Deprecated Interface for Local (Sliding Window) MFE Prediction

Detailed Description

Collaboration diagram for Deprecated Interface for Local (Sliding Window) MFE Prediction:

Files
file	Lfold.h
	Functions for locally optimal MFE structure prediction.

Functions
float	Lfold (const char *string, const char *structure, int maxdist)
	The local analog to fold(). More...
float	Lfoldz (const char *string, const char *structure, int maxdist, int zsc, double min_z)

Function Documentation

float Lfold	(	const char *	string,
		const char *	structure,
		int	maxdist
	)

#include <ViennaRNA/Lfold.h>

The local analog to fold().

Computes the minimum free energy structure including only base pairs with a span smaller than 'maxdist'

Deprecated:

Use vrna_mfe_window() instead!

float Lfoldz	(	const char *	string,
		const char *	structure,
		int	maxdist,
		int	zsc,
		double	min_z
	)

#include <ViennaRNA/Lfold.h>

Deprecated:

Use vrna_mfe_window_zscore() instead!