# packages

pkgId: d8370df6ed70287404eb1686279ac1f9bc1960ac0d963d132da29bc4d9005c05
name: gensoft-3seq-1.7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: repack
rpm_sourcerpm: gensoft-3seq-1.7-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-3seq-1.7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a command-line program that reads in a nucleotide sequence file, in phylip or aligned fasta format, and tests all sequence triplets in the file for a mosaic recombination signal indicating that one of the three sequences (the child) is a recombinant of the other two (the parents).

description:
  a command-line program that reads in a nucleotide sequence file, in phylip or aligned fasta format, and tests all sequence triplets in the file for a mosaic recombination signal indicating that one of the three sequences (the child) is a recombinant of the other two (the parents).


pkgId: 1db7f402762c4f8569d8553c7e1e29bb65bbaa84d0e65a24c285940db029e95b
name: gensoft-AFNI-21.1.08
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: repack
rpm_sourcerpm: gensoft-AFNI-21.1.08-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-AFNI-21.1.08-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  AFNI (Analysis of Functional NeuroImages) is a leading software suite of C, Python, R programs and shell scripts primarily developed for the analysis and display of multiple MRI modalities - anatomical, functional MRI (FMRI) and diffusion weighted (DW) data.

description:
  AFNI (Analysis of Functional NeuroImages) is a leading software suite of C, Python, R programs and shell scripts primarily developed for the analysis and display of multiple MRI modalities - anatomical, functional MRI (FMRI) and diffusion weighted (DW) data.


pkgId: 59f7a0d39c1779dc42cddf611c465acfc291123e098d4cacb5949341a71cc45d
name: gensoft-ALE-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: repack
rpm_sourcerpm: gensoft-ALE-1.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ALE-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees.

description:
  Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees.


pkgId: a44c3b1215ff4b24feacc5cf4266429af008c20df92989a63eeabccf83665f20
name: gensoft-APS-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-APS-1.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-APS-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Automatic Placenta Segmentation, a neural network model for automatic segmentation of the placenta embedded in whole-uterus Blood Oxygen Level Dependent (BOLD) MRI.

description:
  Automatic Placenta Segmentation, a neural network model for automatic segmentation of the placenta embedded in whole-uterus Blood Oxygen Level Dependent (BOLD) MRI.


pkgId: bdd53c5e8bc38351845686dcfe24d61b515dc636cc93a68b1bd0afc43e5fa473
name: gensoft-ART-2016-06-05
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ART-2016-06-05
rpm_sourcerpm: gensoft-ART-2016-06-05-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ART-2016-06-05-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms. Illuminas Solexa, Roches 454 and Applied Biosystems SOLiD

description:
  ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms. Illuminas Solexa, Roches 454 and Applied Biosystems SOLiD


pkgId: 2dd4a5061cbf9924db4e8740a7b7b4f6f6a6f240116e9b2dfb185a6253c6280d
name: gensoft-ASCIIGenome-1.19.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: gcc
rpm_sourcerpm: gensoft-ASCIIGenome-1.19.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ASCIIGenome-1.19.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a command-line genome browser running from terminal window and solely based on ASCII characters. Since ASCIIGenome does not require a graphical interface it is particularly useful for quickly visualizing genomic data on remote servers

description:
  a command-line genome browser running from terminal window and solely based on ASCII characters. Since ASCIIGenome does not require a graphical interface it is particularly useful for quickly visualizing genomic data on remote servers


pkgId: e66e51775819c2fa3164cd5002650d94a503a6088020e6b2871c515e042c3c09
name: gensoft-ASSU-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: amrfinder
rpm_sourcerpm: gensoft-ASSU-1.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ASSU-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ASSU (ASSembling SSU) is a command line tool written in Bash to carry out the reference-guided assembly of small subunit (SSU) 16S ribosomal ribonucleic acid (rRNA) using short high-throughput sequencing (HTS) reads derived from whole genome sequencing of bacteria or archaea strains.

description:
  ASSU (ASSembling SSU) is a command line tool written in Bash to carry out the reference-guided assembly of small subunit (SSU) 16S ribosomal ribonucleic acid (rRNA) using short high-throughput sequencing (HTS) reads derived from whole genome sequencing of bacteria or archaea strains.


pkgId: 1bdd5539403495f49756b3ddc6eb5984f9e8d5cb8c77c97521fd5afbd66afa95
name: gensoft-ASTER-1.19
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-ASTER-1.19-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ASTER-1.19-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Accurate Species Tree EstimatoR - a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)

description:
  Accurate Species Tree EstimatoR - a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)


pkgId: 6c51bb84fdfdd85e24750db4788c83628ce0af5dfb686a2090924beedd22e597
name: gensoft-AdmixTools-6.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-AdmixTools-6.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-AdmixTools-6.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software package that supports formal tests of whether admixture occurred, and makes it possible to infer admixture proportions and dates.

description:
  a software package that supports formal tests of whether admixture occurred, and makes it possible to infer admixture proportions and dates.


pkgId: b975f3992afe33e6b472b0bf470b3428d830cea5114f97ecd632664c0d65a574
name: gensoft-AlienDiscover-0.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0c47002539ff
rpm_sourcerpm: gensoft-AlienDiscover-0.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-AlienDiscover-0.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a command line program written in Java that quickly removes alien (i.e. undesirable) high-throughtput sequencing (HTS) reads from FASTQ files.

description:
  a command line program written in Java that quickly removes alien (i.e. undesirable) high-throughtput sequencing (HTS) reads from FASTQ files.


pkgId: f90812bae17f4a2c3735dc9623d81c7533ef8401cc0ad8ab25ebc7432d968fcd
name: gensoft-AlienTrimmer-0.4.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: amrfinder
rpm_sourcerpm: gensoft-AlienTrimmer-0.4.0-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-AlienTrimmer-0.4.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  AlienTrimmer is a software that allows detecting and removing contaminant sequences in both ends of NGSread sequences FASTA/FASTQ formated.

description:
  AlienTrimmer is a software that allows detecting and removing contaminant sequences in both ends of NGSread sequences FASTA/FASTQ formated.


pkgId: 186e6216000f65f8d510f8911c098d7ff647d8c42c4f29dd1c39798c26877490
name: gensoft-AmpliconNoise-1.29
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 121403ba2ee6
rpm_sourcerpm: gensoft-AmpliconNoise-1.29-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-AmpliconNoise-1.29-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a collection of programs for the removal of noise from 454 sequenced PCR amplicons. It involves two steps the removal of noise from the sequencing itself and the removal of PCR point errors. This project also includes the Perseus algorithm for chimera removal.

description:
  a collection of programs for the removal of noise from 454 sequenced PCR amplicons. It involves two steps the removal of noise from the sequencing itself and the removal of PCR point errors. This project also includes the Perseus algorithm for chimera removal.


pkgId: 6d9dd9ed37a8caf4f8e3b4c627f750dee85db0e13ca095c66e2e31d77503b2cf
name: gensoft-AreTomo3-2.0.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-AreTomo3-2.0.6-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-AreTomo3-2.0.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  AreTomo3 is a multi-GPU accelerated software package that enables real-time fully automated reconstruction of cryoET tomograms in parallel with cryoET data collection.

description:
  AreTomo3 is a multi-GPU accelerated software package that enables real-time fully automated reconstruction of cryoET tomograms in parallel with cryoET data collection.


pkgId: f1a617b6b48d2be6861cab8a3415df03da3fc9d6f39c40f37a65a36893eb92c3
name: gensoft-BART-v1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 4ae69e6eaed3
rpm_sourcerpm: gensoft-BART-v1.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-BART-v1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  BART (Binding Analysis for Regulation of Transcription) is a bioinformatics tool for predicting functional transcription factors (TFs) that bind at genomic cis-regulatory regions to regulate gene expression in the human or mouse genomes, given a query gene set or a ChIP-seq dataset as input. BART leverages 3,485 human TF binding profiles and 3,055 mouse TF binding profiles from the public domain (collected in Cistrome Data Browser) to make the prediction.

description:
  BART (Binding Analysis for Regulation of Transcription) is a bioinformatics tool for predicting functional transcription factors (TFs) that bind at genomic cis-regulatory regions to regulate gene expression in the human or mouse genomes, given a query gene set or a ChIP-seq dataset as input. BART leverages 3,485 human TF binding profiles and 3,055 mouse TF binding profiles from the public domain (collected in Cistrome Data Browser) to make the prediction.


pkgId: 5dd651a8d126cbb1078b6c32fc45ff348ada51e7572bcf73398e9fca440f1e46
name: gensoft-BLAS-3.8.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-BLAS-3.8.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-BLAS-3.8.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.

description:
  The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.


pkgId: ebfe65e3f637d090647ef6366745744fa0feb7a5db8c84f4effebc3a7940b17a
name: gensoft-BRAKER-2.1.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: BRAKER-2.1.6
rpm_sourcerpm: gensoft-BRAKER-2.1.6-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-BRAKER-2.1.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

description:
  a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes


pkgId: f2bc18ce30351e7dc0f377eb44005385e1f78900458c17e42b0d9e6b1d200e43
name: gensoft-BTyper-3.1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: BTyper-3.1.1
rpm_sourcerpm: gensoft-BTyper-3.1.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-BTyper-3.1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  in silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data

description:
  in silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data


pkgId: 16fadee67cf0d0304d687ff8ad9daa7558e7abd1729bd8036d0c6c138c1fe10e
name: gensoft-BamM-1.7.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: BamM-1.7.3
rpm_sourcerpm: gensoft-BamM-1.7.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-BamM-1.7.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  BamM is a c library, wrapped in python, that parses BAM files. The code is intended to provide a faster, more stable interface to parsing BAM files than PySam, but does not implement all/any of PySams features.

description:
  BamM is a c library, wrapped in python, that parses BAM files. The code is intended to provide a faster, more stable interface to parsing BAM files than PySam, but does not implement all/any of PySams features.


pkgId: 99104d10fcf07f6cc15e3ccf9a20335a1129165b36ac435e5e2649ff250f1361
name: gensoft-BayesTraits-4.1.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-BayesTraits-4.1.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-BayesTraits-4.1.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  BayesTraits is a computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available.

description:
  BayesTraits is a computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available.


pkgId: a4133a07557ba746aaf2cec0c4620fe66395242104ea04152b44886ec382f0bf
name: gensoft-BinSanity-0.3.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 6d678f7e3e57
rpm_sourcerpm: gensoft-BinSanity-0.3.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-BinSanity-0.3.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation

description:
  Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation


pkgId: 52009e796dca301d41b574b4d3ad4fcbe13df8f4f611621b54dfaeda5e9ce5e9
name: gensoft-BioEM-2.1.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: BioEM
rpm_sourcerpm: gensoft-BioEM-2.1.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-BioEM-2.1.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the characterization of structural models with respect to individual electron microscopy images.

description:
  GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the characterization of structural models with respect to individual electron microscopy images.


pkgId: 37d5a0d24285a444d52aa5628a17af31db6eb3a4631b104ed7e6cb4098472414
name: gensoft-BioPathNet-0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-BioPathNet-0.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-BioPathNet-0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  BioPathNet is a graph neural network framework, adapted from NBFNet, designed to reason on biomedical knowledge graphs.

description:
  BioPathNet is a graph neural network framework, adapted from NBFNet, designed to reason on biomedical knowledge graphs.


pkgId: 3f0dd66dce5cf0abc49742c1f3634f96a7300b0f114311c2c096be5ac12d8997
name: gensoft-Bracken-2.6.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: Bracken-2.6.2
rpm_sourcerpm: gensoft-Bracken-2.6.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Bracken-2.6.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample

description:
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample


pkgId: c7ef83c08372c9365f7d965dc8dcbb12ceee8d2cedd4047cc739e3bb930370fb
name: gensoft-CAFE5-5.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-CAFE5-5.1.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-CAFE5-5.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  analyze changes in gene family size in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences.

description:
  analyze changes in gene family size in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences.


pkgId: fc4828021949725643ad3769d00f57b893be324c8cb364baf3be4a75305c4e19
name: gensoft-CAMSA-1.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2c031c51066e
rpm_sourcerpm: gensoft-CAMSA-1.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-CAMSA-1.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library under the MIT license.

description:
  a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library under the MIT license.


pkgId: 051e6d841026f750e9bc0bf6d12ea53cfa67a53bcba26325eac84e0a4746d95d
name: gensoft-CAT_pack-6.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-CAT_pack-6.0.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-CAT_pack-6.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CAT/BAT/RAT - tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

description:
  CAT/BAT/RAT - tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes


pkgId: 107fdb98262f4e5ae56c673cfaba2ccf696b4bf5ee4ffc393518bd6fd7521019
name: gensoft-CEAS-1.0.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: CEAS-1.0.2
rpm_sourcerpm: gensoft-CEAS-1.0.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-CEAS-1.0.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CEAS (Cis-regulatory Element Annotation System), provides statistics on ChIP enrichment at important genome features such as specific chromosome, promoters, gene bodies, or exons, and infers genes most likely to be regulated by a binding factor

description:
  CEAS (Cis-regulatory Element Annotation System), provides statistics on ChIP enrichment at important genome features such as specific chromosome, promoters, gene bodies, or exons, and infers genes most likely to be regulated by a binding factor


pkgId: ff5833a7b714dede80b680e671aeb60aaec2755a1b00b6e852855578914b33ce
name: gensoft-CEGMA-v2.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3463bfe24982
rpm_sourcerpm: gensoft-CEGMA-v2.5-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-CEGMA-v2.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  (Core Eukaryotic Genes Mapping Approach) is a pipeline for building a set of high reliable set of gene annotations in virtually any eukaryotic genome. The strategy relies on a simple fact some highly conserved proteins are encoded in essentially all eukaryotic genomes. We use the KOGs database to build a set of these highly conserved ubiquitous proteins. We define a set of 458 core proteins, and the protocol, CEGMA, to find orthologs of the core proteins in new genomes and to determine their exon-intron structures.

description:
  (Core Eukaryotic Genes Mapping Approach) is a pipeline for building a set of high reliable set of gene annotations in virtually any eukaryotic genome. The strategy relies on a simple fact some highly conserved proteins are encoded in essentially all eukaryotic genomes. We use the KOGs database to build a set of these highly conserved ubiquitous proteins. We define a set of 458 core proteins, and the protocol, CEGMA, to find orthologs of the core proteins in new genomes and to determine their exon-intron structures.


pkgId: a7bdf3f645c87c55a83bfe03cc0ea3e586c5a9cce6278c92fffa03170757327a
name: gensoft-CGAL-5.0.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d37c193b0f41
rpm_sourcerpm: gensoft-CGAL-5.0.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-CGAL-5.0.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CGAL is a software project that provides easy access to efficient and reliable geometric algorithms in the form of a C++ library

description:
  CGAL is a software project that provides easy access to efficient and reliable geometric algorithms in the form of a C++ library


pkgId: 710fade05f4cee225b2a4544ce660be70d5e67fcf8e9dd360a1a6d4999d0bbb4
name: gensoft-CLCGenomicsWorkbench-20.0.4
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: CLCGenomicsWorkbench-20.0.4
rpm_sourcerpm: gensoft-CLCGenomicsWorkbench-20.0.4-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-CLCGenomicsWorkbench-20.0.4-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Graphic interface to launch the proprietary NGS data dedicated programs (read trimming, mapping, de novo assembly, SNP calling...)

description:
  Graphic interface to launch the proprietary NGS data dedicated programs (read trimming, mapping, de novo assembly, SNP calling...)


pkgId: cf0c346061374a64cadd00be5312d9f59736aad3e76271fa327137a413c8d99a
name: gensoft-CLI11-2.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-CLI11-2.3.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-CLI11-2.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.

description:
  a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.


pkgId: a2fe016b9dea8c89663c7a86dd627de06fec31f83a30eea222297f69755a7322
name: gensoft-CONCOCT-1.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: CONCOCT-1.1.0
rpm_sourcerpm: gensoft-CONCOCT-1.1.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-CONCOCT-1.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads

description:
  A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads


pkgId: 08c25b06e287f7e22e6687db6391b2114f764738a14408e8030216296c1c495f
name: gensoft-CRISPRcasIdentifier-1.1.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-CRISPRcasIdentifier-1.1.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-CRISPRcasIdentifier-1.1.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CRISPRcasIdentifier is an effective machine learning approach for the identification and classification of CRISPR-Cas systems.

description:
  CRISPRcasIdentifier is an effective machine learning approach for the identification and classification of CRISPR-Cas systems.


pkgId: 89a58146ed2e8123fefcb1593bf26817d98e79d7f67b1067948a5b687af766c8
name: gensoft-CRISPRidentify-1.0.1
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-CRISPRidentify-1.0.1-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-CRISPRidentify-1.0.1-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CRISPRidentify is a tool to search for CRISPR arrays which utilises machine learning approach for distinguishing false candidates from true CRISPRS

description:
  CRISPRidentify is a tool to search for CRISPR arrays which utilises machine learning approach for distinguishing false candidates from true CRISPRS


pkgId: 34362934bcdaeb699ec8eaf952d895546b1a4bbdfa600ac59c20a030039d3c79
name: gensoft-Celera_Assembler-8.3rc2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 1023fdb9bd24
rpm_sourcerpm: gensoft-Celera_Assembler-8.3rc2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Celera_Assembler-8.3rc2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Celera Assembler is a de novo whole-genome shotgun (WGS) DNA sequence assembler. It reconstructs long sequences of genomic DNA from fragmentary data produced by whole-genome shotgun sequencing

description:
  Celera Assembler is a de novo whole-genome shotgun (WGS) DNA sequence assembler. It reconstructs long sequences of genomic DNA from fragmentary data produced by whole-genome shotgun sequencing


pkgId: 4749581278e28dbceefdb43c583018f53a9753584d0db73380943c6795bdffdb
name: gensoft-Cenote-Taker2-2.1.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: Cenote-Taker2-2.1.5
rpm_sourcerpm: gensoft-Cenote-Taker2-2.1.5-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Cenote-Taker2-2.1.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Cenote-Taker 2 is a dual function bioinformatics tool. On the one hand, Cenote-Taker 2 can discover/predict virus sequences from any kind of genome or metagenomic assembly. On the other hand, virus sequences/genomes (perhaps predicted by another tool?) can be annotated with a variety of sequences features, genes, and taxonomy. Either the discovery or the the annotation module can be used independently.

description:
  Cenote-Taker 2 is a dual function bioinformatics tool. On the one hand, Cenote-Taker 2 can discover/predict virus sequences from any kind of genome or metagenomic assembly. On the other hand, virus sequences/genomes (perhaps predicted by another tool?) can be annotated with a variety of sequences features, genes, and taxonomy. Either the discovery or the the annotation module can be used independently.


pkgId: 271bdc48f1a143cf107dff4d175f5cdd3663b0a785b74bd94f705f6747ac1547
name: gensoft-Cgl-0.60.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9ce970a23518
rpm_sourcerpm: gensoft-Cgl-0.60.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Cgl-0.60.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts

description:
  The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts


pkgId: a417e6622a7c4406d5602bfeae77228f230cf90fb7a34885318e22ac0e9493c1
name: gensoft-ChIPMunk-v8
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3b4cbd857408
rpm_sourcerpm: gensoft-ChIPMunk-v8-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ChIPMunk-v8-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  fast heuristic DNA motif digger based a on greedy approach accompanied by bootstrapping. ChIPMunk identifies the strong motif with the maximum Discrete Information Content in a set of DNA sequences

description:
  fast heuristic DNA motif digger based a on greedy approach accompanied by bootstrapping. ChIPMunk identifies the strong motif with the maximum Discrete Information Content in a set of DNA sequences


pkgId: 525281b1b1568d3d9628e8f186aefbea199066ab342646350ce737cbee14e04c
name: gensoft-CheckM-1.1.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-CheckM-1.1.2-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-CheckM-1.1.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.

description:
  CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.


pkgId: 14e095d04fb8b717a768361d37ff403393eaacbbbeab65049039ecced5a5fa32
name: gensoft-CheckV-0.7.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-CheckV-0.7.0-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-CheckV-0.7.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identification of host contamination for integrated proviruses, estimating completeness for genome fragments, and identification of closed genomes.

description:
  a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identification of host contamination for integrated proviruses, estimating completeness for genome fragments, and identification of closed genomes.


pkgId: e3096939d9c29cdac172018a2760a2096f79f7de02b8a9cfb381d4e832e4601c
name: gensoft-ClinSV-0.9
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-ClinSV-0.9-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ClinSV-0.9-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data

description:
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data


pkgId: 84aebe7ef598ea8e03d0bf2eee41d62a2d30600e4ea0bc32ff2efe95365a8709
name: gensoft-ClonalFrameML-1.12
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ClonalFrameML-1.12
rpm_sourcerpm: gensoft-ClonalFrameML-1.12-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ClonalFrameML-1.12-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ClonalFrameML is a maximum likelihood implementation of the Bayesian software ClonalFrame which was previously described by Didelot and Falush (2007). The recombination model underpinning ClonalFrameML is exactly the same as for ClonalFrame, but this new implementation is a lot faster, is able to deal with much larger genomic dataset, and does not suffer from MCMC convergence issues.

description:
  ClonalFrameML is a maximum likelihood implementation of the Bayesian software ClonalFrame which was previously described by Didelot and Falush (2007). The recombination model underpinning ClonalFrameML is exactly the same as for ClonalFrame, but this new implementation is a lot faster, is able to deal with much larger genomic dataset, and does not suffer from MCMC convergence issues.


pkgId: 0e44a5f60f378f6df4008cad5af96d3e4432ccb7c38f7da6f002d7e53b944cfa
name: gensoft-ClusterONE-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 223d0e9c227e
rpm_sourcerpm: gensoft-ClusterONE-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ClusterONE-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Clustering with Overlapping Neighborhood Expansion is a graph clustering algorithm that is able to handle weighted graphs and readily generates overlapping clusters

description:
  Clustering with Overlapping Neighborhood Expansion is a graph clustering algorithm that is able to handle weighted graphs and readily generates overlapping clusters


pkgId: 12f34ec2997d9797a1f8651e0f6b0e9d3fc0da3dc0e820995670a14e095da642
name: gensoft-CoinUtils-2.11.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9ce970a23518
rpm_sourcerpm: gensoft-CoinUtils-2.11.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-CoinUtils-2.11.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions - classes for storing and manipulating sparse matrices and vectors, performing matrix factorization, parsing input files in standard formats, e.g. MPS, building representations of mathematical programs, performing simple presolve operations, warm starting algorithms for mathematical programs, comparing floating point numbers with a tolerance classes for storing and manipulating conflict graphs, and classes for searching and storing cliques and odd cycles in conflict graphs, among others

description:
  CoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions - classes for storing and manipulating sparse matrices and vectors, performing matrix factorization, parsing input files in standard formats, e.g. MPS, building representations of mathematical programs, performing simple presolve operations, warm starting algorithms for mathematical programs, comparing floating point numbers with a tolerance classes for storing and manipulating conflict graphs, and classes for searching and storing cliques and odd cycles in conflict graphs, among others


pkgId: 8a7c516da331b4881b6f51170c46ce3de22b822c143ec8e4aaad85cd9474828c
name: gensoft-CompostBin-0.0.1
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c4d1aa11e2b5
rpm_sourcerpm: gensoft-CompostBin-0.0.1-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-CompostBin-0.0.1-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CompostBin is a DNA-composition-based binning algorithm for classifying metagenomic reads. Unlike previous methods that seek to bin assembled contigs and often require training on known reference genomes, CompostBin has the ability to accurately bin raw sequence reads without need for assembly or training. (matlab part not installed)

description:
  CompostBin is a DNA-composition-based binning algorithm for classifying metagenomic reads. Unlike previous methods that seek to bin assembled contigs and often require training on known reference genomes, CompostBin has the ability to accurately bin raw sequence reads without need for assembly or training. (matlab part not installed)


pkgId: 62bfe2f2a1a0ad2b8426be4518020ff305cb50629bd33ac29ea99612c1059255
name: gensoft-Count-2018-11-30
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3b4cbd857408
rpm_sourcerpm: gensoft-Count-2018-11-30-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Count-2018-11-30-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Count is a software package for the evolutionary analysis of homolog family sizes (phylogenetic profiles), or other numerical census-type characters along a phylogeny.

description:
  Count is a software package for the evolutionary analysis of homolog family sizes (phylogenetic profiles), or other numerical census-type characters along a phylogeny.


pkgId: dae023d281e65dbd835ba0876e886fc3198afb67021140cf3b2cb934243e0a9c
name: gensoft-Cube-Bundle4.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-Cube-Bundle4.0-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Cube-Bundle4.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. bundle version 3.0 provides the following CubeLib 4.4.3, CubeGUI 4.4.3 and CubeW 4.4.2

description:
  a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. bundle version 3.0 provides the following CubeLib 4.4.3, CubeGUI 4.4.3 and CubeW 4.4.2


pkgId: 4227e21f7d83b00de3d478ae985c24f1a2fc76b4777402190d751538971eb972
name: gensoft-DAS_Tool-1.1.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-DAS_Tool-1.1.2-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-DAS_Tool-1.1.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly. Installed with diamond as default search engine instead of usearch.

description:
  an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly. Installed with diamond as default search engine instead of usearch.


pkgId: bca8de1954fbde2e22d4044ec28706c3aa394af840368813b298c11382e59c5b
name: gensoft-DRAM-1.5.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: DRAM
rpm_sourcerpm: gensoft-DRAM-1.5.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-DRAM-1.5.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Distilled and Refined Annotation of Metabolism. A tool for the annotation and curation of function for microbial and viral genomes

description:
  Distilled and Refined Annotation of Metabolism. A tool for the annotation and curation of function for microbial and viral genomes


pkgId: a6a61781a6e4224e834233746e337128e50ced72d555243df78fa6201f583c83
name: gensoft-DaliLite-v5
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e336bad3cf1b
rpm_sourcerpm: gensoft-DaliLite-v5-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-DaliLite-v5-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  program for protein structural alignment and structure database search. It is based on the Dali method

description:
  program for protein structural alignment and structure database search. It is based on the Dali method


pkgId: 3c44d420a7c0e58011f93c7bd4811e4b5e09366f4bf5762521671e63a21a7f0c
name: gensoft-DeepETPicker-1.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-DeepETPicker-1.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-DeepETPicker-1.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A deep learning based open-source software with a friendly user interface to pick 3D particles rapidly and accurately from cryo-electron tomograms

description:
  A deep learning based open-source software with a friendly user interface to pick 3D particles rapidly and accurately from cryo-electron tomograms


pkgId: caf7693a805260eec643106dbbb002a1d6cce895d2203fc999d882042c27aaa8
name: gensoft-EBG-0.13.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-EBG-0.13.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-EBG-0.13.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  EBG is a Python tool for predicting the Felsenstein Bootstrap Support of phylogenies inferred by RAxML-NG. It was trained on empirical datasets from TreeBASE and can use both AA and DNA data.

description:
  EBG is a Python tool for predicting the Felsenstein Bootstrap Support of phylogenies inferred by RAxML-NG. It was trained on empirical datasets from TreeBASE and can use both AA and DNA data.


pkgId: 24454e60ed8152e1ab914bb91f7800fea9ab84578d89215367b34046b59aee3e
name: gensoft-EIGENSOFT-6.1.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 04184bf05081
rpm_sourcerpm: gensoft-EIGENSOFT-6.1.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-EIGENSOFT-6.1.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The EIGENSOFT package combines functionality from population genetics methods (Patterson et al. 2006) and EIGENSTRAT stratification correction method (Price et al. 2006).

description:
  The EIGENSOFT package combines functionality from population genetics methods (Patterson et al. 2006) and EIGENSTRAT stratification correction method (Price et al. 2006).


pkgId: 8238878261446a68d8185403956204cfcf726a0244aad98c30da8505ee250dff
name: gensoft-EMAN2-2.99.70
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-EMAN2-2.99.70-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-EMAN2-2.99.70-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  EMAN is a broadly based greyscale scientific image processing suite with a primary focus on processing data from transmission electron microscopes.

description:
  EMAN is a broadly based greyscale scientific image processing suite with a primary focus on processing data from transmission electron microscopes.


