basic.h File Reference
Various data structures and pre-processor macros. More...
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Data Structures | |
| struct | vrna_basepair_s |
| Base pair data structure used in subopt.c. More... | |
| struct | vrna_cpair_s |
| this datastructure is used as input parameter in functions of PS_dot.c More... | |
| struct | vrna_color_s |
| struct | vrna_data_linear_s |
| struct | vrna_sect_s |
| Stack of partial structures for backtracking. More... | |
| struct | vrna_bp_stack_s |
| Base pair stack element. More... | |
| struct | pu_contrib |
| contributions to p_u More... | |
| struct | interact |
| interaction data structure for RNAup More... | |
| struct | pu_out |
| Collection of all free_energy of beeing unpaired values for output. More... | |
| struct | constrain |
| constraints for cofolding More... | |
| struct | duplexT |
| Data structure for RNAduplex. More... | |
| struct | node |
| Data structure for RNAsnoop (fold energy list) More... | |
| struct | snoopT |
| Data structure for RNAsnoop. More... | |
| struct | dupVar |
| Data structure used in RNApkplex. More... | |
Typedefs | |
| typedef struct vrna_basepair_s | vrna_basepair_t |
| Typename for the base pair repesenting data structure vrna_basepair_s. | |
| typedef struct vrna_elem_prob_s | vrna_plist_t |
| Typename for the base pair list repesenting data structure vrna_elem_prob_s. | |
| typedef struct vrna_bp_stack_s | vrna_bp_stack_t |
| Typename for the base pair stack repesenting data structure vrna_bp_stack_s. | |
| typedef struct vrna_cpair_s | vrna_cpair_t |
| Typename for data structure vrna_cpair_s. | |
| typedef struct vrna_sect_s | vrna_sect_t |
| Typename for stack of partial structures vrna_sect_s. | |
| typedef double | FLT_OR_DBL |
| Typename for floating point number in partition function computations. | |
| typedef struct vrna_basepair_s | PAIR |
| Old typename of vrna_basepair_s. More... | |
| typedef struct vrna_elem_prob_s | plist |
| Old typename of vrna_elem_prob_s. More... | |
| typedef struct vrna_cpair_s | cpair |
| Old typename of vrna_cpair_s. More... | |
| typedef struct vrna_sect_s | sect |
| Old typename of vrna_sect_s. More... | |
| typedef struct vrna_bp_stack_s | bondT |
| Old typename of vrna_bp_stack_s. More... | |
| typedef struct pu_contrib | pu_contrib |
| contributions to p_u | |
| typedef struct interact | interact |
| interaction data structure for RNAup | |
| typedef struct pu_out | pu_out |
| Collection of all free_energy of beeing unpaired values for output. | |
| typedef struct constrain | constrain |
| constraints for cofolding | |
| typedef struct node | folden |
| Data structure for RNAsnoop (fold energy list) | |
| typedef struct dupVar | dupVar |
| Data structure used in RNApkplex. | |
Functions | |
| void | vrna_C11_features (void) |
| Dummy symbol to check whether the library was build using C11/C++11 features. More... | |
Detailed Description
Various data structures and pre-processor macros.
