bpp-core  2.2.0
BfgsMultiDimensions.h
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1 //
2 // File: BfgsMultiDimensions.h
3 // Created by: Laurent Guéguen
4 // Created on: Dec 16 13:49 2010
5 //
6 
7 /*
8  Copyright or © or Copr. Bio++ Development Team, (November 19, 2004)
9 
10  This software is a computer program whose purpose is to provide classes
11  for numerical calculus.
12 
13  This software is governed by the CeCILL license under French law and
14  abiding by the rules of distribution of free software. You can use,
15  modify and/ or redistribute the software under the terms of the CeCILL
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17  "http://www.cecill.info".
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38 */
39 
40 #ifndef _BFGSMULTIDIMENSIONS_H_
41 #define _BFGSMULTIDIMENSIONS_H_
42 
43 #include "AbstractOptimizer.h"
44 #include "DirectionFunction.h"
45 #include "../VectorTools.h"
46 
47 namespace bpp
48 {
49 
60  public AbstractOptimizer
61  {
62  protected:
63  //double gtol_;
64  double slope_;
65 
66  // vectors of the Lower & Upper bounds of the parameters
68 
69  mutable Vdouble p_, gradient_, xi_, dg_, hdg_;
70  mutable VVdouble hessian_;
71 
73 
74 
75  public:
76 
78 
79  virtual ~BfgsMultiDimensions() {}
80 
81  BfgsMultiDimensions* clone() const { return new BfgsMultiDimensions(*this); }
82 
83  public:
84 
91  {
92  return dynamic_cast<const DerivableFirstOrder*>(AbstractOptimizer::getFunction());
93  }
95  {
96  return dynamic_cast<DerivableFirstOrder*>(AbstractOptimizer::getFunction());
97  }
98  void doInit(const ParameterList& params) throw (Exception);
99 
100  double doStep() throw (Exception);
103  void getGradient(std::vector<double>& gradient) const;
104 
105  protected:
107  {
108  return dynamic_cast<DerivableFirstOrder*>(AbstractOptimizer::getFunction_());
109  }
110 
111  private:
116  void setDirection();
117 
118  };
119 
120 } //end of namespace bpp.
121 
122 #endif //_BFGSMULTIDIMENSIONS_H_
123 
BfgsMultiDimensions * clone() const
Create a copy of this object and send a pointer to it.
This class allows to perform a correspondence analysis.
double doStep()
This function is called by the step() method and contains all calculations.
STL namespace.
DerivableFirstOrder * getFunction()
Get the current function being optimized.
The parameter list object.
Definition: ParameterList.h:61
const Function * getFunction() const
Get the current function being optimized.
void doInit(const ParameterList &params)
This function is called by the init() method and contains all calculations.
std::vector< double > Vdouble
Definition: VectorTools.h:67
Broyden–Fletcher–Goldfarb–Shanno (BFGS) optimization method.
Exception base class.
Definition: Exceptions.h:57
Partial implementation of the Optimizer interface.
This is the abstract class for first order derivable functions.
Definition: Functions.h:129
void getGradient(std::vector< double > &gradient) const
BfgsMultiDimensions(DerivableFirstOrder *function)
std::vector< Vdouble > VVdouble
Definition: VectorTools.h:68
DerivableFirstOrder * getFunction_()
const DerivableFirstOrder * getFunction() const
Get the current function being optimized.