Functions to deal with standard dynamic programming (DP) matrices. More...

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Data Structures
struct	vrna_mx_mfe_s
	Minimum Free Energy (MFE) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound_t. More...

struct	vrna_mx_pf_s
	Partition function (PF) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound_t. More...

Typedefs
typedef struct vrna_mx_mfe_s	vrna_mx_mfe_t
	Typename for the Minimum Free Energy (MFE) DP matrices data structure vrna_mx_mfe_s.

typedef struct vrna_mx_pf_s	vrna_mx_pf_t
	Typename for the Partition Function (PF) DP matrices data structure vrna_mx_pf_s.

Enumerations

Functions
int	vrna_mx_add (vrna_fold_compound_t *vc, vrna_mx_type_e type, unsigned int options)
	Add Dynamic Programming (DP) matrices (allocate memory) More...

void	vrna_mx_mfe_free (vrna_fold_compound_t *vc)
	Free memory occupied by the Minimum Free Energy (MFE) Dynamic Programming (DP) matrices. More...

void	vrna_mx_pf_free (vrna_fold_compound_t *vc)
	Free memory occupied by the Partition Function (PF) Dynamic Programming (DP) matrices. More...

Detailed Description

Functions to deal with standard dynamic programming (DP) matrices.