| CBackwardCDBG< Unitig_data_t, Graph_data_t, is_const > | Wrapper for class neighborIterator to iterate over the predecessors of a reference unitig used in a UnitigMap object |
| CCCDBG_Data_t< Unitig_data_t > | If data are to be associated with the unitigs of the colored and compacted de Bruijn graph, those data must be wrapped into a class that inherits from the abstract class CCDBG_Data_t |
| ▼CCDBG_Build_opt | Most members of this structure are parameters for CompactedDBG<U, G>::build(), except for: |
| CCCDBG_Build_opt | This structure inherits from CDBG_Build_opt and introduces only a few new members which are color-related |
| CCDBG_Data_t< Unitig_data_t, Graph_data_t > | If data are to be associated with the unitigs of the compacted de Bruijn graph, those data must be wrapped into a class that inherits from the abstract class CDBG_Data_t |
| CCompactedDBG< Unitig_data_t, Graph_data_t > | Represent a Compacted de Bruijn graph |
| ▼CCompactedDBG< DataAccessor< void >, DataStorage< void > > | |
| CColoredCDBG< Unitig_data_t > | Represent a Colored and Compacted de Bruijn graph |
| CDataAccessor< Unitig_data_t > | Interface to access the colors and the data associated with a unitig of a ColoredCDBG |
| CDataStorage< Unitig_data_t > | |
| CForwardCDBG< Unitig_data_t, Graph_data_t, is_const > | Wrapper for class neighborIterator to iterate over the predecessors of a reference unitig used in a UnitigMap object |
| ▼Citerator | |
| CneighborIterator< Unitig_data_t, Graph_data_t, is_const > | Iterator for the neighbors (predecessors or successors) of a reference unitig used in a UnitigMap object |
| CUnitigColors::UnitigColors_const_iterator | See UnitigColors::const_iterator |
| CunitigIterator< Unitig_data_t, Graph_data_t, is_const > | Iterator for the unitigs of a Compacted de Bruijn graph |
| CKmer | Interface to store and manipulate k-mers |
| CKmerHash | |
| CUnitig< T > | Represent a unitig which is a vertex of the Compacted de Bruijn graph |
| CUnitigColors | Represent the k-mer color sets of a unitig |
| CUnitigColorsHash | |
| CUnitigMap< Unitig_data_t, Graph_data_t, is_const > | Contain all the information for the mapping of a k-mer or a sequence to a unitig of a Compacted de Bruijn graph |
| CUnitigMap< U, G, false > | |
| CUnitigMapBase | Structure containing the basic information of a unitig mapping |
| CUnitigMapHash< Unitig_data_t, Graph_data_t, is_const > | |