pkgId: 4db5211ccd40557518af0243da8b5f917551078dca447426b05f69c74c7f2bfa
name: gensoft-EMIRGE-0.61.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: reg
rpm_sourcerpm: gensoft-EMIRGE-0.61.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-EMIRGE-0.61.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  EMIRGE (Expectation-Maximization Iterative Reconstruction of Genes from the Environment) reconstructs full length ribosomal genes from short read sequencing data

description:
  EMIRGE (Expectation-Maximization Iterative Reconstruction of Genes from the Environment) reconstructs full length ribosomal genes from short read sequencing data


pkgId: 8dd2d1886a4fa268c90379287ab5c806ae1a728c71323bf05813ebb373b0093e
name: gensoft-EmPATHi-1.0.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: gcc
rpm_sourcerpm: gensoft-EmPATHi-1.0.6-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-EmPATHi-1.0.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool for the prediction of bacteriophage protein functions. It utilizes the highly informative ProtT5 protein embeddings to make predictions

description:
  a tool for the prediction of bacteriophage protein functions. It utilizes the highly informative ProtT5 protein embeddings to make predictions


pkgId: 78822a197d3d311ae6bb6975aaccf3aaaf21e1631f8b41303b9a2ffd63bd1d51
name: gensoft-EzClermont-0.7.0-rc
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-EzClermont-0.7.0-rc-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-EzClermont-0.7.0-rc-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool for using the Clermont 2013 PCR typing method for in silico analysis of E. coli whole genomes or assembled contigs.

description:
  a tool for using the Clermont 2013 PCR typing method for in silico analysis of E. coli whole genomes or assembled contigs.


pkgId: 24af92a35da70647115a8e524f4d6c9b30cbb06b0aad94eb61d7dfd04cacfdf1
name: gensoft-FLASH-1.2.11
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: FLASH-1.2.11
rpm_sourcerpm: gensoft-FLASH-1.2.11-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-FLASH-1.2.11-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FLASH (Fast Length Adjustment of SHort reads) is a very fast and accurate software tool to merge paired-end reads from next-generation sequencing experiments. FLASH is designed to merge pairs of reads when the original DNA fragments are shorter than twice the length of reads. The resulting longer reads can significantly improve genome assemblies. They can also improve transcriptome assembly when FLASH is used to merge RNA-seq data.

description:
  FLASH (Fast Length Adjustment of SHort reads) is a very fast and accurate software tool to merge paired-end reads from next-generation sequencing experiments. FLASH is designed to merge pairs of reads when the original DNA fragments are shorter than twice the length of reads. The resulting longer reads can significantly improve genome assemblies. They can also improve transcriptome assembly when FLASH is used to merge RNA-seq data.


pkgId: 0bf55ac9f40886c4616af609ca0366a1335031289ae8f43ee93e293637734f40
name: gensoft-FQreport-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: FQreport-1.0
rpm_sourcerpm: gensoft-FQreport-1.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-FQreport-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  estimating several standard descriptive statistics from FASTQ-formatted High-Throughput Sequencing (HTS) read files

description:
  estimating several standard descriptive statistics from FASTQ-formatted High-Throughput Sequencing (HTS) read files


pkgId: f1eab89b9098201f895b086a8ae98cf5635f12cbd6399da39264c88111b97d45
name: gensoft-FQsum-0.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-FQsum-0.4-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-FQsum-0.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FQsum (FASTQ summary) is a lightweight utility tool written in Java for estimating different descriptive statistics from FASTQ-formatted High-Throughput Sequencing (HTS) read files

description:
  FQsum (FASTQ summary) is a lightweight utility tool written in Java for estimating different descriptive statistics from FASTQ-formatted High-Throughput Sequencing (HTS) read files


pkgId: 0bb195a5f27cd1c2ae6d65321ed2c123dfb33eb3a023ec7168bbe9b52b2c7ad7
name: gensoft-FROGS-3.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b6716dfa6911
rpm_sourcerpm: gensoft-FROGS-3.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-FROGS-3.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data

description:
  a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data


pkgId: f56af2f83c47c03d2263c7eabdb2cd22b39e762897787ce4c4a1803b491b75b4
name: gensoft-FTGL-2.1.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-FTGL-2.1.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-FTGL-2.1.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a free cross-platform Open Source C++ library that uses Freetype2 to simplify rendering fonts in OpenGL applications.

description:
  a free cross-platform Open Source C++ library that uses Freetype2 to simplify rendering fonts in OpenGL applications.


pkgId: 890e88f9c62abe0db03153980e226b3bd635aff730306869770aa12cc35fb5c6
name: gensoft-FastANI-1.3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-FastANI-1.3-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-FastANI-1.3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies.

description:
  FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies.


pkgId: 7930587793cc7de13157fa9e5d68d9eb662acf724d9d8c470fc7cd11c595f97a
name: gensoft-FastCodeML-1.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3c5e946efb3f
rpm_sourcerpm: gensoft-FastCodeML-1.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-FastCodeML-1.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FastCodeML is a software to infer positive selection along positions of a protein coding gene using the Branch-Site model of evolution (Yang and Nielsen, 2002, Mol Biol Evol).

description:
  FastCodeML is a software to infer positive selection along positions of a protein coding gene using the Branch-Site model of evolution (Yang and Nielsen, 2002, Mol Biol Evol).


pkgId: cc47864a910061aa9e81e9cd99300779d486165ee07a7847d28d73d26c492918
name: gensoft-FastTree-2.1.11
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: FastTree-2.1.11
rpm_sourcerpm: gensoft-FastTree-2.1.11-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-FastTree-2.1.11-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences

description:
  FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences


pkgId: 3e32db48ca43c764dfa2624fee4a705a0cf480f27ff62d14e5856869c5c107fb
name: gensoft-FastqToSanger-20120405
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e8854f256f48
rpm_sourcerpm: gensoft-FastqToSanger-20120405-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-FastqToSanger-20120405-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FastqToSanger is a tool that detects the quality scoring system in FastQ formatted files, and can convert data to Sanger one if needed.

description:
  FastqToSanger is a tool that detects the quality scoring system in FastQ formatted files, and can convert data to Sanger one if needed.


pkgId: 2a5a853fe1b15e14c3027dc0090d458f0cf3e7a244bc45f55d9bbfc7b168bdd0
name: gensoft-FigTree-1.4.4
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3b4cbd857408
rpm_sourcerpm: gensoft-FigTree-1.4.4-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-FigTree-1.4.4-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures.

description:
  FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures.


pkgId: 920a406ae24a981fcaf650890be92a283667d497da382546be9740a434c7d76e
name: gensoft-Filtlong-0.2.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-Filtlong-0.2.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Filtlong-0.2.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter.

description:
  Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter.


pkgId: c15b12b261df63a184f992618e56e0df1a9547423c543b14502d1858c9393376
name: gensoft-Flye-2.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 4fce1dedd0ae
rpm_sourcerpm: gensoft-Flye-2.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Flye-2.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies.  It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline, it takes raw PB / ONT reads as input and outputs polished contigs.  Flye also includes a special mode for metagenome assembly.

description:
  Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies.  It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline, it takes raw PB / ONT reads as input and outputs polished contigs.  Flye also includes a special mode for metagenome assembly.


pkgId: 4b6b104894de8a3c1d8d9fa001469916916ca45e319f3629343ff75ccc2f3f64
name: gensoft-GEMMA-0.98.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 1676314554dd
rpm_sourcerpm: gensoft-GEMMA-0.98.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-GEMMA-0.98.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  software implementing the Genome-wide Efficient Mixed Model Association algorithm for a standard linear mixed model and some of its close relatives for genome-wide association studies (GWAS)

description:
  software implementing the Genome-wide Efficient Mixed Model Association algorithm for a standard linear mixed model and some of its close relatives for genome-wide association studies (GWAS)


pkgId: 5d22ac66e888d80867b6db38026d4a9eb409d6b3bb1e80ecb1e45f8fef423d29
name: gensoft-GFAffix-0.1.2.4
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-GFAffix-0.1.2.4-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-GFAffix-0.1.2.4-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.

description:
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.


pkgId: 0ac145721886740063866390188fbccbc0cc3ebd571d925cd714194b228ed01f
name: gensoft-GLIMPSE-1.1.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c5b139a2852c
rpm_sourcerpm: gensoft-GLIMPSE-1.1.1-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-GLIMPSE-1.1.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Genotype Likelihoods IMputation and PhaSing mEthod is a phasing and imputation method for large-scale low-coverage sequencing studies

description:
  Genotype Likelihoods IMputation and PhaSing mEthod is a phasing and imputation method for large-scale low-coverage sequencing studies


pkgId: 6632c1a5b388438edd577a4e462f3c8c2852a24300fc7da9714f2ad181e096da
name: gensoft-GRM-MAF-LD-20180708
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: GRM-MAF-LD-20180708
rpm_sourcerpm: gensoft-GRM-MAF-LD-20180708-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-GRM-MAF-LD-20180708-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  tool to help estimating how the sizes of SNP effects on a given polygenic human trait or disease depend on their minor allele frequency (MAF) in the population and their level of linkage disequilibrium (LD).

description:
  tool to help estimating how the sizes of SNP effects on a given polygenic human trait or disease depend on their minor allele frequency (MAF) in the population and their level of linkage disequilibrium (LD).


pkgId: 243f2972e4a1996d13d3114bad32dcd7427e9eebe3f743ac844730524f8b54de
name: gensoft-GTDBTk-1.3.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-GTDBTk-1.3.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-GTDBTk-1.3.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB.

description:
  a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB.


pkgId: a9bffb1120113b2273ac4fc713cb022ad58c132283f1e4bf98b4adad72a1f4c2
name: gensoft-GUSHR-1.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: GUSHR-1.0.0
rpm_sourcerpm: gensoft-GUSHR-1.0.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-GUSHR-1.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Assembly-free construction of UTRs from short read RNA-Seq data on the basis of coding sequence annotation

description:
  Assembly-free construction of UTRs from short read RNA-Seq data on the basis of coding sequence annotation


pkgId: 5c073e33b378c106bc92fa90bdae6d0a5b7c70a0d0ad8a94d3431b5207d58d87
name: gensoft-GemSIM-v1.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: GemSIM-v1.6
rpm_sourcerpm: gensoft-GemSIM-v1.6-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-GemSIM-v1.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  software package for generating realistic simulated next-generation sequencing reads with quality score values

description:
  software package for generating realistic simulated next-generation sequencing reads with quality score values


pkgId: 586ddb049b768305fcbfb8580fe43c94ec261ae639643e9fd3eb2b32438fda49
name: gensoft-GeneRax-2.1.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-GeneRax-2.1.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-GeneRax-2.1.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a parallel tool for species tree-aware maximum likelihood based gene family tree inference under gene duplication, transfer, and loss.

description:
  a parallel tool for species tree-aware maximum likelihood based gene family tree inference under gene duplication, transfer, and loss.


pkgId: 9400c3bb14bf6b28f491ff579bac0933c3ba00a42a994351996dbd5c499f2a0f
name: gensoft-GenomeThreader-1.7.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: GenomeThreader-1.7.3
rpm_sourcerpm: gensoft-GenomeThreader-1.7.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-GenomeThreader-1.7.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments.

description:
  a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments.


pkgId: 4cdbf1b174136f36b8038db9bf836ca80b26fefe1b48d3050cc384846e277fea
name: gensoft-GenomicConsensus-2.3.3
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-GenomicConsensus-2.3.3-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-GenomicConsensus-2.3.3-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  This tool gets a CRISPR profile by identifying the presence of known spacers and direct repeats (DRs) in a given sequence based on a catalogue.

description:
  This tool gets a CRISPR profile by identifying the presence of known spacers and direct repeats (DRs) in a given sequence based on a catalogue.


pkgId: 018ae5bc1f58385657908d784128e897d5c737586f6f5b23c0cf3a8656bed56a
name: gensoft-Genrich-0.6.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: Genrich-0.6.1
rpm_sourcerpm: gensoft-Genrich-0.6.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Genrich-0.6.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Genrich is a peak-caller for genomic enrichment assays (e.g. ChIP-seq, ATAC-seq). It analyzes alignment files generated following the assay and produces a file detailing peaks of significant enrichment.

description:
  Genrich is a peak-caller for genomic enrichment assays (e.g. ChIP-seq, ATAC-seq). It analyzes alignment files generated following the assay and produces a file detailing peaks of significant enrichment.


pkgId: acdf5657af3765167b82f43b075ad916628475cdc7b9ad394a8945aec566f045
name: gensoft-GrapeTree-1.5.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-GrapeTree-1.5.0-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-GrapeTree-1.5.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata

description:
  a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata


pkgId: d4753df77b19b4ac32deb77bc158d6d4b33d79d8685e3835f21688aab055b5e8
name: gensoft-GroopM-0.3.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 68a4a157509f
rpm_sourcerpm: gensoft-GroopM-0.3.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-GroopM-0.3.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GroopM is a metagenomic binning toolset. It leverages spatio-temoral dynamics (differential coverage) to accurately (and almost automatically) extract population genomes from multi-sample metagenomic datasets.

description:
  GroopM is a metagenomic binning toolset. It leverages spatio-temoral dynamics (differential coverage) to accurately (and almost automatically) extract population genomes from multi-sample metagenomic datasets.


pkgId: e1b5afa43cdaa1d9f639615294863f00b96aa5de73f6fadb8017a48eacabf9f0
name: gensoft-HGTector-2.0b3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: HGTector-2.0b3
rpm_sourcerpm: gensoft-HGTector-2.0b3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-HGTector-2.0b3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  HGTector2 - Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.

description:
  HGTector2 - Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.


pkgId: 790808c50d90122f180ad66943439971ec6922d415fb7916440161ec616ded0e
name: gensoft-HiC-Pro-2.11.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0c47002539ff
rpm_sourcerpm: gensoft-HiC-Pro-2.11.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-HiC-Pro-2.11.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro can analyse data from digestion protocols as well as data from protocols that do not require restriction enzyme such as DNase Hi-C.

description:
  HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro can analyse data from digestion protocols as well as data from protocols that do not require restriction enzyme such as DNase Hi-C.


pkgId: 984f3282a75f909583cfbb6224a8abf656c28f671a8d722acf53f4d842953bfb
name: gensoft-IGV-2.11.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 4dca72ef434c
rpm_sourcerpm: gensoft-IGV-2.11.6-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-IGV-2.11.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets.

description:
  The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets.


pkgId: 1ead0deaa9e2931c92cc444c20c48aa7354bdc3efc9221af45a17f60ba394a8f
name: gensoft-IMOD-4.11.25
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-IMOD-4.11.25-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-IMOD-4.11.25-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections

description:
  a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections


pkgId: 1f62494548053d14dda533d9f8de87e05143d03d526909d4739de25cf21cbdc1
name: gensoft-IMP-2.13.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: IMP-2.13.0
rpm_sourcerpm: gensoft-IMP-2.13.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-IMP-2.13.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a comprehensive structural characterization of biomolecules ranging in size and complexity from small peptides to large macromolecular assemblies

description:
  a comprehensive structural characterization of biomolecules ranging in size and complexity from small peptides to large macromolecular assemblies


pkgId: fe421131927db9f46fd7cd8ffd7670212c3ccce7875d47827ddbc8c22001a4f2
name: gensoft-IQ-TREE-1.6.12
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-IQ-TREE-1.6.12-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-IQ-TREE-1.6.12-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. An ultrafast bootstrap approximation to assess branch supports. Ultrafast and automatic model selection.

description:
  IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. An ultrafast bootstrap approximation to assess branch supports. Ultrafast and automatic model selection.


pkgId: 16414d1024a7e0d1040a50662d8ed4d2c844eb8dfb0972b2f0d975c28630a134
name: gensoft-IS_mapper-2.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: IS-mapper-2.0.1
rpm_sourcerpm: gensoft-IS_mapper-2.0.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-IS_mapper-2.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  This program takes paired end Illumina short read sequence data, an IS query of interest and a reference genome or assembly and reports the locations of the IS query in the reference genome or the assembly.

description:
  This program takes paired end Illumina short read sequence data, an IS query of interest and a reference genome or assembly and reports the locations of the IS query in the reference genome or the assembly.


pkgId: 53a2d8c28af9b0a3e6499ce23505d13ddeef7a749abce18d7d1d892b0538574b
name: gensoft-ITSx-1.1.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9ce970a23518
rpm_sourcerpm: gensoft-ITSx-1.1.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ITSx-1.1.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing

description:
  Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing


pkgId: d2785f9d037cf8f67ea3b5f476d570d2edc3f78d7d3766f8ca42fbbf55fdddc4
name: gensoft-ImageMagick-6.9.10-91
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 41a7fcef62e6
rpm_sourcerpm: gensoft-ImageMagick-6.9.10-91-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-ImageMagick-6.9.10-91-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Use ImageMagick to create, edit, compose, or convert bitmap images. It can read and write images in a variety of formats (over 200) including PNG, JPEG, JPEG-2000, GIF, TIFF, DPX, EXR, WebP, Postscript, PDF, and SVG. Use ImageMagick to resize, flip, mirror, rotate, distort, shear and transform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bezier curves.

description:
  Use ImageMagick to create, edit, compose, or convert bitmap images. It can read and write images in a variety of formats (over 200) including PNG, JPEG, JPEG-2000, GIF, TIFF, DPX, EXR, WebP, Postscript, PDF, and SVG. Use ImageMagick to resize, flip, mirror, rotate, distort, shear and transform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bezier curves.


pkgId: 06fb10ff63458eb10226f0a3d359a0dc22b68d1a80c71e0a653ba08a72e76a40
name: gensoft-Integron_Finder-1.5.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-Integron_Finder-1.5.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Integron_Finder-1.5.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Integron Finder aims at detecting integrons in DNA sequences by finding particular features of the integron the attC sites, the integrase and when possible attI site and promoters. It provides a full pipeline from a fasta file to a gene bank file with the annotation of the element and its component.

description:
  Integron Finder aims at detecting integrons in DNA sequences by finding particular features of the integron the attC sites, the integrase and when possible attI site and promoters. It provides a full pipeline from a fasta file to a gene bank file with the annotation of the element and its component.


pkgId: a487458f6d87bd8d1f1c30bcea37be4fc4064ac18bb9e646d95831368a1f6f49
name: gensoft-IsoQuant-3.6.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-IsoQuant-3.6.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-IsoQuant-3.6.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  IsoQuant is a tool for the genome-based analysis of long RNA reads, such as PacBio or Oxford Nanopores.

description:
  IsoQuant is a tool for the genome-based analysis of long RNA reads, such as PacBio or Oxford Nanopores.


pkgId: c6b00ed60e17f544853354237563e304fe3726a6a9a792db01143e1061e1729f
name: gensoft-JAGS-4.3.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: JAGS-4.3.0
rpm_sourcerpm: gensoft-JAGS-4.3.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-JAGS-4.3.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  jags  is  a  program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike  BUGS.

description:
  jags  is  a  program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike  BUGS.


pkgId: 329b319856150ebe4b1f864ba75fffa8ec45bd764a8c171dd5537e06ae1eab67
name: gensoft-Jupyter-Notebook-6.4.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: Jupyter-Notebook-6.4.3
rpm_sourcerpm: gensoft-Jupyter-Notebook-6.4.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Jupyter-Notebook-6.4.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include - data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more.

description:
  Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include - data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more.


pkgId: 9fe892185f0825f7c32cc791cb6352286253612f870cda49472cea54a8016275
name: gensoft-KMC-3.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c7baf856ae31
rpm_sourcerpm: gensoft-KMC-3.0.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-KMC-3.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  KMC-K-mer Counter is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects. KMC scans the raw reads and produces a compact representation of all non-unique reads accompanied with number of their occurrences. The algorithm implemented in KMC makes use mostly of disk space rather than RAM, which allows to use KMC even on rather typical personal computers.

description:
  KMC-K-mer Counter is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects. KMC scans the raw reads and produces a compact representation of all non-unique reads accompanied with number of their occurrences. The algorithm implemented in KMC makes use mostly of disk space rather than RAM, which allows to use KMC even on rather typical personal computers.


pkgId: 403256a8fe729958b09e8f46b2268354f8ee49b0277a9ae4816a03837e8c0aad
name: gensoft-KaKs_Calculator-1.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: KaKs-Calculator-1.2
rpm_sourcerpm: gensoft-KaKs_Calculator-1.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-KaKs_Calculator-1.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  KaKs_Calculator adopts model selection and model averaging to calculate nonsynonymous (Ka) and synonymous (Ks) substitution rates, attempting to include as many features as needed for accurately capturing evolutionary information in protein-coding sequences. In addition, several existing methods for calculating Ka and Ks are also incorporated into KaKs_Calculator.

description:
  KaKs_Calculator adopts model selection and model averaging to calculate nonsynonymous (Ka) and synonymous (Ks) substitution rates, attempting to include as many features as needed for accurately capturing evolutionary information in protein-coding sequences. In addition, several existing methods for calculating Ka and Ks are also incorporated into KaKs_Calculator.


pkgId: e3ac5f043aa147952b3e567fa25358403f4653e6c87144eb36ab92714f1e14d2
name: gensoft-Kalign-2.04
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: Kalign-2.04
rpm_sourcerpm: gensoft-Kalign-2.04-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Kalign-2.04-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Kalign is a fast and accurate multiple sequence alignment algorithm designed to align large numbers of protein sequences.

description:
  Kalign is a fast and accurate multiple sequence alignment algorithm designed to align large numbers of protein sequences.


pkgId: 8491ce2b204dae978c71b5adb6c7ea056d13ec6c33bef624599dc476c0607de8
name: gensoft-KrakenTools-1.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-KrakenTools-1.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-KrakenTools-1.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a suite of scripts to be used alongside the Kraken, KrakenUniq, Kraken 2, or Bracken programs. These scripts are designed to help Kraken users with downstream analysis of Kraken results.

description:
  a suite of scripts to be used alongside the Kraken, KrakenUniq, Kraken 2, or Bracken programs. These scripts are designed to help Kraken users with downstream analysis of Kraken results.


pkgId: d21f44fe040b217606357449d5194a986510d169d6ec8fbfad66af4a71506827
name: gensoft-KronaTools-2.7.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: KronaTools-2.7.1
rpm_sourcerpm: gensoft-KronaTools-2.7.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-KronaTools-2.7.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Hierarchical data browser. Krona allows hierarchical data to be explored with zoomable HTML5 pie charts. Krona charts can be created using an Excel template or Krona Tools, which includes support for several bioinformatics tools and raw data formats.

description:
  Hierarchical data browser. Krona allows hierarchical data to be explored with zoomable HTML5 pie charts. Krona charts can be created using an Excel template or Krona Tools, which includes support for several bioinformatics tools and raw data formats.


pkgId: b19fe73e6005b2697b1c47fea68dfe0822fc222b2c8328c037b94169efa736b5
name: gensoft-LDBlockShow-1.40
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: LDBlockShow
rpm_sourcerpm: gensoft-LDBlockShow-1.40-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-LDBlockShow-1.40-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  LDBlockShow is a fast and effective tool to generate linkage disequilibrium (LD) heatmap from VCF files.

description:
  LDBlockShow is a fast and effective tool to generate linkage disequilibrium (LD) heatmap from VCF files.


pkgId: d4050e53ee9b68f6ee02cf8e7101d280d6501333f9a189c9cca02ab190ee048b
name: gensoft-LS_BSR-1.03
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-LS_BSR-1.03-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-LS_BSR-1.03-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Large scale blast score ratio (LS-BSR). LS-BSR is a method to compare open reading frames betweeen a set of bacterial isolates.  The result of the script is a matrix that can be easily parsed to compare the genetic content between groups.

description:
  Large scale blast score ratio (LS-BSR). LS-BSR is a method to compare open reading frames betweeen a set of bacterial isolates.  The result of the script is a matrix that can be easily parsed to compare the genetic content between groups.


pkgId: c31f4e024f517f221984da73cadf41f42ebdc23ec8169b2e72d4e84afcfe41e3
name: gensoft-LTR_retriever-2.9.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-LTR_retriever-2.9.0-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-LTR_retriever-2.9.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons.The LTR Assembly Index (LAI) is also included in this package

description:
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons.The LTR Assembly Index (LAI) is also included in this package


pkgId: 2eb56c4e3180b3ee97c2577639e1126232909e77cf387ea4b1f3c2da0fb68d99
name: gensoft-LexicMap-0.8.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-LexicMap-0.8.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-LexicMap-0.8.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  LexicMap is a nucleotide sequence alignment tool for efficiently querying gene, plasmid, viral, or long-read sequences (>150 bp) against up to millions of prokaryotic genomes.

description:
  LexicMap is a nucleotide sequence alignment tool for efficiently querying gene, plasmid, viral, or long-read sequences (>150 bp) against up to millions of prokaryotic genomes.


pkgId: 6762cb6b6577899407dd99e812cc5e06d032dedeb176115693ec9d10f85a5e2b
name: gensoft-Lighter-1.1.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: Lighter-1.1.2
rpm_sourcerpm: gensoft-Lighter-1.1.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Lighter-1.1.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Lighter is a kmer-based error correction method for whole genome sequencing data.  Lighter uses sampling (rather than counting) to obtain a set of kmers that are likely from the genome. Using this information, Lighter can correct the reads containing sequence errors.

description:
  Lighter is a kmer-based error correction method for whole genome sequencing data.  Lighter uses sampling (rather than counting) to obtain a set of kmers that are likely from the genome. Using this information, Lighter can correct the reads containing sequence errors.


pkgId: b2cf5d8944e2323f7b3ce31ce68b21a08899b1a951029debfdbb1cfb9c8939f9
name: gensoft-MADroot-1775932
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-MADroot-1775932-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-MADroot-1775932-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Efficient implementation of the MAD method for inferring the location of the root in a large phylogeny.

description:
  Efficient implementation of the MAD method for inferring the location of the root in a large phylogeny.


pkgId: d95485defadb27b43af10afecf4242eb5ef43e4be340ed4c53fe073236a9e13c
name: gensoft-MECAT2-20190314
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d36ae7374891
rpm_sourcerpm: gensoft-MECAT2-20190314-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-MECAT2-20190314-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an ultra-fast and accurate Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads.

description:
  an ultra-fast and accurate Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads.


pkgId: 124dc70e2fbd1746d5675299773889bce04cbc17ba0591ff0abd6aab8e8320d8
name: gensoft-MESSI-0.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: MESSI-0.1.0
rpm_sourcerpm: gensoft-MESSI-0.1.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-MESSI-0.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Modeling Evolution of Secondary Structure Interaction. Infers coevolution associated with base-paired sites in DNA or RNA sequence alignments

description:
  Modeling Evolution of Secondary Structure Interaction. Infers coevolution associated with base-paired sites in DNA or RNA sequence alignments


pkgId: 635f66781b9ad9fbb5c073d249cb4b9f0a530cbda3309fdf2c23ad9dd6781569
name: gensoft-MGEfinder-1.0.6
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-MGEfinder-1.0.6-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-MGEfinder-1.0.6-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

description:
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.


pkgId: 79ac67b15382e868771ab6b7439d7ab2311f41959bace8878927be586a7ee903
name: gensoft-MHAP-2.1.3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3b4cbd857408
rpm_sourcerpm: gensoft-MHAP-2.1.3-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-MHAP-2.1.3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MinHash alignment process (MHAP pronounced MAP) locality sensitive hashing to detect overlaps and utilities.

description:
  MinHash alignment process (MHAP pronounced MAP) locality sensitive hashing to detect overlaps and utilities.


pkgId: 7fbd9da828b841db42a2ce13740d08729eb1e0f0db5f7c0a3653632b159d70e7
name: gensoft-MHC_I-3.1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 44c2b247019e
rpm_sourcerpm: gensoft-MHC_I-3.1.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-MHC_I-3.1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a collection of prediction tools for peptides binding to Major Histocompatibility Complex (MHC) class I molecules.

description:
  a collection of prediction tools for peptides binding to Major Histocompatibility Complex (MHC) class I molecules.


pkgId: 8fa468115a016c19ed65ccdac7d37d1d6588b8bf0871800a0ac1679aebb10e60
name: gensoft-MIX-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-MIX-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-MIX-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing.

description:
  Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing.


pkgId: 2bd4ece2d0e4b6c5bc22ee0af1c5d54717953a8feececcb5c03f9acc61cab06a
name: gensoft-MMseqs2-10-6d92c
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-MMseqs2-10-6d92c-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-MMseqs2-10-6d92c-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets.

description:
  MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets.


pkgId: f34fe5a71fb7b8452956fd471b9801ff639422bc4003deef561e95557e351ab7
name: gensoft-MSMC_IM-e6c5d3b
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c1d92d0e1694
rpm_sourcerpm: gensoft-MSMC_IM-e6c5d3b-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-MSMC_IM-e6c5d3b-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC

description:
  A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC


pkgId: 6708de1232d7b7c274873926c3659efa6c9c530c50c8529be8e8631982cd602c
name: gensoft-MSTclust-0.21b
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: MSTclust-0.21b
rpm_sourcerpm: gensoft-MSTclust-0.21b-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-MSTclust-0.21b-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MSTclust is a command line program written in Java to compute Minimum Spanning Tree (MST)-based clustering from either profile (i.e. tuples of positive integers) or pairwise distance data.  MSTclust can also be used to compute pairwise distances between profiles, single-linkage hierarchical classification trees, minimum spanning trees, and several statistics to assess the efficiency of a specific clustering.

