# filelist

dirname: /opt/gensoft/lib/bpplib/2.4.1/lib64/cmake/bpp-popgen
filetypes: ffff
filenames:
  bpp-popgen-config-version.cmake/bpp-popgen-config.cmake/bpp-popgen-targets-relwithdebinfo.cmake/bpp-popgen-targets.cmake


dirname: /opt/gensoft/lib/bpplib/2.4.1/include/Bpp/PopGen
filetypes: fffdfffffffffffff
filenames:
  AlleleInfo.h/BasicAlleleInfo.h/BiAlleleMonolocusGenotype.h/DataSet/GeneralExceptions.h/LocusInfo.h/MonoAlleleMonolocusGenotype.h/MonolocusGenotype.h/MonolocusGenotypeTools.h/MultiAlleleMonolocusGenotype.h/MultilocusGenotype.h/MultilocusGenotypeStatistics.h/PolymorphismMultiGContainer.h/PolymorphismMultiGContainerTools.h/PolymorphismSequenceContainer.h/PolymorphismSequenceContainerTools.h/SequenceStatistics.h


dirname: /opt/gensoft/lib/bpplib/2.4.1/include/Bpp/Phyl
filetypes: fdffddddddfffffdffdfffffff
filenames:
  AncestralStateReconstruction.h/App/BipartitionList.h/BipartitionTools.h/Distance/Graphics/Io/Likelihood/Mapping/Model/NNISearchable.h/NNITopologySearch.h/Node.h/NodeTemplate.h/OptimizationTools.h/Parsimony/PatternTools.h/PhyloStatistics.h/Simulation/SitePatterns.h/TopologySearch.h/Tree.h/TreeExceptions.h/TreeTemplate.h/TreeTemplateTools.h/TreeTools.h


dirname: /opt/gensoft/lib/bpplib/2.4.1/lib64
filetypes: dffffffffffffffffffffffff
filenames:
  cmake/libbpp-core.a/libbpp-core.so/libbpp-core.so.4/libbpp-core.so.4.1.0/libbpp-phyl-omics.a/libbpp-phyl-omics.so/libbpp-phyl-omics.so.3/libbpp-phyl-omics.so.3.0.0/libbpp-phyl.a/libbpp-phyl.so/libbpp-phyl.so.12/libbpp-phyl.so.12.0.0/libbpp-popgen.a/libbpp-popgen.so/libbpp-popgen.so.8/libbpp-popgen.so.8.0.0/libbpp-seq-omics.a/libbpp-seq-omics.so/libbpp-seq-omics.so.3/libbpp-seq-omics.so.3.0.0/libbpp-seq.a/libbpp-seq.so/libbpp-seq.so.12/libbpp-seq.so.12.0.0


dirname: /opt/gensoft/lib/bpplib/2.4.1/include/Bpp/Numeric
filetypes: ffffffddfdfffffffffddfdfffff
filenames:
  AbstractParameterAliasable.h/AbstractParametrizable.h/AdaptiveKernelDensityEstimation.h/AutoParameter.h/Constraints.h/DataTable.h/Function/Hmm/IntegerTools.h/Matrix/NumConstants.h/NumTools.h/Number.h/Parameter.h/ParameterAliasable.h/ParameterExceptions.h/ParameterList.h/Parametrizable.h/ParametrizableCollection.h/Prob/Random/Range.h/Stat/Table.h/TableExceptions.h/TransformedParameter.h/VectorExceptions.h/VectorTools.h


dirname: /opt/gensoft/lib/bpplib/2.4.1/lib64/cmake/bpp-phyl-omics
filetypes: ffff
filenames:
  bpp-phyl-omics-config-version.cmake/bpp-phyl-omics-config.cmake/bpp-phyl-omics-targets-relwithdebinfo.cmake/bpp-phyl-omics-targets.cmake


dirname: /opt/gensoft/lib/bpplib/2.4.1/lib64/cmake/bpp-seq-omics
filetypes: ffff
filenames:
  bpp-seq-omics-config-version.cmake/bpp-seq-omics-config.cmake/bpp-seq-omics-targets-relwithdebinfo.cmake/bpp-seq-omics-targets.cmake


