cofold.h File Reference

MFE implementations for RNA-RNA interaction. More...

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Functions
float	cofold (const char *sequence, char *structure)
	Compute the minimum free energy of two interacting RNA molecules. More...
float	cofold_par (const char *string, char *structure, vrna_param_t *parameters, int is_constrained)
	Compute the minimum free energy of two interacting RNA molecules. More...
void	free_co_arrays (void)
	Free memory occupied by cofold() More...
void	update_cofold_params (void)
	Recalculate parameters. More...
void	update_cofold_params_par (vrna_param_t *parameters)
	Recalculate parameters. More...
void	export_cofold_arrays_gq (int **f5_p, int **c_p, int **fML_p, int **fM1_p, int **fc_p, int **ggg_p, int **indx_p, char **ptype_p)
	Export the arrays of partition function cofold (with gquadruplex support) More...
void	export_cofold_arrays (int **f5_p, int **c_p, int **fML_p, int **fM1_p, int **fc_p, int **indx_p, char **ptype_p)
	Export the arrays of partition function cofold. More...
void	get_monomere_mfes (float *e1, float *e2)
	get_monomer_free_energies More...
void	initialize_cofold (int length)

Detailed Description

MFE implementations for RNA-RNA interaction.