bpp-phyl-omics  2.2.0
bpp::MaximumLikelihoodDistanceEstimationMafIterator Member List

This is the complete list of members for bpp::MaximumLikelihoodDistanceEstimationMafIterator, including all inherited members.

AbstractDistanceEstimationMafIterator(MafIterator *iterator)bpp::AbstractDistanceEstimationMafIteratorinline
distEst_bpp::MaximumLikelihoodDistanceEstimationMafIteratorprivate
estimateDistanceMatrixForBlock(const MafBlock &block)bpp::MaximumLikelihoodDistanceEstimationMafIteratorvirtual
gapsAsUnresolved_bpp::MaximumLikelihoodDistanceEstimationMafIteratorprivate
getPropertyName() constbpp::MaximumLikelihoodDistanceEstimationMafIteratorinlinevirtual
MaximumLikelihoodDistanceEstimationMafIterator(MafIterator *iterator, DistanceEstimation *distEst, double propGapsToKeep=0, bool gapsAsUnresolved=true, const string &paramOpt=OptimizationTools::DISTANCEMETHOD_INIT, bool verbose=true)bpp::MaximumLikelihoodDistanceEstimationMafIteratorinline
MaximumLikelihoodDistanceEstimationMafIterator(const MaximumLikelihoodDistanceEstimationMafIterator &iterator)bpp::MaximumLikelihoodDistanceEstimationMafIteratorinlineprivate
operator=(const MaximumLikelihoodDistanceEstimationMafIterator &iterator)bpp::MaximumLikelihoodDistanceEstimationMafIteratorinlineprivate
paramOpt_bpp::MaximumLikelihoodDistanceEstimationMafIteratorprivate
propGapsToKeep_bpp::MaximumLikelihoodDistanceEstimationMafIteratorprivate