ViennaRNA

Installation

  • Installation
  • Configuration

Usage and Tutorials:

  • Getting Started
  • Manpages
  • Using RNAlib
  • I/O Formats

RNAlib API Reference

  • Concepts and Algorithms
    • Free Energy Evaluation
    • The RNA Folding Grammar
    • The RNA Secondary Structure Landscape
      • Neighborhood Relation and Move Sets for Secondary Structures
      • (Re-)folding Paths, Saddle Points, Energy Barriers, and Local Minima
      • Direct Refolding Paths between two Secondary Structures
      • Folding Paths that start at a single Secondary Structure
      • Deprecated Interface for (Re-)folding Paths, Saddle Points, and Energy Barriers
    • Minimum Free Energy (MFE) Algorithms
    • Partition Function and Equilibrium Properties
    • Suboptimals and Representative Structures
    • RNA-RNA Interaction
    • Classified Dynamic Programming Variants
    • Inverse Folding (Design)
    • Experimental Structure Probing Data
    • Ligands Binding to RNA Structures
    • Structure Modules and Pseudoknots
    • Post-transcriptional Base Modifications
    • Utilities
    • RNAlib API v3.0
    • Callback Functions
    • Deprecated List
  • SWIG Wrappers
  • Python API

Miscellaneous

  • What's new
  • Changelog
  • Bibliography
  • Citation
  • FAQ
  • Contributing
  • License

Links

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ViennaRNA
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  • Concepts and Algorithms »
  • The RNA Secondary Structure Landscape

The RNA Secondary Structure Landscape

Specialized Modules:

  • Neighborhood Relation and Move Sets for Secondary Structures
  • (Re-)folding Paths, Saddle Points, Energy Barriers, and Local Minima
  • Direct Refolding Paths between two Secondary Structures
  • Folding Paths that start at a single Secondary Structure
  • Deprecated Interface for (Re-)folding Paths, Saddle Points, and Energy Barriers
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