duplex.h

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#ifndef VIENNA_RNA_PACKAGE_DUPLEX_H
#define VIENNA_RNA_PACKAGE_DUPLEX_H

#include <ViennaRNA/datastructures/basic.h>

#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY

duplexT duplexfold(const char *s1,
                   const char *s2);


duplexT *duplex_subopt(const char *s1,
                       const char *s2,
                       int        delta,
                       int        w);


duplexT aliduplexfold(const char  *s1[],
                      const char  *s2[]);


duplexT *aliduplex_subopt(const char  *s1[],
                          const char  *s2[],
                          int         delta,
                          int         w);


#endif

#endif