Energy evaluation of interior loops for MFE and partition function calculations. More...
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Functions | |
| int | vrna_BT_stack (vrna_fold_compound_t *fc, int *i, int *j, int *en, vrna_bp_stack_t *bp_stack, int *stack_count) |
Backtrack a stacked pair closed by  . | |
| int | vrna_BT_int_loop (vrna_fold_compound_t *fc, int *i, int *j, int en, vrna_bp_stack_t *bp_stack, int *stack_count) |
| Backtrack an interior loop closed by . | |
| PRIVATE int | E_IntLoop (int n1, int n2, int type, int type_2, int si1, int sj1, int sp1, int sq1, vrna_param_t *P) |
| PRIVATE FLT_OR_DBL | exp_E_IntLoop (int u1, int u2, int type, int type2, short si1, short sj1, short sp1, short sq1, vrna_exp_param_t *P) |
Basic free energy interface | |
| int | vrna_E_int_loop (vrna_fold_compound_t *fc, int i, int j) |
| int | vrna_eval_int_loop (vrna_fold_compound_t *fc, int i, int j, int k, int l) |
Evaluate the free energy contribution of an interior loop with delimiting base pairs  and  . More... | |
| int | vrna_E_ext_int_loop (vrna_fold_compound_t *fc, int i, int j, int *ip, int *iq) |
| int | vrna_E_stack (vrna_fold_compound_t *fc, int i, int j) |
Boltzmann weight (partition function) interface | |
| FLT_OR_DBL | vrna_exp_E_int_loop (vrna_fold_compound_t *fc, int i, int j) |
| FLT_OR_DBL | vrna_exp_E_interior_loop (vrna_fold_compound_t *fc, int i, int j, int k, int l) |
Detailed Description
Energy evaluation of interior loops for MFE and partition function calculations.
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