ViennaRNA

Installation

  • Installation
  • Configuration

Usage and Tutorials:

  • Getting Started
  • Manpages
  • Using RNAlib
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RNAlib API Reference

  • Concepts and Algorithms
    • Free Energy Evaluation
    • The RNA Folding Grammar
    • The RNA Secondary Structure Landscape
    • Minimum Free Energy (MFE) Algorithms
    • Partition Function and Equilibrium Properties
    • Suboptimals and Representative Structures
      • Suboptimal Structures sensu Zuker
      • Suboptimal Structures within an Energy Band around the MFE
      • Random Structure Samples from the Ensemble
      • Compute the Structure with Maximum Expected Accuracy (MEA)
      • Compute the Centroid Structure
    • RNA-RNA Interaction
    • Classified Dynamic Programming Variants
    • Inverse Folding (Design)
    • Experimental Structure Probing Data
    • Ligands Binding to RNA Structures
    • Structure Modules and Pseudoknots
    • Post-transcriptional Base Modifications
    • Utilities
    • RNAlib API v3.0
    • Callback Functions
    • Deprecated List
  • SWIG Wrappers
  • Python API

Miscellaneous

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  • Citation
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  • Contributing
  • License

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ViennaRNA
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  • Concepts and Algorithms »
  • Suboptimals and Representative Structures

Suboptimals and Representative Structures

Sample and enumerate suboptimal secondary structures from RNA sequence data.

Specialized Modules:

  • Suboptimal Structures sensu Zuker
  • Suboptimal Structures within an Energy Band around the MFE
  • Random Structure Samples from the Ensemble
  • Compute the Structure with Maximum Expected Accuracy (MEA)
  • Compute the Centroid Structure
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