Compute Minimum Free energy (MFE) and backtrace corresponding secondary structures from RNA sequence data. More...

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Functions
float	vrna_backtrack5 (vrna_fold_compound_t fc, unsigned int length, char structure)
	Backtrack an MFE (sub)structure. More...

Basic global MFE prediction interface
float	vrna_mfe (vrna_fold_compound_t vc, char structure)
	Compute minimum free energy and an appropriate secondary structure of an RNA sequence, or RNA sequence alignment. More...

float	vrna_mfe_dimer (vrna_fold_compound_t vc, char structure)
	Compute the minimum free energy of two interacting RNA molecules. More...

Simplified global MFE prediction using sequence(s) or multiple sequence alignment(s)
float	vrna_fold (const char sequence, char structure)
	Compute Minimum Free Energy (MFE), and a corresponding secondary structure for an RNA sequence. More...

float	vrna_circfold (const char sequence, char structure)
	Compute Minimum Free Energy (MFE), and a corresponding secondary structure for a circular RNA sequence. More...

float	vrna_alifold (const char *sequences, char structure)
	Compute Minimum Free Energy (MFE), and a corresponding consensus secondary structure for an RNA sequence alignment using a comparative method. More...

float	vrna_circalifold (const char *sequences, char structure)
	Compute Minimum Free Energy (MFE), and a corresponding consensus secondary structure for a sequence alignment of circular RNAs using a comparative method. More...

float	vrna_cofold (const char sequence, char structure)
	Compute Minimum Free Energy (MFE), and a corresponding secondary structure for two dimerized RNA sequences. More...

Detailed Description

Compute Minimum Free energy (MFE) and backtrace corresponding secondary structures from RNA sequence data.

, This file includes (almost) all function declarations within the RNAlib that are related to MFE folding...

Functions

Detailed Description