strings.h

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#ifndef VIENNA_RNA_PACKAGE_STRING_UTILS_H
#define VIENNA_RNA_PACKAGE_STRING_UTILS_H

#ifdef VRNA_WARN_DEPRECATED
# if defined(__clang__)
#  define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
# elif defined(__GNUC__)
#  define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
# else
#  define DEPRECATED(func, msg) func
# endif
#else
# define DEPRECATED(func, msg) func
#endif

#include <stdarg.h>
#include <ViennaRNA/datastructures/basic.h>

#define XSTR(s) STR(s)

#define STR(s) #s

#ifndef FILENAME_MAX_LENGTH

#define FILENAME_MAX_LENGTH   80

#define FILENAME_ID_LENGTH    42

#endif

#ifdef HAVE_CONFIG_H
#include <config.h>
#ifndef HAVE_STRDUP
char *strdup(const char *s);


#endif
#endif

char *
vrna_strdup_printf(const char *format,
                   ...);


char *
vrna_strdup_vprintf(const char  *format,
                    va_list     argp);


int
vrna_strcat_printf(char       **dest,
                   const char *format,
                   ...);


int
vrna_strcat_vprintf(char        **dest,
                    const char  *format,
                    va_list     args);


char **
vrna_strsplit(const char  *string,
              const char  *delimiter);


char *
vrna_random_string(int        l,
                   const char symbols[]);


int
vrna_hamming_distance(const char  *s1,
                      const char  *s2);


int
vrna_hamming_distance_bound(const char  *s1,
                            const char  *s2,
                            int         n);


void
vrna_seq_toRNA(char *sequence);


void
vrna_seq_toupper(char *sequence);


char *
vrna_seq_ungapped(const char *seq);


char *
vrna_cut_point_insert(const char  *string,
                      int         cp);


char *
vrna_cut_point_remove(const char  *string,
                      int         *cp);


#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY

DEPRECATED(void  str_uppercase(char *sequence), "Use vrna_seq_toupper() instead");

DEPRECATED(void str_DNA2RNA(char *sequence), "Use vrna_seq_toRNA() instead");

DEPRECATED(char *random_string(int        l,
                               const char symbols[]),
           "Use vrna_random_string() instead");

DEPRECATED(int hamming(const char *s1,
                       const char *s2),
           "Use vrna_hamming_distance() instead");

DEPRECATED(int hamming_bound(const char *s1,
                             const char *s2,
                             int        n),
           "Use vrna_hamming_distance_bound() instead");

#endif

#endif