionary model which best fits the input data in order to infer a phylogenetic tree. It evaluates the models according to a criterion to select the best model. This criterion  can  be  the  AIC   (Aikake  Information  Criterion  )  or the  BIC   (Bayesian  Information Criterion).


pkgId: e1bec0990e4d3152b78084805c88d3a837c2fa5c8eedb3960f8badc0dc5fbcdb
name: gensoft-picrust2-2.5.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-picrust2-2.5.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-picrust2-2.5.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a software for predicting functional abundances based only on marker gene sequences.

description:
  PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a software for predicting functional abundances based only on marker gene sequences.


pkgId: cf69273913920e4afc3abd949f240434f2c57030e42d191c2b436f9b875af914
name: gensoft-piggy-1.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 1dc2720ebac6
rpm_sourcerpm: gensoft-piggy-1.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-piggy-1.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Piggy is a tool for analysing the intergenic component of bacterial genomes. It is designed to be used in conjunction with Roary

description:
  Piggy is a tool for analysing the intergenic component of bacterial genomes. It is designed to be used in conjunction with Roary


pkgId: 5e69c73949c509476be06d0dddcf842283b0965a2fa8948e6b7776dfe3bf06f7
name: gensoft-pigz-2.4
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-pigz-2.4-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pigz-2.4-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  pigz, which stands for Parallel Implementation of GZip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data.

description:
  pigz, which stands for Parallel Implementation of GZip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data.


pkgId: a1706ded937777f67d34969eb5030d36cbb3f5deae6294f5a9943d5ab1a396e3
name: gensoft-pilon-1.23
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d0287409c65f
rpm_sourcerpm: gensoft-pilon-1.23-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pilon-1.23-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Pilon is a software tool which can be used to automatically improve draft assemblies, find variation among strains, including large event detection

description:
  Pilon is a software tool which can be used to automatically improve draft assemblies, find variation among strains, including large event detection


pkgId: 8856aadd9967e19294ac5e0d808cfe9c40be38c959862b6ad943a6f83fa942c0
name: gensoft-pima-1.40
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a2829e1ed8e8
rpm_sourcerpm: gensoft-pima-1.40-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pima-1.40-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Pattern-Induced Multi-sequence Alignment program. Performs a multi-sequence alignment of a set of (presumably related) sequences using an extension of our covering pattern construction algorithm

description:
  Pattern-Induced Multi-sequence Alignment program. Performs a multi-sequence alignment of a set of (presumably related) sequences using an extension of our covering pattern construction algorithm


pkgId: de15249afa07534f6594fbf966eac2f753a924f381fd27cf8da508893ed7a184
name: gensoft-pindel-0.2.5b8
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: fc54368a649d
rpm_sourcerpm: gensoft-pindel-0.2.5b8-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-pindel-0.2.5b8-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

description:
  Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.


pkgId: 61755e17534f15069310a7fe304bfa92c6c930cb06e920c231aebdcd56c67638
name: gensoft-pixman-0.38.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-pixman-0.38.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pixman-0.38.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Pixman is a library that provides low-level pixel manipulation features such as image compositing and trapezoid rasterization.

description:
  Pixman is a library that provides low-level pixel manipulation features such as image compositing and trapezoid rasterization.


pkgId: 856caef1da93f53784fa4fab3626a4aaad38e04bd006a6fb46214416b8a27c2a
name: gensoft-pixy-2.0.0.beta12
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-pixy-2.0.0.beta12-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pixy-2.0.0.beta12-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  An unbiased estimation of average nucleotide diversity within (<CF><80>) and between (dxy) populations from a VCF

description:
  An unbiased estimation of average nucleotide diversity within (<CF><80>) and between (dxy) populations from a VCF


pkgId: 0dff40fbdb29ef4d5145e974afbfe76c677e8fa77ee6106c63d1914ab41b95eb
name: gensoft-plassembler-1.6.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-plassembler-1.6.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-plassembler-1.6.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates

description:
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates


pkgId: c261dd4fedb28ecb262dcd2e4c95b695d065bd44aa07455330eaf2ecce802ebb
name: gensoft-plumed-2.7.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: cf93e8e56ac6
rpm_sourcerpm: gensoft-plumed-2.7.2-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-plumed-2.7.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an open-source, community-developed library that provides a wide range of different methods, which include enhanced-sampling algorithms free-energy methods tools to analyze the vast amounts of data produced by molecular dynamics (MD) simulations.

description:
  an open-source, community-developed library that provides a wide range of different methods, which include enhanced-sampling algorithms free-energy methods tools to analyze the vast amounts of data produced by molecular dynamics (MD) simulations.


pkgId: e8f78a229572b07783a950acf6fa52c21da64868af2e289af7f708b97e8b5425
name: gensoft-poa-V2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5c8a3e817ddb
rpm_sourcerpm: gensoft-poa-V2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-poa-V2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  POA is Partial Order Alignment, a fast program for multiple sequence alignment in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment.

description:
  POA is Partial Order Alignment, a fast program for multiple sequence alignment in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment.


pkgId: 50c637129c9887a2b1a52dc84397eda142099357b5f924d673a6f4364723465a
name: gensoft-pointfinder-3.1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d7944a7a53ca
rpm_sourcerpm: gensoft-pointfinder-3.1.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pointfinder-3.1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The PointFinder service contains one python script PointFinder.py which is the script of the latest version of the PointFinder service. The method detects chromosomal mutations predictive of drug resistance based on WGS data.

description:
  The PointFinder service contains one python script PointFinder.py which is the script of the latest version of the PointFinder service. The method detects chromosomal mutations predictive of drug resistance based on WGS data.


pkgId: dd4e6e8c2c42bf42492bf415b92640209b8ab44c6534ae48c379500c9bf0dc17
name: gensoft-popscle-0.1-beta
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2a958d31a356
rpm_sourcerpm: gensoft-popscle-0.1-beta-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-popscle-0.1-beta-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools

description:
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools


pkgId: 33e90c7a20f954e13a61909fe0e2c1877dd5b1a7845bcd3d8efa0f1472bb240f
name: gensoft-pplacer-v1.1-alpha19
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3e5a31d3088c
rpm_sourcerpm: gensoft-pplacer-v1.1-alpha19-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pplacer-v1.1-alpha19-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  pplacer suite of programs. pplacer places reads on a phylogenetic tree. guppy (Grand Unified Phylogenetic Placement Yanalyzer) yanalyzes them. rppr is a helpful tool for working with reference packages.

description:
  pplacer suite of programs. pplacer places reads on a phylogenetic tree. guppy (Grand Unified Phylogenetic Placement Yanalyzer) yanalyzes them. rppr is a helpful tool for working with reference packages.


pkgId: d80f1662943d3b8109bcbf2bf7bcf08f7c95cb7e07f31c0a6cf57bbf7fd9b215
name: gensoft-prank-170427
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3fa385687dbb
rpm_sourcerpm: gensoft-prank-170427-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-prank-170427-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. Its based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences. These pages aim to explain how to install and use PRANK.

description:
  a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. Its based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences. These pages aim to explain how to install and use PRANK.


pkgId: 7ec65e0b89415f01cf62902b331f1d9906df31cf7c09dbc987e36488ba9ed428
name: gensoft-primux-20.07.2014
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7aa5883b5935
rpm_sourcerpm: gensoft-primux-20.07.2014-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-primux-20.07.2014-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PriMux is a new software package for selecting multiplex compatible, degenerate primers and probes to detect diverse targets such as viruses.

description:
  PriMux is a new software package for selecting multiplex compatible, degenerate primers and probes to detect diverse targets such as viruses.


pkgId: 5353374450f9367f656d898f4c6340bab648a04791fd998875ff18397a956a0a
name: gensoft-prinseq-0.20.4
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 223ee449b8e3
rpm_sourcerpm: gensoft-prinseq-0.20.4-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-prinseq-0.20.4-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PRINSEQ can be used to filter, reformat, or trim your genomic and metagenomic sequence data. It generates summary statistics of your sequences in graphical and tabular format

description:
  PRINSEQ can be used to filter, reformat, or trim your genomic and metagenomic sequence data. It generates summary statistics of your sequences in graphical and tabular format


pkgId: 8b884674fd164e7f272a8aa0f1e5f9685a137952e19f274cf0ed5193168be0d8
name: gensoft-probcons-1.12
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: bde4fe6d1442
rpm_sourcerpm: gensoft-probcons-1.12-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-probcons-1.12-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PROBCONS is an efficient protein multiple sequence alignment program, which has demonstrated a statistically significant improvement in accuracy compared to several leading alignment tools.

description:
  PROBCONS is an efficient protein multiple sequence alignment program, which has demonstrated a statistically significant improvement in accuracy compared to several leading alignment tools.


pkgId: 8046369b9e6238efa2f41e3fab349802b40fc151c105ab13ab2f3fd204e7b41b
name: gensoft-probconsRNA-1.12
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7d8e4f116e8f
rpm_sourcerpm: gensoft-probconsRNA-1.12-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-probconsRNA-1.12-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Probabilistic Consistency-based Multiple Alignment of Nucleotide Sequences. probconsRNA is an experimental version of PROBCONS with parameters estimated via unsupervised training on BRAliBASE II

description:
  Probabilistic Consistency-based Multiple Alignment of Nucleotide Sequences. probconsRNA is an experimental version of PROBCONS with parameters estimated via unsupervised training on BRAliBASE II


pkgId: 7a3fa3d1d5ee4380fb9c4306620c58a1aff883ca86e3e1d5c9dca5bfb59c825d
name: gensoft-prodigal-2.6.3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-prodigal-2.6.3-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-prodigal-2.6.3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program

description:
  (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program


pkgId: ef5dcb4c2f19f0a3bb9d73668f6f2f49a9c14deaa9b7fed9f3b699ba59083f56
name: gensoft-prodigal-gv-2.9.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 6b0ad70bb999
rpm_sourcerpm: gensoft-prodigal-gv-2.9.0-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-prodigal-gv-2.9.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes. It includes ten models added to the metagenome mode

description:
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes. It includes ten models added to the metagenome mode


pkgId: ba7b01fa977e925886d8dbd034a7b06a3feda147910ff77209aabb597ba6e44c
name: gensoft-proj-7.0.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a6119caaf269
rpm_sourcerpm: gensoft-proj-7.0.0-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-proj-7.0.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PROJ is a generic coordinate transformation software, that transforms geospatial coordinates from one coordinate reference system (CRS) to another. This includes cartographic projections as well as geodetic transformations.

