bpp::AbstractDistanceEstimationMafIterator Class Reference

Partial implementation for distance estimation iterator. More...

#include <Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h>

Inheritance diagram for bpp::AbstractDistanceEstimationMafIterator:

Collaboration diagram for bpp::AbstractDistanceEstimationMafIterator:

Public Member Functions
	AbstractDistanceEstimationMafIterator (MafIterator *iterator)
virtual std::string	getPropertyName () const =0
virtual DistanceMatrix *	estimateDistanceMatrixForBlock (const MafBlock &block)=0

Private Member Functions
MafBlock *	analyseCurrentBlock_ () throw (Exception)

Detailed Description

Partial implementation for distance estimation iterator.

This iterator calls a distance reconstruction method (to be implemented by the derivated class) and store the resulting distance matrix as an associated block property for the block, before forwarding it.

Definition at line 59 of file AbstractDistanceEstimationMafIterator.h.

Constructor & Destructor Documentation

AbstractDistanceEstimationMafIterator()

bpp::AbstractDistanceEstimationMafIterator::AbstractDistanceEstimationMafIterator ( MafIterator *  iterator )

inline

Definition at line 63 of file AbstractDistanceEstimationMafIterator.h.

Member Function Documentation

analyseCurrentBlock_()

MafBlock* bpp::AbstractDistanceEstimationMafIterator::analyseCurrentBlock_ ( ) throw ( Exception )

inlineprivate

Definition at line 68 of file AbstractDistanceEstimationMafIterator.h.

References estimateDistanceMatrixForBlock(), and getPropertyName().

estimateDistanceMatrixForBlock()

virtual DistanceMatrix* bpp::AbstractDistanceEstimationMafIterator::estimateDistanceMatrixForBlock ( const MafBlock &  block )

pure virtual

Implemented in bpp::MaximumLikelihoodDistanceEstimationMafIterator, and bpp::CountDistanceEstimationMafIterator.

Referenced by analyseCurrentBlock_().

getPropertyName()

virtual std::string bpp::AbstractDistanceEstimationMafIterator::getPropertyName ( ) const

pure virtual

Implemented in bpp::MaximumLikelihoodDistanceEstimationMafIterator, and bpp::CountDistanceEstimationMafIterator.

Referenced by analyseCurrentBlock_().

---

The documentation for this class was generated from the following file:

• Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h