dirname: /opt/gensoft/lib/bpplib/2.4.1/include/Bpp/Phyl/Model/Codon
filetypes: fffffffffffffffffffffffffffffff
filenames:
  AbstractCodonAAFitnessSubstitutionModel.h/AbstractCodonAARateSubstitutionModel.h/AbstractCodonBGCSubstitutionModel.h/AbstractCodonCpGSubstitutionModel.h/AbstractCodonDistanceSubstitutionModel.h/AbstractCodonFitnessSubstitutionModel.h/AbstractCodonFrequenciesSubstitutionModel.h/AbstractCodonPhaseFrequenciesSubstitutionModel.h/AbstractCodonSubstitutionModel.h/AbstractKroneckerCodonSubstitutionModel.h/CodonAdHocSubstitutionModel.h/CodonDistanceFrequenciesSubstitutionModel.h/CodonDistancePhaseFrequenciesSubstitutionModel.h/CodonDistanceSubstitutionModel.h/CodonSubstitutionModel.h/GY94.h/KCM.h/KroneckerCodonDistanceFrequenciesSubstitutionModel.h/KroneckerCodonDistanceSubstitutionModel.h/MG94.h/SENCA.h/TripletSubstitutionModel.h/YN98.h/YNGP_M.h/YNGP_M1.h/YNGP_M10.h/YNGP_M2.h/YNGP_M3.h/YNGP_M7.h/YNGP_M8.h/YNGP_M9.h


dirname: /opt/gensoft/lib/bpplib/2.4.1/lib64/cmake/bpp-phyl
filetypes: ffff
filenames:
  bpp-phyl-config-version.cmake/bpp-phyl-config.cmake/bpp-phyl-targets-relwithdebinfo.cmake/bpp-phyl-targets.cmake


dirname: /opt/gensoft/lib/bpplib/2.4.1/include/Bpp
filetypes: dfffffdddddddddf
filenames:
  App/BppBoolean.h/BppString.h/BppVector.h/Clonable.h/Exceptions.h/Graph/Graphics/Io/Numeric/Phyl/PopGen/Seq/Text/Utils/Version.h


dirname: /opt/gensoft/lib/bpplib/2.4.1/include/Bpp/Seq/Io
filetypes: fffffffffffffffffffffdffffffffffff
filenames:
  AbstractIAlignment.h/AbstractISequence.h/AbstractOAlignment.h/AbstractOSequence.h/BppOAlignmentReaderFormat.h/BppOAlignmentWriterFormat.h/BppOAlphabetIndex1Format.h/BppOAlphabetIndex2Format.h/BppOSequenceReaderFormat.h/BppOSequenceStreamReaderFormat.h/BppOSequenceWriterFormat.h/Clustal.h/Dcse.h/Fasta.h/Fastq.h/GenBank.h/ISequence.h/ISequenceStream.h/IoSequence.h/IoSequenceFactory.h/IoSequenceStream.h/Maf/Mase.h/MaseTools.h/NexusIoSequence.h/NexusTools.h/OSequence.h/OSequenceStream.h/PhredPhd.h/PhredPoly.h/Phylip.h/SequenceFileIndex.h/Stockholm.h/StreamSequenceIterator.h


dirname: /opt/gensoft/lib/bpplib/3/lib64/cmake/bpp-phyl-omics3
filetypes: ffff
filenames:
  bpp-phyl-omics3-config-version.cmake/bpp-phyl-omics3-config.cmake/bpp-phyl-omics3-targets-relwithdebinfo.cmake/bpp-phyl-omics3-targets.cmake