description:
  PROJ is a generic coordinate transformation software, that transforms geospatial coordinates from one coordinate reference system (CRS) to another. This includes cartographic projections as well as geodetic transformations.


pkgId: 809189b72db1d98fc47597576d266d6226bd67af5255be69a62af85dbbeb14b0
name: gensoft-protobuf-3.11.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-protobuf-3.11.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-protobuf-3.11.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Protocol Buffers (a.k.a., protobuf) are Google s language-neutral, platform-neutral, extensible mechanism for serializing structured data.

description:
  Protocol Buffers (a.k.a., protobuf) are Google s language-neutral, platform-neutral, extensible mechanism for serializing structured data.


pkgId: 8756c6d3e2ac0eddae2719ba6e91000035d3ded823ac7575ae1bd8a3aa0c17ee
name: gensoft-pseudofinder-1.1.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-pseudofinder-1.1.0-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pseudofinder-1.1.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a bioinformatics tool that detects pseudogene candidates from annotated genbank files of bacterial and archaeal genomes

description:
  a bioinformatics tool that detects pseudogene candidates from annotated genbank files of bacterial and archaeal genomes


pkgId: 94e720805106cfae8f315b6cf9d5e7e5ef154fce708de42f382cd4b1e3613073
name: gensoft-psipred-4.02
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b48cefb5cbb6
rpm_sourcerpm: gensoft-psipred-4.02-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-psipred-4.02-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PSIPRED is a  simple and accurate secondary structure prediction method, incorporating two feed-forward neural networks which perform an analysis on output obtained from PSI-BLAST (Position Specific Iterated - BLAST). Using a very stringent cross validation method to evaluate the methods performance

description:
  PSIPRED is a  simple and accurate secondary structure prediction method, incorporating two feed-forward neural networks which perform an analysis on output obtained from PSI-BLAST (Position Specific Iterated - BLAST). Using a very stringent cross validation method to evaluate the methods performance


pkgId: d0df3b5824734c077ea54dae0499363470c23afc0195be4e5fbb6f601b589c49
name: gensoft-pstreams-1.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-pstreams-1.0.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pstreams-1.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A C++ IOStream-based replacement for popen(), allowing I/O on all of the child process stdin, stdout and stderr

description:
  A C++ IOStream-based replacement for popen(), allowing I/O on all of the child process stdin, stdout and stderr


pkgId: 6127a792751a8d5d73bec48e40d84f90a255822b399b00962f560ae81eb9fa20
name: gensoft-pullseq-1.0.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 45fd4c1c8268
rpm_sourcerpm: gensoft-pullseq-1.0.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pullseq-1.0.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Software to extract sequence from a fasta or fastq. Also filter sequences by a minimum length or maximum length.

description:
  Software to extract sequence from a fasta or fastq. Also filter sequences by a minimum length or maximum length.


pkgId: 7bcf41d06dded1c2eb66d34af53649d8b7bdb2f96d4e8166baa22238c96c8c23
name: gensoft-puzzle-5.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 71f89f7a2e86
rpm_sourcerpm: gensoft-puzzle-5.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-puzzle-5.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood

description:
  A computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood


pkgId: e049c529dadea5989b55b8057c0a48210a80ad3b017249972c790e4fd987d2fd
name: gensoft-pyDNase-0.3.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8478019f29db
rpm_sourcerpm: gensoft-pyDNase-0.3.0-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-pyDNase-0.3.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  pyDNase is a suite of tools for analysing DNase-seq data - pyDNase comes with several analysis scripts covering several common use cases of DNase-seq analysis, and also an implementation of the Wellington, Wellington 1D, and Wellington-boostrap footprinting algorithms.

description:
  pyDNase is a suite of tools for analysing DNase-seq data - pyDNase comes with several analysis scripts covering several common use cases of DNase-seq analysis, and also an implementation of the Wellington, Wellington 1D, and Wellington-boostrap footprinting algorithms.


pkgId: a4e64e5d0e9b4c27a3c3b1c49727be8fb60f592d0840f4d56c171cda8c1d57bf
name: gensoft-pyani-0.2.10
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 345ddfccadad
rpm_sourcerpm: gensoft-pyani-0.2.10-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pyani-0.2.10-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  pyani is a Python3 module and script that provides support for calculating average nucleotide identity (ANI) and related measures for whole genome comparisons, and rendering relevant graphical summary output.

description:
  pyani is a Python3 module and script that provides support for calculating average nucleotide identity (ANI) and related measures for whole genome comparisons, and rendering relevant graphical summary output.


pkgId: 578d1cc8eb70a36b29e4173d5acef6d32a24114c232dc1e697a88aafa706d821
name: gensoft-pyani-plus-1.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-pyani-plus-1.0.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pyani-plus-1.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  pyani-plus is a Python package that provides support for calculating average nucleotide identity (ANI) and related measures for whole genome comparisons, and rendering relevant graphical summary output.

description:
  pyani-plus is a Python package that provides support for calculating average nucleotide identity (ANI) and related measures for whole genome comparisons, and rendering relevant graphical summary output.


pkgId: 635fa95990e99b4725dc457117f61a4301035059507d122670c4c02f2d52a5d7
name: gensoft-pycoQC-2.5.0.23
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8868be3e65a1
rpm_sourcerpm: gensoft-pycoQC-2.5.0.23-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-pycoQC-2.5.0.23-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data

description:
  computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data


pkgId: 78f692ae3ce093e3773a051883acae7b5b9b5fd270d0272ff5982a2b21bfb4b0
name: gensoft-pypolca-0.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: builder
rpm_sourcerpm: gensoft-pypolca-0.3.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pypolca-0.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Standalone Python re-implementation of the POLCA polisher from MaSuRCA genome assembly and analysis toolkit.

description:
  Standalone Python re-implementation of the POLCA polisher from MaSuRCA genome assembly and analysis toolkit.


pkgId: fbfff95b084b8454b9528afafae78008eddff2d84ef8cf2413a88d2a8218def9
name: gensoft-pypy-2.7-v7.3.3
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-pypy-2.7-v7.3.3-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pypy-2.7-v7.3.3-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PyPy is an interpreter that implements the Python programming language, based on the RPython compiler framework for dynamic language implementations. This package includes numpy and scipy

description:
  PyPy is an interpreter that implements the Python programming language, based on the RPython compiler framework for dynamic language implementations. This package includes numpy and scipy


pkgId: 0b6ee0045c437fb1551901f703a0485fa2ce27dfa38b23df55db912e45e69576
name: gensoft-pyseer-1.3.10
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-pyseer-1.3.10-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-pyseer-1.3.10-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  pyseer is a python reimplementation of seer, which was written in C++. pyseer uses linear models with fixed or mixed effects to estimate the effect of genetic variation in a bacterial population on a phenotype of interest, while accounting for potentially very strong confounding population structure. This allows for genome-wide association studies (GWAS) to be performed in clonal organisms such as bacteria and viruses.

description:
  pyseer is a python reimplementation of seer, which was written in C++. pyseer uses linear models with fixed or mixed effects to estimate the effect of genetic variation in a bacterial population on a phenotype of interest, while accounting for potentially very strong confounding population structure. This allows for genome-wide association studies (GWAS) to be performed in clonal organisms such as bacteria and viruses.


pkgId: 9512a1baa31a6bde87c36f072d546c8afe54c042885ffe74aafd66e1fb1f948d
name: gensoft-qaf_demux-0.1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-qaf_demux-0.1.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-qaf_demux-0.1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  This program demultiplexes fastq data having "in-line" barcodes, based on a given list of barcodes and a barcode start position. It tries to assign each fastq record to the most likely barcode, taking into account the sequence qualities (interpreted as being sanger-encoded).

description:
  This program demultiplexes fastq data having "in-line" barcodes, based on a given list of barcodes and a barcode start position. It tries to assign each fastq record to the most likely barcode, taking into account the sequence qualities (interpreted as being sanger-encoded).


pkgId: 5b90f2c48cad73574a8dbd386a32fbc85b6bbfc2597a9097aa456c253ffaecfb
name: gensoft-qcat-1.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-qcat-1.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-qcat-1.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files. It accepts basecalled FASTQ files and splits the reads into into separate FASTQ files based on their barcode. Qcat makes the demultiplexing algorithms used in albacore/guppy and EPI2ME available to be used locally with FASTQ files. Currently qcat implements the EPI2ME algorithm.

description:
  command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files. It accepts basecalled FASTQ files and splits the reads into into separate FASTQ files based on their barcode. Qcat makes the demultiplexing algorithms used in albacore/guppy and EPI2ME available to be used locally with FASTQ files. Currently qcat implements the EPI2ME algorithm.


pkgId: 15d1a75ae7587344087549b0786abf7b387536b9a1b87904cfa720f92ef4faea
name: gensoft-qhull-2019.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-qhull-2019.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-qhull-2019.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. It handles roundoff errors from floating point arithmetic. It computes volumes, surface areas, and approximations to the convex hull.

description:
  Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. It handles roundoff errors from floating point arithmetic. It computes volumes, surface areas, and approximations to the convex hull.


pkgId: 863a5ab9133e0e2c93d19d684fa761c697e7d27bafe061d6ddbb58416b372ec9
name: gensoft-qiime2-2020.11.1
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-qiime2-2020.11.1-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-qiime2-2020.11.1-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed.

description:
  QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed.


