Read and write different file formats for RNA sequences, structures. More...

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Macros
#define	VRNA_OPTION_MULTILINE 32U
	Tell a function that an input is assumed to span several lines. More...

#define	VRNA_CONSTRAINT_MULTILINE 32U
	parse multiline constraint More...

Functions
void	vrna_file_helixlist (const char seq, const char db, float energy, FILE *file)
	Print a secondary structure as helix list. More...

void	vrna_file_connect (const char seq, const char db, float energy, const char identifier, FILE file)
	Print a secondary structure as connect table. More...

void	vrna_file_bpseq (const char seq, const char db, FILE *file)
	Print a secondary structure in bpseq format. More...

void	vrna_file_json (const char seq, const char db, double energy, const char identifier, FILE file)
	Print a secondary structure in jsonformat. More...

unsigned int	vrna_file_fasta_read_record (char header, char sequence, char **rest, FILE file, unsigned int options)
	Get a (fasta) data set from a file or stdin. More...

char *	vrna_extract_record_rest_structure (const char **lines, unsigned int length, unsigned int option)
	Extract a dot-bracket structure string from (multiline)character array. More...

int	vrna_file_SHAPE_read (const char file_name, int length, double default_value, char sequence, double *values)
	Read data from a given SHAPE reactivity input file. More...

void	vrna_extract_record_rest_constraint (char cstruc, const char lines, unsigned int option)
	Extract a hard constraint encoded as pseudo dot-bracket string. More...

unsigned int	read_record (char header, char sequence, char ***rest, unsigned int options)
	Get a data record from stdin. More...

Detailed Description

Read and write different file formats for RNA sequences, structures.

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Macros