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Model/Codon
filetypes: fffffffffffffffffffffffffffffffffffff
filenames:
  AbstractCodonAAFitnessSubstitutionModel.h/AbstractCodonAARateSubstitutionModel.h/AbstractCodonBGCSubstitutionModel.h/AbstractCodonClusterAASubstitutionModel.h/AbstractCodonCpGSubstitutionModel.h/AbstractCodonDistanceSubstitutionModel.h/AbstractCodonFitnessSubstitutionModel.h/AbstractCodonFrequenciesSubstitutionModel.h/AbstractCodonPhaseFrequenciesSubstitutionModel.h/AbstractCodonSubstitutionModel.h/AbstractDFPSubstitutionModel.h/AbstractKroneckerCodonSubstitutionModel.h/CodonAdHocSubstitutionModel.h/CodonDistanceFrequenciesSubstitutionModel.h/CodonDistancePhaseFrequenciesSubstitutionModel.h/CodonDistanceSubstitutionModel.h/CodonSameAARateSubstitutionModel.h/CodonSubstitutionModel.h/DFP07.h/DFPDistanceFrequenciesSubstitutionModel.h/GY94.h/KCM.h/KroneckerCodonDistanceFrequenciesSubstitutionModel.h/KroneckerCodonDistanceSubstitutionModel.h/MG94.h/RELAX.h/SENCA.h/TripletSubstitutionModel.h/YN98.h/YNGP_M.h/YNGP_M1.h/YNGP_M10.h/YNGP_M2.h/YNGP_M3.h/YNGP_M7.h/YNGP_M8.h/YNGP_M9.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl
filetypes: fddddddddfdfffdfd
filenames:
  AncestralStateReconstruction.h/App/Distance/Graphics/Io/Legacy/Likelihood/Mapping/Model/OptimizationTools.h/Parsimony/PatternTools.h/PhyloStatistics.h/PseudoNewtonOptimizer.h/Simulation/SitePatterns.h/Tree


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Seq
filetypes: dddffdfffffddfdffffffffffffffffffffff
filenames:
  Alphabet/AlphabetIndex/App/CodonSiteTools.h/Commentable.h/Container/CoreSequence.h/CoreSite.h/CoreSymbolList.h/DNAToRNA.h/DistanceMatrix.h/Feature/GeneticCode/IntSymbolList.h/Io/NucleicAcidsReplication.h/ProbabilisticSequence.h/ProbabilisticSite.h/ProbabilisticSymbolList.h/Sequence.h/SequenceExceptions.h/SequenceIterator.h/SequencePositionIterators.h/SequenceTools.h/SequenceWalker.h/SequenceWithAnnotation.h/SequenceWithAnnotationTools.h/SequenceWithQuality.h/SequenceWithQualityTools.h/Site.h/SiteExceptions.h/SiteIterator.h/SiteTools.h/StringSequenceTools.h/SymbolList.h/SymbolListTools.h/Transliterator.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Seq/Container
filetypes: ffffffffffffffffffffff
filenames:
  AbstractSequenceContainer.h/AlignedSequenceContainer.h/AlignmentData.h/CompressedVectorSiteContainer.h/MappedNamedContainer.h/NamedContainer.h/PositionedContainer.h/PositionedNamedContainer.h/SequenceContainer.h/SequenceContainerExceptions.h/SequenceContainerIterator.h/SequenceContainerTools.h/SequenceData.h/SequencedValuesContainer.h/SiteContainer.h/SiteContainerExceptions.h/SiteContainerIterator.h/SiteContainerTools.h/VectorMappedContainer.h/VectorPositionedContainer.h/VectorSequenceContainer.h/VectorSiteContainer.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Mapping/PhyloMappings
filetypes: ffff
filenames:
  AbstractSinglePhyloSubstitutionMapping.h/OneProcessSequenceSubstitutionMapping.h/PhyloSubstitutionMapping.h/SingleProcessSubstitutionMapping.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Likelihood/PhyloLikelihoods
filetypes: fffffffffffffffffffffffff
filenames:
  AbstractPhyloLikelihood.h/AlignedPhyloLikelihood.h/AlignedPhyloLikelihoodAutoCorrelation.h/AlignedPhyloLikelihoodHmm.h/AlignedPhyloLikelihoodMixture.h/AlignedPhyloLikelihoodProduct.h/AlignedPhyloLikelihoodSet.h/AutoCorrelationProcessPhyloLikelihood.h/HmmLikelihoodComputation.h/HmmLikelihood_DF.h/HmmPhyloAlphabet.h/HmmPhyloEmissionProbabilities.h/HmmProcessPhyloLikelihood.h/MixtureProcessPhyloLikelihood.h/MultiProcessSequencePhyloLikelihood.h/OnABranchPhyloLikelihood.h/OneProcessSequencePhyloLikelihood.h/PartitionProcessPhyloLikelihood.h/PhyloLikelihood.h/PhyloLikelihoodContainer.h/PhyloLikelihoodFormula.h/PhyloLikelihoodSet.h/SequencePhyloLikelihood.h/SingleDataPhyloLikelihood.h/SingleProcessPhyloLikelihood.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Seq/AlphabetIndex
filetypes: fffffffffffffffffffffffffffff
filenames:
  AAChargeIndex.h/AAChenGuHuangHydrophobicityIndex.h/AAChouFasmanAHelixIndex.h/AAChouFasmanBSheetIndex.h/AAChouFasmanTurnIndex.h/AAIndex1Entry.h/AAIndex2Entry.h/AAMassIndex.h/AASEA1030Index.h/AASEAInf10Index.h/AASEASup30Index.h/AASurfaceIndex.h/AAVolumeIndex.h/AlphabetIndex1.h/AlphabetIndex2.h/BLOSUM50.h/CodonFromProteicAlphabetIndex1.h/CodonFromProteicAlphabetIndex2.h/DefaultNucleotideScore.h/GranthamAAChemicalDistance.h/GranthamAAPolarityIndex.h/GranthamAAVolumeIndex.h/KD_AAHydropathyIndex.h/KleinAANetChargeIndex.h/MiyataAAChemicalDistance.h/SimpleIndexDistance.h/SimpleScore.h/UserAlphabetIndex1.h/UserAlphabetIndex2.h