pkgId: 5d199700f93332156469ee885f07a626b1538ddff0fe4632d121ac3cf3468754
name: gensoft-quast-5.0.2
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-quast-5.0.2-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-quast-5.0.2-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Quality Assessment Tool for Genome Assemblies. QUAST performs fast and convenient quality evaluation and comparison of genome assemblies.

description:
  Quality Assessment Tool for Genome Assemblies. QUAST performs fast and convenient quality evaluation and comparison of genome assemblies.


pkgId: 88361729d9a518981a0bcfe1e985c879d16875bf9400f46d20a66601922cb249
name: gensoft-quip-1.1.8
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 45a00a05f8b5
rpm_sourcerpm: gensoft-quip-1.1.8-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-quip-1.1.8-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in the FASTQ and SAM/BAM formats, compressing large datasets to as little as 15% of their original size.

description:
  Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in the FASTQ and SAM/BAM formats, compressing large datasets to as little as 15% of their original size.


pkgId: c07cd58933ac4c68728a07568d5ff7329d2987c0a2ccd0769e768e37542c3bb4
name: gensoft-ra-0.2.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0f9642f49d56
rpm_sourcerpm: gensoft-ra-0.2.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ra-0.2.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Ra is as a fast and easy to use assembler for raw reads generated by third generation sequencing. It consists of minimap2, Rala and Racon

description:
  Ra is as a fast and easy to use assembler for raw reads generated by third generation sequencing. It consists of minimap2, Rala and Racon


pkgId: 6be347818eace5fcb10fa012d32b7e42a0043983e5f9edbbde25a5dbf4bc0484
name: gensoft-racon-1.4.3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-racon-1.4.3-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-racon-1.4.3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Racon is intended as a standalone consensus module to correct raw contigs generated by rapid assembly methods which do not include a consensus step, such as Miniasm.

description:
  Racon is intended as a standalone consensus module to correct raw contigs generated by rapid assembly methods which do not include a consensus step, such as Miniasm.


pkgId: db393967ee50c708a92e4b5bcddc846587db2a359a9ee15c60ac052d1be07ad9
name: gensoft-rala-1.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b1db8cd25d0b
rpm_sourcerpm: gensoft-rala-1.0.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-rala-1.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Rala is intended as a standalone layout module to assemble raw reads generated by third generation sequencing. It trims sequence adapters, purges chimeric sequences and removes repeat-induced overlaps by examining sequence pile-o-gram. Afterwards, an assembly graph is built and simplified in the default way, i.e. applied are transitive reduction, tipping and bubble popping. Leftover tangles are resolved by laying out the graph in a 2D plane with the help of the force directed placement algorithm, and long edges are removed

description:
  Rala is intended as a standalone layout module to assemble raw reads generated by third generation sequencing. It trims sequence adapters, purges chimeric sequences and removes repeat-induced overlaps by examining sequence pile-o-gram. Afterwards, an assembly graph is built and simplified in the default way, i.e. applied are transitive reduction, tipping and bubble popping. Leftover tangles are resolved by laying out the graph in a 2D plane with the help of the force directed placement algorithm, and long edges are removed


pkgId: 9f20f1dbf55ea1d961d8068e10588b18ccd98d0d6cfd22c6fadeab639debd49f
name: gensoft-rapidNJ-2.3.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: acf15cfc1d72
rpm_sourcerpm: gensoft-rapidNJ-2.3.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-rapidNJ-2.3.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations.

description:
  RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations.


pkgId: 877c84dc97d8e670cfa746541e4478598f4675530dcf00bd9c4158615ee542f1
name: gensoft-raxml-ng-1.0.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-raxml-ng-1.0.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-raxml-ng-1.0.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree Pruning and Regrafting (SPR) moves, which allows to quickly navigate to the best-known ML tree. RAxML-NG is a successor of RAxML (Stamatakis 2014) and leverages the highly optimized likelihood computation implemented in libpll (Flouri et al. 2014).

description:
  RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree Pruning and Regrafting (SPR) moves, which allows to quickly navigate to the best-known ML tree. RAxML-NG is a successor of RAxML (Stamatakis 2014) and leverages the highly optimized likelihood computation implemented in libpll (Flouri et al. 2014).


pkgId: 7c39d5bb465aad31d904815c755936e3b7f6641bd50f14ed6c38b304bd33a9f1
name: gensoft-rbvotree-1.00
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7c26cac3ac32
rpm_sourcerpm: gensoft-rbvotree-1.00-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-rbvotree-1.00-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Report bootstrap values found with consensus program (after bootstrap analysis) on related tree found with phylogeny algorithm without bootstrap analysis

description:
  Report bootstrap values found with consensus program (after bootstrap analysis) on related tree found with phylogeny algorithm without bootstrap analysis


pkgId: a5ffc967231e1328d871a0f9624dd6edbb41fa290931cc51e7ec76329116a085
name: gensoft-rdp_classifier-2.12
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-rdp_classifier-2.12-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-rdp_classifier-2.12-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment.

description:
  a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment.


pkgId: 1ea818831bbd76fe98a5373cce16fb610dec60ec981aa551f1c9bffd734964d0
name: gensoft-relion-3.1.1
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e100dc73f4a3
rpm_sourcerpm: gensoft-relion-3.1.1-4.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-relion-3.1.1-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. It is developed in the research group of Sjors Scheres at the MRC Laboratory of Molecular Biology.

description:
  RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. It is developed in the research group of Sjors Scheres at the MRC Laboratory of Molecular Biology.


pkgId: 0139a16610da29d64706883d73145fcb2b0b589e1e5f59ce152f04cc97085409
name: gensoft-remove_duplicates_from_sorted_fastq-0.1.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-remove_duplicates_from_sorted_fastq-0.1.1.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-remove_duplicates_from_sorted_fastq-0.1.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  merges successive FASTQ records with the same sequence, retains the best quality at each position, and assigns the name of the first record to the result.

description:
  merges successive FASTQ records with the same sequence, retains the best quality at each position, and assigns the name of the first record to the result.


pkgId: 92a722c348d493e4b618cf392e3cc80f5cf5d4b771554b7bd20f0d2692f3ff69
name: gensoft-repast_hpc-2.3.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 41d450f17858
rpm_sourcerpm: gensoft-repast_hpc-2.3.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-repast_hpc-2.3.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a next generation agent-based modeling system intended for large-scale distributed computing platforms. It implements the core Repast Simphony concepts (e.g. contexts and projections), modifying them to work in a parallel distributed environment.

description:
  a next generation agent-based modeling system intended for large-scale distributed computing platforms. It implements the core Repast Simphony concepts (e.g. contexts and projections), modifying them to work in a parallel distributed environment.


pkgId: 3e2b8e7190c38701112583c19d3a4dbacdf11b6b1557e05d3f4e9c37bb17de88
name: gensoft-resfinder-3.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f36ca3098fbd
rpm_sourcerpm: gensoft-resfinder-3.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-resfinder-3.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Calculates antibiotic resistance genes based on a BLAST alignment of the input sequence file and the specified allele set. If possible the ST will be given

description:
  Calculates antibiotic resistance genes based on a BLAST alignment of the input sequence file and the specified allele set. If possible the ST will be given


pkgId: ceae5d8a1af7c179072b4eef55d596330d422b7da23861fff5fd0f836590f45f
name: gensoft-rgi-6.0.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-rgi-6.0.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-rgi-6.0.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

description:
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.


pkgId: 559458350e7a2eb61404e559e232d9dd7f9d8ca72fc8ea30ac3ce2fd4a5ca502
name: gensoft-rmblastn-2.10.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-rmblastn-2.10.0-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-rmblastn-2.10.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program rmblastn for use with RepeatMasker and RepeatModeler.

description:
  RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program rmblastn for use with RepeatMasker and RepeatModeler.


pkgId: 32b8577d79f474850f8a93fe8e8ae8c0f1b6c4f344560f826b595df4feed2881
name: gensoft-rmsFinder-1.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: maestro-builder.maestro.pasteur.fr
rpm_sourcerpm: gensoft-rmsFinder-1.0.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-rmsFinder-1.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A tool for finding Type II restriction-modification systems (RMS) in bacterial genomes and predicting their target sequences.

description:
  A tool for finding Type II restriction-modification systems (RMS) in bacterial genomes and predicting their target sequences.


pkgId: a11accbe3d19a2fc2c4def4c975b1b7fcc60b30f1b77b411c62dbbfd02e8765d
name: gensoft-ruby-2.7.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-ruby-2.7.0-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ruby-2.7.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.

description:
  A dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.


pkgId: c39ec76dd297c4269912a5e9fec3b488e725c2c44e4c94055b075dfd4d31b21b
name: gensoft-rust-mdbg-1.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b04f8fa9a618
rpm_sourcerpm: gensoft-rust-mdbg-1.0.1-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-rust-mdbg-1.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  rust-mdbg is an ultra-fast minimizer-space de Bruijn graph (mdBG) implementation, geared towards the assembly of long and accurate reads such as PacBio HiFi.

description:
  rust-mdbg is an ultra-fast minimizer-space de Bruijn graph (mdBG) implementation, geared towards the assembly of long and accurate reads such as PacBio HiFi.


pkgId: c447df19dc89b26ec814ce11ad53a539c0a9ff746ca39575de70215b530293cc
name: gensoft-rvtests-2.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d37d6d8659e6
rpm_sourcerpm: gensoft-rvtests-2.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-rvtests-2.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Rvtests, which stands for Rare Variant tests, is a flexible software package for genetic association analysis for sequence datasets.

description:
  Rvtests, which stands for Rare Variant tests, is a flexible software package for genetic association analysis for sequence datasets.


pkgId: b7cdd483099c972f53053e9647ac245e21dc350aeb642ea18e0bed440d7d5638
name: gensoft-sambamba-0.7.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-sambamba-0.7.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-sambamba-0.7.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Sambamba is a high performance highly parallel robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files.

description:
  Sambamba is a high performance highly parallel robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files.