description:
  MSTclust is a command line program written in Java to compute Minimum Spanning Tree (MST)-based clustering from either profile (i.e. tuples of positive integers) or pairwise distance data.  MSTclust can also be used to compute pairwise distances between profiles, single-linkage hierarchical classification trees, minimum spanning trees, and several statistics to assess the efficiency of a specific clustering.


pkgId: f079345ee70e312116013c2b8d1ff7b7725b7905694fd721997c9d918c4d48c9
name: gensoft-MakeHub-1.0.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: MakeHub-1.0.6
rpm_sourcerpm: gensoft-MakeHub-1.0.6-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-MakeHub-1.0.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a command line tool for the fully automatic generation of of track data hubs for visualizing genomes with the UCSC genome browser

description:
  a command line tool for the fully automatic generation of of track data hubs for visualizing genomes with the UCSC genome browser


pkgId: 78a3c64691a03d9c1d8c742500f05defb055091f43857821d80570703b7bae3b
name: gensoft-Mash-2.2
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mash
rpm_sourcerpm: gensoft-Mash-2.2-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Mash-2.2-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Mash is a fast sequence distance estimator that uses the MinHash algorithm and is designed to work with genomes and metagenomes in the form of assemblies or reads.

description:
  Mash is a fast sequence distance estimator that uses the MinHash algorithm and is designed to work with genomes and metagenomes in the form of assemblies or reads.


pkgId: b1d769fb2b8b8a44270e042eecbebcf0a7902acff62540e2ea90982cc18bc2a8
name: gensoft-Mauve-2.4.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c100acafe550
rpm_sourcerpm: gensoft-Mauve-2.4.0-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-Mauve-2.4.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  System for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion

description:
  System for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion


pkgId: c3e118873faae9cd83547e463edf63d777441514ecda3edc156fc291a0a092f9
name: gensoft-MauveAligner-R4736
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b8d836b93482
rpm_sourcerpm: gensoft-MauveAligner-R4736-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-MauveAligner-R4736-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  mauveAligner and progressiveMauve alignment algorithms have implemented as command-line programs that provide options not yet available in the graphical interface.

description:
  mauveAligner and progressiveMauve alignment algorithms have implemented as command-line programs that provide options not yet available in the graphical interface.


pkgId: c1cb85a77fed1f93601f336d8ca5d5c8772b76dd5c3b86f2c420c02e39463826
name: gensoft-MaxBin-2.2.7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: MaxBin-2.2.7
rpm_sourcerpm: gensoft-MaxBin-2.2.7-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-MaxBin-2.2.7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled metagenomic sequences and the reads coverage information or sequencing reads. For users convenience MaxBin will report genome-related statistics, including estimated completeness, GC content and genome size in the binning summary page.

description:
  MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled metagenomic sequences and the reads coverage information or sequencing reads. For users convenience MaxBin will report genome-related statistics, including estimated completeness, GC content and genome size in the binning summary page.


pkgId: 763a25ae682f356da272ee12166be2e1de412bc93aa2ba034636fe97558bf64a
name: gensoft-Meerkat-0.189
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c4d1aa11e2b5
rpm_sourcerpm: gensoft-Meerkat-0.189-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-Meerkat-0.189-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Meerkat is designed to identify structural variations (SVs) from paired end high throughput sequencing data.

description:
  Meerkat is designed to identify structural variations (SVs) from paired end high throughput sequencing data.


pkgId: 86b4dcb88f37278f348d96610141f4b385ea4f60e238d4e610fd4bd60ce76bcb
name: gensoft-MetaBAT-2.15
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5e73222361bd
rpm_sourcerpm: gensoft-MetaBAT-2.15-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-MetaBAT-2.15-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.

description:
  MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.


pkgId: e191f71dff115c42139f49afc46cc998c855e22a8bf08bfe5e5872c04645f0e6
name: gensoft-MetaGen-1.2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9e749cf0aee6
rpm_sourcerpm: gensoft-MetaGen-1.2.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-MetaGen-1.2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a statistically based algorithm to simultaneously identify micro- bial species and estimate their abundances in multiple metagenomic samples without using any reference genome.

description:
  a statistically based algorithm to simultaneously identify micro- bial species and estimate their abundances in multiple metagenomic samples without using any reference genome.


pkgId: 5ea6e4001f04b9b91aa7b492002b5141439b3053c2a0a4e8dc5ceec3ba7d81d3
name: gensoft-MitoFates-1.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 03ab69429323
rpm_sourcerpm: gensoft-MitoFates-1.2-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-MitoFates-1.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MitoFates predicts mitochondrial presequence, a cleavable localization signal located in N-terminal, and its cleaved position

description:
  MitoFates predicts mitochondrial presequence, a cleavable localization signal located in N-terminal, and its cleaved position


pkgId: 8edfd44005494a72cfa0458ba0cc0e8979c7cb3d98507e908ec51bc9dac2e3dc
name: gensoft-MotionCor3-1.2.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build2
rpm_sourcerpm: gensoft-MotionCor3-1.2.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-MotionCor3-1.2.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MotionCor3, an improved implementation of MotionCor2 with addition of CTF (Contrast Transfer Function) estimation, is a multi-GPU accelerated software package that enables single-pixel level correction of anisotropic beam induced sample motion for cryo-electron microscopy and cryo-electron tomography images.

description:
  MotionCor3, an improved implementation of MotionCor2 with addition of CTF (Contrast Transfer Function) estimation, is a multi-GPU accelerated software package that enables single-pixel level correction of anisotropic beam induced sample motion for cryo-electron microscopy and cryo-electron tomography images.


pkgId: 74343afaaf49c75f28cb3ace6ded825e34ed1a7a02681336d13d2d8bf1c5d465
name: gensoft-MultiQC-1.12
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build2
rpm_sourcerpm: gensoft-MultiQC-1.12-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-MultiQC-1.12-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles a HTML report. Its a general use tool, perfect for summarising the output from numerous bioinformatics tools.

description:
  MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles a HTML report. Its a general use tool, perfect for summarising the output from numerous bioinformatics tools.


pkgId: 609c99cd9a6b6dd064e063dd050162729b1febbbb71014b59294b6a8ce6a9a3d
name: gensoft-NextPolish-1.4.1
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-NextPolish-1.4.1-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-NextPolish-1.4.1-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  NextPolish is used to fix base errors (SNV/Indel) in the genome generated by noisy long reads, it can be used with short read data only or long read data only or a combination of both.

description:
  NextPolish is used to fix base errors (SNV/Indel) in the genome generated by noisy long reads, it can be used with short read data only or long read data only or a combination of both.


pkgId: eca81d7123acd4363de31984dcbf599dce2e7173df0f4e76384282c9a80a585d
name: gensoft-NiftyMIC-0.9
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-NiftyMIC-0.9-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-NiftyMIC-0.9-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.

description:
  NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.


pkgId: 7d479a2f5e1802ae9539f8d884f9a3eca8bea8bb05d666d097c0c61c3a314853
name: gensoft-NucleoATAC-0.3.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b530a9da3bf5
rpm_sourcerpm: gensoft-NucleoATAC-0.3.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-NucleoATAC-0.3.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  NucleoATAC is a python package for calling nucleosome positions and occupancy using ATAC-Seq data. Also includes general scripts for working with paired-end ATAC-Seq data (or potentially other paired-end data).

description:
  NucleoATAC is a python package for calling nucleosome positions and occupancy using ATAC-Seq data. Also includes general scripts for working with paired-end ATAC-Seq data (or potentially other paired-end data).


pkgId: 69e3d0f38a59e97805b968598f11d930afa24062be7dbf0139653c61cf54d8cd
name: gensoft-OCaml-4.10.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-OCaml-4.10.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-OCaml-4.10.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  OCaml is an implementation of the ML language, based on the Caml Light dialect extended with a complete class-based object system and a powerful module system in the style of Standard ML.

description:
  OCaml is an implementation of the ML language, based on the Caml Light dialect extended with a complete class-based object system and a powerful module system in the style of Standard ML.


pkgId: 3b78fc97eb6658f4af63693f2d3e9d129f60b8cd3ecb627c943d65f9401b97a7
name: gensoft-ODIN-0.4.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-ODIN-0.4.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ODIN-0.4.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an HMM-based approach to detect and analyse differential peaks in pairs of ChIP-seq data. ODIN performs genomic signal processing, peak calling and p-value calculation in an integrated framework

description:
  an HMM-based approach to detect and analyse differential peaks in pairs of ChIP-seq data. ODIN performs genomic signal processing, peak calling and p-value calculation in an integrated framework


pkgId: da7fd7a2ffcc6369e35a7240f63ae1d467d97d3678df62798d1901f6023c2e81
name: gensoft-OpenBLAS-0.3.21
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 227278855f67
rpm_sourcerpm: gensoft-OpenBLAS-0.3.21-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-OpenBLAS-0.3.21-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. compiled with openmp support

description:
  OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. compiled with openmp support


pkgId: f27c301b245539e99d6f63fcedccd1ec955f5bb43f208783c6813f563c89183e
name: gensoft-OrthoFinder-2.3.11
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 55c39a5bf82f
rpm_sourcerpm: gensoft-OrthoFinder-2.3.11-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-OrthoFinder-2.3.11-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics. It finds orthogroups and orthologs, infers rooted gene trees for all orthogroups and identifies all of the gene duplication events in those gene trees. It also infers a rooted species tree for the species being analysed and maps the gene duplication events from the gene trees to branches in the species tree. OrthoFinder also provides comprehensive statistics for comparative genomic analyses. OrthoFinder is simple to use and all you need to run it is a set of protein sequence files (one per species) in FASTA format.

description:
  OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics. It finds orthogroups and orthologs, infers rooted gene trees for all orthogroups and identifies all of the gene duplication events in those gene trees. It also infers a rooted species tree for the species being analysed and maps the gene duplication events from the gene trees to branches in the species tree. OrthoFinder also provides comprehensive statistics for comparative genomic analyses. OrthoFinder is simple to use and all you need to run it is a set of protein sequence files (one per species) in FASTA format.


pkgId: 83a5247b93f9e0efc068b5274932d65bfb06611e83f162e0bd469245ce539b25
name: gensoft-Osi-0.108.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9ce970a23518
rpm_sourcerpm: gensoft-Osi-0.108.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Osi-0.108.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Osi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers.

description:
  Osi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers.


pkgId: baeef65a4831e0e2b3bd8311e21ed66371f70ee2d316faa44462c9fa1d922fb6
name: gensoft-PBSuite-15.8.24
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 493333b7ea5d
rpm_sourcerpm: gensoft-PBSuite-15.8.24-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-PBSuite-15.8.24-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles.

description:
  PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles.


pkgId: ba152c3d461eca4d43166b1095457c0cdc488eeff622264db59b7909e48298b1
name: gensoft-PEET-1.18.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-PEET-1.18.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-PEET-1.18.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PEET (Particle Estimation for Electron Tomography) is an open-source package for aligning and averaging particles in 3-D subvolumes extracted from tomograms.

description:
  PEET (Particle Estimation for Electron Tomography) is an open-source package for aligning and averaging particles in 3-D subvolumes extracted from tomograms.


pkgId: d7b8e664c9e6eefe72e6769b5a7cef386fa2a3bba0186aba10f39ec4500588ac
name: gensoft-PGAP-2021-05-19
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b3c177dba245
rpm_sourcerpm: gensoft-PGAP-2021-05-19-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-PGAP-2021-05-19-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids).

description:
  The NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids).


pkgId: 2b5891c2b1035e406e05e8be5bb0ec43562c48633b46c338c4706bb397d72c76
name: gensoft-PPanGGOLiN-1.1.96
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-PPanGGOLiN-1.1.96-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-PPanGGOLiN-1.1.96-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations

description:
  a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations


pkgId: 5b86de77e823eb050cf001a2f694e2fc39411ca7a6f41b554793be0b93a37443
name: gensoft-PRISM-1.1.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-PRISM-1.1.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-PRISM-1.1.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs. PRISM_CTX is a tool for detecting inter-chromosome trans-location events.

description:
  a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs. PRISM_CTX is a tool for detecting inter-chromosome trans-location events.


pkgId: cc99be8dd908cb69e8137b88685da9c4f52d4f36b9ae61bf6aa14abaac9499c8
name: gensoft-PanACoTA-1.3.1
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-PanACoTA-1.3.1-4.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-PanACoTA-1.3.1-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PanACoTA (PANgenome with Annotations, COre identification, Tree and corresponding Alignments) is a software providing tools for large scale bacterial comparative genomics.

description:
  PanACoTA (PANgenome with Annotations, COre identification, Tree and corresponding Alignments) is a software providing tools for large scale bacterial comparative genomics.


pkgId: eb3cc7b5958e6bcc3487c4a0fd34f0a02e924e1242bf11a69552b3057b09e48b
name: gensoft-Panseq-3.2.1
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2cdd59db2cbf
rpm_sourcerpm: gensoft-Panseq-3.2.1-4.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-Panseq-3.2.1-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  determines the core and accessory regions among a collection of genomic sequences based on user-defined parameters. It readily extracts regions unique to a genome or group of genomes, identifies SNPs within shared core genomic regions, constructs files for use in phylogeny programs based on both the presence/absence of accessory regions and SNPs within core regions.

description:
  determines the core and accessory regions among a collection of genomic sequences based on user-defined parameters. It readily extracts regions unique to a genome or group of genomes, identifies SNPs within shared core genomic regions, constructs files for use in phylogeny programs based on both the presence/absence of accessory regions and SNPs within core regions.


pkgId: 5f9ab9f03dd7013538082de6435937902fb1d8dab7d299fc9b425fdcd9973905
name: gensoft-Parabricks-4.0.1
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-Parabricks-4.0.1-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Parabricks-4.0.1-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Nvidia Clara Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications

description:
  Nvidia Clara Parabricks is an accelerated compute framework that supports applications across the genomics industry, primarily supporting analytical workflows for DNA, RNA, and somatic mutation detection applications


pkgId: e5fadbbb25ef32e407916125b0b904b8d6bfed21353d8e46a9163f6b8ca568d5
name: gensoft-Parsimonator-1.0.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f821f3f0df7f
rpm_sourcerpm: gensoft-Parsimonator-1.0.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Parsimonator-1.0.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Parsimonator is a no-frills light-weight implementation for building starting trees under parsimony for RAxML-Light. It deploys a randomized stepwise addition order algorithm to build trees and thereafter conducts a couple of SPR (Subtree Pruning Re-Grafting moves) to further improve the parsimony score.

description:
  Parsimonator is a no-frills light-weight implementation for building starting trees under parsimony for RAxML-Light. It deploys a randomized stepwise addition order algorithm to build trees and thereafter conducts a couple of SPR (Subtree Pruning Re-Grafting moves) to further improve the parsimony score.


pkgId: 8528e0f623f389b42a569cdf862a22d4217c300cfe7e1bb786106d4962b7add6
name: gensoft-PhageTerm-1.0.12
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-PhageTerm-1.0.12-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-PhageTerm-1.0.12-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PHAGE_TERMINI software is a tool to determine phage packaging strategy and other informations using sequencing reads (Illumina TruSeq paired-end). Phage sequencing reads from a fastq file are aligned to the phage reference genome in order to calculate two types of coverage values (Whole genome coverage and the starting position coverage).

description:
  PHAGE_TERMINI software is a tool to determine phage packaging strategy and other informations using sequencing reads (Illumina TruSeq paired-end). Phage sequencing reads from a fastq file are aligned to the phage reference genome in order to calculate two types of coverage values (Whole genome coverage and the starting position coverage).


pkgId: 195102a2e8b2461263734d6396523cfe0c35b722d3a12eded3b8bc8354ab847c
name: gensoft-PhiSpy-4.2.21
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-PhiSpy-4.2.21-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-PhiSpy-4.2.21-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes. Given an annotated genome it will use several approaches to identify the most likely prophage regions.

description:
  PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes. Given an annotated genome it will use several approaches to identify the most likely prophage regions.


pkgId: 4a59d9483de83662473dbbaab25437fd56b93603baa360cb257ea7dcd49653f8
name: gensoft-PlaScope-1.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 344dbb68f35c
rpm_sourcerpm: gensoft-PlaScope-1.3.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-PlaScope-1.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  contigs classification from a WGS assembly according to their location (i.e. plasmid or chromosome). It

description:
  contigs classification from a WGS assembly according to their location (i.e. plasmid or chromosome). It


pkgId: bafaf943996972f4459f86b5d9a3bad59997284b1f8a7bf54e9e500eb7e95f99
name: gensoft-Platanus-v1.2.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b60446724e91
rpm_sourcerpm: gensoft-Platanus-v1.2.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Platanus-v1.2.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PLATform for Assembling NUcleotide Sequences Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data.

description:
  PLATform for Assembling NUcleotide Sequences Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data.


pkgId: a9460a76d58544fbe41d4987752f16350ec898b8b46daa9527ac8ef383f7c5ba
name: gensoft-Platypus-0.8.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd4d302641d1
rpm_sourcerpm: gensoft-Platypus-0.8.1-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-Platypus-0.8.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. Platypus can detect SNPs, MNPs, short indels, replacements and (using the assembly option) deletions up to several kb.

description:
  Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. Platypus can detect SNPs, MNPs, short indels, replacements and (using the assembly option) deletions up to several kb.


pkgId: ec17f0c20027234a99d9f036405aeb821a742e5b1eb37c4e269243f4ca3de641
name: gensoft-PoPoolationTE2-v1.10.03
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2a1c8fec6e1c
rpm_sourcerpm: gensoft-PoPoolationTE2-v1.10.03-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-PoPoolationTE2-v1.10.03-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  enables comparative population genomics of transposable elements (TE). As a major innovation PoPoolation TE2 introduces the physical pileup file which allows to homogenize the power to identify TEs and thus enables an unbiased comparison of TE abundance between samples, where samples could be pooled populations, tissues or sequenced individuals

description:
  enables comparative population genomics of transposable elements (TE). As a major innovation PoPoolation TE2 introduces the physical pileup file which allows to homogenize the power to identify TEs and thus enables an unbiased comparison of TE abundance between samples, where samples could be pooled populations, tissues or sequenced individuals


pkgId: 7bb65b5b7f383532db627e91165083be629f8fbd5b24cbb11f2e7f60d31302b1
name: gensoft-Porechop-0.2.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e3320a31c566
rpm_sourcerpm: gensoft-Porechop-0.2.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Porechop-0.2.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity.

description:
  a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity.


pkgId: e5929b8ed61b13fcc5eb6e83ace5ebf38e71830ac641c383405cdc123c2b9e55
name: gensoft-Porechop_ABI-0.5.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-Porechop_ABI-0.5.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Porechop_ABI-0.5.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Porechop_ABI (ab initio) is an extension of Porechop whose purpose is to process adapter sequences in ONT reads.

description:
  Porechop_ABI (ab initio) is an extension of Porechop whose purpose is to process adapter sequences in ONT reads.


pkgId: 40d422bc1bef18ea90ace32e0456da0ce68d87795249fded05f137c1c9fe1d43
name: gensoft-ProtTest-2.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 063fc9b3c3c6
rpm_sourcerpm: gensoft-ProtTest-2.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ProtTest-2.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PROTTEST (ModelTest relative) is a program based on Phyml for selecting the model of protein evolution that best fits a given set of sequences (alignment).

description:
  PROTTEST (ModelTest relative) is a program based on Phyml for selecting the model of protein evolution that best fits a given set of sequences (alignment).


pkgId: 6703c9d7865419031898a71762d30f96f9b89e11bbfab5336eebd1bce4c7fd28
name: gensoft-ProteoWizard-3.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build2
rpm_sourcerpm: gensoft-ProteoWizard-3.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ProteoWizard-3.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ProteoWizard provides a set of open-source, cross-platform software libraries and tools that facilitate proteomics data analysis.

description:
  ProteoWizard provides a set of open-source, cross-platform software libraries and tools that facilitate proteomics data analysis.


pkgId: c9ae8c776afd90486b447c688842ddf354e85d5ae542b40fe132a5037379361e
name: gensoft-Quake-0.3.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 118e6ef84917
rpm_sourcerpm: gensoft-Quake-0.3.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Quake-0.3.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a package to correct substitution sequencing errors in experiments with deep coverage (e.g. >15X), specifically intended for Illumina sequencing reads. Quake adopts the k-mer error correction framework, first introduced by the EULER genome assembly package.

description:
  a package to correct substitution sequencing errors in experiments with deep coverage (e.g. >15X), specifically intended for Illumina sequencing reads. Quake adopts the k-mer error correction framework, first introduced by the EULER genome assembly package.


pkgId: 6236f42d9e3642f58cda3089e7af55cda07384f52ce7f33a9fd210930e2bebc6
name: gensoft-RAiSD-2.9
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: RAiSD
rpm_sourcerpm: gensoft-RAiSD-2.9-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-RAiSD-2.9-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  RAiSD (Raised Accuracy in Sweep Detection) is a stand-alone software implementation of the statistic for selective sweep detection

description:
  RAiSD (Raised Accuracy in Sweep Detection) is a stand-alone software implementation of the statistic for selective sweep detection


pkgId: a189fa6965142f387376315aeb3ccac614e4c133655799c3250cc889a5773b5c
name: gensoft-RAxML-8.2.12
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d37d6d8659e6
rpm_sourcerpm: gensoft-RAxML-8.2.12-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-RAxML-8.2.12-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees (SSE3 version without Pthreads)

description:
  A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees (SSE3 version without Pthreads)


pkgId: 618a6627f3e3cc93f0037aca5e1d550dfeee7d3a44cfb51f79296d30d2a3984c
name: gensoft-RDPTools-2.0.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 80c1ab356e1d
rpm_sourcerpm: gensoft-RDPTools-2.0.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-RDPTools-2.0.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  RDP provides quality-controlled, aligned and annotated Bacterial and Archaeal 16S rRNA sequences, and Fungal 28S rRNA sequences, and a suite of analysis tools (Classifier, Clustering, SequenceMatch, ProbeMatch, InitialProcessing, FrameBot, ReadSeq) to the scientific community.

description:
  RDP provides quality-controlled, aligned and annotated Bacterial and Archaeal 16S rRNA sequences, and Fungal 28S rRNA sequences, and a suite of analysis tools (Classifier, Clustering, SequenceMatch, ProbeMatch, InitialProcessing, FrameBot, ReadSeq) to the scientific community.


pkgId: bccc140fed2d5e5d30d6abbcc6a578683910e532f6775121c00e251b46c80355
name: gensoft-REQ-1.3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-REQ-1.3-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-REQ-1.3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  estimate the rate of elementary quartets (REQ) for each internal branch of a phylogenetic tree from a distance matrix

description:
  estimate the rate of elementary quartets (REQ) for each internal branch of a phylogenetic tree from a distance matrix


pkgId: a35b8890811f2a13b69b89ad95b9a065c92934325bec4bda7be44812be3fa199
name: gensoft-RGT-0.13.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a84d99062846
rpm_sourcerpm: gensoft-RGT-0.13.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-RGT-0.13.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  RGT is an open source Python 3.6+ library for analysis of regulatory genomics. RGT is programmed in an oriented object fashion and its core classes provide functionality for handling regulatory genomics data.

description:
  RGT is an open source Python 3.6+ library for analysis of regulatory genomics. RGT is programmed in an oriented object fashion and its core classes provide functionality for handling regulatory genomics data.


pkgId: 2e6b90fd52379f562385fcc32f4eec39e4936b5053e720bc4de2bc3ab052c1db
name: gensoft-RNA-SeQC-1.1.8
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b4242379bad7
rpm_sourcerpm: gensoft-RNA-SeQC-1.1.8-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-RNA-SeQC-1.1.8-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  RNA-SeQC is a java program which computes a series of quality control metrics for RNA-seq data. The input can be one or more BAM files. The output consists of HTML reports and tab delimited files of metrics data. This program can be valuable for comparing sequencing quality across different samples or experiments to evaluate different experimental parameters. It can also be run on individual samples as a means of quality control before continuing with downstream analysis.

description:
  RNA-SeQC is a java program which computes a series of quality control metrics for RNA-seq data. The input can be one or more BAM files. The output consists of HTML reports and tab delimited files of metrics data. This program can be valuable for comparing sequencing quality across different samples or experiments to evaluate different experimental parameters. It can also be run on individual samples as a means of quality control before continuing with downstream analysis.


pkgId: e4684d4a1ea5e4fae3db4f6f6663ac58fbf0a35ac9abc58d12dd1baca57187b0
name: gensoft-RNAstructure-6.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-RNAstructure-6.2-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-RNAstructure-6.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis. It includes algorithms for secondary structure prediction, including facility to predict base pairing probabilities. It also can be used to predict bimolecular structures and can predict the equilibrium binding affinity of an oligonucleotide to a structured RNA target. This is useful for siRNA design. It can also predict secondary structures common to two, unaligned sequences, which is much more accurate than single sequence secondary structure prediction. Finally, RNAstructure can take a number of different types of experiment mapping data to constrain or restrain structure prediction. These include chemical mapping, enzymatic mapping, NMR, and SHAPE data.

description:
  RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis. It includes algorithms for secondary structure prediction, including facility to predict base pairing probabilities. It also can be used to predict bimolecular structures and can predict the equilibrium binding affinity of an oligonucleotide to a structured RNA target. This is useful for siRNA design. It can also predict secondary structures common to two, unaligned sequences, which is much more accurate than single sequence secondary structure prediction. Finally, RNAstructure can take a number of different types of experiment mapping data to constrain or restrain structure prediction. These include chemical mapping, enzymatic mapping, NMR, and SHAPE data.


pkgId: e1aed57e51782b5d0004ec3212e8cab4a0b5a5026ee199c5e06c21a1d361992f
name: gensoft-ROCK-1.9.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-ROCK-1.9.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ROCK-1.9.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ROCK (Reducing Over-Covering K-mers) is a command line program written in C++ that runs an alternative implementation of the digital normalization method (e.g. Brown et al. 2012, Wedemeyer et al. 2017, Durai and Schulz 2019).

description:
  ROCK (Reducing Over-Covering K-mers) is a command line program written in C++ that runs an alternative implementation of the digital normalization method (e.g. Brown et al. 2012, Wedemeyer et al. 2017, Durai and Schulz 2019).


pkgId: 7ab9cecd911fb23cd3f3bdff7d128e8c7a1d9c60de68e5cfa4bdb214c1a90151
name: gensoft-RSEM-1.3.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: fb3014bed0e1
rpm_sourcerpm: gensoft-RSEM-1.3.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-RSEM-1.3.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides an user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation.

description:
  RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides an user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation.


pkgId: c2d99a2a5fd55967ee63f8d0b910ac1333d7dad700583067d16a6ba349f8dbd0
name: gensoft-RSeQC-3.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-RSeQC-3.0.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-RSeQC-3.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Deep transcriptome sequencing (RNA-seq) provides massive and valuable information of transcribed regions in the genome. Ideally, RNA-seq should be able to directly identify and quantify all RNA species, small or large, low or high abundance. However, RNA-seq is a complicated, multiple step process involving sample preparation, amplification, fragmentation, purification and sequencing. A single improper operation would result in biased or even unusable data. Therefore, it is always a good practice to check the quality of your RNA-seq data before analysis. Here we developed RSeQC package to comprehensively evaluate RNA-seq datasets generated from human or other well annotated model organisms such as mouse, fly, zebrafish, etc.

description:
  Deep transcriptome sequencing (RNA-seq) provides massive and valuable information of transcribed regions in the genome. Ideally, RNA-seq should be able to directly identify and quantify all RNA species, small or large, low or high abundance. However, RNA-seq is a complicated, multiple step process involving sample preparation, amplification, fragmentation, purification and sequencing. A single improper operation would result in biased or even unusable data. Therefore, it is always a good practice to check the quality of your RNA-seq data before analysis. Here we developed RSeQC package to comprehensively evaluate RNA-seq datasets generated from human or other well annotated model organisms such as mouse, fly, zebrafish, etc.


pkgId: 401a0c7a56fb6757d447524d71c6cf960c59d2843dc617c7b4730365d06e0b48
name: gensoft-Ragout-2.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e310577be84e
rpm_sourcerpm: gensoft-Ragout-2.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Ragout-2.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references.

description:
  Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references.


pkgId: 12fccd062852281e749dd11077b51a3b8d85a50e0f904afd1c69b993b59135d9
name: gensoft-RealPhy-1.12
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c1d92d0e1694
rpm_sourcerpm: gensoft-RealPhy-1.12-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-RealPhy-1.12-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The Reference sequence Alignment based Phylogeny builder is a free pipeline that can infer phylogenetic trees from whole genome sequence data

description:
  The Reference sequence Alignment based Phylogeny builder is a free pipeline that can infer phylogenetic trees from whole genome sequence data


pkgId: 11c679af340f2edacb2c522c4141e3c0d09716fad8ce3b8d06b65ee0a25b7dbf
name: gensoft-Reapr-1.0.18
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3463bfe24982
rpm_sourcerpm: gensoft-Reapr-1.0.18-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-Reapr-1.0.18-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Recognising Errors in Assemblies using Paired Reads. A tool that evaluates the accuracy of a genome assembly using mapped paired end reads.

