Detailed Description

Collaboration diagram for Helix List Representation of Secondary Structures:

Data Structures
struct	vrna_hx_s
	Data structure representing an entry of a helix list. More...

Typedefs
typedef struct vrna_hx_s	vrna_hx_t
	Convenience typedef for data structure vrna_hx_s.

Functions
vrna_hx_t *	vrna_hx_from_ptable (short *pt)
	Convert a pair table representation of a secondary structure into a helix list. More...

vrna_hx_t *	vrna_hx_merge (const vrna_hx_t *list, int maxdist)
	Create a merged helix list from another helix list.

Data Structure Documentation

struct vrna_hx_s

Data structure representing an entry of a helix list.

vrna_hx_t* vrna_hx_from_ptable ( short * pt )

Convert a pair table representation of a secondary structure into a helix list.

Parameters

pt	The secondary structure in pair table representation