pkgId: 0213551b3ad541f6581a6bc9fc82532181a4106261c814918ab106a16e09de42
name: gensoft-samblaster-v.0.1.24
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dfad5c6ac180
rpm_sourcerpm: gensoft-samblaster-v.0.1.24-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-samblaster-v.0.1.24-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file.

description:
  samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file.


pkgId: 9a12247dde882a1a70a2ac7ce15422579624d8299efa805b2602f91037a425d3
name: gensoft-samstat-1.5.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ed63017e5546
rpm_sourcerpm: gensoft-samstat-1.5.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-samstat-1.5.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  display statistics of large sequence files from next generation sequencing projects stored in SAM/BAM format

description:
  display statistics of large sequence files from next generation sequencing projects stored in SAM/BAM format


pkgId: 3a57ab2b894a4577ba4e40bde1d633fbf33ceec1cdaf209aca2524165147b6c2
name: gensoft-samtools-0.1.18
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: samtools-1.14
rpm_sourcerpm: gensoft-samtools-0.1.18-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-samtools-0.1.18-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format

description:
  SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format


pkgId: d8c56ffece4c969e6b1be753311d4533c2d2ac1bace9486fe1cee202739e65f5
name: gensoft-scalasca-2.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8fdca11087b1
rpm_sourcerpm: gensoft-scalasca-2.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-scalasca-2.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior

description:
  a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior


pkgId: e05a4081e2565dcd157618f25b0288a9f1e2cfe612835ac0b61c9fad90825a03
name: gensoft-scalpel-0.5.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 98582c52fc24
rpm_sourcerpm: gensoft-scalpel-0.5.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-scalpel-0.5.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  software package for detecting INDELs (INsertions and DELetions) mutations in a reference genome which has been sequenced with next-generation sequencing technology (e.g., Illumina). Scalpel is designed to perform localized micro-assembly of specific regions of interest with the goal of detecting mutations with high accuracy and increased power. It is based on the de Bruijn graph assembly paradigm and implements an on-the-fly repeat composition analysis coupled with a self-tuning k-mer strategy to increase specificity in regions characterized by complex repeat structures

description:
  software package for detecting INDELs (INsertions and DELetions) mutations in a reference genome which has been sequenced with next-generation sequencing technology (e.g., Illumina). Scalpel is designed to perform localized micro-assembly of specific regions of interest with the goal of detecting mutations with high accuracy and increased power. It is based on the de Bruijn graph assembly paradigm and implements an on-the-fly repeat composition analysis coupled with a self-tuning k-mer strategy to increase specificity in regions characterized by complex repeat structures


pkgId: 7bcc318f80e2d52d7733588284f2e6fd9f9690915fc7c736dafad9adcc5d2f38
name: gensoft-scotch-6.0.9
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9ce970a23518
rpm_sourcerpm: gensoft-scotch-6.0.9-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-scotch-6.0.9-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.

description:
  Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.


pkgId: b44370032bae3fabc61256fb90b6c5ac1c8724eba614c093539bf4fed45280c4
name: gensoft-scripture-beta
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5ae562b20e81
rpm_sourcerpm: gensoft-scripture-beta-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-scripture-beta-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a method for transcriptome reconstruction that relies solely on RNA-Seq reads and an assembled genome

description:
  a method for transcriptome reconstruction that relies solely on RNA-Seq reads and an assembled genome


pkgId: 00fd1ff39a8b75bd2ebf03d5faca91c6d9bff1bafb0e1b41e5419de917ab71a9
name: gensoft-sdsl-lite-2.1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-sdsl-lite-2.1.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-sdsl-lite-2.1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures.

description:
  The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures.


pkgId: 71bce74c58979911a9e60d4f08c5e8aa73957e36a15f935d078f9b1d832efd96
name: gensoft-seaview-5.0.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-seaview-5.0.1-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-seaview-5.0.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SeaView is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny.

description:
  SeaView is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny.


pkgId: 107799ec4f31703fc945294df44a5514c5a0a1bd4a9f404f1fa86a3acb4da382
name: gensoft-seer-1.1.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9b4221f05162
rpm_sourcerpm: gensoft-seer-1.1.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-seer-1.1.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Sequence element enrichment analysis. Find sequence elements (words/kmers) that are enriched in samples with a given phenotype, which may be binary or continuous.

description:
  Sequence element enrichment analysis. Find sequence elements (words/kmers) that are enriched in samples with a given phenotype, which may be binary or continuous.


pkgId: 987c0203f84efa631183dae62c4235596a3285748647ebf35a25b4ea4c91f58f
name: gensoft-seq-gen-1.3.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2e222ed234c0
rpm_sourcerpm: gensoft-seq-gen-1.3.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-seq-gen-1.3.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A program that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process

description:
  A program that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process


pkgId: 7aa1a33a0fcf2e28adebb84727d8a0c29cca26a300bcb72f2a32e05d56678572
name: gensoft-seqan-library-1.4.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d66760939f2c
rpm_sourcerpm: gensoft-seqan-library-1.4.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-seqan-library-1.4.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data

description:
  an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data


pkgId: c342148078b195a1fad3dc3c8ac4e6955a3445f2d9f93b2268148b035e675425
name: gensoft-seqtk-1.0-r68e
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-seqtk-1.0-r68e-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-seqtk-1.0-r68e-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip. Tabtk is a tool for processing TAB/SPACE-delimited data

description:
  Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip. Tabtk is a tool for processing TAB/SPACE-delimited data


pkgId: c303994b7c95d2a2a4d09684de5b0da73d97d46c3d9bea2a1c42041e8fa6cd89
name: gensoft-seqwish-0.7.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-seqwish-0.7.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-seqwish-0.7.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  seqwish implements a lossless conversion from pairwise alignments between sequences to a variation graph encoding the sequences and their alignments

description:
  seqwish implements a lossless conversion from pairwise alignments between sequences to a variation graph encoding the sequences and their alignments


pkgId: 393fe55d3abf70e396da02ce179024c1e72f0eb8be722f1ad2551fbf6bc5739c
name: gensoft-shapeit-2.r904
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0c4f6735fca8
rpm_sourcerpm: gensoft-shapeit-2.r904-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-shapeit-2.r904-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data.

description:
  SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data.


pkgId: 2c1179fa124568afd6b4171d4aee03fb8b82c42d13a6a50983d71b3c19e9eca3
name: gensoft-shapemapper-2.1.5
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b8d836b93482
rpm_sourcerpm: gensoft-shapemapper-2.1.5-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-shapemapper-2.1.5-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ShapeMapper automates the calculation of RNA structure probing reactivities from mutational profiling (MaP) experiments, in which chemical adducts on RNA are detected as internal mutations in cDNA through reverse transcription and read out by massively parallel sequencing.

description:
  ShapeMapper automates the calculation of RNA structure probing reactivities from mutational profiling (MaP) experiments, in which chemical adducts on RNA are detected as internal mutations in cDNA through reverse transcription and read out by massively parallel sequencing.


pkgId: 1fd6b863fcfcb4f5bc05650496babc4f0182399f320c3dc8d3866fea24755662
name: gensoft-shigatyper-1.0.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d37d6d8659e6
rpm_sourcerpm: gensoft-shigatyper-1.0.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-shigatyper-1.0.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  tool designed to determine Shigella serotype using fastq paired end reads with low computation requirement

description:
  tool designed to determine Shigella serotype using fastq paired end reads with low computation requirement


pkgId: 55d5ff2eaa2cf40a9808e8bbddd1b30c80f40cee77e6645e878e789570c41193
name: gensoft-shovill-1.1.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d96e44c698fb
rpm_sourcerpm: gensoft-shovill-1.1.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-shovill-1.1.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Assemble bacterial isolate genomes from Illumina paired-end reads. Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too.

description:
  Assemble bacterial isolate genomes from Illumina paired-end reads. Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too.


pkgId: ee99406d46daf764270b0fb8d3984ad78a29b4b05c78cc1a7a783c154e6eea95
name: gensoft-silix-1.2.11
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 10701cf9db6f
rpm_sourcerpm: gensoft-silix-1.2.11-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-silix-1.2.11-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  clustering of homologous sequences, based on single transitive links (single linkage) with alignment coverage constraints

description:
  clustering of homologous sequences, based on single transitive links (single linkage) with alignment coverage constraints


pkgId: efcf2cc35d2797289f313730554bc9d22f9e772ddf33cffa4722e97a5abab4ce
name: gensoft-simwalk2-2.91
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ecfb0dba372d
rpm_sourcerpm: gensoft-simwalk2-2.91-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-simwalk2-2.91-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A statistical genetics computer application that uses Markov chain Monte Carlo and simulated annealing algorithms for haplotype, parametric linkage, non-parametric linkage (NPL), identity by descent (IBD) and mistyping analyses on any size of pedigree

description:
  A statistical genetics computer application that uses Markov chain Monte Carlo and simulated annealing algorithms for haplotype, parametric linkage, non-parametric linkage (NPL), identity by descent (IBD) and mistyping analyses on any size of pedigree


pkgId: 353271e71de92ab86fad6b795c70e2fd2fb6c3ff8593402d142662d2fa239cbb
name: gensoft-sistr_cmd-1.1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: db6b0d05cdf9
rpm_sourcerpm: gensoft-sistr_cmd-1.1.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-sistr_cmd-1.1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Serovar predictions from whole-genome sequence assemblies by determination of antigen gene and cgMLST gene alleles using BLAST. Mash MinHash can also be used for serovar prediction.

description:
  Serovar predictions from whole-genome sequence assemblies by determination of antigen gene and cgMLST gene alleles using BLAST. Mash MinHash can also be used for serovar prediction.


pkgId: 1eb11c56e519520082f228426dff1e387d5406eac2395659167b41f65897b8ce
name: gensoft-skewer-0.2.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 551ade5039c7
rpm_sourcerpm: gensoft-skewer-0.2.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-skewer-0.2.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.

description:
  skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.


