equilibrium_probs.h File Reference
Equilibrium Probability implementations. More...
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Functions | |
| void | vrna_pf_dimer_probs (double FAB, double FA, double FB, vrna_ep_t *prAB, const vrna_ep_t *prA, const vrna_ep_t *prB, int Alength, const vrna_exp_param_t *exp_params) |
| Compute Boltzmann probabilities of dimerization without homodimers. More... | |
| double | vrna_pr_structure (vrna_fold_compound_t *fc, const char *structure) |
| Compute the equilibrium probability of a particular secondary structure. More... | |
| double | vrna_pr_energy (vrna_fold_compound_t *vc, double e) |
Base pair related probability computations | |
| double | vrna_mean_bp_distance_pr (int length, FLT_OR_DBL *pr) |
| Get the mean base pair distance in the thermodynamic ensemble from a probability matrix. More... | |
| double | vrna_mean_bp_distance (vrna_fold_compound_t *vc) |
| Get the mean base pair distance in the thermodynamic ensemble. More... | |
| double | vrna_ensemble_defect (vrna_fold_compound_t *fc, const char *structure) |
| Compute the Ensemble Defect for a given target structure. More... | |
| double * | vrna_positional_entropy (vrna_fold_compound_t *fc) |
| Compute a vector of positional entropies. More... | |
| vrna_ep_t * | vrna_stack_prob (vrna_fold_compound_t *vc, double cutoff) |
| Compute stacking probabilities. More... | |
Detailed Description
Equilibrium Probability implementations.
This file includes various implementations for equilibrium probability computations based on the partition function of an RNA sequence, two concatenated sequences, or a sequence alignment.
Function Documentation
| double vrna_pr_energy | ( | vrna_fold_compound_t * | fc, |
| double | e | ||
| ) |
- SWIG Wrapper Notes:
- This function is attached as method pr_energy() to objects of type fold_compound
