2Dfold.h File Reference

MFE structures for base pair distance classes. More...

Include dependency graph for 2Dfold.h:

Go to the source code of this file.

Data Structures
struct	vrna_sol_TwoD_t
	Solution element returned from vrna_mfe_TwoD() More...
struct	TwoDfold_vars
	Variables compound for 2Dfold MFE folding. More...

Typedefs
typedef struct vrna_sol_TwoD_t	vrna_sol_TwoD_t
	Solution element returned from vrna_mfe_TwoD() More...
typedef struct TwoDfold_vars	TwoDfold_vars
	Variables compound for 2Dfold MFE folding. More...

Functions
vrna_sol_TwoD_t *	vrna_mfe_TwoD (vrna_fold_compound_t *vc, int distance1, int distance2)
	Compute MFE's and representative for distance partitioning. More...
char *	vrna_backtrack5_TwoD (vrna_fold_compound_t *vc, int k, int l, unsigned int j)
	Backtrack a minimum free energy structure from a 5' section of specified length. More...
TwoDfold_vars *	get_TwoDfold_variables (const char *seq, const char *structure1, const char *structure2, int circ)
	Get a structure of type TwoDfold_vars prefilled with current global settings. More...
void	destroy_TwoDfold_variables (TwoDfold_vars *our_variables)
	Destroy a TwoDfold_vars datastructure without memory loss. More...
vrna_sol_TwoD_t *	TwoDfoldList (TwoDfold_vars *vars, int distance1, int distance2)
	Compute MFE's and representative for distance partitioning. More...
char *	TwoDfold_backtrack_f5 (unsigned int j, int k, int l, TwoDfold_vars *vars)
	Backtrack a minimum free energy structure from a 5' section of specified length. More...

Detailed Description

MFE structures for base pair distance classes.