pkgId: 4e3e7239d949e3d400b93715f41bc9ed519a3283e931b9a4b1066f99e2cf5d7a
name: gensoft-smina-7bd30e0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 576eb2e4db4e
rpm_sourcerpm: gensoft-smina-7bd30e0-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-smina-7bd30e0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  smina is a fork of Autodock Vina (http://vina.scripps.edu/) that focuses on improving scoring and minimization.

description:
  smina is a fork of Autodock Vina (http://vina.scripps.edu/) that focuses on improving scoring and minimization.


pkgId: fb380199b100396ce90896689f7664e2fbb76fba4060fb0745a82831cd93932c
name: gensoft-smufin-0.9.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d1e30a4a3285
rpm_sourcerpm: gensoft-smufin-0.9.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-smufin-0.9.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SMuFin (Somatic MUtation FINder) is a reference-free method designed to identify somatic variation on tumor genomes from the direct comparison with the corresponding normal genome of the same patient

description:
  SMuFin (Somatic MUtation FINder) is a reference-free method designed to identify somatic variation on tumor genomes from the direct comparison with the corresponding normal genome of the same patient


pkgId: d45d1e5168d880e6af1ee4eda726d538bdcce4c94714957de388999a03a62a3b
name: gensoft-snakemake-5.15.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 44db064cd34a
rpm_sourcerpm: gensoft-snakemake-5.15.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-snakemake-5.15.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style.

description:
  Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style.


pkgId: b88ab3b69f28e1070855f31f9de5caebdf251994f51a99fec5def4546c43cd2c
name: gensoft-snap-2013-11-29
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0e896a1f4dbe
rpm_sourcerpm: gensoft-snap-2013-11-29-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-snap-2013-11-29-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.

description:
  SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.


pkgId: 162642d0e59b4b4f52122cddcc7e736c3747eb77f32d60acdbddf98ac556b926
name: gensoft-snpEff-4.3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 39014f25c518
rpm_sourcerpm: gensoft-snpEff-4.3-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-snpEff-4.3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Its a variant effect predictor tool, it predicts the effect of genetic variations (SNPs, insertions, deletions and MNPs)

description:
  Its a variant effect predictor tool, it predicts the effect of genetic variations (SNPs, insertions, deletions and MNPs)


pkgId: c7487408c38216ced4a3388d40b12fb4bea72ed3e0c8cd4a706caedb76e440ad
name: gensoft-snpToolkit-2.2.9
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c1e8703d1918
rpm_sourcerpm: gensoft-snpToolkit-2.2.9-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-snpToolkit-2.2.9-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  snpToolkit allows users to Visualize the content of their VCF files. Filter annotate SNPs based on multiple criteria. Analyse your data using two dimentionality reduction methodsr, PCA and UMAP.

description:
  snpToolkit allows users to Visualize the content of their VCF files. Filter annotate SNPs based on multiple criteria. Analyse your data using two dimentionality reduction methodsr, PCA and UMAP.


pkgId: 02af60f0f22b1c05ef7d018d893aa9d3b2da3f2b46a675a53c6316500922e8fd
name: gensoft-snpstore-1.3.8
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5199816b18d3
rpm_sourcerpm: gensoft-snpstore-1.3.8-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-snpstore-1.3.8-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SnpStore is a program for SNP and indel calling in mapped next-generation sequencing read data. It features a simple threshold-based model for SNP and indel calling, and a MAQ-like Bayesian model for SNP genotype calling. Reads can optionally be realigned, using the ReAligner algorithm by Anson and Myers

description:
  SnpStore is a program for SNP and indel calling in mapped next-generation sequencing read data. It features a simple threshold-based model for SNP and indel calling, and a MAQ-like Bayesian model for SNP genotype calling. Reads can optionally be realigned, using the ReAligner algorithm by Anson and Myers


pkgId: d648e476e3c13f9d4c03ea108087de2adeadcf0a16f428e1b9097a3f4a64cf02
name: gensoft-socrates-1.13.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5a9565d4f2ce
rpm_sourcerpm: gensoft-socrates-1.13.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-socrates-1.13.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Socrates is a highly efficient and effective method for detecting genomic rearrangements in tumours that utilises split-read data. Socrates features single nucleotide resolution, high sensitivity, and high specificity in simulated data. It takes advantage of parallelism for efficient use of resources.

description:
  Socrates is a highly efficient and effective method for detecting genomic rearrangements in tumours that utilises split-read data. Socrates features single nucleotide resolution, high sensitivity, and high specificity in simulated data. It takes advantage of parallelism for efficient use of resources.


pkgId: 243d1d4c8597c7d433e45c34da08c118513caad190fab3e946366cd6b5e3204a
name: gensoft-socru-2.2.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: fcffb114285b
rpm_sourcerpm: gensoft-socru-2.2.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-socru-2.2.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Socru allows you to easily identify and communicate the order and orientation of complete genomes around ribosomal operons

description:
  Socru allows you to easily identify and communicate the order and orientation of complete genomes around ribosomal operons


pkgId: 0f1f24358c8dc6940ab33981a947add80e6eea5c89eb155b642f1190553cb9b7
name: gensoft-solar-8.5.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-solar-8.5.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-solar-8.5.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A package for genetic variance components analysis, including linkage analysis, quantitative genetic analysis, and covariate screening

description:
  A package for genetic variance components analysis, including linkage analysis, quantitative genetic analysis, and covariate screening


pkgId: 43bf5a26f4dd70a630931755dec255dfde4d103da295d3c8677d352e55b8e687
name: gensoft-sourcetracker-1.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d72f47c8eb26
rpm_sourcerpm: gensoft-sourcetracker-1.0.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-sourcetracker-1.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SourceTracker is a Bayesian approach to estimating the proportion of a novel community that comes from a set of source environments.

description:
  SourceTracker is a Bayesian approach to estimating the proportion of a novel community that comes from a set of source environments.


pkgId: 7ee793a0b12c6ae4de7b2cad75aceef8f81b8bb8764a16cf8af2f5155b330676
name: gensoft-sourmash-4.0.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-sourmash-4.0.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-sourmash-4.0.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  sourmash is a command-line tool and Python library for computing hash sketches from DNA sequences, comparing them to each other, and plotting the results. This allows you to estimate sequence similarity between even very large data sets quickly and accurately.

description:
  sourmash is a command-line tool and Python library for computing hash sketches from DNA sequences, comparing them to each other, and plotting the results. This allows you to estimate sequence similarity between even very large data sets quickly and accurately.


pkgId: 82b1be0211f838536af09af1312f4a92f1923b22966b89205846097c664b8bcb
name: gensoft-spaceranger-1.2.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-spaceranger-1.2.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-spaceranger-1.2.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a set of analysis pipelines that process Visium spatial RNA-seq output and brightfield and fluorescence microscope images in order to detect tissue, align reads, generate feature-spot matrices, perform clustering and gene expression analysis, and place spots in spatial context on the slide image.

description:
  a set of analysis pipelines that process Visium spatial RNA-seq output and brightfield and fluorescence microscope images in order to detect tissue, align reads, generate feature-spot matrices, perform clustering and gene expression analysis, and place spots in spatial context on the slide image.


pkgId: 92076fa71f3d2ad12e6b13c1a36156e03a622dfdf53890a5ba5d41465fd87303
name: gensoft-spladder-2.4.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 962f3ef1343b
rpm_sourcerpm: gensoft-spladder-2.4.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-spladder-2.4.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Splicing Adder, a toolbox for alternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized formats, transforms the annotation into a splicing graph representation, augments the splicing graph with additional information extracted from the read data, extracts alternative splicing events from the graph and quantifies the events based on the alignment data, The quantified events can then be used for differential analysis.

description:
  Splicing Adder, a toolbox for alternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized formats, transforms the annotation into a splicing graph representation, augments the splicing graph with additional information extracted from the read data, extracts alternative splicing events from the graph and quantifies the events based on the alignment data, The quantified events can then be used for differential analysis.


pkgId: 57eb24f17d6077154def5964fdc4982b3e9e4de21f63951f98d1c24931aefa24
name: gensoft-splitpipe-1.4.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-splitpipe-1.4.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-splitpipe-1.4.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  combinatorial barcoding method for single cell RNA sequencing (scRNA-seq) with dramatically improved sensitivity

description:
  combinatorial barcoding method for single cell RNA sequencing (scRNA-seq) with dramatically improved sensitivity


pkgId: 93e00d8f56c5209fa08101f8f5bbfa6eda58ea7777357bc4bb92a0645801111a
name: gensoft-squashfs-342e690
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-squashfs-342e690-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-squashfs-342e690-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Squashfs is a highly compressed read-only filesystem for Linux. Squashfs compresses both files, inodes and directories, and supports block sizes up to 1Mbytes for greater compression. It is implemented as a kernel module under VFS.

description:
  Squashfs is a highly compressed read-only filesystem for Linux. Squashfs compresses both files, inodes and directories, and supports block sizes up to 1Mbytes for greater compression. It is implemented as a kernel module under VFS.


pkgId: ab0938887b08843ca2d72eebd49c6f41fb4599b4483d7dce739d86e5376240d0
name: gensoft-squirrel-1.0.13
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-squirrel-1.0.13-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-squirrel-1.0.13-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Some QUIck Reconstruction to Resolve Evolutionary Link. Squirrel provides a rapid way of producing reliable alignments for MPXV and also enable maximum-likelihood phylogenetics pipeline tree estimation.",

description:
  Some QUIck Reconstruction to Resolve Evolutionary Link. Squirrel provides a rapid way of producing reliable alignments for MPXV and also enable maximum-likelihood phylogenetics pipeline tree estimation.",


pkgId: f6f9f5b6c68d15aac151cafdf75d16839963704b40e2c99bd058a55fa2ccffbb
name: gensoft-sra-tools-3.0.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-sra-tools-3.0.0-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-sra-tools-3.0.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives

description:
  The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives


pkgId: 60645b3203e9e068777a1405bcb74e28bfd91856d3c926b2eea7264da30e2883
name: gensoft-sra_sdk-2.10.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 67630138db94
rpm_sourcerpm: gensoft-sra_sdk-2.10.2-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-sra_sdk-2.10.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms including Roche 454 GS System, Illumina Genome Analyzer, Applied Biosystems SOLiD System, Helicos Heliscope, Complete Genomics, and Pacific Biosciences SMRT

description:
  The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms including Roche 454 GS System, Illumina Genome Analyzer, Applied Biosystems SOLiD System, Helicos Heliscope, Complete Genomics, and Pacific Biosciences SMRT


pkgId: 86d2dac0d7844767ebe5127d4c21c44e50df374c911e61f76c0f7de58445de32
name: gensoft-srst2-0.2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b49a738e019b
rpm_sourcerpm: gensoft-srst2-0.2.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-srst2-0.2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

description:
  This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.