description:
  Recognising Errors in Assemblies using Paired Reads. A tool that evaluates the accuracy of a genome assembly using mapped paired end reads.


pkgId: 262d48fd995baf334125b24fba82aaaa4bb8470e20f57c0a905a974332da0347
name: gensoft-Recycler-0.7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-Recycler-0.7-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Recycler-0.7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Recycler is a tool designed for extracting circular sequences from de novo assembly graphs. It can be applied on isolate as well as metagenome and plasmidome data. The circular sequences it outputs may be plasmids, phages, etc. Recycler uses only features of the assembly graph (contig overlaps, lengths, and coverage level information) and alignments of paired-end reads to the contigs in the graph in order to identify these sequences.

description:
  Recycler is a tool designed for extracting circular sequences from de novo assembly graphs. It can be applied on isolate as well as metagenome and plasmidome data. The circular sequences it outputs may be plasmids, phages, etc. Recycler uses only features of the assembly graph (contig overlaps, lengths, and coverage level information) and alignments of paired-end reads to the contigs in the graph in order to identify these sequences.


pkgId: 22d5be32f203c43df3dec9e6d09f55d74367d3cce4af689001e41f8fbf4d0b0a
name: gensoft-RepeatMasker-4.1.0
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-RepeatMasker-4.1.0-4.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-RepeatMasker-4.1.0-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default replaced by Ns). Currently over 56% of human genomic sequence is identified and masked by the program. Sequence comparisons in RepeatMasker are performed by one of several popular search engines including nhmmer, cross_match, ABBlast/WUBlast, RMBlast and Decypher. RepeatMasker makes use of curated libraries of repeats and currently supports Dfam ( profile HMM library derived from Repbase sequences ) and Repbase, a service of the Genetic Information Research Institute. The program is installed with a full version of the repeat library DFAM Library Version = Dfam_2.0, RMLibrary Version = 20150807, Repbase Version = 20150807. RepeatMasker is intalled with crossmatch, rmblast, hmmer support for search engine (rmblast is the default)

description:
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default replaced by Ns). Currently over 56% of human genomic sequence is identified and masked by the program. Sequence comparisons in RepeatMasker are performed by one of several popular search engines including nhmmer, cross_match, ABBlast/WUBlast, RMBlast and Decypher. RepeatMasker makes use of curated libraries of repeats and currently supports Dfam ( profile HMM library derived from Repbase sequences ) and Repbase, a service of the Genetic Information Research Institute. The program is installed with a full version of the repeat library DFAM Library Version = Dfam_2.0, RMLibrary Version = 20150807, Repbase Version = 20150807. RepeatMasker is intalled with crossmatch, rmblast, hmmer support for search engine (rmblast is the default)


pkgId: 833c9e29a0e97ba9d92f42d9cdf80223dbdf66a2b9cefd75af47659a4687ed9f
name: gensoft-ReporTree-1.0.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c1d92d0e1694
rpm_sourcerpm: gensoft-ReporTree-1.0.0-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-ReporTree-1.0.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data

description:
  A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data


pkgId: d91e5678727c909fe16aa49e099cfb8827486dcbeca41e9314864859090d0a8d
name: gensoft-ResMap-1.1.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5da0a8c17d90
rpm_sourcerpm: gensoft-ResMap-1.1.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ResMap-1.1.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software package for computing the local resolutionof 3D density maps studied in structural biology, primarily electron cryo-microscopy (cryo-EM).

description:
  a software package for computing the local resolutionof 3D density maps studied in structural biology, primarily electron cryo-microscopy (cryo-EM).


pkgId: 4c7c67ff8695a8d05725e71fdafc3a197d2498ee2a4db31d7b120578793d3743
name: gensoft-RiboDetector-0.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-RiboDetector-0.3.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-RiboDetector-0.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  accurately yet rapidly detect and remove rRNA sequences from metagenomeic, metatranscriptomic, and ncRNA sequencing data

description:
  accurately yet rapidly detect and remove rRNA sequences from metagenomeic, metatranscriptomic, and ncRNA sequencing data


pkgId: 6d4f2e3e9b2b88c1983c2b26f4073bbafa3322bee1d537439b51726ca99df063
name: gensoft-Roary-3.13.0
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 83f8212e98cd
rpm_sourcerpm: gensoft-Roary-3.13.0-4.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-Roary-3.13.0-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka) and calculates the pan genome.

description:
  Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka) and calculates the pan genome.


pkgId: 7537fcb0a5948b2a9a6ff6b9945f19aa971dbf452d0711e3795d27918817b957
name: gensoft-RoseTTAFold-1.0.0
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-RoseTTAFold-1.0.0-4.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-RoseTTAFold-1.0.0-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  official implementation of RoseTTAFold - Accurate prediction of protein structures and interactions using a 3-track network.

description:
  official implementation of RoseTTAFold - Accurate prediction of protein structures and interactions using a 3-track network.


pkgId: 069f6236d472f866a750a062172279cc5a152ce1375570f9ee5c9765f75c0abb
name: gensoft-SARTools-1.7.2
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-SARTools-1.7.2-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-SARTools-1.7.2-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Statistical Analysis of RNA-Seq Tools. SARTools provides R tools and an environment for the statistical analysis of RNA-Seq projects load and clean data, produce figures, perform statistical analysis/testing with DESeq2 or edgeR, export results and create final report

description:
  Statistical Analysis of RNA-Seq Tools. SARTools provides R tools and an environment for the statistical analysis of RNA-Seq projects load and clean data, produce figures, perform statistical analysis/testing with DESeq2 or edgeR, export results and create final report


pkgId: a0fc1239108f48123a2d73958e309dedb9d0031937cefa50298ab92390f3903b
name: gensoft-SDL-2.0.12
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 22e5630b34ad
rpm_sourcerpm: gensoft-SDL-2.0.12-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SDL-2.0.12-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Simple DirectMedia Layer is a cross-platform development library designed to provide low level access to audio, keyboard, mouse, joystick, and graphics hardware via OpenGL and Direct3D.

description:
  Simple DirectMedia Layer is a cross-platform development library designed to provide low level access to audio, keyboard, mouse, joystick, and graphics hardware via OpenGL and Direct3D.


pkgId: d3747593ac09f62a644025d08fc283d159a4ba3613035248981c19fe38611bbe
name: gensoft-SHRiMP-2.2.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: bab853910799
rpm_sourcerpm: gensoft-SHRiMP-2.2.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SHRiMP-2.2.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem s colourspace genomic representation.

description:
  a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem s colourspace genomic representation.


pkgId: ac445cae32bdc6eb47a6da4fe93a6783fd35af2dfe12e349f0d09ad7e127e216
name: gensoft-SICER-1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-SICER-1.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SICER-1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

description:
  A clustering approach for identification of enriched domains from histone modification ChIP-Seq data


pkgId: 5973b286956eae8675269f9eaf156df3665c280573cbd49e6f0c1f449b3d0161
name: gensoft-SKA-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a8f4bee66954
rpm_sourcerpm: gensoft-SKA-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SKA-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other small, haploid) DNA sequence analysis using split kmers

description:
  SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other small, haploid) DNA sequence analysis using split kmers


pkgId: 14f26f81428de555f450931f9e880e5b5b9b8d41c1249eced8dc21a6a2daa651
name: gensoft-SKA2-0.4.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-SKA2-0.4.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-SKA2-0.4.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Split k-mer analysis version 2 is a reimplementation of the SKA package in the rust language. SKA2 uses exact matching of split k-mer sequences to align closely related sequences, typically small haploid genomes such as bacteria and viruses

description:
  Split k-mer analysis version 2 is a reimplementation of the SKA package in the rust language. SKA2 uses exact matching of split k-mer sequences to align closely related sequences, typically small haploid genomes such as bacteria and viruses


pkgId: 612a6eca9e1f5e389566f6c6c5a2e707d57f2351156d965fbcd711d9fba7e1b0
name: gensoft-SKESA-2.3.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 6f9dbe1433db
rpm_sourcerpm: gensoft-SKESA-2.3.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SKESA-2.3.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SKESA is a de-novo sequence read assembler for microbial genomes based on DeBruijn graphs. It uses conservative heuristics and is designed to create breaks at repeat regions in the genome. This leads to excellent sequence quality. Using kmers longer than mate length and up to insert size also allows SKESA to attain good contiguity as determined by the N50 statistic. It is a multi-threaded application that scales well with the number of processors. For different runs with the same inputs, including the order of reads, the order and orientation of contigs in the output is deterministic.

description:
  SKESA is a de-novo sequence read assembler for microbial genomes based on DeBruijn graphs. It uses conservative heuristics and is designed to create breaks at repeat regions in the genome. This leads to excellent sequence quality. Using kmers longer than mate length and up to insert size also allows SKESA to attain good contiguity as determined by the N50 statistic. It is a multi-threaded application that scales well with the number of processors. For different runs with the same inputs, including the order of reads, the order and orientation of contigs in the output is deterministic.


pkgId: 3fc9e713489f5591cb1af8c43699789cc5b7e55968130dbd0a9ed2f0c49d7a65
name: gensoft-SLiM-3.3.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 04e318ef2375
rpm_sourcerpm: gensoft-SLiM-3.3.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SLiM-3.3.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SLiM (Selection on Linked Mutations) is an evolutionary simulation package that provides facilities for very easily and quickly constructing genetically explicit individual-based evolutionary models.

description:
  SLiM (Selection on Linked Mutations) is an evolutionary simulation package that provides facilities for very easily and quickly constructing genetically explicit individual-based evolutionary models.


pkgId: 9c4dcd3158f44bbb521b23af730f5107f181b8959a37f15c70b0bc4bebdf0d42
name: gensoft-SLiPP-2024
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build2
rpm_sourcerpm: gensoft-SLiPP-2024-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-SLiPP-2024-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  extracts pocket information from given protein models and predict the possibility of the pocket being lipid-binding pockets through machine learning.

description:
  extracts pocket information from given protein models and predict the possibility of the pocket being lipid-binding pockets through machine learning.


pkgId: 4a93da97811775f14c62331658c610ecd67e2b48d81608b25636a1f8de606561
name: gensoft-SMRT-Link-25.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: smrtlink
rpm_sourcerpm: gensoft-SMRT-Link-25.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-SMRT-Link-25.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  PacBios open-source SMRT Analysis software suite is designed for use with Single Molecule, Real-Time (SMRT) Sequencing data. You can analyze, visualize, and manage your data through an intuitive GUI or command-line interface. You can also integrate SMRT Analysis in your existing data workflow through the extensive set of APIs provided

description:
  PacBios open-source SMRT Analysis software suite is designed for use with Single Molecule, Real-Time (SMRT) Sequencing data. You can analyze, visualize, and manage your data through an intuitive GUI or command-line interface. You can also integrate SMRT Analysis in your existing data workflow through the extensive set of APIs provided


pkgId: 35ac3a36cc84c706dab742fa1b0d777a443992280318276e0eccd6e3119e26dc
name: gensoft-SNP2HLA-v1.0.3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 39014f25c518
rpm_sourcerpm: gensoft-SNP2HLA-v1.0.3-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-SNP2HLA-v1.0.3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  tool to impute amino acid polymorphisms and single nucleotide polymorphisms in human luekocyte antigenes (HLA) within the major histocompatibility complex (MHC) region in chromosome 6.

description:
  tool to impute amino acid polymorphisms and single nucleotide polymorphisms in human luekocyte antigenes (HLA) within the major histocompatibility complex (MHC) region in chromosome 6.


pkgId: e64a5a4c89c77552ddb96df38c56f91af1cedf100b4d36933c388b2163ba712c
name: gensoft-SNPPar-1.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: builder
rpm_sourcerpm: gensoft-SNPPar-1.2-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-SNPPar-1.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SNPPar is designed to find homoplasic SNPs based on a user-defined phylogenetic tree - more specifically, it searches for those SNPs that are parallel - same mutation (eg. A ~> T) @ same position in two (or more) unrelated groups/isolates, convergent - different mutation in resulting in same base (eg. A ~> T, C ~> T) @ same position in two (or more) unrelated groups/isolates, and/or revertant - mutation back to ancestral state (eg. A ~> T ~> A)

description:
  SNPPar is designed to find homoplasic SNPs based on a user-defined phylogenetic tree - more specifically, it searches for those SNPs that are parallel - same mutation (eg. A ~> T) @ same position in two (or more) unrelated groups/isolates, convergent - different mutation in resulting in same base (eg. A ~> T, C ~> T) @ same position in two (or more) unrelated groups/isolates, and/or revertant - mutation back to ancestral state (eg. A ~> T ~> A)


pkgId: ed13aef8dc90ecc6158571561c91ebb5698124734c050f63ef069e9715421aef
name: gensoft-SQLite-3.31.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-SQLite-3.31.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SQLite-3.31.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SQLite is an in-process library that implements a self-contained, serverless, zero-configuration, transactional SQL database engine.

description:
  SQLite is an in-process library that implements a self-contained, serverless, zero-configuration, transactional SQL database engine.


pkgId: c27fc61e72a1b4adac64c4303f484fbcc79e6f3ea023bac451a3ffe0517f8d31
name: gensoft-STEME-1.9.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7cc0e439b9c2
rpm_sourcerpm: gensoft-STEME-1.9.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-STEME-1.9.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  STEME started life as an approximation to the Expectation-Maximisation algorithm for the type of model used in motif finders such as MEME. STEME s EM approximation runs an order of magnitude more quickly than the MEME implementation for typical parameter settings. STEME has now developed into a fully-fledged motif finder in its own right.

description:
  STEME started life as an approximation to the Expectation-Maximisation algorithm for the type of model used in motif finders such as MEME. STEME s EM approximation runs an order of magnitude more quickly than the MEME implementation for typical parameter settings. STEME has now developed into a fully-fledged motif finder in its own right.


pkgId: f5e715d8d08bf6bea1f94306ef3918de936763d078930ba2f81af33f75244b5f
name: gensoft-SVclone-0.4.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 01105c4c47a5
rpm_sourcerpm: gensoft-SVclone-0.4.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SVclone-0.4.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.

description:
  A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.


pkgId: 52566c1534619e9d4174adb58dca74ba8ce19d233de95518eed6278b35763fb3
name: gensoft-SVseq2-2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5fad80f46a7e
rpm_sourcerpm: gensoft-SVseq2-2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SVseq2-2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data.

description:
  An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data.


pkgId: 20f506cbef800279adb0549bb96df9876a0b68f7b85f6288763e5054079bedc6
name: gensoft-SYMPHONY-5.6.17
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9ce970a23518
rpm_sourcerpm: gensoft-SYMPHONY-5.6.17-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SYMPHONY-5.6.17-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SYMPHONY is an open-source solver, callable library, and development framework for mixed-integer linear programs (MILPs) written in C with a number of unique features

description:
  SYMPHONY is an open-source solver, callable library, and development framework for mixed-integer linear programs (MILPs) written in C with a number of unique features


pkgId: 61e5f9c82453d943ee41a00e1f3b48b1da366ff833fc2abf7f02fef740bb9f0c
name: gensoft-Scoary-1.6.16
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ac6301948576
rpm_sourcerpm: gensoft-Scoary-1.6.16-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Scoary-1.6.16-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Pan-genome wide association studies. Scoary is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the assocations between all genes in the accessory genome (all genes that are present in i genomes where 1 < i < N) and the traits. Scoary reports a list of genes sorted by strength of association per trait.

description:
  Pan-genome wide association studies. Scoary is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the assocations between all genes in the accessory genome (all genes that are present in i genomes where 1 < i < N) and the traits. Scoary reports a list of genes sorted by strength of association per trait.


pkgId: 6e414a47421019a445d9a1914cbccc46a6595d7146b9e46598a4b57cdd209448
name: gensoft-Score-P-6.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 136feaa901f8
rpm_sourcerpm: gensoft-Score-P-6.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Score-P-6.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Scalable Performance Measurement Infrastructure for Parallel Codes. The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.

description:
  Scalable Performance Measurement Infrastructure for Parallel Codes. The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.


pkgId: f3e03e9f41f430c20bbf767f7c75fc320677ac19abfc5212f055d698e8ba0dbb
name: gensoft-SeqPrep-1.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 60a0e08f1587
rpm_sourcerpm: gensoft-SeqPrep-1.2-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-SeqPrep-1.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a program to merge paired end Illumina reads that are overlapping into a single longer read. It may also just be used for its adapter trimming feature without doing any paired end overlap.

description:
  a program to merge paired end Illumina reads that are overlapping into a single longer read. It may also just be used for its adapter trimming feature without doing any paired end overlap.


pkgId: 8864012edceef54d0356ff24a5db0326edb5c0efa8faf349752cc57a80e556d2
name: gensoft-ShigEiFinder-1.2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d37d6d8659e6
rpm_sourcerpm: gensoft-ShigEiFinder-1.2.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ShigEiFinder-1.2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  identify differentiate Shigella/EIEC using cluster-specific genes and identify the serotype using O-antigen/H-antigen genes.

description:
  identify differentiate Shigella/EIEC using cluster-specific genes and identify the serotype using O-antigen/H-antigen genes.


pkgId: 41e47329a110a29bae37c479fdd276b9ecf3adbe4c5600a12057da6eef65e4c1
name: gensoft-Sibelia-3.0.7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 17e43e953009
rpm_sourcerpm: gensoft-Sibelia-3.0.7-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Sibelia-3.0.7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A comparative genomics tool  It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. PLEASE NOTE that Sibelai is currently installed without the variant annotation support

description:
  A comparative genomics tool  It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. PLEASE NOTE that Sibelai is currently installed without the variant annotation support


pkgId: 18d05954522b8377124b03e5a9c7be867a972c84a4de9bcc68fc41a1c2c3690d
name: gensoft-Sniffles-2.0.7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8d3d25229f0b
rpm_sourcerpm: gensoft-Sniffles-2.0.7-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Sniffles-2.0.7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A fast structural variant caller for long-read sequencing, Sniffles2 accurately detect SVs on germline, somatic and population-level for PacBio and Oxford Nanopore read data

description:
  A fast structural variant caller for long-read sequencing, Sniffles2 accurately detect SVs on germline, somatic and population-level for PacBio and Oxford Nanopore read data


pkgId: 70a88595b737662636f180bc24655a9da33a6017a2c9d21f86d75fb33ccc7bc3
name: gensoft-SoftSV-1.4.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7aa5883b5935
rpm_sourcerpm: gensoft-SoftSV-1.4.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SoftSV-1.4.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool for the detection of small and large deletions, inversions, tandem duplications and translocations from paired-end sequencing data. It uses aberrant paired-end mappings to determine approximative breakpoint regions and refines the breakpoints by analysing soft-clipped sequences for potential split-reads.

description:
  a tool for the detection of small and large deletions, inversions, tandem duplications and translocations from paired-end sequencing data. It uses aberrant paired-end mappings to determine approximative breakpoint regions and refines the breakpoints by analysing soft-clipped sequences for potential split-reads.


pkgId: b486e4cfe684567936881542ea3c9630d07296323129fc91c38a168b27242d1f
name: gensoft-Sphinx-2.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 4c1845721240
rpm_sourcerpm: gensoft-Sphinx-2.3.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Sphinx-2.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Sphinx is a tool that makes it easy to create intelligent and beautiful documentation for Python projects

description:
  Sphinx is a tool that makes it easy to create intelligent and beautiful documentation for Python projects


pkgId: 0445041098ba2e577c59332a8bb579ee2b59212e244c96f0ca36214a37cdc801
name: gensoft-SpreaD3-0.9.6
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 39014f25c518
rpm_sourcerpm: gensoft-SpreaD3-0.9.6-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-SpreaD3-0.9.6-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a user-friendly application to analyze and visualize pathogen phylodynamic reconstructions resulting from Bayesian inference of sequence and trait evolutionary processes.

description:
  a user-friendly application to analyze and visualize pathogen phylodynamic reconstructions resulting from Bayesian inference of sequence and trait evolutionary processes.


pkgId: de029f36ffb9e9e490d5d0f2949cbdd88b2ad83f15e3dbf13ad8409fb1ff88a7
name: gensoft-SuiteSparse-5.6.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-SuiteSparse-5.6.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-SuiteSparse-5.6.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SuiteSparse is a suite of sparse matrix algorithms, including UMFPACK multifrontal LU factorization.  CHOLMOD supernodal Cholesky. SPQR multifrontal QR.  KLU and BTF  sparse LU factorization, well-suited for circuit simulation.  Ordering methods (AMD, CAMD, COLAMD, and CCOLAMD). CSparse and CXSparse a concise sparse Cholesky factorization package for my SIAM book. UFget a MATLAB interface for the UF Sparse Matrix Collection spqr_rank a MATLAB package for reliable sparse rank detection, null set bases, pseudoinverse solutions, and basic solutions.  Factorize an object-oriented solver for MATLAB (a reusable backslash). SSMULT and SFMULT sparse matrix multiplication. And many other packages

description:
  SuiteSparse is a suite of sparse matrix algorithms, including UMFPACK multifrontal LU factorization.  CHOLMOD supernodal Cholesky. SPQR multifrontal QR.  KLU and BTF  sparse LU factorization, well-suited for circuit simulation.  Ordering methods (AMD, CAMD, COLAMD, and CCOLAMD). CSparse and CXSparse a concise sparse Cholesky factorization package for my SIAM book. UFget a MATLAB interface for the UF Sparse Matrix Collection spqr_rank a MATLAB package for reliable sparse rank detection, null set bases, pseudoinverse solutions, and basic solutions.  Factorize an object-oriented solver for MATLAB (a reusable backslash). SSMULT and SFMULT sparse matrix multiplication. And many other packages


pkgId: 6dc8c629fe03eddc716986b805287a421fab4511eb3ff3910e64d894913e4fe5
name: gensoft-Superfold-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b0163ef82ab0
rpm_sourcerpm: gensoft-Superfold-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Superfold-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SuperFold is a pipeline that then uses these data to model RNA secondary structures, including pseudoknots; identify de novo regions with well-defined and stable structures; and visualize most probable and alternative helices.

description:
  SuperFold is a pipeline that then uses these data to model RNA secondary structures, including pseudoknots; identify de novo regions with well-defined and stable structures; and visualize most probable and alternative helices.


pkgId: a00259d13f50f09558fad6152929ccfe32048396a2817da7aa23e2c718fb5b66
name: gensoft-SweeD-4.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 82b357152627
rpm_sourcerpm: gensoft-SweeD-4.0.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-SweeD-4.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  SweeD implements a composite likelihood ratio test which detects complete selective sweeps using Site Frequency Spectrum (SFS) patterns of single-nucleotide polymorphisms (SNPs).

description:
  SweeD implements a composite likelihood ratio test which detects complete selective sweeps using Site Frequency Spectrum (SFS) patterns of single-nucleotide polymorphisms (SNPs).


pkgId: 2336e3e841789cc06104404f63abea5c903c16b2a598fb6c9d68073fe0f80544
name: gensoft-T4SEfinder-1.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-T4SEfinder-1.0.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-T4SEfinder-1.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  T4SEfinder - A Genome-scale Annotation Tool for Bacterial Type IV Secretion System Effectors (T4SEs) Using Pre-trained Model.

description:
  T4SEfinder - A Genome-scale Annotation Tool for Bacterial Type IV Secretion System Effectors (T4SEs) Using Pre-trained Model.


pkgId: 77cb554c62a32b3f79b6a78d2cae2035de9c679bb5ee4843f77e42db4e3788b8
name: gensoft-TCellRacer-0.6.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ab4098a0a235
rpm_sourcerpm: gensoft-TCellRacer-0.6.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-TCellRacer-0.6.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  This tool reconstructs the sequences of rearranged and expressed T cell receptor genes from single-cell RNA-seq data. It then uses the TCR sequences to identify cells that have the same receptor sequences and so derive from the same original clonally-expanded cell.

description:
  This tool reconstructs the sequences of rearranged and expressed T cell receptor genes from single-cell RNA-seq data. It then uses the TCR sequences to identify cells that have the same receptor sequences and so derive from the same original clonally-expanded cell.


pkgId: f853848ce59c47170adb70e3a54fac677149d6da5b1dfdcf9c78266022bef0fc
name: gensoft-TEtranscripts-2.2.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d96e44c698fb
rpm_sourcerpm: gensoft-TEtranscripts-2.2.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-TEtranscripts-2.2.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A package for including transposable elements in differential enrichment analysis of sequencing datasets

description:
  A package for including transposable elements in differential enrichment analysis of sequencing datasets


pkgId: b6f63bcfdb946912514bddb72f376e3beb05b0a0283735de3d66986238390a47
name: gensoft-TM-align-20170708
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8f45e8dd55de
rpm_sourcerpm: gensoft-TM-align-20170708-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-TM-align-20170708-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  TM-align is an algorithm for sequence independent protein structure comparisons. For two protein structures of unknown equivalence

description:
  TM-align is an algorithm for sequence independent protein structure comparisons. For two protein structures of unknown equivalence


pkgId: 651d724a01335c42d95555d49e1667de7debf2c15fa19cf9c5bdf83f6a675916
name: gensoft-TNT-1.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d06ff5eff140
rpm_sourcerpm: gensoft-TNT-1.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-TNT-1.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  TNT stands for (Tree analysis using New Technology). It is a program for phylogenetic analysis under parsimony (with very fast tree-searching algorithms as well as extensive tree handling and diagnosis capabilities

description:
  TNT stands for (Tree analysis using New Technology). It is a program for phylogenetic analysis under parsimony (with very fast tree-searching algorithms as well as extensive tree handling and diagnosis capabilities


pkgId: 3cd97cb01c5f1a1561cc04f8c331d027de5a6ec80b07c81566c1403efe88a811
name: gensoft-TemStaPro-0.2.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker2
rpm_sourcerpm: gensoft-TemStaPro-0.2.6-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-TemStaPro-0.2.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a program for protein thermostability prediction using sequence representations from a protein language model.

description:
  a program for protein thermostability prediction using sequence representations from a protein language model.


pkgId: 94a61b06907ef5d65a80ce0e49d19e9298fb24fc185797eff37ca37c64cbe97b
name: gensoft-Tracer-v1.7.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 39014f25c518
rpm_sourcerpm: gensoft-Tracer-v1.7.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Tracer-v1.7.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Tracer a program for analysing the trace files generated by Bayesian MCMC runs. It can be used to analyse runs of BEAST, MrBayes, LAMARC and possibly other MCMC programs.

description:
  Tracer a program for analysing the trace files generated by Bayesian MCMC runs. It can be used to analyse runs of BEAST, MrBayes, LAMARC and possibly other MCMC programs.


pkgId: 6960a654ba019c7f2f72379dca084923fbdaba52c26338947c31dbcb4f5aab28
name: gensoft-TransDecoder-5.5.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-TransDecoder-5.5.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-TransDecoder-5.5.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

description:
  TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.


pkgId: 12cf20b60a86654c3562bf0aa3e89346b470bcd6451804949c392c7f1b6e6182
name: gensoft-TreeCluster-1.0.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d0aea0071dc0
rpm_sourcerpm: gensoft-TreeCluster-1.0.3-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-TreeCluster-1.0.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  TreeCluster is a tool that, given a tree T (Newick format) and a distance threshold t, finds the minimum number of clusters of the leaves of T such that some user-specified constraint is met in each cluster.

description:
  TreeCluster is a tool that, given a tree T (Newick format) and a distance threshold t, finds the minimum number of clusters of the leaves of T such that some user-specified constraint is met in each cluster.


pkgId: 348856dfa19e2e4bb85083a6ff7768209211d4d0daa8eddc24d85cec336236da
name: gensoft-TrimGalore-0.6.6
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-TrimGalore-0.6.6-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-TrimGalore-0.6.6-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data.

description:
  a wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data.


pkgId: d5907f6058baa8639995b18b86f78f2696e85650eb8a4b1b7b89503d3e6de718
name: gensoft-UPIMAPI-1.13.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-UPIMAPI-1.13.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-UPIMAPI-1.13.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a command line interface for using UniProt API, which allows to access UniProt ID mapping programmatically

description:
  a command line interface for using UniProt API, which allows to access UniProt ID mapping programmatically


pkgId: 91a5fc692908c946504ba289bada97af94da0e9a0d03c0c0c77b045346dff3b7
name: gensoft-Unicycler-0.4.8
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-Unicycler-0.4.8-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-Unicycler-0.4.8-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.

description:
  Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.


pkgId: 5c0eb6d6b884a81c14ef772d14d3fe5863c20b46d3cd3173e9ba330e86649958
name: gensoft-VIBRANT-1.2.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-VIBRANT-1.2.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-VIBRANT-1.2.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool for automated recovery and annotation of bacterial and archaeal viruses, determination of genome completeness, and characterization of viral community function from metagenomic assemblies. VIBRANT uses neural networks of protein annotation signatures and genomic features to maximize identification of highly diverse partial or complete viral genomes as well as excise integrated proviruses.