dirname: /opt/gensoft/lib/bpplib/3/lib64/cmake/bpp-popgen3
filetypes: ffff
filenames:
  bpp-popgen3-config-version.cmake/bpp-popgen3-config.cmake/bpp-popgen3-targets-relwithdebinfo.cmake/bpp-popgen3-targets.cmake


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Seq/Io
filetypes: fffffffffffffffffffffffdffffffffffffff
filenames:
  AbstractIAlignment.h/AbstractISequence.h/AbstractOAlignment.h/AbstractOSequence.h/BppOAlignmentReaderFormat.h/BppOAlignmentWriterFormat.h/BppOAlphabetIndex1Format.h/BppOAlphabetIndex2Format.h/BppOSequenceReaderFormat.h/BppOSequenceStreamReaderFormat.h/BppOSequenceWriterFormat.h/Clustal.h/Dcse.h/Fasta.h/Fastq.h/GenBank.h/ISequence.h/ISequenceStream.h/IoDistanceMatrix.h/IoDistanceMatrixFactory.h/IoSequence.h/IoSequenceFactory.h/IoSequenceStream.h/Maf/Mase.h/MaseTools.h/NexusIoSequence.h/NexusTools.h/OSequence.h/OSequenceStream.h/Pasta.h/PhredPhd.h/PhredPoly.h/Phylip.h/PhylipDistanceMatrixFormat.h/SequenceFileIndex.h/Stockholm.h/StreamSequenceIterator.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Likelihood/DataFlow
filetypes: fffffffffffffffffffffff
filenames:
  BackwardLikelihoodTree.h/CollectionNodes.h/DataFlow.h/DataFlowCWise.h/DataFlowCWiseComputing.h/DataFlowNumeric.h/Definitions.h/DiscreteDistribution.h/ExtendedFloat.h/ExtendedFloatEigen.h/ExtendedFloatEigenTools.h/ForwardLikelihoodTree.h/FrequencySet.h/LikelihoodCalculation.h/LikelihoodCalculationOnABranch.h/LikelihoodCalculationSingleProcess.h/Model.h/Parameter.h/Parametrizable.h/ProcessTree.h/Sequence_DF.h/Simplex_DF.h/TransitionMatrix.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Io
filetypes: ffffffffffffffffff
filenames:
  BppOBranchModelFormat.h/BppOFrequencySetFormat.h/BppOMultiTreeReaderFormat.h/BppOMultiTreeWriterFormat.h/BppORateDistributionFormat.h/BppOSubstitutionModelFormat.h/BppOTransitionModelFormat.h/BppOTreeReaderFormat.h/BppOTreeWriterFormat.h/IoFrequencySet.h/IoFrequencySetFactory.h/IoSubstitutionModel.h/IoSubstitutionModelFactory.h/IoTree.h/IoTreeFactory.h/Newick.h/NexusIoTree.h/Nhx.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Legacy
filetypes: fdddddfddf
filenames:
  AncestralStateReconstruction.h/App/Io/Likelihood/Mapping/Model/OptimizationTools.h/Simulation/Tree/TreeIterator.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Tree
filetypes: ffffffffffffffffff
filenames:
  BipartitionList.h/BipartitionTools.h/NNISearchable.h/Node.h/NodeTemplate.h/PhyloBranch.h/PhyloBranchParam.h/PhyloDAG.h/PhyloNode.h/PhyloTree.h/PhyloTreeExceptions.h/PhyloTreeTools.h/TopologySearch.h/Tree.h/TreeExceptions.h/TreeTemplate.h/TreeTemplateTools.h/TreeTools.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Legacy/Mapping
filetypes: fffffff
filenames:
  Mapping.h/ProbabilisticRewardMapping.h/ProbabilisticSubstitutionMapping.h/RewardMapping.h/RewardMappingTools.h/SubstitutionMapping.h/SubstitutionMappingTools.h