pkgId: 64bd10830a2989ef10c094c9127350d271a4de4c82b8d0e80d783e51986fc8a7
name: gensoft-ssaha2-2.5.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f7c870e1b7e6
rpm_sourcerpm: gensoft-ssaha2-2.5.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ssaha2-2.5.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A pairwise sequence alignment program designed for the efficient mapping of sequencing reads onto genomic reference sequences

description:
  A pairwise sequence alignment program designed for the efficient mapping of sequencing reads onto genomic reference sequences


pkgId: 6ad21bab6c206e7a4f221959cb8ea18be656dc133f6046bbe7407ca986eb3b1b
name: gensoft-ssw-1.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c7f505b202b5
rpm_sourcerpm: gensoft-ssw-1.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ssw-1.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages.

description:
  SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages.


pkgId: 59890b6c8036597687b3aabe006dddc1e7ff09df76f0c80c523c72dd95859e02
name: gensoft-staden_io_lib-1.14.15
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5befb01cabde
rpm_sourcerpm: gensoft-staden_io_lib-1.14.15-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-staden_io_lib-1.14.15-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Staden Package "io_lib". This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.

description:
  Staden Package "io_lib". This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.


pkgId: f0c49b4f664b4cba51bd70ffb9411a2803c1b40c19ea4f47e5d89c10c6a6d9ca
name: gensoft-staramr-0.10.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: maestro-submit.maestro.pasteur.fr
rpm_sourcerpm: gensoft-staramr-0.10.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-staramr-0.10.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  staramr (*AMR) scans bacterial genome contigs against the ResFinder, PointFinder, and PlasmidFinder databases and compiles a summary report of detected antimicrobial resistance genes.

description:
  staramr (*AMR) scans bacterial genome contigs against the ResFinder, PointFinder, and PlasmidFinder databases and compiles a summary report of detected antimicrobial resistance genes.


pkgId: 2f43fed4cb9a79df6230afbfc4e1431ad12f367efefdd7b3af9713cb6c21f1ea
name: gensoft-strelka-2.9.10
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a7a7e301de8c
rpm_sourcerpm: gensoft-strelka-2.9.10-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-strelka-2.9.10-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Strelka is an analysis package designed to detect somatic SNVs and small indels from the aligned sequencing reads of matched tumor-normal samples.

description:
  Strelka is an analysis package designed to detect somatic SNVs and small indels from the aligned sequencing reads of matched tumor-normal samples.


pkgId: 063fe9047592e57cd2ceea9fac99453263c1f11a5c3eb889243191901c089800
name: gensoft-stringtie-2.1.1
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-stringtie-2.1.1-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-stringtie-2.1.1-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representing multiple splice variants for each gene locus.

description:
  StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representing multiple splice variants for each gene locus.


pkgId: 2f2bdb2f4b929945ac9b3a43e1ec190c429ef8f8b1b80e093ff95fed16e9acb5
name: gensoft-structure-2.3.4
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 39014f25c518
rpm_sourcerpm: gensoft-structure-2.3.4-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-structure-2.3.4-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The program structure is a free software package for using multi-locus genotype data to investigate population structure.

description:
  The program structure is a free software package for using multi-locus genotype data to investigate population structure.


pkgId: ff16396679ff132aa79f9a28560bc8e8a2215e6ba15f51fe45d4438df821260e
name: gensoft-subread-2.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: cb30443bbb8c
rpm_sourcerpm: gensoft-subread-2.0.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-subread-2.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  high-performance read alignment, quantification and mutation discovery.  The Subread package comprises a suite of software programs for processing next-gen sequencing read data

description:
  high-performance read alignment, quantification and mutation discovery.  The Subread package comprises a suite of software programs for processing next-gen sequencing read data


pkgId: d933811d4d2c1aab336d66440e062fcf6603f6853c32903bd5ae657be27690ac
name: gensoft-suma_package-v1.0.34
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 17bf3edd0dcb
rpm_sourcerpm: gensoft-suma_package-v1.0.34-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-suma_package-v1.0.34-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SUMATRA and SUMACLUST fast and exact comparison and clustering of sequences. SUMACLUST and SUMATRA aim to compare sequences in a way that is fast and exact at the same time. These tools have been developed to be adapted to the type of data generated by DNA metabarcoding, i.e. entirely sequenced, short markers.

description:
  SUMATRA and SUMACLUST fast and exact comparison and clustering of sequences. SUMACLUST and SUMATRA aim to compare sequences in a way that is fast and exact at the same time. These tools have been developed to be adapted to the type of data generated by DNA metabarcoding, i.e. entirely sequenced, short markers.


pkgId: 2e64f5006a72ec82ffed716648d93da5c7e7fab25359090789f06f95ca40a08c
name: gensoft-swarm-3.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9a9752871736
rpm_sourcerpm: gensoft-swarm-3.0.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-swarm-3.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A robust and fast clustering method for amplicon-based studies. The purpose of swarm is to provide a novel clustering algorithm to handle large sets of amplicons. Traditional clustering algorithms results are strongly input-order dependent, and rely on an arbitrary global clustering threshold. swarm results are resilient to input-order changes and rely on a small local linking threshold the maximum number of differences between two amplicons. swarm forms stable high-resolution clusters, with a high yield of biological information.

description:
  A robust and fast clustering method for amplicon-based studies. The purpose of swarm is to provide a novel clustering algorithm to handle large sets of amplicons. Traditional clustering algorithms results are strongly input-order dependent, and rely on an arbitrary global clustering threshold. swarm results are resilient to input-order changes and rely on a small local linking threshold the maximum number of differences between two amplicons. swarm forms stable high-resolution clusters, with a high yield of biological information.


pkgId: 3ddebd26a38722bddd2518fd91e5ef7a1ee47a8e819e3eb3e5dd98f42c28b21f
name: gensoft-swig-4.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-swig-4.0.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-swig-4.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.

description:
  a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.


pkgId: 5e654cc790ce417cf5d17d046d950e3eac074af2f88bee882a7ee9c45cb640bd
name: gensoft-sword-1.0.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 08997d279353
rpm_sourcerpm: gensoft-sword-1.0.4-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-sword-1.0.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SWORD (Smith Waterman On Reduced Database) is a fast and sensitive software for protein sequence alignment.

description:
  SWORD (Smith Waterman On Reduced Database) is a fast and sensitive software for protein sequence alignment.


pkgId: 7dae078caf81e76b7b39ae311924c40bfaac990a0b8fc7e34ef420ea0aed08ab
name: gensoft-tRAX-1.0.0-beta
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c893fc4c2654
rpm_sourcerpm: gensoft-tRAX-1.0.0-beta-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-tRAX-1.0.0-beta-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  tRNA Analysis of eXpression (tRAX) is a software package built for in-depth analyses of tRNA-derived small RNAs (tDRs), mature tRNAs, and inference of RNA modifications from high-throughput small RNA sequencing data

description:
  tRNA Analysis of eXpression (tRAX) is a software package built for in-depth analyses of tRNA-derived small RNAs (tDRs), mature tRNAs, and inference of RNA modifications from high-throughput small RNA sequencing data


pkgId: 1a7e219d4b76c125b562dcdefb7a49ab3bc9c1ca6b1176431ee7f43ebb73b1e4
name: gensoft-tabix-0.2.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3463bfe24982
rpm_sourcerpm: gensoft-tabix-0.2.6-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-tabix-0.2.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Generic indexer for TAB-delimited genome position files bgzip Block compression/decompression utility

description:
  Generic indexer for TAB-delimited genome position files bgzip Block compression/decompression utility


pkgId: c262a3685059953645f6d6e8e141548416cf4b7c7a4c150906b38e528787cd06
name: gensoft-tabixpp-1.1.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a23497621295
rpm_sourcerpm: gensoft-tabixpp-1.1.0-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-tabixpp-1.1.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  This is a C++ wrapper around tabix project which abstracts some of the details of opening and jumping in tabix-indexed files. installed version built on top of htslib/1.9

description:
  This is a C++ wrapper around tabix project which abstracts some of the details of opening and jumping in tabix-indexed files. installed version built on top of htslib/1.9


pkgId: 3d85e522a55b64b473d147e8d42f7f38643a664a46232a705e57d4adff2a825a
name: gensoft-tacg-4.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 288b90b25dd6
rpm_sourcerpm: gensoft-tacg-4.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-tacg-4.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Finds  short patterns and specific combinations of patterns in nucleic acids, translates DNA vs protein

description:
  Finds  short patterns and specific combinations of patterns in nucleic acids, translates DNA vs protein


pkgId: 3de7baa2be30569f0d15b9bd8110acc339a4ec6571bf072e28d5d5460f58b44f
name: gensoft-taxonkit-0.20.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build2
rpm_sourcerpm: gensoft-taxonkit-0.20.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-taxonkit-0.20.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

description:
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV


pkgId: faa94749b6b96a724a0ccbd25813a56d91b4efc74395f3cf369261ab516a2309
name: gensoft-tbb-2020.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-tbb-2020.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-tbb-2020.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.

description:
  Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.