description:
  a tool for automated recovery and annotation of bacterial and archaeal viruses, determination of genome completeness, and characterization of viral community function from metagenomic assemblies. VIBRANT uses neural networks of protein annotation signatures and genomic features to maximize identification of highly diverse partial or complete viral genomes as well as excise integrated proviruses.


pkgId: 90f64ad2965ba042498ec9b91a0ab962ce5af096805695de27c73f26a82b42ad
name: gensoft-VIRIDIC-1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0c47002539ff
rpm_sourcerpm: gensoft-VIRIDIC-1.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-VIRIDIC-1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.

description:
  VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.


pkgId: 0aa459dd52029858e025ef5d166be27d14c913ba6112ed4560c4ec4d0fa4910a
name: gensoft-VTK-8.2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-VTK-8.2.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-VTK-8.2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Visualization Toolkit (VTK) is open source software for manipulating and displaying scientific data. It comes with state-of-the-art tools for 3D rendering, a suite of widgets for 3D interaction, and extensive 2D plotting capability.

description:
  Visualization Toolkit (VTK) is open source software for manipulating and displaying scientific data. It comes with state-of-the-art tools for 3D rendering, a suite of widgets for 3D interaction, and extensive 2D plotting capability.


pkgId: 58360a649e23468e5258b8e5d1e9e8e7e218d44b133beb2292c5cc1a43c0d399
name: gensoft-VirtualGL-2.6.5
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-VirtualGL-2.6.5-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-VirtualGL-2.6.5-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  VirtualGL is an open source toolkit that gives any Unix or Linux remote display software the ability to run OpenGL applications with full 3D hardware acceleration.

description:
  VirtualGL is an open source toolkit that gives any Unix or Linux remote display software the ability to run OpenGL applications with full 3D hardware acceleration.


pkgId: 8cf33a080027520c6d79b2d3660d2fc4e96f5d5bf309bd9885318145677bb9fd
name: gensoft-VirulenceFinder-2.0.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0ce5b3a187fa
rpm_sourcerpm: gensoft-VirulenceFinder-2.0.4-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-VirulenceFinder-2.0.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  VirulenceFinder identifies virulence genes in total or partial sequenced isolates of bacteria - at the moment only E. coli, Enterococcus, S. aureus and Listeria are available.

description:
  VirulenceFinder identifies virulence genes in total or partial sequenced isolates of bacteria - at the moment only E. coli, Enterococcus, S. aureus and Listeria are available.


pkgId: 8eab83879ecda34834dcaef155d28d9ddd2923b4b7a08550759a5b8f9908c0ce
name: gensoft-Vol-1.5.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9ce970a23518
rpm_sourcerpm: gensoft-Vol-1.5.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-Vol-1.5.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Vol (Volume Algorithm) is an open-source implementation of a subgradient method that produces primal as well as dual solutions.

description:
  Vol (Volume Algorithm) is an open-source implementation of a subgradient method that produces primal as well as dual solutions.


pkgId: 54e4c449bbaab749f69c7630d74005e2656ac7252f24642cb43079f74554d440
name: gensoft-WiggleTools-1.2.11
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2facad2f380c
rpm_sourcerpm: gensoft-WiggleTools-1.2.11-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-WiggleTools-1.2.11-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The WiggleTools package allows genomewide data files to be manipulated as numerical functions, equipped with all the standard functional analysis operators (sum, product, product by a scalar, comparators), and derived statistics (mean, median, variance, stddev, t-test, Wilcoxon s rank sum test, etc).

description:
  The WiggleTools package allows genomewide data files to be manipulated as numerical functions, equipped with all the standard functional analysis operators (sum, product, product by a scalar, comparators), and derived statistics (mean, median, variance, stddev, t-test, Wilcoxon s rank sum test, etc).


pkgId: 334e24d5bdde112385ada4fe30971dc950b431b1787eabb06d21f7bafc0b6f4a
name: gensoft-WisecondorX-1.2.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-WisecondorX-1.2.5-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-WisecondorX-1.2.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  WisecondorX. An evolved (WISECONDOR WIthin-SamplE COpy Number aberration DetectOR) - Detect fetal trisomies and smaller CNV-s in a maternal plasma sample using whole-genome data.

description:
  WisecondorX. An evolved (WISECONDOR WIthin-SamplE COpy Number aberration DetectOR) - Detect fetal trisomies and smaller CNV-s in a maternal plasma sample using whole-genome data.


pkgId: b65184d67757bbcd5020cc57699eef3cdc087443d002c1f68c7663f99dcc016e
name: gensoft-aTRAM-2.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d06ff5eff140
rpm_sourcerpm: gensoft-aTRAM-2.3.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-aTRAM-2.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  aTRAM (automated target restricted assembly method) is an iterative assembler that performs reference-guided local de novo assemblies using a variety of available methods. It is well-suited to various tasks where Next-Generation Sequence (NGS) data needs to be queried for gene sequences, such as phylogenomics.

description:
  aTRAM (automated target restricted assembly method) is an iterative assembler that performs reference-guided local de novo assemblies using a variety of available methods. It is well-suited to various tasks where Next-Generation Sequence (NGS) data needs to be queried for gene sequences, such as phylogenomics.


pkgId: a696d805942bae193495832c5e69d7b2209a1381cfdb6fe7a3659ec0380384ca
name: gensoft-abPOA-1.2.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9570d0c9d01f
rpm_sourcerpm: gensoft-abPOA-1.2.5-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-abPOA-1.2.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph.

description:
  abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph.


pkgId: b49376f731786dcdd4e8f4d06749fab4072fa67ddd0a59e87556ca92c8795688
name: gensoft-abricate-0.9.9
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: adff4510243c
rpm_sourcerpm: gensoft-abricate-0.9.9-4.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-abricate-0.9.9-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Mass screening of contigs for antimicrobial resistance or virulence genes.  It comes bundled with multiple databases - Resfinder, CARD, ARG-ANNOT, NCBI BARRGD, NCBI, EcOH, PlasmidFinder and VFDB

description:
  Mass screening of contigs for antimicrobial resistance or virulence genes.  It comes bundled with multiple databases - Resfinder, CARD, ARG-ANNOT, NCBI BARRGD, NCBI, EcOH, PlasmidFinder and VFDB


pkgId: 9fea585d73a96a028591f52a15a4c1f75c69e40bd15c91b49a5a5181e941c164
name: gensoft-abseil-cpp-20200923.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-abseil-cpp-20200923.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-abseil-cpp-20200923.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Abseil is an open-source collection of C++ code (compliant to C++17) designed to augment the C++ standard library.

description:
  Abseil is an open-source collection of C++ code (compliant to C++17) designed to augment the C++ standard library.


pkgId: 585d1ec9326e777538ac6dc6c21a1c8c2254e2d19a20ed0526ebe9eb602bcdb9
name: gensoft-abundancebin-1.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 562394a841d6
rpm_sourcerpm: gensoft-abundancebin-1.0.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-abundancebin-1.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  AbundanceBin is an abundance-based tool for binning metagenomic sequences, such that the reads classified in a bin belong to species of identical or very similar abundances. AbundanceBin also gives estimations of species abundances and their genome sizes, two important characteristic parameters for a microbial community.

description:
  AbundanceBin is an abundance-based tool for binning metagenomic sequences, such that the reads classified in a bin belong to species of identical or very similar abundances. AbundanceBin also gives estimations of species abundances and their genome sizes, two important characteristic parameters for a microbial community.


pkgId: 696a24c55b102fc312474d3a4b3e77a5e37f8d5b08ec4ab8c1c8ef22f8c5fae0
name: gensoft-adapterremoval-2.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8f880be80700
rpm_sourcerpm: gensoft-adapterremoval-2.3.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-adapterremoval-2.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  AdapterRemoval searches for and removes adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3 prime end of reads following adapter removal. AdapterRemoval can analyze both single end and paired end data, and can be used to merge overlapping paired-ended reads into (longer) consensus sequences. Additionally, AdapterRemoval can construct a consensus adapter sequence for paired-ended reads, if which this information is not available

description:
  AdapterRemoval searches for and removes adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3 prime end of reads following adapter removal. AdapterRemoval can analyze both single end and paired end data, and can be used to merge overlapping paired-ended reads into (longer) consensus sequences. Additionally, AdapterRemoval can construct a consensus adapter sequence for paired-ended reads, if which this information is not available


pkgId: 95deb0187231b8062716b819cf5db406240a38108367e5893f4d1ae42cbafb49
name: gensoft-adm-apptainer-1.3.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-adm-apptainer-1.3.6-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-adm-apptainer-1.3.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control.

description:
  Singularity enables users to have full control of their environment. Singularity containers can be used to package entire scientific workflows, software and libraries, and even data. This means that you don t have to ask your cluster admin to install anything for you - you can put it in a Singularity container and run. Designed around the notion of extreme mobility of compute and reproducible science, Singularity enables users to have full control of their operating system environment. This means that a non-privileged user can swap out the operating system on the host for one they control.


pkgId: b68abcc9e0e12e3532e0b6bd2ef1febcc7af5a3e29b6308ad0fed5a7370e55c9
name: gensoft-alder-1.03
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a8950fb63778
rpm_sourcerpm: gensoft-alder-1.03-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-alder-1.03-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ALDER computes weighted LD decay curves, performs curve-fitting to infer admixture dates, and uses the results to test for admixture.

description:
  ALDER computes weighted LD decay curves, performs curve-fitting to infer admixture dates, and uses the results to test for admixture.


pkgId: a24b4101b2832546f5baa787861a02c64413865af2f58cdfdc30010460edf3ce
name: gensoft-alohomora-v0.36
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3463bfe24982
rpm_sourcerpm: gensoft-alohomora-v0.36-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-alohomora-v0.36-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  designed to facilitate genome-wide linkage studies performed with high-density single nucleotide polymorphism (SNP) marker panels such as the Affymetrix GeneChip Human Mapping 10K Array

description:
  designed to facilitate genome-wide linkage studies performed with high-density single nucleotide polymorphism (SNP) marker panels such as the Affymetrix GeneChip Human Mapping 10K Array


pkgId: 439cf9f1d6f1d94dc03200e50e869470ea7588255dd8cc7dec0b834c5899083c
name: gensoft-alsa-lib-1.2.1.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-alsa-lib-1.2.1.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-alsa-lib-1.2.1.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system.

description:
  The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system.


pkgId: 48547688532478c3a4753cf23bec2d76eba10f82217ea8620d5ab171f7b0a0cf
name: gensoft-amap-2.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 6816262861fb
rpm_sourcerpm: gensoft-amap-2.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-amap-2.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  AMAP is a novel algorithm for producing multiple sequence alignments.  It utilizes posterior decoding, and a novel sequence-annealing alignment, instead of the traditional progressive alignment method.

description:
  AMAP is a novel algorithm for producing multiple sequence alignments.  It utilizes posterior decoding, and a novel sequence-annealing alignment, instead of the traditional progressive alignment method.


pkgId: 029558c8853c21155751bd47eb5fa39e6cdf7967201cd67cfa656ca775802265
name: gensoft-amrfinder-3.10.24
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e2feef5abd35
rpm_sourcerpm: gensoft-amrfinder-3.10.24-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-amrfinder-3.10.24-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  This software and the accompanying database are designed to find acquired antimicrobial resistance genes and some point mutations in protein or assembled nucleotide sequences. We have also added plus stress, head, and biocide resistance as well as some virulence factors and E. coli antigens.

description:
  This software and the accompanying database are designed to find acquired antimicrobial resistance genes and some point mutations in protein or assembled nucleotide sequences. We have also added plus stress, head, and biocide resistance as well as some virulence factors and E. coli antigens.


pkgId: ce99c31b5991b11cf2c942effd906af1556eda740918c05890e7232223159b28
name: gensoft-anaquin-3.17.7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f3fdcec36519
rpm_sourcerpm: gensoft-anaquin-3.17.7-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-anaquin-3.17.7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Anaquin is a command-line software toollkit used to analyse sequins. Anaquin includes tools to partition sequin-derived reads from a library (split), calibrate sequin alignment coverage t (calibrate), calculate diagnostic statistics and generate reports (germline and somatic).

description:
  Anaquin is a command-line software toollkit used to analyse sequins. Anaquin includes tools to partition sequin-derived reads from a library (split), calibrate sequin alignment coverage t (calibrate), calculate diagnostic statistics and generate reports (germline and somatic).


pkgId: d358c03c031546a042d75f65b5356f1b272c31dddff31b2553f6ac516a5250df
name: gensoft-ant-1.10.7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-ant-1.10.7-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ant-1.10.7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a Java based build tool. In theory it is kind of like make without makes wrinkles and with the full portability of pure java code.

description:
  a Java based build tool. In theory it is kind of like make without makes wrinkles and with the full portability of pure java code.


pkgId: e669c729d23a4c19b857ea3705ce9c742c0b278fe2b395f9d657d9f0f513d1ef
name: gensoft-anvio-7
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-anvio-7-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-anvio-7-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Anvio is an open-source, community-driven analysis and visualization platform for microbial omics. It brings together many aspects of todays cutting-edge strategies including genomics, metagenomics, metatranscriptomics, pangenomics, metapangenomics, phylogenomics, and microbial population genetics in an integrated and easy-to-use fashion through extensive interactive visualization capabilities.

description:
  Anvio is an open-source, community-driven analysis and visualization platform for microbial omics. It brings together many aspects of todays cutting-edge strategies including genomics, metagenomics, metatranscriptomics, pangenomics, metapangenomics, phylogenomics, and microbial population genetics in an integrated and easy-to-use fashion through extensive interactive visualization capabilities.


pkgId: 3b83ade4e73729c37f6d3b69a0879d0e2e3226d5a485021b9dbd7688f4daccab
name: gensoft-aocc-compiler-3.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 89639c8e8666
rpm_sourcerpm: gensoft-aocc-compiler-3.0.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-aocc-compiler-3.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a high performance, production quality code generation tool. The AOCC environment provides various options to the developers while building and optimizing C, C++ and Fortran applications targeting 32-bit and 64-bit Linux platforms.

description:
  a high performance, production quality code generation tool. The AOCC environment provides various options to the developers while building and optimizing C, C++ and Fortran applications targeting 32-bit and 64-bit Linux platforms.


pkgId: 2697b1c0a0173348669089cf5c8dad51c58ff0d228123edb6d5aa7edef8f0f1e
name: gensoft-aom-3.12.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-aom-3.12.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-aom-3.12.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an open-source video codec library that serves as the reference implementation of the AV1 video compression format

description:
  an open-source video codec library that serves as the reference implementation of the AV1 video compression format


pkgId: ec10f371c0c51ee87ae79948fab2db9daf60a5cf1599679586439921effad8b2
name: gensoft-architeuthis-0.4.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build2
rpm_sourcerpm: gensoft-architeuthis-0.4.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-architeuthis-0.4.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a fast standalone command to supplement the Kraken suite of software tools such like Kraken2, KrakenUniq, and Bracken.

description:
  a fast standalone command to supplement the Kraken suite of software tools such like Kraken2, KrakenUniq, and Bracken.


pkgId: 38eb98ee6074114e3b0f91cfcd11183fae188d60636ff26cfece14335191f88d
name: gensoft-ariba-2.14.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 32f28869a4a6
rpm_sourcerpm: gensoft-ariba-2.14.6-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-ariba-2.14.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool that identifies antibiotic resistance genes by running local assemblies. It can also be used for MLST calling.

description:
  a tool that identifies antibiotic resistance genes by running local assemblies. It can also be used for MLST calling.


pkgId: 85a4803a4af234e178565d4af074599211571f3028b7b32d99addeed9e74a602
name: gensoft-armadillo-10.8.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e53c75715342
rpm_sourcerpm: gensoft-armadillo-10.8.2-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-armadillo-10.8.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

description:
  Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.


pkgId: 280045d4ac1da5c5b5f1e92f9d41573d6da237e79ce8d69c2b6f5389d56e271c
name: gensoft-arpack-ng-3.7.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a725ddfc7876
rpm_sourcerpm: gensoft-arpack-ng-3.7.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-arpack-ng-3.7.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.

description:
  ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.


pkgId: 5ffc5db6739a9c50e90ee63817a0b00e8730302d79b677fe2c0e5943043b253a
name: gensoft-artemis-15.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a01e799509de
rpm_sourcerpm: gensoft-artemis-15.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-artemis-15.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

description:
  A genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation


pkgId: 695a4e19d16930a4e5b9258aebd8d999659cf555bc0df7ddff7d2508edcc2b82
name: gensoft-asciidoc-8.6.9
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-asciidoc-8.6.9-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-asciidoc-8.6.9-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

description:
  AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.


pkgId: d4876a199dca6dd5ca66c380dd9157ab4a60fa38366c2f69c349da1b13205e35
name: gensoft-at-spi2-atk-2.38.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e5fca6179243
rpm_sourcerpm: gensoft-at-spi2-atk-2.38.0-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-at-spi2-atk-2.38.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Accessibility Toolkit provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

description:
  Accessibility Toolkit provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.


pkgId: 420d715efb42366d8f638ed52ca58d626d37c78b4304eeb697b937adcdb7bea6
name: gensoft-atac-seq-pipeline-2.1.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e336bad3cf1b
rpm_sourcerpm: gensoft-atac-seq-pipeline-2.1.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-atac-seq-pipeline-2.1.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ENCODE ATAC-seq pipeline designed for automated end-to-end quality control and processing of ATAC-seq and DNase-seq data.

description:
  ENCODE ATAC-seq pipeline designed for automated end-to-end quality control and processing of ATAC-seq and DNase-seq data.


pkgId: c423c65cdac88528da9a5ac4cf1c590bb6e8e01f753c2e45f1586530c532d77c
name: gensoft-autoconf-2.69
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 65351eeb5547
rpm_sourcerpm: gensoft-autoconf-2.69-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-autoconf-2.69-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages.

description:
  Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages.


pkgId: 79618560640547249e7f70389cec0880c4835798a60b9c552ef76ba572c9a461
name: gensoft-automake-1.16
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-automake-1.16-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-automake-1.16-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Automake is a tool for automatically generating Makefile.in files compliant with the GNU Coding Standards. Automake requires the use of Autoconf

description:
  Automake is a tool for automatically generating Makefile.in files compliant with the GNU Coding Standards. Automake requires the use of Autoconf


pkgId: 0814b6c8846e8a30b80079f6ab28e5bef416014ec066f0559d82c2ad982e6883
name: gensoft-bacphlip-0.9.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e87bf7ecaf85
rpm_sourcerpm: gensoft-bacphlip-0.9.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-bacphlip-0.9.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  BACPHLIP - a bacteriophage lifestyle prediction tool. The BACPHLIP software is designed to test whether a given phage genome (`.fasta` formatted) is likely to be either temperate (lysogenic) or virulent (lytic).

description:
  BACPHLIP - a bacteriophage lifestyle prediction tool. The BACPHLIP software is designed to test whether a given phage genome (`.fasta` formatted) is likely to be either temperate (lysogenic) or virulent (lytic).


pkgId: 5f12440a2ae62eadbf3b25d9ebb752cc4a5543e5c6217a103f36228ac75433d6
name: gensoft-bactsnp-1.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c852286680da
rpm_sourcerpm: gensoft-bactsnp-1.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-bactsnp-1.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  BactSNP is a tool to identify SNPs among bacterial isolates. BactSNP can detect SNPs and create a simple TSV file with SNP information as well as an alignment FASTA file containing reconstructed pseudo-genomes of the target isolates in a one-step process.

description:
  BactSNP is a tool to identify SNPs among bacterial isolates. BactSNP can detect SNPs and create a simple TSV file with SNP information as well as an alignment FASTA file containing reconstructed pseudo-genomes of the target isolates in a one-step process.


pkgId: 7be5e80c307a4ebe2f0a8a26d58d27f89c8c13daaa81d31755a325cb21cad16c
name: gensoft-bakta-1.11.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-bakta-1.11.4-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-bakta-1.11.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich and sORF-including annotations in machine-readable JSON & bioinformatics standard file formats for automatic downstream analysis.

description:
  a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich and sORF-including annotations in machine-readable JSON & bioinformatics standard file formats for automatic downstream analysis.


pkgId: 5f937e7ce55e7d3cea7404e0c79bf706fc2111332283e2100744511a32af2d37
name: gensoft-barrnap-0.9
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-barrnap-0.9-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-barrnap-0.9-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).

description:
  Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).


pkgId: 93d1449781ce2f593fe6cbf9b5d5478bfc058a431897ec31a3b297b16f3e611b
name: gensoft-baypass-2.41
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-baypass-2.41-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-baypass-2.41-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a population genomics software which is primarily designed to identify genetic markers subjected to selection and/or associated with population-specific covariates

description:
  a population genomics software which is primarily designed to identify genetic markers subjected to selection and/or associated with population-specific covariates


pkgId: 15dbda3dbad97ed14d41e2e18b9af9c90618af96ea420e6e6cc11b076cf31bb0
name: gensoft-bbmap-37.78
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-bbmap-37.78-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-bbmap-37.78-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A short read aligner, as well as various other bioinformatic tools. BBMap - Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. Very fast. BBNorm - Kmer-based error-correction and normalization tool. Dedupe - Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. Reformat - Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. BBDuk - Filters, trims, or masks reads with kmer matches to an artifact/contaminant file.  ... and more

description:
  A short read aligner, as well as various other bioinformatic tools. BBMap - Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. Very fast. BBNorm - Kmer-based error-correction and normalization tool. Dedupe - Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. Reformat - Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. BBDuk - Filters, trims, or masks reads with kmer matches to an artifact/contaminant file.  ... and more


pkgId: 414d8037140102109bd13092f7df2930fd1ace5e6e9a8354b16e33f25c4f314a
name: gensoft-bdei-0.13
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-bdei-0.13-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-bdei-0.13-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  fast and accurate maximum likelihood estimation of Birth-Death Exposed-Infectious (BDEI) epidemiological model parameters from phylogenetic trees.

description:
  fast and accurate maximum likelihood estimation of Birth-Death Exposed-Infectious (BDEI) epidemiological model parameters from phylogenetic trees.


pkgId: 3713fd11d0d66cd43ced01498ac379b5f821917b0a31604d6b8695b1005d6795
name: gensoft-beagle-5.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 39014f25c518
rpm_sourcerpm: gensoft-beagle-5.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-beagle-5.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a state of the art software package for analysis of large-scale genetic data sets with hundreds of thousands of markers genotyped on thousands of samples.

description:
  a state of the art software package for analysis of large-scale genetic data sets with hundreds of thousands of markers genotyped on thousands of samples.


pkgId: cedf696c87c738a4cc652d17a39bee31b35aa32a4604d8c99c33c67ee20547db
name: gensoft-beagle-lib-3.1.2
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: beagle-lib
rpm_sourcerpm: gensoft-beagle-lib-3.1.2-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-beagle-lib-3.1.2-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages.

description:
  a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages.


pkgId: 5f38374250bb230f0d7ecb213ee5e258e3535a76f5065395358962d1e38dfb2d
name: gensoft-beast-mcmc-1.10.5-23570d1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 55c39a5bf82f
rpm_sourcerpm: gensoft-beast-mcmc-1.10.5-23570d1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-beast-mcmc-1.10.5-23570d1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability.

description:
  BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability.


pkgId: c8e14917b394c513594c447466368aaa554e693a794f05a71c685d5fb0d81bb3
name: gensoft-beast-v1.10.4
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-beast-v1.10.4-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-beast-v1.10.4-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  BEAST (Bayesian evolutionary analysis sampling trees) is package for evolutionary inference from molecular sequences.

description:
  BEAST (Bayesian evolutionary analysis sampling trees) is package for evolutionary inference from molecular sequences.


pkgId: 681496c5db777827454c249d688dc91bed9a6ba9e44181f6a77a326a82de9483
name: gensoft-bedops-2.4.37
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c1e308caa9c4
rpm_sourcerpm: gensoft-bedops-2.4.37-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-bedops-2.4.37-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a suite of tools to address common questions raised in genomic studies - mostly with regard to overlap and proximity relationships between data sets

description:
  a suite of tools to address common questions raised in genomic studies - mostly with regard to overlap and proximity relationships between data sets


pkgId: 2e39d0580119afdfe41168eab12c7973ebba7b9e4db862d33f51695eccdf57e2
name: gensoft-bifrost-1.0.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-bifrost-1.0.5-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-bifrost-1.0.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

description:
  a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.


pkgId: 5574e19f8bffe9e8184c1908987aac3f0f0f4779fd47dc76c6597afc4abf70c6
name: gensoft-bioawk-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-bioawk-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-bioawk-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Bioawk is an extension to Brian Kernighan awk, adding the support of several common biological data formats, including optionally gziped BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few built-in functions and an command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk is intended to behave exactly the same as the original BWK awk.

description:
  Bioawk is an extension to Brian Kernighan awk, adding the support of several common biological data formats, including optionally gziped BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few built-in functions and an command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk is intended to behave exactly the same as the original BWK awk.


pkgId: df4531c1a64ca7b0d27707016ccfbf0d84c61ad2c05647c83a513295d2b3013c
name: gensoft-bioconvert-1.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0ce5b3a187fa
rpm_sourcerpm: gensoft-bioconvert-1.1.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-bioconvert-1.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another

description:
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another


pkgId: c9cd6c64085cc12cc03c6eecab130f13e4abb2ce55117ab1338e6016ed1b54eb
name: gensoft-biofilter-2.4.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0520d497b0cd
rpm_sourcerpm: gensoft-biofilter-2.4.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-biofilter-2.4.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software tool that provides a convenient single interface for accessing multiple publicly available human genetic data sources.

description:
  a software tool that provides a convenient single interface for accessing multiple publicly available human genetic data sources.


pkgId: e62965a46f2eec868b0d620c77f3e24cb07a8a5438d4683c05b5bf486012ce3a
name: gensoft-biom-format-2.1.10
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f450283090fa
rpm_sourcerpm: gensoft-biom-format-2.1.10-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-biom-format-2.1.10-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project

description:
  The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project


pkgId: 3c9f1a178437bdd7484fcd985b605b7c64e3137fc40049bfc966514b87e2753b
name: gensoft-bionj-NA
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 062ecf58340b
rpm_sourcerpm: gensoft-bionj-NA-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-bionj-NA-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A distance based phylogeny reconstruction algorithm, which is well suited for distances estimated from DNA or protein sequences

description:
  A distance based phylogeny reconstruction algorithm, which is well suited for distances estimated from DNA or protein sequences


pkgId: 383c04d07c1d7e6447fad148907f9262cff426d0e4197bf66adab1afc9fb03e3
name: gensoft-bismark-v0.22.3
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3463bfe24982
rpm_sourcerpm: gensoft-bismark-v0.22.3-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-bismark-v0.22.3-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step.

description:
  a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step.


pkgId: 2a90ae281a1770c1131045cd18883606c27bbb17e66e14a0ff55fa7d4d861983
name: gensoft-blasr_libcpp-5.3.4
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 1223871128c0
rpm_sourcerpm: gensoft-blasr_libcpp-5.3.4-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-blasr_libcpp-5.3.4-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment

description:
  Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment


pkgId: 0a4eea15a87501b999a9466f569ee39c8ee13665464c448f61cd27414564e8a0
name: gensoft-blast+-2.10.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rebuild
rpm_sourcerpm: gensoft-blast+-2.10.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-blast+-2.10.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. The BLAST+ applications have a number of performance and feature improvements over the legacy BLAST applications

description:
  BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. The BLAST+ applications have a number of performance and feature improvements over the legacy BLAST applications


pkgId: 2ad118f7f2ff2d63933381b10141574cc59933775dfdb971d55803bc79e33da2
name: gensoft-blast2seqids-1.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a7eef391765b
rpm_sourcerpm: gensoft-blast2seqids-1.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-blast2seqids-1.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Parse a blast2 report ( text format -m 0 ) and return a list of hits identifier in usa format. Beware the output of blast can change according of options used to index your databanks (formatdb).

description:
  Parse a blast2 report ( text format -m 0 ) and return a list of hits identifier in usa format. Beware the output of blast can change according of options used to index your databanks (formatdb).


pkgId: 2f42e3f3b1a82c15a82b391df01b79b39481741b12447d519eeee44e4e0e54b9
name: gensoft-bpplib-2.2.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-bpplib-2.2.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-bpplib-2.2.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. libraries provided are bpp-core, bpp-seq, bpp-phyl

description:
  Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. libraries provided are bpp-core, bpp-seq, bpp-phyl


pkgId: b9d8e36eebcfd1b91935f7de6ae9255115859c637795957c0fe600806c5e3f69
name: gensoft-bppsuite-2.2.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-bppsuite-2.2.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-bppsuite-2.2.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  tolls for Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs.