dirname: /opt/gensoft/lib/bpplib/3/lib64/cmake/bpp-seq-omics3
filetypes: ffff
filenames:
  bpp-seq-omics3-config-version.cmake/bpp-seq-omics3-config.cmake/bpp-seq-omics3-targets-relwithdebinfo.cmake/bpp-seq-omics3-targets.cmake


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Mapping
filetypes: fffffffffffdfffffffffffff
filenames:
  BranchedModelSet.h/CategorySubstitutionRegister.h/DecompositionMethods.h/DecompositionReward.h/DecompositionSubstitutionCount.h/LaplaceSubstitutionCount.h/Mapping.h/NaiveSubstitutionCount.h/OneJumpSubstitutionCount.h/PhyloBranchMapping.h/PhyloBranchReward.h/PhyloMappings/ProbabilisticRewardMapping.h/ProbabilisticSubstitutionMapping.h/Reward.h/RewardMapping.h/RewardMappingTools.h/StochasticMapping.h/SubstitutionCount.h/SubstitutionDistance.h/SubstitutionMapping.h/SubstitutionMappingTools.h/SubstitutionRegister.h/UniformizationSubstitutionCount.h/WeightedSubstitutionCount.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Numeric/Function
filetypes: fffffffffffffffdffffffff
filenames:
  AbstractOptimizer.h/BfgsMultiDimensions.h/BrentOneDimension.h/ConjugateGradientMultiDimensions.h/DirectionFunction.h/DownhillSimplexMethod.h/FivePointsNumericalDerivative.h/FunctionTools.h/Functions.h/GoldenSectionSearch.h/MetaOptimizer.h/NewtonBacktrackOneDimension.h/NewtonOneDimension.h/NumericalDerivative.h/OneDimensionOptimizationTools.h/Operators/OptimizationStopCondition.h/Optimizer.h/PowellMultiDimensions.h/ReparametrizationFunctionWrapper.h/SimpleMultiDimensions.h/SimpleNewtonMultiDimensions.h/ThreePointsNumericalDerivative.h/TwoPointsNumericalDerivative.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Model/Nucleotide
filetypes: fffffffffffffff
filenames:
  F81.h/F84.h/GTR.h/HKY85.h/JCnuc.h/K80.h/L95.h/NucleotideSubstitutionModel.h/RN95.h/RN95s.h/SSR.h/T92.h/TN93.h/YpR.h/gBGC.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Likelihood
filetypes: ffffdffffffffffffdffffffff
filenames:
  AbstractAutonomousSubstitutionProcess.h/AbstractSubstitutionProcess.h/AutoCorrelationSequenceEvolution.h/AutonomousSubstitutionProcess.h/DataFlow/HmmEmissionProbabilities_Eigen.h/HmmProcessAlphabet.h/HmmSequenceEvolution.h/MarginalAncestralReconstruction.h/MixtureSequenceEvolution.h/ModelPath.h/ModelScenario.h/MultiProcessSequenceEvolution.h/NonHomogeneousSubstitutionProcess.h/OneProcessSequenceEvolution.h/ParametrizablePhyloTree.h/PartitionSequenceEvolution.h/PhyloLikelihoods/ProcessComputationTree.h/RateAcrossSitesSubstitutionProcess.h/SequenceEvolution.h/SimpleSubstitutionProcess.h/SitePartition.h/SubstitutionProcess.h/SubstitutionProcessCollection.h/SubstitutionProcessCollectionMember.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Seq/GeneticCode
filetypes: fffffffff
filenames:
  AscidianMitochondrialGeneticCode.h/CiliateNuclearGeneticCode.h/EchinodermMitochondrialGeneticCode.h/GeneticCode.h/InvertebrateMitochondrialGeneticCode.h/MoldMitochondrialGeneticCode.h/StandardGeneticCode.h/VertebrateMitochondrialGeneticCode.h/YeastMitochondrialGeneticCode.h