pkgId: ce9ffec3f4121db919663e4eb20e49ecc4a2863abc77d1466b52165d9429fe75
name: gensoft-tcl-8.6.10
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e3e3c30cfcb6
rpm_sourcerpm: gensoft-tcl-8.6.10-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-tcl-8.6.10-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.

description:
  Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.


pkgId: 2772114a8e7dab7a0548942cb718e9a9bc3abdda57ab66e69c6d7e963915245f
name: gensoft-tclap-1.2.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b04f8fa9a618
rpm_sourcerpm: gensoft-tclap-1.2.5-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-tclap-1.2.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a small, flexible library that provides a simple interface for defining and accessing command line arguments.

description:
  a small, flexible library that provides a simple interface for defining and accessing command line arguments.


pkgId: cfc55138445dcfa9d947bf4338bfc3b86a220b5eca52b515e3bb37c06f6d0655
name: gensoft-tcoffee-12.00
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-tcoffee-12.00-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-tcoffee-12.00-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  T-Coffee is a collection of tools for Computing, Evaluating and Manipulating Multiple Alignments of DNA, RNA, Protein Sequences and Structures.

description:
  T-Coffee is a collection of tools for Computing, Evaluating and Manipulating Multiple Alignments of DNA, RNA, Protein Sequences and Structures.


pkgId: f15d730051b11f67ef0e3104edb3c5cd76bb9fe8b04b0dd49a4b64657ca3508e
name: gensoft-themisto-3.1.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ad11ad1309d9
rpm_sourcerpm: gensoft-themisto-3.1.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-themisto-3.1.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Themisto is a succinct colored k-mer index supporting pseudo-alignment against a database of reference sequences similar to the tool Kallisto, Bifrost and Metagraph

description:
  Themisto is a succinct colored k-mer index supporting pseudo-alignment against a database of reference sequences similar to the tool Kallisto, Bifrost and Metagraph


pkgId: 6e816db482d99a8e1da4f3a6b5cd84d261766a979b743584c1e77b6aa9629b11
name: gensoft-tipdate-1.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 47a9419ae942
rpm_sourcerpm: gensoft-tipdate-1.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-tipdate-1.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A program to estimate the rate of molecular evolution and time-scale of a phylogeny from dated sequences

description:
  A program to estimate the rate of molecular evolution and time-scale of a phylogeny from dated sequences


pkgId: dff1d37ec7423b3372ee3f8759ddd98984e8c98d9d2284dcbf431b20348378e9
name: gensoft-tk-8.6.10
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-tk-8.6.10-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-tk-8.6.10-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Tk is a graphical user interface toolkit that takes developing desktop applications to a higher level than conventional approaches.

description:
  Tk is a graphical user interface toolkit that takes developing desktop applications to a higher level than conventional approaches.


pkgId: 867e3b7ebb5a8f8ec6bcf2e38fa983e1265fc081b355ff50063c5d94449726f3
name: gensoft-topaz-0.2.4
arch: x86_64
version: 6.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-topaz-0.2.4-6.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-topaz-0.2.4-6.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

description:
  Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.


pkgId: d9677f0620568b2c2d78ded6b228868f7d2292d2c2beb26cd3381df8a1b3a40d
name: gensoft-tpot-0.11.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ad7c00b4e6e6
rpm_sourcerpm: gensoft-tpot-0.11.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-tpot-0.11.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a Python tool that automatically creates and optimizes machine learning pipelines using genetic programming.

description:
  a Python tool that automatically creates and optimizes machine learning pipelines using genetic programming.


pkgId: b95b856976b071e30ce9c141dbc41d84b80c3ff6f82f8a98688794cc696f8e52
name: gensoft-tre-0.8.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-tre-0.8.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-tre-0.8.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a lightweight, robust, and efficient POSIX compliant regexp matching library with some exciting features such as approximate (fuzzy) matching.

description:
  a lightweight, robust, and efficient POSIX compliant regexp matching library with some exciting features such as approximate (fuzzy) matching.


pkgId: 7a4f30f1fbc1515f88d6b61d833d84a0ea7bad08620fd2fabff910691424f52c
name: gensoft-treemix-1.13
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e9f04653d07f
rpm_sourcerpm: gensoft-treemix-1.13-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-treemix-1.13-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a method for inferring the patterns of population splits and mixtures in the history of a set of populations

description:
  a method for inferring the patterns of population splits and mixtures in the history of a set of populations


pkgId: ded55073eaa7e9a226f73837b06a2e6cb38a10e1b65f4577df912b85fcee0fd6
name: gensoft-treetime-0.7.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ad7c00b4e6e6
rpm_sourcerpm: gensoft-treetime-0.7.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-treetime-0.7.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  TreeTime provides routines for ancestral sequence reconstruction and the inference of molecular-clock phylogenies, i.e., a tree where all branches are scaled such that the locations of terminal nodes correspond to their sampling times and internal nodes are placed at the most likely time of divergence.

description:
  TreeTime provides routines for ancestral sequence reconstruction and the inference of molecular-clock phylogenies, i.e., a tree where all branches are scaled such that the locations of terminal nodes correspond to their sampling times and internal nodes are placed at the most likely time of divergence.


pkgId: a82c0eeec1e66924c274470251a6eb576bd0ad3c64b2b0e43f545146bd953c99
name: gensoft-trinityrnaseq-2.9.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ab4098a0a235
rpm_sourcerpm: gensoft-trinityrnaseq-2.9.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-trinityrnaseq-2.9.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a novel method for the efficient and robust de novo reconstruction of transcriptomes from Illumina RNA-seq data.

description:
  a novel method for the efficient and robust de novo reconstruction of transcriptomes from Illumina RNA-seq data.


pkgId: 52c6b25e1eafc8c3f029bbcc1f2a72e0e62526258834e3236e28db3214cbccc5
name: gensoft-ttmath-0.9.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-ttmath-0.9.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ttmath-0.9.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  TTMath is a small library which allows one to perform arithmetic operations with big unsigned integer, big signed integer and big floating point numbers. It provides standard mathematical operations like adding, subtracting, multiplying, dividing. With the library also goes a mathematical parser to help you solving mathematical expressions.

description:
  TTMath is a small library which allows one to perform arithmetic operations with big unsigned integer, big signed integer and big floating point numbers. It provides standard mathematical operations like adding, subtracting, multiplying, dividing. With the library also goes a mathematical parser to help you solving mathematical expressions.


pkgId: 14fc91c3f6a4d1026da4616116e78df55ddbb2806ad2c10b9d30d315cea4454e
name: gensoft-ucx-1.18.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-ucx-1.18.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ucx-1.18.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Unified Communication X (UCX) provides an optimized communication layer for Message Passing (MPI), PGAS/OpenSHMEM libraries and RPC/data-centric applications.

description:
  Unified Communication X (UCX) provides an optimized communication layer for Message Passing (MPI), PGAS/OpenSHMEM libraries and RPC/data-centric applications.


pkgId: b2400f2a7b774a936a5f6e5bf312c7fb748eae66262e11719d37e5072f3561e7
name: gensoft-udunits-2.2.26
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-udunits-2.2.26-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-udunits-2.2.26-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  UDUNITS package supports units of physical quantities. Its C library provides for arithmetic manipulation of units and for conversion of numeric values between compatible units.

description:
  UDUNITS package supports units of physical quantities. Its C library provides for arithmetic manipulation of units and for conversion of numeric values between compatible units.


pkgId: c93dab51a81797feaead564841779bf14abc1fe378aceb421a1774af9b4007c2
name: gensoft-unitig-counter-1.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: aae976c436ee
rpm_sourcerpm: gensoft-unitig-counter-1.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-unitig-counter-1.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Uses a compressed de Bruijn graph to count unitigs in bacterial populations. This is a slightly modified version of the unitig and graph steps in DBGWAS software, repurposed for input into pyseer

description:
  Uses a compressed de Bruijn graph to count unitigs in bacterial populations. This is a slightly modified version of the unitig and graph steps in DBGWAS software, repurposed for input into pyseer


pkgId: fb99554adda8258551f124932bf9e54ec8f5c5cb49895a6f39675cbd9dc61ec7
name: gensoft-varVAMP-1.2.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-varVAMP-1.2.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-varVAMP-1.2.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Variable VirusAMPlicons (varVAMP) design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

description:
  Variable VirusAMPlicons (varVAMP) design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.


pkgId: 65a6e5f3a0b9a48045ecd1b9110b4f810f34d2fff51191f5c6d5d98683dc7ab7
name: gensoft-varscan-2.4.2
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-varscan-2.4.2-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-varscan-2.4.2-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  tool for identifying SNPs and indels in massively parallel sequencing of individual and pooled samples

description:
  tool for identifying SNPs and indels in massively parallel sequencing of individual and pooled samples


pkgId: c555332ba9d35173d7404b71c36c210a5f397341c938cd67ae4d86e7fb08b626
name: gensoft-vcontact2-0.9.19
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 223d0e9c227e
rpm_sourcerpm: gensoft-vcontact2-0.9.19-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-vcontact2-0.9.19-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool to perform guilt-by-contig-association classification of viral genomic sequence data. It is designed to cluster and provide taxonomic context of viral metagenomic sequencing data.

description:
  a tool to perform guilt-by-contig-association classification of viral genomic sequence data. It is designed to cluster and provide taxonomic context of viral metagenomic sequencing data.


pkgId: f055a1d6979c9423429cfd5016a6d951ab481a796a0b663c3ca0523a5f5e6231
name: gensoft-viga-0.12.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-viga-0.12.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-viga-0.12.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  VIGA is a tool that annotates viral genomes automatically (using a de novo algorithm) and predict the function of their proteins using BLAST and HMMER

description:
  VIGA is a tool that annotates viral genomes automatically (using a de novo algorithm) and predict the function of their proteins using BLAST and HMMER


pkgId: 428457ed40bbf47fc729bf495212b5297451069cec4bfa1f3ad8e20ad497460f
name: gensoft-viralVerify-1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d96e44c698fb
rpm_sourcerpm: gensoft-viralVerify-1.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-viralVerify-1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  viralVerify classifies contigs (output of metaviralSPAdes or other assemblers) as viral, non-viral or uncertain, based on gene content. Also for non-viral contigs it can optionally provide plasmid/non-plasmid classification.

