bpp-core  2.2.0
AttributesTools.h
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1 //
2 // File: AttributesTools.h
3 // Created by: Julien Dutheil
4 // Created on: 2003
5 //
6 
7 /*
8  Copyright or © or Copr. Bio++ Development Tools, (November 17, 2004)
9 
10  This software is a computer program whose purpose is to provide basal and
11  utilitary classes. This file belongs to the Bio++ Project.
12 
13  This software is governed by the CeCILL license under French law and
14  abiding by the rules of distribution of free software. You can use,
15  modify and/ or redistribute the software under the terms of the CeCILL
16  license as circulated by CEA, CNRS and INRIA at the following URL
17  "http://www.cecill.info".
18 
19  As a counterpart to the access to the source code and rights to copy,
20  modify and redistribute granted by the license, users are provided only
21  with a limited warranty and the software's author, the holder of the
22  economic rights, and the successive licensors have only limited
23  liability.
24 
25  In this respect, the user's attention is drawn to the risks associated
26  with loading, using, modifying and/or developing or reproducing the
27  software by the user in light of its specific status of free software,
28  that may mean that it is complicated to manipulate, and that also
29  therefore means that it is reserved for developers and experienced
30  professionals having in-depth computer knowledge. Users are therefore
31  encouraged to load and test the software's suitability as regards their
32  requirements in conditions enabling the security of their systems and/or
33  data to be ensured and, more generally, to use and operate it in the
34  same conditions as regards security.
35 
36  The fact that you are presently reading this means that you have had
37  knowledge of the CeCILL license and that you accept its terms.
38  */
39 
40 #ifndef _ATTRIBUTES_TOOLS_H_
41 #define _ATTRIBUTES_TOOLS_H_
42 
43 #include "../Exceptions.h"
44 
45 // From the STL:
46 #include <cstdlib>
47 #include <map>
48 #include <string>
49 #include <vector>
50 
51 namespace bpp
52 {
128 {
129 public:
131  virtual ~AttributesTools() {}
132 
140  static std::vector<std::string> getVector(int argc, char* argv[]);
141 
151  static std::map<std::string, std::string> getAttributesMap(
152  const std::vector<std::string>& argv,
153  const std::string& delimiter = "=");
154 
164  static void getAttributesMap(
165  const std::vector<std::string>& argv,
166  std::map<std::string, std::string>& am,
167  const std::string& delimiter = "=");
168 
176  static std::map<std::string, std::string> getAttributesMapFromFile(
177  const std::string& file,
178  const std::string& delimiter);
179 
187  static void getAttributesMapFromFile(
188  const std::string& file,
189  std::map<std::string, std::string>& params,
190  const std::string& delimiter);
191 
201  static void actualizeAttributesMap(
202  std::map<std::string, std::string>& attMap,
203  const std::map<std::string, std::string>& atts);
204 
217  static void resolveVariables(std::map<std::string, std::string>& am,
218  char varCode = '$',
219  char varBeg = '(',
220  char varEnd = ')') throw (Exception);
221 
231  static std::map<std::string, std::string> parseOptions(int args, char** argv) throw (Exception);
232 
233 private:
241  static std::string removeComments(const std::string& s, const std::string& begin, const std::string& end);
242 };
243 } // end of namespace bpp.
244 
245 #endif // _ATTRIBUTES_TOOLS_H_
static std::string removeComments(const std::string &s, const std::string &begin, const std::string &end)
Remove comments from a string.
static std::map< std::string, std::string > getAttributesMapFromFile(const std::string &file, const std::string &delimiter)
Get an attribute map from a file.
static std::vector< std::string > getVector(int argc, char *argv[])
Get attributes a vector of strings from command line arguments.
This class allows to perform a correspondence analysis.
static std::map< std::string, std::string > parseOptions(int args, char **argv)
Global function that reads all parameters from command line and files, and set the values in a map...
STL namespace.
static void resolveVariables(std::map< std::string, std::string > &am, char varCode='$', char varBeg='(', char varEnd=')')
Resolve the variables.
Exception base class.
Definition: Exceptions.h:57
static void actualizeAttributesMap(std::map< std::string, std::string > &attMap, const std::map< std::string, std::string > &atts)
Actualizes an attribute map with another.
static std::map< std::string, std::string > getAttributesMap(const std::vector< std::string > &argv, const std::string &delimiter="=")
Get an attribute map from a vector of arguments.
Some functions to deal with attributes, i.e. parameters passed to a program/method.