bpp-core  2.2.0
ParameterAliasable.h
Go to the documentation of this file.
1 //
2 // File: ParameterAliasable.h
3 // Created by: Julien Dutheil
4 // Created on: Thu May 14 16:53 2009
5 //
6 
7 /*
8  Copyright or © or Copr. Bio++ Development Team, (November 17, 2004)
9 
10  This software is a computer program whose purpose is to provide classes
11  for numerical calculus.
12 
13  This software is governed by the CeCILL license under French law and
14  abiding by the rules of distribution of free software. You can use,
15  modify and/ or redistribute the software under the terms of the CeCILL
16  license as circulated by CEA, CNRS and INRIA at the following URL
17  "http://www.cecill.info".
18 
19  As a counterpart to the access to the source code and rights to copy,
20  modify and redistribute granted by the license, users are provided only
21  with a limited warranty and the software's author, the holder of the
22  economic rights, and the successive licensors have only limited
23  liability.
24 
25  In this respect, the user's attention is drawn to the risks associated
26  with loading, using, modifying and/or developing or reproducing the
27  software by the user in light of its specific status of free software,
28  that may mean that it is complicated to manipulate, and that also
29  therefore means that it is reserved for developers and experienced
30  professionals having in-depth computer knowledge. Users are therefore
31  encouraged to load and test the software's suitability as regards their
32  requirements in conditions enabling the security of their systems and/or
33  data to be ensured and, more generally, to use and operate it in the
34  same conditions as regards security.
35 
36  The fact that you are presently reading this means that you have had
37  knowledge of the CeCILL license and that you accept its terms.
38 */
39 
40 #ifndef _PARAMETERALIASABLE_H_
41 #define _PARAMETERALIASABLE_H_
42 
43 #include "Parametrizable.h"
44 #include "ParameterExceptions.h"
45 #include "ParameterList.h"
46 
47 //From the STL:
48 #include <string>
49 #include <map>
50 
51 namespace bpp
52 {
53 
84  public virtual Parametrizable
85  {
86  public:
88  virtual ~ParameterAliasable() {}
89 
90  public:
91 
98  virtual size_t getNumberOfIndependentParameters() const = 0;
99 
109  virtual void aliasParameters(const std::string & p1, const std::string & p2) throw (ParameterNotFoundException, Exception) = 0;
110 
121  virtual void aliasParameters(std::map<std::string, std::string>& unparsedParams, bool verbose) = 0;
122 
123 
133  virtual void unaliasParameters(const std::string & p1, const std::string & p2) throw (ParameterNotFoundException, Exception) = 0;
134 
142  virtual const ParameterList & getIndependentParameters() const = 0;
143 
149  virtual std::vector<std::string> getAlias(const std::string& name) const = 0;
150  };
151 
152 
153 
154 
161  public ParametrizableAdapter
162  {
163  public:
166 
167  public:
168 
175  void aliasParameters(const std::string & p1, const std::string & p2) throw (ParameterNotFoundException, Exception) {}
176  void unaliasParameters(const std::string & p1, const std::string & p2) throw (ParameterNotFoundException, Exception) {}
177  unsigned int getNumberOfIndependentParameters() const{ return 0; }
178  std::vector<std::string> getAlias(const std::string& name) const { return std::vector<std::string>(); }
181  };
182 
183 } // end of namespace bpp.
184 
185 #endif // _PARAMETERALIASABLE_H_
186 
virtual size_t getNumberOfIndependentParameters() const =0
Get the number of independent parameters.
Exception thrown when a parameter is not found, for instance in a ParameterList.
Extend the Parametrizable interface with support for parameter aliases.
This class allows to perform a correspondence analysis.
virtual std::vector< std::string > getAlias(const std::string &name) const =0
std::vector< std::string > getAlias(const std::string &name) const
virtual void aliasParameters(const std::string &p1, const std::string &p2)=0
Set two parameters as &#39;aliased&#39;.
A low-level implementation of the Parametrizable interface with void functions.
This is the interface for all objects that imply parameters.
The parameter list object.
Definition: ParameterList.h:61
const ParameterList & getIndependentParameters() const
A low-level implementation of the ParameterAliasable interface with void functions.
const ParameterList & getParameters() const
Get all parameters available.
virtual const ParameterList & getIndependentParameters() const =0
Get the minimal list of parameters to set the model.
unsigned int getNumberOfIndependentParameters() const
Exception base class.
Definition: Exceptions.h:57
virtual void unaliasParameters(const std::string &p1, const std::string &p2)=0
Detach two parameters previously set as &#39;aliased&#39;.
void aliasParameters(const std::string &p1, const std::string &p2)
void unaliasParameters(const std::string &p1, const std::string &p2)