centroid.h

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#ifndef VIENNA_RNA_PACKAGE_CENTROID_H
#define VIENNA_RNA_PACKAGE_CENTROID_H

#include <ViennaRNA/datastructures/basic.h>
#include <ViennaRNA/fold_compound.h>
#include <ViennaRNA/utils/structures.h>

#ifdef VRNA_WARN_DEPRECATED
# if defined(__clang__)
#  define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
# elif defined(__GNUC__)
#  define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
# else
#  define DEPRECATED(func, msg) func
# endif
#else
# define DEPRECATED(func, msg) func
#endif

char *
vrna_centroid(vrna_fold_compound_t  *vc,
              double                *dist);


char *
vrna_centroid_from_plist(int        length,
                         double     *dist,
                         vrna_ep_t  *pl);


char *
vrna_centroid_from_probs(int        length,
                         double     *dist,
                         FLT_OR_DBL *probs);


#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY

DEPRECATED(char *get_centroid_struct_pl(int       length,
                                        double    *dist,
                                        vrna_ep_t *pl),
           "Use vrna_centroid_from_plist() instead");

DEPRECATED(char *get_centroid_struct_pr(int         length,
                                        double      *dist,
                                        FLT_OR_DBL  *pr),
           "Use vrna_centroid_from_probs() instead");

#endif

#endif