description:
  viralVerify classifies contigs (output of metaviralSPAdes or other assemblers) as viral, non-viral or uncertain, based on gene content. Also for non-viral contigs it can optionally provide plasmid/non-plasmid classification.


pkgId: 350a3a60c048988e6b0b88163b1dd145d6c5889b723e4c6277dd9932f09dbf14
name: gensoft-viromeqc-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 099b77605205
rpm_sourcerpm: gensoft-viromeqc-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-viromeqc-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes

description:
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes


pkgId: 0e42bfc6db2e4f0bec5a47698095c99fda80eb5d63f3101ceb260a9a84f831fa
name: gensoft-vmd_plugins-1.9.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a1eb253aa553
rpm_sourcerpm: gensoft-vmd_plugins-1.9.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-vmd_plugins-1.9.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  plugin interfaces which provide a means for extending VMD at run-time without the necessity to recompile the program

description:
  plugin interfaces which provide a means for extending VMD at run-time without the necessity to recompile the program


pkgId: 380c46d910d8b9706f5ae67b12fe74e90de556ed1e1f54c72381f666e26891ef
name: gensoft-vsearch-2.14.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-vsearch-2.14.2-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-vsearch-2.14.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool for processing metagenomic sequences  which supports searching, clustering, chimera detection, dereplication, sorting and masking. An alternative to the USEARCH tool developed by Robert C. Edgar (2010).

description:
  a tool for processing metagenomic sequences  which supports searching, clustering, chimera detection, dereplication, sorting and masking. An alternative to the USEARCH tool developed by Robert C. Edgar (2010).


pkgId: c0e68060d4aea6d8c0ed3ae2650420f90f1959ef6a3a9d776aa38a2e57dbf328
name: gensoft-warp-2.0.0dev36
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-warp-2.0.0dev36-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-warp-2.0.0dev36-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Warp is a set of tools for cryo-EM and cryo-ET data processing including, among other tools - Warp, M, WarpTools, MTools, MCore, and Noise2Map.

description:
  Warp is a set of tools for cryo-EM and cryo-ET data processing including, among other tools - Warp, M, WarpTools, MTools, MCore, and Noise2Map.


pkgId: d56fa331db6d452494de40f8f2506cbedc05ce5570317f8996419b93e14ccf69
name: gensoft-wayland-1.19.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9911b81b7a61
rpm_sourcerpm: gensoft-wayland-1.19.0-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-wayland-1.19.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Wayland is a protocol for a compositor to talk to its clients as well as a C library implementation of that protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.

description:
  Wayland is a protocol for a compositor to talk to its clients as well as a C library implementation of that protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.


pkgId: 26c71a36486fff4fcb9be5105e57ee24cc53ca9512245d7e5a3a8a82d568e0ae
name: gensoft-wtdbg2-2.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-wtdbg2-2.5-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-wtdbg2-2.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT).

description:
  a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT).


pkgId: 453fcdbbe61053bbeb5891c07405ff34964be12fb6dfdae17d477db2399cdd86
name: gensoft-wxWidgets-3.0.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e0f4fbfa7864
rpm_sourcerpm: gensoft-wxWidgets-3.0.2-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-wxWidgets-3.0.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base

description:
  wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base


pkgId: 7d4d364bf341bf0373c34ff45ef8ff46d8c431d7bba36f61e90e546dc0b16be9
name: gensoft-xcb-util-0.3.9
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-xcb-util-0.3.9-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-xcb-util-0.3.9-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The XCB util modules provides a number of libraries which sit on top of libxcb, the core X protocol library, and some of the extension libraries. These experimental libraries provide convenience functions and interfaces which make the raw X protocol more usable. Some of the libraries also provide client-side code which is not strictly part of the X protocol but which have traditionally been provided by Xlib.

description:
  The XCB util modules provides a number of libraries which sit on top of libxcb, the core X protocol library, and some of the extension libraries. These experimental libraries provide convenience functions and interfaces which make the raw X protocol more usable. Some of the libraries also provide client-side code which is not strictly part of the X protocol but which have traditionally been provided by Xlib.


pkgId: 05ac1836cf4e5bbb103a40f0ee18474966aef9dcdad11039a303cdc4fb430d72
name: gensoft-xorg-libs-1.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-xorg-libs-1.1-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-xorg-libs-1.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  the Xorg libraries provide library routines that are used within all X Window applications. this metapackage embeds following protos and libraries - compositeproto-0.4.2 fontsproto-2.1.3 recordproto-1.14.2 bigreqsproto-1.1.2 fixesproto-5.0 xproto-7.0.29 xextproto-7.3.0 xf86dgaproto-2.1 renderproto-0.11.1 randrproto-1.5.0 damageproto-1.2.1 resourceproto-1.2.0 kbproto-1.0.7 inputproto-2.3.2 videoproto-2.3.3 xf86vidmodeproto-2.3.1 glproto-1.4.17 dri2proto-2.8 dri3proto-1.0 presentproto-1.1 libpthread-stubs-0.1 xtrans-1.4.0 libfontenc-1.1.4 libXfont-1.5.4 libXfont2-2.0.4 libICE-1.0.9 libSM-1.2.3 libXau-1.0.9 libFS-1.0.8 libxshmfence-1.3 xcb-proto-1.13 libxcb-1.13 libX11-1.6.9 libXext-1.3.4 libXfixes-5.0.3 libXi-1.7.9 libXt-1.2.0 libXmu-1.1.3 libXpm-3.5.13 libXaw-1.0.13 libXcomposite-0.4.5 libXrender-0.9.10 libXrandr-1.5.2 libXft-2.3.3 libXcursor-1.2.0 libxkbfile-1.1.0 libXdamage-1.1.5 libXres-1.2.0 libXtst-1.2.3 libXv-1.0.11 libXxf86dga-1.1.5 libXxf86vm-1.1.4 libpciaccess-0.16 libXdmcp-1.1.3 xkeyboard-config-2.28 xbitmaps-1.1.2 libXScrnSaver-1.2.3

description:
  the Xorg libraries provide library routines that are used within all X Window applications. this metapackage embeds following protos and libraries - compositeproto-0.4.2 fontsproto-2.1.3 recordproto-1.14.2 bigreqsproto-1.1.2 fixesproto-5.0 xproto-7.0.29 xextproto-7.3.0 xf86dgaproto-2.1 renderproto-0.11.1 randrproto-1.5.0 damageproto-1.2.1 resourceproto-1.2.0 kbproto-1.0.7 inputproto-2.3.2 videoproto-2.3.3 xf86vidmodeproto-2.3.1 glproto-1.4.17 dri2proto-2.8 dri3proto-1.0 presentproto-1.1 libpthread-stubs-0.1 xtrans-1.4.0 libfontenc-1.1.4 libXfont-1.5.4 libXfont2-2.0.4 libICE-1.0.9 libSM-1.2.3 libXau-1.0.9 libFS-1.0.8 libxshmfence-1.3 xcb-proto-1.13 libxcb-1.13 libX11-1.6.9 libXext-1.3.4 libXfixes-5.0.3 libXi-1.7.9 libXt-1.2.0 libXmu-1.1.3 libXpm-3.5.13 libXaw-1.0.13 libXcomposite-0.4.5 libXrender-0.9.10 libXrandr-1.5.2 libXft-2.3.3 libXcursor-1.2.0 libxkbfile-1.1.0 libXdamage-1.1.5 libXres-1.2.0 libXtst-1.2.3 libXv-1.0.11 libXxf86dga-1.1.5 libXxf86vm-1.1.4 libpciaccess-0.16 libXdmcp-1.1.3 xkeyboard-config-2.28 xbitmaps-1.1.2 libXScrnSaver-1.2.3


pkgId: be9ef5f4999cbde328582c4d74513c13c71d9433ea5dc53aff5de2fa1574785c
name: gensoft-xpdf-4.03
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-xpdf-4.03-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-xpdf-4.03-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Xpdf is a viewer for Adobe free Portable Document Format (PDF) which is both fast and small and comes with some useful command-line utilities

description:
  Xpdf is a viewer for Adobe free Portable Document Format (PDF) which is both fast and small and comes with some useful command-line utilities


pkgId: 1e4f74e05b1832f09e9ebde5f90da82fb48a94c721fb900c0e00ba3f61960000
name: gensoft-xxr-3.03
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: foo
rpm_sourcerpm: gensoft-xxr-3.03-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-xxr-3.03-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  This software is able to extract putative cassette structures that fulfill the criteria established from analysis of previously known cassettes from integrons and superintegrons

description:
  This software is able to extract putative cassette structures that fulfill the criteria established from analysis of previously known cassettes from integrons and superintegrons


pkgId: 91eb5ad037a2591bfd257b35313187ace9ce5d23a3526eefed2bad833c59e744
name: gensoft-yasm-1.3.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 22e5630b34ad
rpm_sourcerpm: gensoft-yasm-1.3.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-yasm-1.3.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Yasm is a complete rewrite of the NASM-2.15.05 assembler. It supports the x86 and AMD64 instruction sets, accepts NASM and GAS assembler syntaxes and outputs binary, ELF32 and ELF64 object formats.

description:
  Yasm is a complete rewrite of the NASM-2.15.05 assembler. It supports the x86 and AMD64 instruction sets, accepts NASM and GAS assembler syntaxes and outputs binary, ELF32 and ELF64 object formats.


pkgId: 182f502cdf770c34bde57b4a477c9a12b3dd116be0cfbde9dcb5d032ca19c4ba
name: gensoft-zstd-1.4.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-zstd-1.4.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-zstd-1.4.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression / speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.

description:
  Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression / speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.


