Functions to process, convert, and generally handle different nucleotide and/or base pair alphabets. More...

Include dependency graph for alphabet.h:

This graph shows which files directly or indirectly include this file:

Functions
char *	vrna_ptypes (const short S, vrna_md_t md)
	Get an array of the numerical encoding for each possible base pair (i,j) More...

short *	vrna_seq_encode (const char sequence, vrna_md_t md)
	Get a numerical representation of the nucleotide sequence.

short *	vrna_seq_encode_simple (const char sequence, vrna_md_t md)
	Get a numerical representation of the nucleotide sequence (simple version)

int	vrna_nucleotide_encode (char c, vrna_md_t *md)
	Encode a nucleotide character to numerical value. More...

char	vrna_nucleotide_decode (int enc, vrna_md_t *md)
	Decode a numerical representation of a nucleotide back into nucleotide alphabet. More...

Detailed Description

Functions to process, convert, and generally handle different nucleotide and/or base pair alphabets.

,