description:
  tolls for Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs.


pkgId: 9c60f2c53a061609eb091a22ee11a53cc36205330df2a6cfe0f48f79266045d3
name: gensoft-breakdancer-1.4.5
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-breakdancer-1.4.5-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-breakdancer-1.4.5-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  genome-wide detection of structural variants from next generation paired-end sequencing reads. BreakDancerMax predicts five types of structural variants insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation.

description:
  genome-wide detection of structural variants from next generation paired-end sequencing reads. BreakDancerMax predicts five types of structural variants insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation.


pkgId: 23991e3b9df08c8af019d3a1d88cf8e5c0c2f903bb6f1dd15feab687aef8ee2a
name: gensoft-breseq-0.35.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-breseq-0.35.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-breseq-0.35.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for microbial sized genomes

description:
  a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for microbial sized genomes


pkgId: d6ad3769b84a839bf4ca987cbbfda2154efd0b28c6a517ec93311c7869c59877
name: gensoft-bsoft-2.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3fb78ce13bf3
rpm_sourcerpm: gensoft-bsoft-2.1.0-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-bsoft-2.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a collection of programs and a platform for development of software for image and molecular processing in structural biology.

description:
  a collection of programs and a platform for development of software for image and molecular processing in structural biology.


pkgId: 8a137ea40e3fed2e5dc21b9256c99f620f9f706714869678585a45c26085aa0c
name: gensoft-busco-3.0.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 62b2608b7b16
rpm_sourcerpm: gensoft-busco-3.0.2-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-busco-3.0.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs.

description:
  Provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs.


pkgId: 56160e272d72a3ba81b165d7cbe11329c252ba06e271ad5a18ac459905d25268
name: gensoft-bustools-0.40.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3913ed70b714
rpm_sourcerpm: gensoft-bustools-0.40.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-bustools-0.40.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  bustools is a program for manipulating BUS files for single cell RNA-Seq datasets. It can be used to error correct barcodes, collapse UMIs, produce gene count or transcript compatbility count matrices, and is useful for many other tasks

description:
  bustools is a program for manipulating BUS files for single cell RNA-Seq datasets. It can be used to error correct barcodes, collapse UMIs, produce gene count or transcript compatbility count matrices, and is useful for many other tasks


pkgId: ca57860c9e0e90edcb9e46e2593be782442d85f5b6cc104359348ea4142c6d5e
name: gensoft-c-blosc-1.17.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-c-blosc-1.17.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-c-blosc-1.17.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Blosc is a high performance compressor optimized for binary data. It has been designed to transmit data to the processor cache faster than the traditional, non-compressed, direct memory fetch approach via a memcpy() OS call.

description:
  Blosc is a high performance compressor optimized for binary data. It has been designed to transmit data to the processor cache faster than the traditional, non-compressed, direct memory fetch approach via a memcpy() OS call.


pkgId: a32fb4850d28b9899b688ab8ba6628c4f614ecd1873ed1c9f9fcaf2d26c0e36e
name: gensoft-caller-2.4
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-caller-2.4-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-caller-2.4-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  maps introgressed segments in the human genome i.e. classifies each given region to either human or archaic ancestry states using conditional random fields (CRF).

description:
  maps introgressed segments in the human genome i.e. classifies each given region to either human or archaic ancestry states using conditional random fields (CRF).


pkgId: a891717ad27be01b3487ce081e02623f87d11c3b8549cd4a1575c4ffbdc57ec0
name: gensoft-canu-1.9
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: mykrobe
rpm_sourcerpm: gensoft-canu-1.9-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-canu-1.9-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

description:
  Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).


pkgId: d8c89dac1dd653b67b5090ce19dcf6ccc2e614c2da505454de4411925bf6bcd6
name: gensoft-casper-0.8.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-casper-0.8.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-casper-0.8.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads

description:
  CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads


pkgId: 6f375b8d5786d7cbb7b2f3637c5c663e48536656cadf90fdc2a84dec5365fb0a
name: gensoft-cayman-0.10.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build2
rpm_sourcerpm: gensoft-cayman-0.10.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-cayman-0.10.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Cayman (Carbohydrate active enzymes profiling of metagenomes) is a command-line profiling tool for profiling CAZyme abundances in metagenomic datasets

description:
  Cayman (Carbohydrate active enzymes profiling of metagenomes) is a command-line profiling tool for profiling CAZyme abundances in metagenomic datasets


pkgId: 61b9bea873e807355afb78e357602d5c58550b43bdb1c32e5bd1cba3aa007052
name: gensoft-cellpose-3.0.10
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-cellpose-3.0.10-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-cellpose-3.0.10-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A generalist algorithm for cell and nucleus segmentation that can be optimized for your own data and perform image restoration

description:
  A generalist algorithm for cell and nucleus segmentation that can be optimized for your own data and perform image restoration


pkgId: 69559ca03b5b98486ff4aa0332ae4d8d1f9b9b0876a05db7765e225ac3bf6883
name: gensoft-cellranger-10.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker2
rpm_sourcerpm: gensoft-cellranger-10.0.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-cellranger-10.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis.

description:
  Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis.


pkgId: 60791db5e7e1d5b556870238cab0dcbbd1319f5f24ff3fdb982cf89ae3e88572
name: gensoft-centrifuge-1.0.4-beta
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-centrifuge-1.0.4-beta-4.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-centrifuge-1.0.4-beta-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a novel microbial classification engine that enables rapid, accurate and sensitive labeling of reads and quantification of species on desktop computers.

description:
  a novel microbial classification engine that enables rapid, accurate and sensitive labeling of reads and quantification of species on desktop computers.


pkgId: ad92eb000fbdcd35ba77fc980b9db23bdf4829433f796361bfef837f8876980a
name: gensoft-chewBBACA-2.5.5
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-chewBBACA-2.5.5-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-chewBBACA-2.5.5-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio

description:
  chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio


pkgId: 95c2ba544d1c0c7fb000f25051d00299483c4525fefa562aabc8ae0c118fe2fe
name: gensoft-chopper-0.12.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-chopper-0.12.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-chopper-0.12.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Rust implementation of NanoFilt+NanoLyse, both originally written in Python. This tool, intended for long read sequencing such as PacBio or ONT, filters and trims a fastq file.

description:
  Rust implementation of NanoFilt+NanoLyse, both originally written in Python. This tool, intended for long read sequencing such as PacBio or ONT, filters and trims a fastq file.


pkgId: 393a256ce71b785a60ed573d3f859e4a91931d869d43acab6662a2083317a18a
name: gensoft-chromocombine-0.0.4
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 68cbc78a3855
rpm_sourcerpm: gensoft-chromocombine-0.0.4-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-chromocombine-0.0.4-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ChromoCombine is a tool to help manage the large number of files generated when running ChromoPainter in parallel on a large number of separate compute nodes.

description:
  ChromoCombine is a tool to help manage the large number of files generated when running ChromoPainter in parallel on a large number of separate compute nodes.


pkgId: ca802f7ab2af512d2fa86e69e5c462bf26419370277c814f8f6a3fb91fdd6a86
name: gensoft-chromopainter-0.0.4
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c94626628352
rpm_sourcerpm: gensoft-chromopainter-0.0.4-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-chromopainter-0.0.4-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool for finding haplotypes in sequence data.  Each individual is painted as a combination of all other sequences.

description:
  a tool for finding haplotypes in sequence data.  Each individual is painted as a combination of all other sequences.


pkgId: 3e6422a4f90400d9ea2ca99bf8c7fab8655d686f73cb8c73097285ac23bb24e9
name: gensoft-cistem-1.0.0-beta
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 6cefb4d4a189
rpm_sourcerpm: gensoft-cistem-1.0.0-beta-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-cistem-1.0.0-beta-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them

description:
  user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them


pkgId: 4fa5135330dbec73544d229eca6feaae86f07d946f710b824bca9731858f594e
name: gensoft-cln-1.3.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-cln-1.3.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-cln-1.3.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CLN (Class Library for Numbers) is a library for efficient computations with all kinds of numbers in arbitrary precision

description:
  CLN (Class Library for Numbers) is a library for efficient computations with all kinds of numbers in arbitrary precision


pkgId: 398b09c146efa1d7b69e34cc076d5c6523449cb7d3ef7065a727744434b6529f
name: gensoft-cluster-buster-2010-02-19
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 47d71da6b1ee
rpm_sourcerpm: gensoft-cluster-buster-2010-02-19-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-cluster-buster-2010-02-19-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Cluster-Buster is a program for finding interesting functional regions, such as transcriptional enhancers, in DNA sequences. Its main premise is that the functional region contains multiple smaller elements, e.g.  protein-binding sites, which thus occur in a cluster in the DNA sequence.  The user needs to specify a list of motifs short sequence patterns. the program will then look for dense clusters of these motifs in the sequence.

description:
  Cluster-Buster is a program for finding interesting functional regions, such as transcriptional enhancers, in DNA sequences. Its main premise is that the functional region contains multiple smaller elements, e.g.  protein-binding sites, which thus occur in a cluster in the DNA sequence.  The user needs to specify a list of motifs short sequence patterns. the program will then look for dense clusters of these motifs in the sequence.


pkgId: 8145c6ad35ac3605f16600b589d32100c27a28f56389ed79f83f870ecf065332
name: gensoft-consel-0.20
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-consel-0.20-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-consel-0.20-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection

description:
  Calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection


pkgId: cdf181f7a8de7486bbd80ce313fb01090df3c0d87d1366c0ba17dcff12c07798
name: gensoft-consensus-2004-04-14
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c02bce16b121
rpm_sourcerpm: gensoft-consensus-2004-04-14-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-consensus-2004-04-14-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Programs are a collection of programs for determining and analyzing DNA and protein patterns describing functional elements

description:
  Programs are a collection of programs for determining and analyzing DNA and protein patterns describing functional elements


pkgId: 8d0b04efe58141e82a595b70e924484be2321a34bed6ad371c803b04fab89890
name: gensoft-contig-extender-0.0.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f339d5960c0b
rpm_sourcerpm: gensoft-contig-extender-0.0.1-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-contig-extender-0.0.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy that explores multiple extending paths to achieve longer and highly accurate contigs. ContigExtender is effective for extending contigs significantly in in silico synthesized and real metagenomics datasets.

description:
  extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy that explores multiple extending paths to achieve longer and highly accurate contigs. ContigExtender is effective for extending contigs significantly in in silico synthesized and real metagenomics datasets.


pkgId: 5ea02af0f574c6015977153c6df9cb64b80202e360a660e7fc5998cfd39a9f71
name: gensoft-contig_info-v2.01
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0c73ebaee347
rpm_sourcerpm: gensoft-contig_info-v2.01-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-contig_info-v2.01-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  estimating several standard descriptive statistics from FASTA-formatted contig files inferred by de novo genome assembly methods

description:
  estimating several standard descriptive statistics from FASTA-formatted contig files inferred by de novo genome assembly methods


pkgId: 64f2ae0cb07fe30a083f170f5f9c2d183f1fb0b2ddfc5e28aa0b0183fcbc74d2
name: gensoft-cooler-0.9.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dram
rpm_sourcerpm: gensoft-cooler-0.9.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-cooler-0.9.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Cooler is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices.

description:
  Cooler is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices.


pkgId: 03df9acbffd89271890bbf3f27282549829d82e2711b356f2aa84eab81a539e1
name: gensoft-coral-1.4.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d6c23b05467b
rpm_sourcerpm: gensoft-coral-1.4.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-coral-1.4.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Coral is a program to correct sequencing errors in short-read high-throughput data, such as those generated by Illumina Genome Analyzer and Roche 454 Genome Sequencer.

description:
  Coral is a program to correct sequencing errors in short-read high-throughput data, such as those generated by Illumina Genome Analyzer and Roche 454 Genome Sequencer.


pkgId: c34ebcf87f602ea757d285831a561c4936b5ac33cff39e5d328f499245f38fc1
name: gensoft-crass-1.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 66f416089986
rpm_sourcerpm: gensoft-crass-1.0.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-crass-1.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Crass (The CRISPR Assembler) is a program that searches through raw metagenomic reads for Clustered Regularly Interspersed Short Palindromic Repeats

description:
  Crass (The CRISPR Assembler) is a program that searches through raw metagenomic reads for Clustered Regularly Interspersed Short Palindromic Repeats


pkgId: 7faa48b6d122319a2926007b298d36218a30bd4f70ac4e29305c033f0888dce6
name: gensoft-crop-v1.33
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7b56f475e1a3
rpm_sourcerpm: gensoft-crop-v1.33-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-crop-v1.33-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  clustering tool designed mainly for Metagenomics studies, which clusters 16S rRNA sequences into Operational Taxonomic Units

description:
  clustering tool designed mainly for Metagenomics studies, which clusters 16S rRNA sequences into Operational Taxonomic Units


pkgId: 6b35dfe6bea26e9f96e5066e1c07c5e94f9d8b0957f21df89984c8946ac971b4
name: gensoft-cryoCARE-0.3.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-cryoCARE-0.3.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-cryoCARE-0.3.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a memory efficient implementation of Content-Aware Image Restoration for Cryo-Transmission Electron Microscopy Data (cryoCARE)

description:
  a memory efficient implementation of Content-Aware Image Restoration for Cryo-Transmission Electron Microscopy Data (cryoCARE)


pkgId: 1ebb7a49c68a8797e41e6906190e8e11a799b30db65ebfd8e62fbd58f87470dc
name: gensoft-cryoSPARC-4.0.3
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e336bad3cf1b
rpm_sourcerpm: gensoft-cryoSPARC-4.0.3-4.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-cryoSPARC-4.0.3-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines.

description:
  CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines.


pkgId: 9df6b0c9dc06c1a69bfb9efb366251ce01211cb094aec8ac711ff79bf587758f
name: gensoft-csa-0.1.12
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 62b2608b7b16
rpm_sourcerpm: gensoft-csa-0.1.12-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-csa-0.1.12-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Connection-Set Algebra. The CSA library provides elementary connection-sets and operators for combining them. It also provides an iteration interface to such connection-sets enabling efficient iteration over existing connections with a small memory footprint also for very large networks. The CSA can be used as a component of neuronal network simulators or other tools.

description:
  Connection-Set Algebra. The CSA library provides elementary connection-sets and operators for combining them. It also provides an iteration interface to such connection-sets enabling efficient iteration over existing connections with a small memory footprint also for very large networks. The CSA can be used as a component of neuronal network simulators or other tools.


pkgId: bf5d8bccd00a58efd34741ddaebf39bb61cae362c883607f9f3927ed4eaa61f3
name: gensoft-cufflinks-2.2.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 099b77605205
rpm_sourcerpm: gensoft-cufflinks-2.2.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-cufflinks-2.2.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples

description:
  Assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples


pkgId: 26c91232385bcf605f327a0299499d8281008a2c67be5397d0b32f274cf5fd69
name: gensoft-cups-2.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-cups-2.3.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-cups-2.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  CUPS is the standards-based, open source printing system developed by Apple Inc. for macOS and other UNIX-like operating systems. CUPS uses the Internet Printing Protocol (IPP) to support printing to local and network printers.

description:
  CUPS is the standards-based, open source printing system developed by Apple Inc. for macOS and other UNIX-like operating systems. CUPS uses the Internet Printing Protocol (IPP) to support printing to local and network printers.


pkgId: 563f447645fe0e5b89da5eba8deac113c0530ab172a8fdf571e03990ed47820b
name: gensoft-curl-7.68.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-curl-7.68.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-curl-7.68.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  curl is an open source command line tool and library for transferring data with URL syntax, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMB, SMTP, SMTPS, Telnet and TFTPA Massively Spiffy Yet Delicately Unobtrusive Compression Library.

description:
  curl is an open source command line tool and library for transferring data with URL syntax, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMB, SMTP, SMTPS, Telnet and TFTPA Massively Spiffy Yet Delicately Unobtrusive Compression Library.


pkgId: 39b4d9bd9eca71c8de80eaa2e25fbf4748f473d1343d5d370f880856e697448e
name: gensoft-cuttlefish-2.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c893fc4c2654
rpm_sourcerpm: gensoft-cuttlefish-2.0.0-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-cuttlefish-2.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a fast, parallel, and very lightweight memory tool to construct the compacted de Bruijn graph from sequencing reads or reference sequences.

description:
  a fast, parallel, and very lightweight memory tool to construct the compacted de Bruijn graph from sequencing reads or reference sequences.


pkgId: eeea6ed2d10819d991ba8c4d4da79de85d8acd3620f23bb196ea1da841cb39a9
name: gensoft-darshan-3.2.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d37d6d8659e6
rpm_sourcerpm: gensoft-darshan-3.2.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-darshan-3.2.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Darshan, a scalable HPC I/O characterization tool. Darshan is designed to capture an accurate picture of application I/O behavior, including properties such as patterns of access within files, with minimum overhead.

description:
  Darshan, a scalable HPC I/O characterization tool. Darshan is designed to capture an accurate picture of application I/O behavior, including properties such as patterns of access within files, with minimum overhead.


pkgId: 75fd57e63c71eaa0369c9e24246ca2a1df09737d353d64b6edc35ccb49aa26c8
name: gensoft-dash-1.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0556859fa4a8
rpm_sourcerpm: gensoft-dash-1.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-dash-1.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  DASH (DASH Associates Shared Haplotypes), that builds upon pairwise IBD shared segments to infer clusters of IBD individuals

description:
  DASH (DASH Associates Shared Haplotypes), that builds upon pairwise IBD shared segments to infer clusters of IBD individuals


pkgId: 5b8a83966593551775938a7c3b1205fab7873dc9632cb240d763394f547f14bc
name: gensoft-datamash-1.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-datamash-1.6-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-datamash-1.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GNU Datamash is a command-line program which performs basic numeric,textual and statistical operations on input textual data files.  it is designed to be portable and reliable, and aid researchers to easily automate analysis pipelines, without writing code or even short scripts

description:
  GNU Datamash is a command-line program which performs basic numeric,textual and statistical operations on input textual data files.  it is designed to be portable and reliable, and aid researchers to easily automate analysis pipelines, without writing code or even short scripts


pkgId: ed747bc94069a091aeec5bd2830314e3d01c1c96ecec7a857d8a87cb36e25b6d
name: gensoft-db-18.1.32
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-db-18.1.32-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-db-18.1.32-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Berkeley DB is a family of embedded key-value database libraries providing scalable high-performance data management services to applications. The Berkeley DB package contains programs and utilities used by many other applications for database related functions.

description:
  Berkeley DB is a family of embedded key-value database libraries providing scalable high-performance data management services to applications. The Berkeley DB package contains programs and utilities used by many other applications for database related functions.


pkgId: ae0ca39cd97a62331b7ee4ef8411bcb7203a757279d675392c2f131aaf53150e
name: gensoft-dbgwas-0.5.4
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d4f5a8b7fb18
rpm_sourcerpm: gensoft-dbgwas-0.5.4-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-dbgwas-0.5.4-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  DBGWAS is a tool for quick and efficient bacterial GWAS. It uses a compacted De Bruijn Graph (cDBG) structure to represent the variability within all bacterial genome assemblies given as input. Then cDBG nodes are tested for association with a phenotype of interest and the resulting associated nodes are then re-mapped on the cDBG. The output of DBGWAS consists of regions of the cDBG around statistically significant nodes with several informations related to the phenotypes, offering a representation helping in the interpretation. The output can be viewed with any modern web browser, and thus easily shared.

description:
  DBGWAS is a tool for quick and efficient bacterial GWAS. It uses a compacted De Bruijn Graph (cDBG) structure to represent the variability within all bacterial genome assemblies given as input. Then cDBG nodes are tested for association with a phenotype of interest and the resulting associated nodes are then re-mapped on the cDBG. The output of DBGWAS consists of regions of the cDBG around statistically significant nodes with several informations related to the phenotypes, offering a representation helping in the interpretation. The output can be viewed with any modern web browser, and thus easily shared.


pkgId: 688fabdec217af0f01ce1fe844db8b40084edf30d5f9c1b58fe36bb270d81a09
name: gensoft-dbus-1.13.12
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-dbus-1.13.12-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-dbus-1.13.12-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a single instance application or daemon, and to launch applications and daemons on demand when their services are needed.

description:
  D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a single instance application or daemon, and to launch applications and daemons on demand when their services are needed.


pkgId: f1d75698059aa805ad27a4e609cea6f653e751fd20b3114aa233e7cfdd537625
name: gensoft-deeplocpro-1.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-deeplocpro-1.0.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-deeplocpro-1.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a multiclass subcellular localization prediction tool for prokaryotic proteins, trained on experimentally verified data curated from Uniprot and PSORTdb.

description:
  a multiclass subcellular localization prediction tool for prokaryotic proteins, trained on experimentally verified data curated from Uniprot and PSORTdb.


pkgId: 9fac6ac3081bd8521e8b77a608ecaaa4a9fa75784f430adcb0cc5d9a40853cfe
name: gensoft-deepvariant-1.1.0
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-deepvariant-1.1.0-4.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-deepvariant-1.1.0-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classifies each tensor using a convolutional neural network, and finally reports the results in a standard VCF or gVCF file.

description:
  a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classifies each tensor using a convolutional neural network, and finally reports the results in a standard VCF or gVCF file.


pkgId: 393ffaf637782dc3b873a3376d79dfad82057815f73db483552d85f89bb5d1bc
name: gensoft-delly-0.8.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d3fb5da00697
rpm_sourcerpm: gensoft-delly-0.8.2-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-delly-0.8.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an integrated structural variant prediction method that can detect deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data.

description:
  an integrated structural variant prediction method that can detect deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data.


pkgId: c15c6305eb074e0eef0fc65a20b8dc5ab7e53d7bd29e8a64a00674c471648d65
name: gensoft-demuxlet-0.1.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 61cba251e5d6
rpm_sourcerpm: gensoft-demuxlet-0.1.0-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-demuxlet-0.1.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software tool to deconvolute sample identity and identify multiplets when multiple samples are pooled by barcoded single cell sequencing.

description:
  a software tool to deconvolute sample identity and identify multiplets when multiple samples are pooled by barcoded single cell sequencing.


pkgId: ebde7d55a37d58f7f301ead9ed9691a1d529d0041a7cd53b42f9a8bedfb319e9
name: gensoft-dfast_core-1.3.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-dfast_core-1.3.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-dfast_core-1.3.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  flexible and customizable pipeline for prokaryotic genome annotation as well as data submission to the INSDC.

description:
  flexible and customizable pipeline for prokaryotic genome annotation as well as data submission to the INSDC.


pkgId: e361773f86fcd2c172e43fc29e7ba47cd5c24d96a2f12e103bf763e0d34d8f4f
name: gensoft-diamond-0.8.22
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-diamond-0.8.22-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-diamond-0.8.22-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000.

description:
  DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000.


pkgId: c189c908dcd5cd6dc5ba7079942e2c04f86071b0ba37b6f1dd6cc15273e57a39
name: gensoft-diffreps-1.55.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3463bfe24982
rpm_sourcerpm: gensoft-diffreps-1.55.6-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-diffreps-1.55.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Differential analysis for ChIP-seq with biological replicates. This software is developed to find different peaks in ChIP-seq. It scans the whole genome using a sliding window, performing millions of statistical tests and report the significant hits. It takes into account the biological variations within a group of samples and uses that information to enhance the statistical power. Considering biological variation is of high importance, especiallly for in vivo brain tissues

description:
  Differential analysis for ChIP-seq with biological replicates. This software is developed to find different peaks in ChIP-seq. It scans the whole genome using a sliding window, performing millions of statistical tests and report the significant hits. It takes into account the biological variations within a group of samples and uses that information to enhance the statistical power. Considering biological variation is of high importance, especiallly for in vivo brain tissues


pkgId: 21b98614b4d11137cfbe0e47fc280da1d85b4312bd273368099fe8c3cf26fae3
name: gensoft-dlib-19.19
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-dlib-19.19-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-dlib-19.19-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Dlib is a general purpose cross-platform open source software library written in the C++ programming language.

description:
  Dlib is a general purpose cross-platform open source software library written in the C++ programming language.


pkgId: 66f37938c7483ef41789d1aa4953513e80790ae11c352532fffcbfeaf348ac8f
name: gensoft-dmtcp-2.6.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-dmtcp-2.6.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-dmtcp-2.6.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  DMTCP is a tool to transparently checkpoint the state of multiple simultaneous applications, including multi-threaded and distributed applications. It operates directly on the user binary executable, without any Linux kernel modules or other kernel modifications.

description:
  DMTCP is a tool to transparently checkpoint the state of multiple simultaneous applications, including multi-threaded and distributed applications. It operates directly on the user binary executable, without any Linux kernel modules or other kernel modifications.


pkgId: b41f57c3fca820d001ee2834786c433789262bb9e792fbf02864c35a0b0971a3
name: gensoft-doxygen-1.8.17
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-doxygen-1.8.17-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-doxygen-1.8.17-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Doxygen is the de facto standard tool for generating documentation from annotated C++ sources, but it also supports other popular programming languages such as C, Objective-C, C\#, PHP, Java, Python, IDL (Corba, Microsoft, and UNO/OpenOffice flavors), Fortran, VHDL, Tcl, and to some extent D.

description:
  Doxygen is the de facto standard tool for generating documentation from annotated C++ sources, but it also supports other popular programming languages such as C, Objective-C, C\#, PHP, Java, Python, IDL (Corba, Microsoft, and UNO/OpenOffice flavors), Fortran, VHDL, Tcl, and to some extent D.


pkgId: aae277668c3dab65ae92e918454929fd9b2b473e583e930d63ebf9138baba187
name: gensoft-drep-3.2.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b17424946004
rpm_sourcerpm: gensoft-drep-3.2.2-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-drep-3.2.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  program for rapidly comparing large numbers of genomes. dRep can also de-replicate a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set.

description:
  program for rapidly comparing large numbers of genomes. dRep can also de-replicate a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set.


pkgId: d2bceed1104e3f347dc00bf8c0c1f17c8f014c7a63bc80075cf5f11fd43ea28f
name: gensoft-dsrc-1.02
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-dsrc-1.02-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-dsrc-1.02-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an application designed for compression of data files containing reads from DNA sequencing in FASTQ format.

description:
  an application designed for compression of data files containing reads from DNA sequencing in FASTQ format.


pkgId: 96105afc8afd6260492a08f5a08f28059e5fc34030f6a2e17b4837e161e47fe2
name: gensoft-eXpress-1.5.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8d2a898789bc
rpm_sourcerpm: gensoft-eXpress-1.5.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-eXpress-1.5.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences.

description:
  a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences.


pkgId: c02ef6125e9136f993c844193de5e1c73d19fa33386508dabed2f5606e118cb6
name: gensoft-ea-utils-1.1.2-806
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: de9c41b77c58
rpm_sourcerpm: gensoft-ea-utils-1.1.2-806-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ea-utils-1.1.2-806-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Command-line tools for processing biological sequencing data. Barcode demultiplexing, adapter trimming, etc. Primarily written to support an Illumina based pipeline - but should work with any FASTQs.

description:
  Command-line tools for processing biological sequencing data. Barcode demultiplexing, adapter trimming, etc. Primarily written to support an Illumina based pipeline - but should work with any FASTQs.


pkgId: 363c29f1618b945ec651c9ed6c6eaedbe71737bed4230661788840b295d533ad
name: gensoft-ecoli_serotyping-2.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-ecoli_serotyping-2.0.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ecoli_serotyping-2.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a standalone versatile serotyping module for Escherichia coli. It supports both fasta (assembled) and fastq (raw reads) file formats. The tool provides convenient species identification coupled to quality control module giving a complete, transparent and reference laboratories suitable report on E.coli serotyping, Shiga toxin typing and pathotyping.

description:
  a standalone versatile serotyping module for Escherichia coli. It supports both fasta (assembled) and fastq (raw reads) file formats. The tool provides convenient species identification coupled to quality control module giving a complete, transparent and reference laboratories suitable report on E.coli serotyping, Shiga toxin typing and pathotyping.


pkgId: da940f1b17c113d09437d5cb02b9787c941b9fc122f18d7beccb2b93cacd5c7a
name: gensoft-edirect-18.2
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9b7d204213f2
rpm_sourcerpm: gensoft-edirect-18.2-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-edirect-18.2-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Entrez Direct (EDirect) is an advanced method for accessing the NCBI s set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.

description:
  Entrez Direct (EDirect) is an advanced method for accessing the NCBI s set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.


pkgId: 27ed0a50d5b5e6f49a368c9770b07340634417a0aa34f6859e5a277dd6916c55
name: gensoft-egglib-3.0.0b21
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-egglib-3.0.0b21-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-egglib-3.0.0b21-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  EggLib is a C++/Python library and program package for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations.

description:
  EggLib is a C++/Python library and program package for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations.