dirname: /opt/gensoft/lib/bpplib/3/lib64/cmake/bpp-core3
filetypes: ffff
filenames:
  bpp-core3-config-version.cmake/bpp-core3-config.cmake/bpp-core3-targets-relwithdebinfo.cmake/bpp-core3-targets.cmake


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Legacy/Likelihood
filetypes: ffffffffffffffffffffffffffff
filenames:
  AbstractDiscreteRatesAcrossSitesTreeLikelihood.h/AbstractHomogeneousTreeLikelihood.h/AbstractNonHomogeneousTreeLikelihood.h/AbstractTreeLikelihood.h/AbstractTreeLikelihoodData.h/DRASDRTreeLikelihoodData.h/DRASRTreeLikelihoodData.h/DRHomogeneousMixedTreeLikelihood.h/DRHomogeneousTreeLikelihood.h/DRNonHomogeneousTreeLikelihood.h/DRTreeLikelihood.h/DRTreeLikelihoodTools.h/DiscreteRatesAcrossSitesTreeLikelihood.h/GlobalClockTreeLikelihoodFunctionWrapper.h/HomogeneousTreeLikelihood.h/MarginalAncestralStateReconstruction.h/NNIHomogeneousTreeLikelihood.h/NonHomogeneousTreeLikelihood.h/PairedSiteLikelihoods.h/RASTools.h/RHomogeneousMixedTreeLikelihood.h/RHomogeneousTreeLikelihood.h/RNonHomogeneousMixedTreeLikelihood.h/RNonHomogeneousTreeLikelihood.h/SitePartitionTreeLikelihood.h/TreeLikelihood.h/TreeLikelihoodData.h/TreeLikelihoodTools.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Seq/Alphabet
filetypes: fffffffffffffffffffffff
filenames:
  AbstractAlphabet.h/AllelicAlphabet.h/Alphabet.h/AlphabetExceptions.h/AlphabetNumericState.h/AlphabetState.h/AlphabetTools.h/BinaryAlphabet.h/CaseMaskedAlphabet.h/CodonAlphabet.h/DNA.h/DefaultAlphabet.h/IntegerAlphabet.h/LetterAlphabet.h/LexicalAlphabet.h/NucleicAlphabet.h/NucleicAlphabetState.h/NumericAlphabet.h/ProteicAlphabet.h/ProteicAlphabetState.h/RNA.h/RNY.h/WordAlphabet.h


dirname: /opt/gensoft/lib/bpplib/3/lib64
filetypes: dffffffffffffffffff
filenames:
  cmake/libbpp-core3.so/libbpp-core3.so.1/libbpp-core3.so.1.0.0/libbpp-phyl-omics3.so/libbpp-phyl-omics3.so.1/libbpp-phyl-omics3.so.1.0.0/libbpp-phyl3.so/libbpp-phyl3.so.1/libbpp-phyl3.so.1.0.0/libbpp-popgen3.so/libbpp-popgen3.so.1/libbpp-popgen3.so.1.0.0/libbpp-seq-omics3.so/libbpp-seq-omics3.so.1/libbpp-seq-omics3.so.1.0.0/libbpp-seq3.so/libbpp-seq3.so.1/libbpp-seq3.so.1.0.0


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Simulation
filetypes: fffffffffff
filenames:
  DetailedSiteSimulator.h/EvolutionSequenceSimulator.h/GivenDataSubstitutionProcessSequenceSimulator.h/GivenDataSubstitutionProcessSiteSimulator.h/MutationProcess.h/SequenceSimulationTools.h/SequenceSimulator.h/SimpleSubstitutionProcessSequenceSimulator.h/SimpleSubstitutionProcessSiteSimulator.h/SiteSimulator.h/SubstitutionProcessSequenceSimulator.h


dirname: /opt/gensoft/lib/bpplib/3/lib64/cmake/bpp-phyl3
filetypes: ffff
filenames:
  bpp-phyl3-config-version.cmake/bpp-phyl3-config.cmake/bpp-phyl3-targets-relwithdebinfo.cmake/bpp-phyl3-targets.cmake


