CompactedDBG.hpp File Reference

Interface for the Compacted de Bruijn graph API. More...

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Data Structures
struct	CDBG_Build_opt
	Most members of this structure are parameters for CompactedDBG<U, G>::build(), except for: More...
class	CDBG_Data_t< Unitig_data_t, Graph_data_t >
	If data are to be associated with the unitigs of the compacted de Bruijn graph, those data must be wrapped into a class that inherits from the abstract class CDBG_Data_t. More...
class	CompactedDBG< Unitig_data_t, Graph_data_t >
	Represent a Compacted de Bruijn graph. More...

Typedefs
template<typename U = void, typename G = void>
using	const_UnitigMap = UnitigMap< U, G, true >
	const_UnitigMap is a constant UnitigMap. More...

Detailed Description

Interface for the Compacted de Bruijn graph API.

Code snippets using this interface are provided in snippets/test.cpp.

Typedef Documentation

const_UnitigMap

template<typename U = void, typename G = void>

const_UnitigMap

const_UnitigMap is a constant UnitigMap.

The main difference in its usage with a UnitigMap object is when you call the method UnitigMap::getGraph(): with a const_UnitigMap, this method returns a pointer to a constant CompactedDBG (you can't modify it).