pkgId: d9fcec10c8763477029bd0a9a0b144b1e18fbf169f418cb6f82f43db76baf8df
name: gensoft-eggnog-mapper-1.0.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7b813f3d8eec
rpm_sourcerpm: gensoft-eggnog-mapper-1.0.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-eggnog-mapper-1.0.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  eggnog-mapper is a tool for fast functional annotation of novel sequences (genes or proteins) using precomputed eggNOG-based orthology assignments

description:
  eggnog-mapper is a tool for fast functional annotation of novel sequences (genes or proteins) using precomputed eggNOG-based orthology assignments


pkgId: e12c3d1302e84c337cfb2c70f06464565b64589560f7d2bfcfd84af89d1e4c9d
name: gensoft-eigen-3.3.7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 688f2a6efb80
rpm_sourcerpm: gensoft-eigen-3.3.7-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-eigen-3.3.7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a C++ template library for linear algebra matrices, vectors, numerical solvers, and related algorithms.

description:
  a C++ template library for linear algebra matrices, vectors, numerical solvers, and related algorithms.


pkgId: 134a853c4a538aae01b1d89ab2bf9c4848d10498ca8cfa747a76b62167ddb40e
name: gensoft-emmax-beta-07Mar2010
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0f9642f49d56
rpm_sourcerpm: gensoft-emmax-beta-07Mar2010-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-emmax-beta-07Mar2010-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  statistical test for large scale human or model organism association mapping accounting for the sample structure

description:
  statistical test for large scale human or model organism association mapping accounting for the sample structure


pkgId: 015065e3f02f9ff14cc50c3abecc68e5c16011e42e8da027a64fabe95f00a28e
name: gensoft-ete-3.1.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0fed920eb611
rpm_sourcerpm: gensoft-ete-3.1.2-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-ete-3.1.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A Python framework for the analysis and visualization of trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree

description:
  A Python framework for the analysis and visualization of trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree


pkgId: 3c708a0b65dd38926ee39fdee4e0e22b35a0ce927e03e0ead54d2b0ac46379a9
name: gensoft-evince-3.36.7
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-evince-3.36.7-4.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-evince-3.36.7-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Evince is a document viewer for multiple document formats. Evince is specifically designed to support the file following formats - PDF, Postscript, djvu, tiff, dvi, XPS, SyncTex support with gedit, comics books (cbr,cbz,cb7 and cbt).

description:
  Evince is a document viewer for multiple document formats. Evince is specifically designed to support the file following formats - PDF, Postscript, djvu, tiff, dvi, XPS, SyncTex support with gedit, comics books (cbr,cbz,cb7 and cbt).


pkgId: 6bfef3e17e6f070939721094270b9273530015d363dbef2c2bd4295475a059c3
name: gensoft-exonerate-2.4.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0f9642f49d56
rpm_sourcerpm: gensoft-exonerate-2.4.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-exonerate-2.4.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a generic tool for pairwise sequence comparison.  It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.

description:
  a generic tool for pairwise sequence comparison.  It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.


pkgId: 8abff3067dacfaa015e7962b519c48b9bf091800656c8e959c9533e545b81728
name: gensoft-expat-2.2.9
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f9263e56cb2f
rpm_sourcerpm: gensoft-expat-2.2.9-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-expat-2.2.9-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document

description:
  Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document


pkgId: 69b737905a4c04bff1d92871b13d5d8030f1a12a5420977c37f6a84e620a935a
name: gensoft-extract_genes_ABRIcate-2022-02-08
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b4631bde12de
rpm_sourcerpm: gensoft-extract_genes_ABRIcate-2022-02-08-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-extract_genes_ABRIcate-2022-02-08-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Small script to use ABRicate output to extract genes from genome assemblies, reverse complement if necessary, and print to a file

description:
  Small script to use ABRicate output to extract genes from genome assemblies, reverse complement if necessary, and print to a file


pkgId: 3bb08caec564b1097410c5875667f9988f78e24365771aa799dadb964503f60c
name: gensoft-extrae-3.7.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 9935eb27ddc8
rpm_sourcerpm: gensoft-extrae-3.7.1-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-extrae-3.7.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Extrae is the package devoted to generate Paraver trace-files for a post-mortem analysis. Extrae is a tool that uses different interposition mechanisms to inject probes into the target application so as to gather information regarding the application performance.

description:
  Extrae is the package devoted to generate Paraver trace-files for a post-mortem analysis. Extrae is a tool that uses different interposition mechanisms to inject probes into the target application so as to gather information regarding the application performance.


pkgId: d6df0ae9d984693598dc0f6b69d8b7429165ffae9772942f2b7ea7959f982467
name: gensoft-fastStructure-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-fastStructure-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-fastStructure-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  fastStructure is a fast algorithm for inferring population structure from large SNP genotype data. It is based on a variational Bayesian framework for posterior inference.

description:
  fastStructure is a fast algorithm for inferring population structure from large SNP genotype data. It is based on a variational Bayesian framework for posterior inference.


pkgId: d194008d2b85ddaac45da4753fc530c5ef716d16aa5717ec3509823a134e56b1
name: gensoft-fastaRename-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 4125bbdf8378
rpm_sourcerpm: gensoft-fastaRename-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-fastaRename-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  parse a file with fasta sequences replace the identifier of a fasta sequences by a short identifier and generate a file with renamed fasta sequences and a file of mapping

description:
  parse a file with fasta sequences replace the identifier of a fasta sequences by a short identifier and generate a file with renamed fasta sequences and a file of mapping


pkgId: 44089e704d93ebb6305e2218d2bcd1bd0dea32f17e8cff71dec343b4bcc1ae52
name: gensoft-fastme-2.1.6.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-fastme-2.1.6.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-fastme-2.1.6.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FastME provides distance algorithms to infer phylogenies. FastME is based on balanced minimum evolution, which is the very principle of NJ. FastME improves over NJ by performing topological moves using fast, sophisticated algorithms. The first version of FastME only included Nearest Neighbor Interchange (NNI). The new 2.0 version also includes Subtree Pruning and Regrafting (SPR), while remaining as fast as NJ and providing a number of facilities distance estimation for DNA and proteins with various models and options, bootstrapping, and parallel computations.

description:
  FastME provides distance algorithms to infer phylogenies. FastME is based on balanced minimum evolution, which is the very principle of NJ. FastME improves over NJ by performing topological moves using fast, sophisticated algorithms. The first version of FastME only included Nearest Neighbor Interchange (NNI). The new 2.0 version also includes Subtree Pruning and Regrafting (SPR), while remaining as fast as NJ and providing a number of facilities distance estimation for DNA and proteins with various models and options, bootstrapping, and parallel computations.


pkgId: 5f97e3e2905daeb51cee19c8d9e88701dcfff794ac2f131e9d1af844c4986a0f
name: gensoft-fastml-3.11
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b0a090ce747d
rpm_sourcerpm: gensoft-fastml-3.11-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-fastml-3.11-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Maximum likelihood reconstruction of ancestral amino-acid sequences.  A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites.

description:
  Maximum likelihood reconstruction of ancestral amino-acid sequences.  A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites.


pkgId: d333ef75802f3d8baeab1f6473221a9b9630ff04717809e911f61a5daf750e0c
name: gensoft-fastq-pair-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0627cd1bb90e
rpm_sourcerpm: gensoft-fastq-pair-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-fastq-pair-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Rewrite paired end fastq files to make sure that all reads have a mate and to separate out singletons.

description:
  Rewrite paired end fastq files to make sure that all reads have a mate and to separate out singletons.


pkgId: 67566f43f1bcece3c7ea442bc238ea14516e275862074ae9b1b85678c648c1f6
name: gensoft-fastq-tools-0.8
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0f9642f49d56
rpm_sourcerpm: gensoft-fastq-tools-0.8-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-fastq-tools-0.8-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  This package provides a number of small and efficient programs to perform common tasks with high throughput sequencing data in the FASTQ format. All of the programs work with typical FASTQ files as well as gzipped FASTQ files.

description:
  This package provides a number of small and efficient programs to perform common tasks with high throughput sequencing data in the FASTQ format. All of the programs work with typical FASTQ files as well as gzipped FASTQ files.


pkgId: ccd2b42b33ad438c43b65dff5b09b8f920a021f13c7a014ae87700ecb6bdc3c0
name: gensoft-fastq_screen-v0.14.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5befb01cabde
rpm_sourcerpm: gensoft-fastq_screen-v0.14.0-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-fastq_screen-v0.14.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.

description:
  FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.


pkgId: f6bfd7f44488b2f43cb5a5855f290905a2c077cff1dd6a7bb4cb5fe1a9f3c4da
name: gensoft-fastqtk-0.27
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a25bbfca222d
rpm_sourcerpm: gensoft-fastqtk-0.27-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-fastqtk-0.27-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  fastqtk is a fast and lightweight tool for interleaving/deinterleaving/counting/trimming FASTQ files

description:
  fastqtk is a fast and lightweight tool for interleaving/deinterleaving/counting/trimming FASTQ files


pkgId: 019a9ac9d87a711d1870e867e84ef925edc7ebb076cbd453ea042d571093a104
name: gensoft-finestructure-4.1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d96ac1cdd5ac
rpm_sourcerpm: gensoft-finestructure-4.1.1-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-finestructure-4.1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a fast and powerful algorithm for identifying population structure using dense sequencing data.  By using the output of ChromoPainter as a (nearly) sufficient summary statistic, it is able to perform model-based Bayesian clustering on large datasets, including full resequencing data, and can handle up to 1000s of individuals. Full assignment uncertainty is given.

description:
  a fast and powerful algorithm for identifying population structure using dense sequencing data.  By using the output of ChromoPainter as a (nearly) sufficient summary statistic, it is able to perform model-based Bayesian clustering on large datasets, including full resequencing data, and can handle up to 1000s of individuals. Full assignment uncertainty is given.


pkgId: aa5b795015f6edd352f5780543442679ea2d1bf69aab10b971075a605eba97af
name: gensoft-fivepseq-1.0b5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e2bd763424dd
rpm_sourcerpm: gensoft-fivepseq-1.0b5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-fivepseq-1.0b5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Fivepseq is a software package for analysis of 5prime endpoints distribution in RNA sequencing datasets. This is particularly useful for techniques that capture 5prime  monophosphorylated RNAs, such as 5PSeq, PARE-seq or GMUC. It may also be useful for ribosome profiling datasets and alike.

description:
  Fivepseq is a software package for analysis of 5prime endpoints distribution in RNA sequencing datasets. This is particularly useful for techniques that capture 5prime  monophosphorylated RNAs, such as 5PSeq, PARE-seq or GMUC. It may also be useful for ribosome profiling datasets and alike.


pkgId: bb0d330a88f31245ad5942d25d3f5f20b3d95f500ac985bc4b0428d1050d3b32
name: gensoft-flex-2.6.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-flex-2.6.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-flex-2.6.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  flex, the fast lexical analyzer generator, is a tool for generating scanners - programs which recognize lexical patterns in text.

description:
  flex, the fast lexical analyzer generator, is a tool for generating scanners - programs which recognize lexical patterns in text.


pkgId: c4c5aeeb9e6f0ed102b0fb453400f229bb08ceb656cd79cb229b92d104ce8fb4
name: gensoft-fltk-1.3.5
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-fltk-1.3.5-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-fltk-1.3.5-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FLTK is a cross-platform C++ GUI toolkit. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.

description:
  FLTK is a cross-platform C++ GUI toolkit. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.


pkgId: 39594b9449644e20a74fd9663a310597346c2cb9484e449ee483996ec7c9053f
name: gensoft-foldmason-3-954d202
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-foldmason-3-954d202-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-foldmason-3-954d202-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software tool for constructing accurate multiple alignments from large sets of protein structures.

description:
  a software tool for constructing accurate multiple alignments from large sets of protein structures.


pkgId: d4f9c4237c3ed4bab54d1cede8cdc0adbe9228b8b21f2f8e92bac57f67190c46
name: gensoft-fq2dna-21.06
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build-nv
rpm_sourcerpm: gensoft-fq2dna-21.06-4.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-fq2dna-21.06-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  fq2dna (FASTQ files to de novo assembly) is a command line tool written in Bash to ease the de novo assembly of archaea, bacteria or virus genomes from raw high-throughput sequencing (HTS) paired-end (PE) reads.

description:
  fq2dna (FASTQ files to de novo assembly) is a command line tool written in Bash to ease the de novo assembly of archaea, bacteria or virus genomes from raw high-throughput sequencing (HTS) paired-end (PE) reads.


pkgId: d1cf954dcc9c5698d5cee36889c5ec96b40810cc6e3cda851f36e29cd43771ac
name: gensoft-fqCleanER-21.06
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-fqCleanER-21.06-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-fqCleanER-21.06-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  fqCleanER (fastq Cleaning and Enhancing Routine) is a command line tool written in Bash to ease the different standard preprocessing steps of short high-throughput sequencing (HTS) reads.

description:
  fqCleanER (fastq Cleaning and Enhancing Routine) is a command line tool written in Bash to ease the different standard preprocessing steps of short high-throughput sequencing (HTS) reads.


pkgId: 68dc93a6e227cf4b7876d7b47522eb3598754595cd70e5e3be2433de455c868e
name: gensoft-fqgrep-0.4.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e981d1fbd2fb
rpm_sourcerpm: gensoft-fqgrep-0.4.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-fqgrep-0.4.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an approximate sequence pattern matcher for FASTQ/FASTA files. One can think of it as being a grep and agrep like tool optimized for FASTQ and FASTA files. It can work directly on both compressed and uncompressed file types.

description:
  an approximate sequence pattern matcher for FASTQ/FASTA files. One can think of it as being a grep and agrep like tool optimized for FASTQ and FASTA files. It can work directly on both compressed and uncompressed file types.


pkgId: 0d71bfa253965c4027f5e362b08ad2c28bd178ed71ea2d70ef69f96f8d194435
name: gensoft-freebayes-v1.3.10
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-freebayes-v1.3.10-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-freebayes-v1.3.10-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.

description:
  Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.


pkgId: c26801ba63d865feab1ff6690b48234b51ad1266063698a9f2f0091b3a3d6a9e
name: gensoft-freec-11.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f907b8175da1
rpm_sourcerpm: gensoft-freec-11.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-freec-11.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool for detection of copy-number changes and allelic imbalances (including LOH) using deep-sequencing data

description:
  a tool for detection of copy-number changes and allelic imbalances (including LOH) using deep-sequencing data


pkgId: 12a8c65da88d7eb9f6f4b1bd680c05f703c7602511a4bda822bf5e712e2a4fdc
name: gensoft-fsa-1.15.9
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c4d1aa11e2b5
rpm_sourcerpm: gensoft-fsa-1.15.9-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-fsa-1.15.9-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FSA is a probabilistic multiple sequence alignment algorithm which uses a distance-based approach to aligning homologous protein, RNA or DNA sequences.  Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FSA builds a multiple alignment using only pairwise estimations of homology.

description:
  FSA is a probabilistic multiple sequence alignment algorithm which uses a distance-based approach to aligning homologous protein, RNA or DNA sequences.  Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FSA builds a multiple alignment using only pairwise estimations of homology.


pkgId: 77be806f900803db57fe7d64cb643c4420ed1a8603d2d64ad58f4059f6a994a0
name: gensoft-fusioncatcher-v1.20
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c7f505b202b5
rpm_sourcerpm: gensoft-fusioncatcher-v1.20-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-fusioncatcher-v1.20-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  FusionCatcher searches for novel/known fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa/HiSeq/NextSeq/MiSeq) from diseased samples.

description:
  FusionCatcher searches for novel/known fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa/HiSeq/NextSeq/MiSeq) from diseased samples.


pkgId: 384c3ba3333f3b768326f2eaabefa761d78476731625149138a856f676a935d5
name: gensoft-gappa-0.8.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-gappa-0.8.2-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-gappa-0.8.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  gappa is a collection of commands for working with phylogenetic data. Its main focus are evolutionary placements of short environmental sequences on a reference phylogenetic tree

description:
  gappa is a collection of commands for working with phylogenetic data. Its main focus are evolutionary placements of short environmental sequences on a reference phylogenetic tree


pkgId: 2109db4d92f283edc54ee25f6389c03ddc0187c0ba2e984fa8ad61d1389ee15a
name: gensoft-gatb-core-1.4.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 4037300cddb6
rpm_sourcerpm: gensoft-gatb-core-1.4.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gatb-core-1.4.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GATB aka Genome Analysis Toolbox with de-Bruijn graph. gatb-core is a high-performance and low memory footprint C++ library for development purpose

description:
  GATB aka Genome Analysis Toolbox with de-Bruijn graph. gatb-core is a high-performance and low memory footprint C++ library for development purpose


pkgId: 574b67e4f671dc473dc30f05ecb0ae3d1846d5c50935fe25fa20fbf6febede30
name: gensoft-gawk-5.0.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-gawk-5.0.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gawk-5.0.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  gawk (GNU implementation of awk) The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code.

description:
  gawk (GNU implementation of awk) The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code.


pkgId: 3e8b0ec14c4b1ef0cce487921f8bcdd5783d808277555c89aef88cc67a536d1a
name: gensoft-gbk2ENA-1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0c73ebaee347
rpm_sourcerpm: gensoft-gbk2ENA-1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gbk2ENA-1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  gbk2ENA is a command line program that allows a standard Genbank file to be converted into an EMBL-like file suitable for submission to the European Nucleotide Archive (ENA).

description:
  gbk2ENA is a command line program that allows a standard Genbank file to be converted into an EMBL-like file suitable for submission to the European Nucleotide Archive (ENA).


pkgId: 7c17f6a1161e8efde5c04bf9202289cd4ea2403ff4e8ff94e90604c11315b6c1
name: gensoft-gbwt-1.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c893fc4c2654
rpm_sourcerpm: gensoft-gbwt-1.3.1-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-gbwt-1.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  an independent implementation of the graph extension (gPBWT) of the positional Burrows-Wheeler transform (PBWT).

description:
  an independent implementation of the graph extension (gPBWT) of the positional Burrows-Wheeler transform (PBWT).


pkgId: 4962fe9ba07c1e9e54373c54970df2362c6b55b6181edb5957270b642e87cf15
name: gensoft-gcc-10.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-gcc-10.1.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-gcc-10.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, Ada, and Go, as well as libraries for these languages (libstdc++, libgcj,...).

description:
  The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, Ada, and Go, as well as libraries for these languages (libstdc++, libgcj,...).


pkgId: 88d5ee2109c1e432bfdbd4d9b2fc8977d1e24a530bff728ede6fe02bace99988
name: gensoft-gcta-1.94.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 5befb01cabde
rpm_sourcerpm: gensoft-gcta-1.94.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-gcta-1.94.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GCTA (Genome-wide Complex Trait Analysis) is a software package, which was initially developed to estimate the proportion of phenotypic variance explained by all genome-wide SNPs for a complex trait but has been extensively extended for many other analyses of data from genome-wide association studies (GWASs).

description:
  GCTA (Genome-wide Complex Trait Analysis) is a software package, which was initially developed to estimate the proportion of phenotypic variance explained by all genome-wide SNPs for a complex trait but has been extensively extended for many other analyses of data from genome-wide association studies (GWASs).


pkgId: e9be93f46a55e2830b5ab4a5cb0c64d5be0679a26cf470e31cca547a49b785b2
name: gensoft-gdal-3.0.4
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a6119caaf269
rpm_sourcerpm: gensoft-gdal-3.0.4-4.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-gdal-3.0.4-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  is a translator library for raster and vector geospatial data formats. As a library, it presents a single raster abstract data model and single vector abstract data model to the calling application for all supported formats. It also comes with a variety of useful command line utilities for data translation and processing.

description:
  is a translator library for raster and vector geospatial data formats. As a library, it presents a single raster abstract data model and single vector abstract data model to the calling application for all supported formats. It also comes with a variety of useful command line utilities for data translation and processing.


pkgId: f7302921f5286e86815167b28197bffb0b8fc36d1f0d9fe3432ccfd5bd3d3195
name: gensoft-gdbm-1.18.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-gdbm-1.18.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gdbm-1.18.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a library of database functions that use extensible hashing and work similar to the standard UNIX dbm.

description:
  a library of database functions that use extensible hashing and work similar to the standard UNIX dbm.


pkgId: 57eb98591a07f0119f8f923ba52bf1cf38846d6c142cafdfc79585a19cf8a58f
name: gensoft-genehunter-2.1_r2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c50e1be602b5
rpm_sourcerpm: gensoft-genehunter-2.1_r2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-genehunter-2.1_r2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Multipoint analysis of pedigree data including non-parametric linkage analysis, LOD-score computation, information-content mapping, haplotype reconstruction

description:
  Multipoint analysis of pedigree data including non-parametric linkage analysis, LOD-score computation, information-content mapping, haplotype reconstruction


pkgId: 2724ba07cd9e87e3f4ceae849a9af908eb61b95ff7d9e03efa3e878da0147624
name: gensoft-geneid-v1.4.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 40ac08184743
rpm_sourcerpm: gensoft-geneid-v1.4.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-geneid-v1.4.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a program to predict genes in anonymous genomic sequences designed with a hierarchical structure. In the first step, splice sites, start and stop codons are predicted and scored along the sequence using Position Weight Arrays (PWAs). In the second step, exons are built from the sites. Exons are scored as the sum of the scores of the defining sites, plus the the log-likelihood ratio of a Markov Model for coding DNA. Finally, from the set of predicted exons, the gene structure is assembled, maximizing the sum of the scores of the assembled exons. geneid offers some type of support to integrate predictions from multiple source via external gff files and the redefinition of the general gene structure or model is also feasible. The accuracy of geneid compares favorably to that of other existing tools, but geneid is likely more efficient in terms of speed and memory usage.

description:
  a program to predict genes in anonymous genomic sequences designed with a hierarchical structure. In the first step, splice sites, start and stop codons are predicted and scored along the sequence using Position Weight Arrays (PWAs). In the second step, exons are built from the sites. Exons are scored as the sum of the scores of the defining sites, plus the the log-likelihood ratio of a Markov Model for coding DNA. Finally, from the set of predicted exons, the gene structure is assembled, maximizing the sum of the scores of the assembled exons. geneid offers some type of support to integrate predictions from multiple source via external gff files and the redefinition of the general gene structure or model is also feasible. The accuracy of geneid compares favorably to that of other existing tools, but geneid is likely more efficient in terms of speed and memory usage.


pkgId: f734b8fa1527ba890e02e2d60a0c654bcbf72e0a7056ede02be3abac91de1183
name: gensoft-genemark-es-4.69
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-genemark-es-4.69-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-genemark-es-4.69-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A family of gene prediction programs developed at Georgia Institute of Technology, Atlanta, Georgia, USA

description:
  A family of gene prediction programs developed at Georgia Institute of Technology, Atlanta, Georgia, USA


pkgId: 1f9bb5bcd1fb95591044e7db10711d3c9789a7521154397a66dd3a43670271db
name: gensoft-genomad-1.11.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: genomad
rpm_sourcerpm: gensoft-genomad-1.11.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-genomad-1.11.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a tool that identifies virus and plasmid genomes from nucleotide sequences. It provides state-of-the-art classification performance and can be used to quickly find mobile genetic elements from genomes, metagenomes, or metatranscriptomes.

description:
  a tool that identifies virus and plasmid genomes from nucleotide sequences. It provides state-of-the-art classification performance and can be used to quickly find mobile genetic elements from genomes, metagenomes, or metatranscriptomes.


pkgId: 6dc04d0e484c483b62f736774793e23dc1a09ac3bf7bba0c446d4732827d1c5d
name: gensoft-genometools-1.5.9
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-genometools-1.5.9-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-genometools-1.5.9-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named libgenometools which contains a wide variety of classes for efficient and convenient implementation of sequence and annotation processing software.

description:
  The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named libgenometools which contains a wide variety of classes for efficient and convenient implementation of sequence and annotation processing software.


pkgId: 51353b46b9995687a473a52a0aa695458e16a24ada1d6e3fb92c63bf9db7e864
name: gensoft-geos-3.13.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-geos-3.13.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-geos-3.13.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS). As such, it aims to contain the complete functionality of JTS in C++. This includes all the OpenGIS Simple Features for SQL spatial predicate functions and spatial operators, as well as specific JTS enhanced topology functions

description:
  GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS). As such, it aims to contain the complete functionality of JTS in C++. This includes all the OpenGIS Simple Features for SQL spatial predicate functions and spatial operators, as well as specific JTS enhanced topology functions


pkgId: 026a3f46a024f090ac2eedb3f719c38eba71140d5da7aebf354d347b24a7d177
name: gensoft-germline-1.5.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 740068e9a033
rpm_sourcerpm: gensoft-germline-1.5.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-germline-1.5.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GERMLINE is an algorithm for discovering long shared segments of Identity by Descent (IBD) between pairs of individuals in a large population

description:
  GERMLINE is an algorithm for discovering long shared segments of Identity by Descent (IBD) between pairs of individuals in a large population


pkgId: 0b0da974fd8bc58f4bb0791293d1ae09d6b29c4af95e06c52e688a35149d830c
name: gensoft-gfastats-1.3.7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-gfastats-1.3.7-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-gfastats-1.3.7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.

description:
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.


pkgId: 5677dc252e1e397a3f79251a8722b4a68f882ee715c91a75d617f5cc0cfcc27d
name: gensoft-gff3toembl-1.1.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3af9d7bf670d
rpm_sourcerpm: gensoft-gff3toembl-1.1.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gff3toembl-1.1.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  converts GFF3 files from the most commonly use prokaryote annotation tool Prokka into a format that is suitable for submission to EMBL.

description:
  converts GFF3 files from the most commonly use prokaryote annotation tool Prokka into a format that is suitable for submission to EMBL.


pkgId: 37a3bc179231907fa65f3d834feebd095cf65703f80c40899db313462240d25e
name: gensoft-ggcat-0.1.0
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-ggcat-0.1.0-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-ggcat-0.1.0-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GGCAT is a tool for building compacted (and optionally colored) de Bruijn graphs from raw sequencing data or for merging multiple existing cDBG in a single graph. It also supports sequence queryies to either a colored or non-colored graph (i.e. number/percentage of present kmers).

description:
  GGCAT is a tool for building compacted (and optionally colored) de Bruijn graphs from raw sequencing data or for merging multiple existing cDBG in a single graph. It also supports sequence queryies to either a colored or non-colored graph (i.e. number/percentage of present kmers).


pkgId: df4b18d6a3278613cc37daad75305843817503721ff35057d44787bb14146d65
name: gensoft-ghmm-0.9-rc3
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 15dbbb1efd01
rpm_sourcerpm: gensoft-ghmm-0.9-rc3-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-ghmm-0.9-rc3-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  General Hidden Markov Model library (GHMM) is a freely available C library implementing efficient data structures and algorithms for basic and extended HMMs with discrete and continous emissions.

description:
  General Hidden Markov Model library (GHMM) is a freely available C library implementing efficient data structures and algorithms for basic and extended HMMs with discrete and continous emissions.


pkgId: 8f81849365e54281f5fdf3ae713325e9c40c16a586c0ffc330a39a6d2cd4a545
name: gensoft-giac-1.5.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-giac-1.5.0-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-giac-1.5.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Giac is a C++ library, it is the CAS computing kernel, it may be used inside other C++ programs, and also Python, Java and Javascript programs.

description:
  Giac is a C++ library, it is the CAS computing kernel, it may be used inside other C++ programs, and also Python, Java and Javascript programs.


pkgId: 3f1890d6fa945b5d52e1d8f0ec690c0b9d7dbf2ed4ca1541acb9768d663df8cd
name: gensoft-ginac-1.7.8
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-ginac-1.7.8-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-ginac-1.7.8-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GiNaC is a C++ library designed to allow the creation of integrated systems that embed symbolic manipulations together with more established areas of computer science under one roof

description:
  GiNaC is a C++ library designed to allow the creation of integrated systems that embed symbolic manipulations together with more established areas of computer science under one roof


pkgId: 30d245220b230bcd8abef9d32e03ab4c4ce03090d2bdf59bb48352e6fe8b42ef
name: gensoft-gingr-1.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7f6795d5e6f8
rpm_sourcerpm: gensoft-gingr-1.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gingr-1.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Gingr is an interactive tool for exploring large-scale phylogenies in tandem with their corresponding multi-alignments. Gingr can display informative overviews for hundreds or thousands of genomes, while allowing researchers to move quickly to more detailed views of specific subclades and genomic regions, even down to the nucleotide level of their multi-alignments.

description:
  Gingr is an interactive tool for exploring large-scale phylogenies in tandem with their corresponding multi-alignments. Gingr can display informative overviews for hundreds or thousands of genomes, while allowing researchers to move quickly to more detailed views of specific subclades and genomic regions, even down to the nucleotide level of their multi-alignments.