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Seq/Io/Maf
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  AbstractDistanceEstimationMafIterator.h/AbstractIterationListener.h/AbstractMafIterator.h/AbstractPhylogenyReconstructionMafIterator.h/AlignmentFilterMafIterator.h/BlockLengthMafIterator.h/BlockMergerMafIterator.h/BlockSizeMafIterator.h/ChromosomeMafIterator.h/ChromosomeRenamingMafIterator.h/ConcatenateMafIterator.h/CoordinateTranslatorMafIterator.h/CoordinatesOutputMafIterator.h/CountClustersMafStatistics.h/CountDistanceEstimationMafIterator.h/DistanceBasedPhylogenyReconstructionMafIterator.h/DuplicateFilterMafIterator.h/EntropyFilterMafIterator.h/FeatureExtractorMafIterator.h/FeatureFilterMafIterator.h/FilterTreeMafIterator.h/FullGapFilterMafIterator.h/IterationListener.h/MafBlock.h/MafIterator.h/MafParser.h/MafSequence.h/MafStatistics.h/MaskFilterMafIterator.h/MaximumLikelihoodDistanceEstimationMafIterator.h/MaximumLikelihoodModelFitMafStatistics.h/MsmcOutputMafIterator.h/OrderFilterMafIterator.h/OrphanSequenceFilterMafIterator.h/OutputAlignmentMafIterator.h/OutputDistanceMatrixMafIterator.h/OutputMafIterator.h/OutputTreeMafIterator.h/PlinkOutputMafIterator.h/QualityFilterMafIterator.h/RemoveEmptySequencesMafIterator.h/SequenceFilterMafIterator.h/SequenceLDhotOutputMafIterator.h/SequenceStatisticsMafIterator.h/SequenceStreamToMafIterator.h/TableOutputMafIterator.h/TreeManipulationMafIterators.h/VcfOutputMafIterator.h/WindowSplitMafIterator.h


dirname: /opt/gensoft/lib/bpplib/3/lib64/cmake/bpp-seq3
filetypes: ffff
filenames:
  bpp-seq3-config-version.cmake/bpp-seq3-config.cmake/bpp-seq3-targets-relwithdebinfo.cmake/bpp-seq3-targets.cmake


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Model
filetypes: ffffffffffdffdfffffffffffdfffdfdffffffff
filenames:
  AbstractBiblioMixedTransitionModel.h/AbstractBiblioSubstitutionModel.h/AbstractFromSubstitutionModelTransitionModel.h/AbstractKroneckerWordSubstitutionModel.h/AbstractMixedTransitionModel.h/AbstractSubstitutionModel.h/AbstractWordSubstitutionModel.h/AbstractWrappedModel.h/AnonymousSubstitutionModel.h/BinarySubstitutionModel.h/Codon/D1WalkSubstitutionModel.h/EquiprobableSubstitutionModel.h/FrequencySet/FromMixtureSubstitutionModel.h/G2001.h/InMixedSubstitutionModel.h/KroneckerWordSubstitutionModel.h/MarkovModulatedSubstitutionModel.h/MixedTransitionModel.h/MixtureOfASubstitutionModel.h/MixtureOfATransitionModel.h/MixtureOfSubstitutionModels.h/MixtureOfTransitionModels.h/MultinomialFromTransitionModel.h/Nucleotide/OneChangeRegisterTransitionModel.h/OneChangeTransitionModel.h/POMO.h/Protein/RE08.h/RateDistribution/RegisterRatesSubstitutionModel.h/StateMap.h/SubstitutionModel.h/TS98.h/TransitionFromTransitionModel.h/TwoParameterBinarySubstitutionModel.h/WordSubstitutionModel.h/WrappedModel.h


dirname: /opt/gensoft/lib/bpplib/3/include/Bpp/Phyl/Model/FrequencySet
filetypes: ffffff
filenames:
  CodonFrequencySet.h/FrequencySet.h/MvaFrequencySet.h/NucleotideFrequencySet.h/ProteinFrequencySet.h/WordFrequencySet.h


dirname: /opt/gensoft/exe/bppsuite/2.2.0/share/man/man1
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