ForwardCDBG< Unitig_data_t, Graph_data_t, is_const > Class Template Reference

Wrapper for class neighborIterator to iterate over the predecessors of a reference unitig used in a UnitigMap object. More...

Public Member Functions
	ForwardCDBG (const UnitigMap< U, G, is_const > &um_)
	Constructor. More...
bool	hasSuccessors () const
	Check if the unitig has at least one successor. More...
neighborIterator< U, G, is_const >	begin () const
	Return an iterator over the successors of a reference unitig. More...
neighborIterator< U, G, is_const >	end () const
	Return an iterator over the past-the-last successor of a reference unitig. More...

Detailed Description

template<typename Unitig_data_t = void, typename Graph_data_t = void, bool is_const = false>
class ForwardCDBG< Unitig_data_t, Graph_data_t, is_const >

Wrapper for class neighborIterator to iterate over the predecessors of a reference unitig used in a UnitigMap object.

A ForwardCDBG object has 3 template parameters: the type of data associated with the unitigs of the graph, the type of data associated with the graph and a boolean indicating if this is a constant neighborIterator or not. Note that you are supposed to obtain an instance of this class from UnitigMap::getSuccessors() so you shouldn't have to instantiate an object ForwardCDBG and its template parameters yourself. The unitig data and graph data types should be the same as the ones used for the CompactedDBG the iterator is from. No specific order (such as a lexicographic one) is assumed during iteration.

Constructor & Destructor Documentation

ForwardCDBG()

template<typename Unitig_data_t = void, typename Graph_data_t = void, bool is_const = false>

ForwardCDBG< Unitig_data_t, Graph_data_t, is_const >::ForwardCDBG ( const UnitigMap< U, G, is_const > &  um_ )

explicit

Constructor.

Parameters

um_	is a UnitigMap object: the wrapper will provide an iterator over the successors of the UnitigMap reference unitig

Member Function Documentation

begin()

template<typename Unitig_data_t = void, typename Graph_data_t = void, bool is_const = false>

neighborIterator<U, G, is_const> ForwardCDBG< Unitig_data_t, Graph_data_t, is_const >::begin

(

)

const

Return an iterator over the successors of a reference unitig.

The returned iterator is initialized over the first such successor, if there is one.

Returns

an iterator over the successors of a reference unitig. It is initialized over the first such successor, if there is one.

end()

template<typename Unitig_data_t = void, typename Graph_data_t = void, bool is_const = false>

neighborIterator<U, G, is_const> ForwardCDBG< Unitig_data_t, Graph_data_t, is_const >::end

(

)

const

Return an iterator over the past-the-last successor of a reference unitig.

Returns

an iterator over the past-the-last successor of a reference unitig.

hasSuccessors()

template<typename Unitig_data_t = void, typename Graph_data_t = void, bool is_const = false>

bool ForwardCDBG< Unitig_data_t, Graph_data_t, is_const >::hasSuccessors

(

)

const

Check if the unitig has at least one successor.

Returns

a boolean indicating if the unitig has at least one successor (true) or not (false).

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The documentation for this class was generated from the following file:

• src/NeighborIterator.hpp