pkgId: ec17817b920f3534e413e865ac0626a0b5879c0bb14a6a7b1240a99d8428dc04
name: gensoft-git-2.25.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3463bfe24982
rpm_sourcerpm: gensoft-git-2.25.0-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-git-2.25.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency

description:
  Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency


pkgId: 09e60212630c1dc5d4ca08d298060555acc30dd0e2e9c42b2aa8d46b3e5187ca
name: gensoft-glib-2.58.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-glib-2.58.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-glib-2.58.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GLib provides the core application building blocks for libraries and applications written in C. It provides the core object system used in GNOME, the main loop implementation, and a large set of utility functions for strings and common data structures.

description:
  GLib provides the core application building blocks for libraries and applications written in C. It provides the core object system used in GNOME, the main loop implementation, and a large set of utility functions for strings and common data structures.


pkgId: 21f28e5feedddf9c3859e380de60247817d9bde9d5343c836408d7597616f718
name: gensoft-glimmer-3.02
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e98e31b73042
rpm_sourcerpm: gensoft-glimmer-3.02-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-glimmer-3.02-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses.

description:
  a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses.


pkgId: 5b6b7562c1e58e128106b2acc49160217c29d84c67137447c91182dc640e23b5
name: gensoft-glimmerHMM-3.0.4
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 6ae119f795bf
rpm_sourcerpm: gensoft-glimmerHMM-3.0.4-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-glimmerHMM-3.0.4-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM). Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM.

description:
  GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM). Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM.


pkgId: dc4202efec52eeeb0f18c1984d0cc4f6833ef629aaaf22aaffd5b1a42e1f6a86
name: gensoft-glpk-4.65
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-glpk-4.65-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-glpk-4.65-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.

description:
  The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.


pkgId: 665ec445277642bd7060d81a804e64b6e2eb58c21b33a260ebbbdeb58ca2bc99
name: gensoft-gmap-2015-07-23
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-gmap-2015-07-23-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-gmap-2015-07-23-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Genomic Mapping and Alignment Program for mRNA and EST Sequences, Genomic Short-read Nucleotide Alignment Program

description:
  Genomic Mapping and Alignment Program for mRNA and EST Sequences, Genomic Short-read Nucleotide Alignment Program


pkgId: 9d235dcaf08f3aefd1b909b05a038579db53a6f879e72dde5c20355114fcc0ad
name: gensoft-gmp-6.2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-gmp-6.2.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gmp-6.2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating-point numbers.

description:
  is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating-point numbers.


pkgId: 112fe40a109ec44f52979ef2cee0b026279da4594a4b0a6ac99e3be1e5098caa
name: gensoft-gnuplot-5.2.8
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 39e2a0741e7a
rpm_sourcerpm: gensoft-gnuplot-5.2.8-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-gnuplot-5.2.8-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A scientific plotting package, features include 2D and 3D plotting, a huge number of output formats, interactive input or script-driven options

description:
  A scientific plotting package, features include 2D and 3D plotting, a huge number of output formats, interactive input or script-driven options


pkgId: bee25762fe3ead62e2f6192f60c4d1650eb400804243be2a553ec7aea1aadb61
name: gensoft-gnutls-3.6.11
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-gnutls-3.6.11-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gnutls-3.6.11-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them.

description:
  GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them.


pkgId: 4000397daa5a8a86d89588d3789960bf79461eebb9280ba4c8af4e285cfccdf8
name: gensoft-goalign-0.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-goalign-0.3.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-goalign-0.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GoAlign is a set of command line tools to manipulate phylogenetic trees. It is implemented in Go language

description:
  GoAlign is a set of command line tools to manipulate phylogenetic trees. It is implemented in Go language


pkgId: 05a58dbe25298421f7d1764058ce8018f55343b027cd34b954a209345720ca31
name: gensoft-gobject-introspection-1.66.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-gobject-introspection-1.66.1-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gobject-introspection-1.66.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GObject introspection is a middleware layer between C libraries (using GObject) and language bindings.

description:
  GObject introspection is a middleware layer between C libraries (using GObject) and language bindings.


pkgId: fc8332ef515789681797c98a646f67d62f5919506bc7fa9eca9bfd4055777adc
name: gensoft-gofasta-1.2.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-gofasta-1.2.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-gofasta-1.2.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  command-line utility developed to handle SARS-CoV-2 alignments, but should be useful more generally for handling consensus genomes of any microbial pathogen.

description:
  command-line utility developed to handle SARS-CoV-2 alignments, but should be useful more generally for handling consensus genomes of any microbial pathogen.


pkgId: f2abbe9eaf168fa082546346ec708d471029c3af926c2c321993bc16bc1bc152
name: gensoft-gotree-0.3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-gotree-0.3.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-gotree-0.3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GoTree is a set of command line tools to manipulate phylogenetic trees. It is implemented in Go language

description:
  GoTree is a set of command line tools to manipulate phylogenetic trees. It is implemented in Go language


pkgId: af0efc65b7b11798109a53d75fa8ae0fd36f9b77a59f99d1a81e05f584e90843
name: gensoft-gperf-3.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8a737a920491
rpm_sourcerpm: gensoft-gperf-3.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gperf-3.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.

description:
  GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.


pkgId: 3e94e0146f6b0ac1ec31579d4cb6cf617e3a137d2f84778f53ba00c9be1f9b04
name: gensoft-gperftools-2.7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-gperftools-2.7-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gperftools-2.7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  These tools are for use by developers so that they can create more robust applications. Especially of use to those developing multi-threaded applications in C++ with templates. Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler.

description:
  These tools are for use by developers so that they can create more robust applications. Especially of use to those developing multi-threaded applications in C++ with templates. Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler.


pkgId: fbc8849d812a6ba79bd92ee023c414b156875ed0b8d4cfb251956f9f7f6802d3
name: gensoft-graalvm-ce-java11-20.0.0
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: DRAM
rpm_sourcerpm: gensoft-graalvm-ce-java11-20.0.0-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-graalvm-ce-java11-20.0.0-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GraalVM is a universal virtual machine for running applications written in JavaScript, Python, Ruby, R, JVM-based languages like Java, Scala, Kotlin, and LLVM-based languages such as C and C++.

description:
  GraalVM is a universal virtual machine for running applications written in JavaScript, Python, Ruby, R, JVM-based languages like Java, Scala, Kotlin, and LLVM-based languages such as C and C++.


pkgId: dedb6cd1e6151ef8637cfc6272d026cb56f02e49d66d85045ee152f9696c3622
name: gensoft-graphlan-1.1.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3be433cb92a0
rpm_sourcerpm: gensoft-graphlan-1.1.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-graphlan-1.1.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. It focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.

description:
  a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. It focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.


pkgId: 81fa88a385c455389d289e91368af168e99dcc2f4a82b73130c1c8ffcb5caee5
name: gensoft-graphviz-2.42.3
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f4de654ba7cf
rpm_sourcerpm: gensoft-graphviz-2.42.3-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-graphviz-2.42.3-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks.

description:
  Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks.


pkgId: 7b3ab9d3bf96af8ec7b9607b6fd22c81e4777f4b0b65970779fe7b65da58a50b
name: gensoft-grenedalf-0.3.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-grenedalf-0.3.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-grenedalf-0.3.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

description:
  Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments


pkgId: bb6c04941c791b98710af1a7b945ef3b04bab111bd4038eaf33c849a8d4aaa12
name: gensoft-gromacs-2020
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-gromacs-2020-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-gromacs-2020-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  gromacs is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.

description:
  gromacs is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.


pkgId: b680eefcc4a572448367638d59f3b2576125f4a41e1c6d028bc4ea7e0707c749
name: gensoft-gsl-1.16
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7aa5883b5935
rpm_sourcerpm: gensoft-gsl-1.16-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gsl-1.16-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a numerical library for C and C++ programmers, that provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. There are over 1000 functions in total with an extensive test suite.

description:
  a numerical library for C and C++ programmers, that provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. There are over 1000 functions in total with an extensive test suite.


pkgId: 06cfd24472ae1aa063bb511839a9e484d31ba35105036d3adc9cbbc4f265492e
name: gensoft-gtk+-2.24.32
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-gtk+-2.24.32-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gtk+-2.24.32-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  GTK+, or the GIMP Toolkit, is a multi-platform toolkit for creating graphical user interfaces. Offering a complete set of widgets, GTK+ is suitable for projects ranging from small one-off tools to complete application suites.

description:
  GTK+, or the GIMP Toolkit, is a multi-platform toolkit for creating graphical user interfaces. Offering a complete set of widgets, GTK+ is suitable for projects ranging from small one-off tools to complete application suites.


pkgId: f5f9f0481080ab522cc6a53547d4cda92ad306568543ebf0c5a752de350faa8b
name: gensoft-gubbins-2.4.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: f15abfa4d791
rpm_sourcerpm: gensoft-gubbins-2.4.1-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-gubbins-2.4.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions.

description:
  gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions.


pkgId: 33ad3f3989cc26ee1bde0fadedfbcbdfcef8e3f5c1bd68ea9a3e804f4f81d27c
name: gensoft-gutsmash-1555cd7
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: e336bad3cf1b
rpm_sourcerpm: gensoft-gutsmash-1555cd7-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-gutsmash-1555cd7-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A new approach to functionally profile the human microbiome for specialized primary metabolic gene clusters

description:
  A new approach to functionally profile the human microbiome for specialized primary metabolic gene clusters


pkgId: 95eac501520732860fcdebae67264bb5f95976366f2d547f23c681d61c4b4ae0
name: gensoft-gzstream-1.5
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-gzstream-1.5-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-gzstream-1.5-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Gzstream is a small C++ library, basically just a wrapper, that provides the functionality of the zlib C-library in a C++ iostream.

description:
  Gzstream is a small C++ library, basically just a wrapper, that provides the functionality of the zlib C-library in a C++ iostream.


pkgId: 86085b635072f9488394c3ed7bc997b857888be9e29cda13f8ac2444e13224c3
name: gensoft-haddock3-2024.12.0b7
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-haddock3-2024.12.0b7-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-haddock3-2024.12.0b7-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  HADDOCK, standing for High Ambiguity Driven protein-protein DOCKing, is a widely used computational tool for the integrative modeling of biomolecular interactions.

description:
  HADDOCK, standing for High Ambiguity Driven protein-protein DOCKing, is a widely used computational tool for the integrative modeling of biomolecular interactions.


pkgId: 336221e5c78767b60a6c328a56cfe0b66e205f11093038267e8e17014649f1bf
name: gensoft-hal-v2.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 8d3d25229f0b
rpm_sourcerpm: gensoft-hal-v2.1-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-hal-v2.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Hierarchical Alignment (HAL) Format API (v2.1). HAL is a structure to efficiently store and index multiple genome alignments and ancestral reconstructions. HAL is a graph-based representation which provides several advantages over matrix/block-based formats such as MAF, such as improved scalability and the ability to perform queries with respect to an arbitrary reference or subtree.  This package includes the HAL API and several analysis and conversion tools

description:
  Hierarchical Alignment (HAL) Format API (v2.1). HAL is a structure to efficiently store and index multiple genome alignments and ancestral reconstructions. HAL is a graph-based representation which provides several advantages over matrix/block-based formats such as MAF, such as improved scalability and the ability to perform queries with respect to an arbitrary reference or subtree.  This package includes the HAL API and several analysis and conversion tools


pkgId: 10e8f6f1528634870191ecfb2040ca13555becdc70d4f45721eeac54d05c8d81
name: gensoft-hapbin-1.3.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 6c8ad4e8fd28
rpm_sourcerpm: gensoft-hapbin-1.3.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-hapbin-1.3.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  hapbin is a collection of tools for efficiently calculating Extended Haplotype Homozygosity (EHH), the Integrated Haplotype Score (iHS) and the Cross Population Extended Haplotype Homozogysity (XP-EHH) statistic.

description:
  hapbin is a collection of tools for efficiently calculating Extended Haplotype Homozygosity (EHH), the Integrated Haplotype Score (iHS) and the Cross Population Extended Haplotype Homozogysity (XP-EHH) statistic.


pkgId: 6a73acccfebfc301e753528a143ec0e6d7481c1c6499f1ca7be278712980f60f
name: gensoft-harvest-tools-1.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7da88420ff41
rpm_sourcerpm: gensoft-harvest-tools-1.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-harvest-tools-1.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  HarvestTools is a utility for creating and interfacing with Gingr files, which are efficient archives that the Harvest Suite uses to store reference-compressed multi-alignments, phylogenetic trees, filtered variants and annotations. Though designed for use with Parsnp and Gingr, HarvestTools can also be used for generic conversion between standard bioinformatics file formats.

description:
  HarvestTools is a utility for creating and interfacing with Gingr files, which are efficient archives that the Harvest Suite uses to store reference-compressed multi-alignments, phylogenetic trees, filtered variants and annotations. Though designed for use with Parsnp and Gingr, HarvestTools can also be used for generic conversion between standard bioinformatics file formats.


pkgId: fca0bec02b47a3a8214af257c148c8933bc0911aa52717aee33aa8117f01692a
name: gensoft-hclust2-1.0.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 99f927a60a93
rpm_sourcerpm: gensoft-hclust2-1.0.0-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-hclust2-1.0.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publication.

description:
  a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publication.


pkgId: dcbddf5d66e79c9881febf8cd6dfeac7cafeb1af9c195f42ce57a79ec7a9d574
name: gensoft-hdf5-1.10.6
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-hdf5-1.10.6-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-hdf5-1.10.6-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.

description:
  HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.


pkgId: 234819c9ab7251ed22f6db2056f5502cdb22c08cf7010e9d0cc5ed476553b273
name: gensoft-hhsuite-3.2.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 3427a2e59953
rpm_sourcerpm: gensoft-hhsuite-3.2.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-hhsuite-3.2.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).

description:
  The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).


pkgId: e992eb4ad624cf9b44be9b38e019bedbd37614bb04f9a3e43837235142ead9ff
name: gensoft-hicstuff-3.1.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dram
rpm_sourcerpm: gensoft-hicstuff-3.1.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-hicstuff-3.1.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  A lightweight library that generates and handles Hi-C contact maps in either cooler-compatible 2Dbedgraph or instaGRAAL format

description:
  A lightweight library that generates and handles Hi-C contact maps in either cooler-compatible 2Dbedgraph or instaGRAAL format


pkgId: cac0e3594139dad967bbfe67230cabc33e0807fb920283c22dfff4511649ca18
name: gensoft-hisat2-2.1.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 7aa5883b5935
rpm_sourcerpm: gensoft-hisat2-2.1.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-hisat2-2.1.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).

description:
  HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).


pkgId: c1decc3d58b45328abae9f25e9f0b5d1fe91248d92186853cda0ed4d679a0e32
name: gensoft-hlahd-1.3.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 44c2b247019e
rpm_sourcerpm: gensoft-hlahd-1.3.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-hlahd-1.3.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  HLA-HD (HLA typing from High-quality Dictionary) can accurately determine HLA alleles with 6-digit precision from NGS data (fastq format). RNA-Seq data can also be applied.

description:
  HLA-HD (HLA typing from High-quality Dictionary) can accurately determine HLA alleles with 6-digit precision from NGS data (fastq format). RNA-Seq data can also be applied.


pkgId: c924c3f1333b452b31e94812537ce901346372f1cc082265f99a24d9f0451f05
name: gensoft-hmmer-2.3.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-hmmer-2.3.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-hmmer-2.3.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  An implementation of profile HMM methods for sensitive database searches using multiple sequence alignments as queries

description:
  An implementation of profile HMM methods for sensitive database searches using multiple sequence alignments as queries


pkgId: ff6036a77933aa5f0478324a24932723df66435c6d1f6cc9abae37d986a58145
name: gensoft-homopolish-0.4.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-homopolish-0.4.1-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-homopolish-0.4.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a genome polisher originally developed for Nanopore and subsequently extended for PacBio CLR. It generates a high-quality genome (>Q50) for virus, bacteria, and fungus.

description:
  a genome polisher originally developed for Nanopore and subsequently extended for PacBio CLR. It generates a high-quality genome (>Q50) for virus, bacteria, and fungus.


pkgId: 373061df975ff56d421055d6c22360fbb105f639aab9e590d0252b1839c17fba
name: gensoft-hops-0.35
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d412920eb030
rpm_sourcerpm: gensoft-hops-0.35-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-hops-0.35-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a java pipeline which focuses on screening MALT data for the presence of a user-specified list of target species

description:
  a java pipeline which focuses on screening MALT data for the presence of a user-specified list of target species


pkgId: f3a46cf25bf828a9087cba4e8703e2b55002f476e87beaeb6c4f7b5cfa2d785f
name: gensoft-htqc-1.92.3
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: c4d1aa11e2b5
rpm_sourcerpm: gensoft-htqc-1.92.3-3.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-htqc-1.92.3-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Quality control and filtration for illumina sequencing data A toolkit including statistics tool for illumina high-throughput sequencing data, and filtration tools for sequence quality, length, tail quality, etc..

description:
  Quality control and filtration for illumina sequencing data A toolkit including statistics tool for illumina high-throughput sequencing data, and filtration tools for sequence quality, length, tail quality, etc..


pkgId: a3b13529ee347ecb8b15c6430e5b5915fa797cac67431000951f09cdf8543609
name: gensoft-htslib-1.10
arch: x86_64
version: 3.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: bwa
rpm_sourcerpm: gensoft-htslib-1.10-3.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-htslib-1.10-3.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a C library for high-throughput sequencing data formats. It is designed for speed and works with both VCF and BCFv2

description:
  a C library for high-throughput sequencing data formats. It is designed for speed and works with both VCF and BCFv2


pkgId: 79d8081d882df1155c81ab07e8d99281038dbb20d506a24236a7384e30d95ad8
name: gensoft-iCLIPro-0.1.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ad7c00b4e6e6
rpm_sourcerpm: gensoft-iCLIPro-0.1.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-iCLIPro-0.1.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  iCLIPro is a Python package that can be used to control for systematic misassignments in iCLIP data.

description:
  iCLIPro is a Python package that can be used to control for systematic misassignments in iCLIP data.


pkgId: 3edaa698ca6809655c3b4d3002a126942faa6c711c8e146ecef54a08f155b7d0
name: gensoft-icu-65.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b0f58d9126d4
rpm_sourcerpm: gensoft-icu-65.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-icu-65.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.

description:
  ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.


pkgId: f3f901a3ec09509888d7ba0d67a785ebd7a911bb380f35fe894f81a483d6a63c
name: gensoft-idba-1.1.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 13f56cc702a6
rpm_sourcerpm: gensoft-idba-1.1.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-idba-1.1.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth. It is an extension of IDBA algorithm. IDBA-UD also iterates from small k to a large k.

description:
  IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth. It is an extension of IDBA algorithm. IDBA-UD also iterates from small k to a large k.


pkgId: d7ea3076e7934e1f997ff713d35298d2fbc8d94651dd3ab904742c90ed63bea4
name: gensoft-idr-2.0.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-idr-2.0.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-idr-2.0.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  The IDR (Irreproducible Discovery Rate) framework is a unifed approach to measure the reproducibility of findings identifed from replicate experiments and provide highly stable thresholds based on reproducibility.

description:
  The IDR (Irreproducible Discovery Rate) framework is a unifed approach to measure the reproducibility of findings identifed from replicate experiments and provide highly stable thresholds based on reproducibility.


pkgId: cc8f52115867112d1c7e2f48cab2f29f1c1c9caa59252c42f686c6d3994d22ac
name: gensoft-igblast-1.15.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-igblast-1.15.0-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-igblast-1.15.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  IgBLAST was developed at NCBI to facilitate analysis of immunoglobulin variable domain sequences (IgBLAST has recently been extended to perform analysis for T cell receptor (TR) sequences)

description:
  IgBLAST was developed at NCBI to facilitate analysis of immunoglobulin variable domain sequences (IgBLAST has recently been extended to perform analysis for T cell receptor (TR) sequences)


pkgId: 653480127fd16969cc45afdc3bfdeeb8ba4d406eb00d791fec4bc86239375e22
name: gensoft-inparanoid-4.1
arch: x86_64
version: 4.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: d0287409c65f
rpm_sourcerpm: gensoft-inparanoid-4.1-4.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-inparanoid-4.1-4.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. This program package detects complex orthologous relationships between the protein sequences from different genomes. It uses BLAST scores to measure relatedness of proteins

description:
  Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. This program package detects complex orthologous relationships between the protein sequences from different genomes. It uses BLAST scores to measure relatedness of proteins


pkgId: d8926cd7bfe0c948591fcf6fc5ea1836ce7eb88f5eb909d9cf6e15999a8e2699
name: gensoft-iphop-1.3.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: panarevert
rpm_sourcerpm: gensoft-iphop-1.3.3-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-iphop-1.3.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  iPHoP (integrated Phage Host Prediction) is an automated command-line pipeline for predicting host genus of novel bacteriophages and archaeoviruses based on their genome sequences.

description:
  iPHoP (integrated Phage Host Prediction) is an automated command-line pipeline for predicting host genus of novel bacteriophages and archaeoviruses based on their genome sequences.


pkgId: 626b198150738d6fbcfe00c814ebbfc569bd2eea50148bdba989effe24d5aa0b
name: gensoft-iva-1.0.9
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 0f9642f49d56
rpm_sourcerpm: gensoft-iva-1.0.9-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-iva-1.0.9-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  IVA (Iterative Virus Assembler) is a _de novo_ assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high and variable depth.

description:
  IVA (Iterative Virus Assembler) is a _de novo_ assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high and variable depth.


pkgId: 4d6c51fb546d13f0d299410c107543293920376806b591ea1738262a4a006935
name: gensoft-ivar-1.0.1
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 89bd2f28dad0
rpm_sourcerpm: gensoft-ivar-1.0.1-2.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-ivar-1.0.1-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates.

description:
  iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates.


pkgId: 0ed243142ee6d64f1f5cfb085a3acb3075c2f847640743f8f08bcd39942fac12
name: gensoft-jasper-2.0.23
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 2585e4c2a97b
rpm_sourcerpm: gensoft-jasper-2.0.23-2.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-jasper-2.0.23-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  JasPer is a software toolkit for the handling of image data. The software provides a means for representing images, and facilitates the manipulation of image data, as well as the import/export of such data in numerous formats (e.g., JPEG-2000 JP2, JPEG, PNM, BMP, Sun Rasterfile, and PGX).

description:
  JasPer is a software toolkit for the handling of image data. The software provides a means for representing images, and facilitates the manipulation of image data, as well as the import/export of such data in numerous formats (e.g., JPEG-2000 JP2, JPEG, PNM, BMP, Sun Rasterfile, and PGX).


pkgId: bef9a0c4b00a43e3d92e55a8869ce00c50625a2ca03af84d264363ea2ecf28e6
name: gensoft-jbigkit-2.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: ac6301948576
rpm_sourcerpm: gensoft-jbigkit-2.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-jbigkit-2.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.

description:
  JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.


pkgId: d51e2168b7499cc7edd1887de3b1ae47b3bafc24611154a05aa647e92fe795d0
name: gensoft-jemalloc-5.2.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: b04f8fa9a618
rpm_sourcerpm: gensoft-jemalloc-5.2.1-1.0-1.src.rpm
rpm_packager: hpc@pasteur.fr
location_href: gensoft-jemalloc-5.2.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  a general purpose malloc implementation that emphasizes fragmentation avoidance and scalable concurrency support

description:
  a general purpose malloc implementation that emphasizes fragmentation avoidance and scalable concurrency support


pkgId: d094b054c8bdf988b1954bcf9e172e90fa6097ccc6c4167f3b2e2dd6fe799a00
name: gensoft-jitterbug-b6b3f9c
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: 07d5619fe192
rpm_sourcerpm: gensoft-jitterbug-b6b3f9c-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-jitterbug-b6b3f9c-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference.

description:
  jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference.


pkgId: 6a12f4ed8a17490e5701aa75e5d7b456eb6c908cc24d353abf05a1db4875326a
name: gensoft-joinx-1.12.0
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a81972a53469
rpm_sourcerpm: gensoft-joinx-1.12.0-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-joinx-1.12.0-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Joinx is a lightweight tool for performing operations (e.g., intersection, difference, on genomic data contained in vcf and .bed files. It also provides some limited analysis functions (concordance reports). An important assumption that joinx makes is that the input data is always sorted. This allows it to compute its results in an efficient manner.

description:
  Joinx is a lightweight tool for performing operations (e.g., intersection, difference, on genomic data contained in vcf and .bed files. It also provides some limited analysis functions (concordance reports). An important assumption that joinx makes is that the input data is always sorted. This allows it to compute its results in an efficient manner.


pkgId: 8b0f51998d2592ed047d6b75ca1091720ecf481fa2f6ba2c3bc9b0f067294c1c
name: gensoft-json-c-0.18
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: rpmmaker
rpm_sourcerpm: gensoft-json-c-0.18-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-json-c-0.18-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects. It aims to conform to RFC 8259.

description:
  JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects. It aims to conform to RFC 8259.


pkgId: 716608116d4ef4a981b8f282d688eda0ee7c34e40c8c69e5d6311adfaa12e2f0
name: gensoft-jsoncpp-1.9.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: dd3fba203b40
rpm_sourcerpm: gensoft-jsoncpp-1.9.2-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-jsoncpp-1.9.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.

description:
  JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.


pkgId: 531e7aa4ad6a8f9d39ef573ec4a91a61e26a6e5ec6079df30e1e05a4c7d7eb1c
name: gensoft-jspecies-1.2.1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: aa0d9b206d38
rpm_sourcerpm: gensoft-jspecies-1.2.1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-jspecies-1.2.1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  JSpecies is an easy to use, biologist-centric software designed to measure the probability if two genomes belonging to the same species or not.

description:
  JSpecies is an easy to use, biologist-centric software designed to measure the probability if two genomes belonging to the same species or not.


pkgId: cfd1ebd3b040d81274101c7794754193635174195c0a8a6e55c8eaeabd68a0dd
name: gensoft-julia-0.6.2
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: quarto
rpm_sourcerpm: gensoft-julia-0.6.2-1.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-julia-0.6.2-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  high-level, high-performance dynamic programming language for numerical computing. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library.

description:
  high-level, high-performance dynamic programming language for numerical computing. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library.


pkgId: 400e724ecb8bc6bb8d66aed7e7a9541d6fd74145bad0c0b2460791c26eeff979
name: gensoft-kSNP3-1
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: a7a7e301de8c
rpm_sourcerpm: gensoft-kSNP3-1-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-kSNP3-1-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  kSNP identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs. SNP discovery is based on k-mer analysis, and requires no multiple sequence alignment or the selection of a reference genome, so kSNP can take 100s of microbial genomes as input. A SNP locus is defined by an oligo of length k surrounding a central SNP allele. kSNP can analyze both complete (finished) genomes and unfinished genomes in assembled contigs or raw, unassembled reads. Finished and unfinished genomes can be analyzed together, and kSNP can automatically download Genbank files of the finished genomes and incorporate the information in those files into the SNP annotation

description:
  kSNP identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs. SNP discovery is based on k-mer analysis, and requires no multiple sequence alignment or the selection of a reference genome, so kSNP can take 100s of microbial genomes as input. A SNP locus is defined by an oligo of length k surrounding a central SNP allele. kSNP can analyze both complete (finished) genomes and unfinished genomes in assembled contigs or raw, unassembled reads. Finished and unfinished genomes can be analyzed together, and kSNP can automatically download Genbank files of the finished genomes and incorporate the information in those files into the SNP annotation


pkgId: 17e8fda454bf3e57b761f5768377034f1bcc68361ea261f4e63d8aa478b06b02
name: gensoft-kaiju-1.7.3
arch: x86_64
version: 1.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: bda34e5dbee0
rpm_sourcerpm: gensoft-kaiju-1.7.3-1.0-1.src.rpm
rpm_packager: edeveaud@pasteur.fr
location_href: gensoft-kaiju-1.7.3-1.0-1.x86_64.rpm
checksum_type: sha256
summary:
  Kaiju is a program for sensitive taxonomic classification of high-throughput sequencing reads from metagenomic whole genome sequencing or metatranscriptomics experiments. `

description:
  Kaiju is a program for sensitive taxonomic classification of high-throughput sequencing reads from metagenomic whole genome sequencing or metatranscriptomics experiments. `


pkgId: 8b24337688b118c6b84df0ca8145540598bd6d480099efe11f4e164ac9e93a59
name: gensoft-kallisto-0.46.2
arch: x86_64
version: 2.0
epoch: 0
release: 1
url: http://example.com/no-uri-given
rpm_license: unknown
rpm_vendor: Institut Pasteur
rpm_group: default
rpm_buildhost: build
rpm_sourcerpm: gensoft-kallisto-0.46.2-2.0-1.src.rpm
rpm_packager: gensoft@pasteur.fr
location_href: gensoft-kallisto-0.46.2-2.0-1.x86_64.rpm
checksum_type: sha256
summary:
  kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.

description:
  kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.


