bpp::OutputTreeMafIterator Class Reference

This iterator print an attached tree to a newick file. More...

#include <Bpp/Seq/Io/Maf/OutputTreeMafIterator.h>

Inheritance diagram for bpp::OutputTreeMafIterator:

Collaboration diagram for bpp::OutputTreeMafIterator:

Public Member Functions
	OutputTreeMafIterator (MafIterator *iterator, std::ostream *out, const std::string treeProperty)
MafBlock *	analyseCurrentBlock_ () throw (Exception)

Private Member Functions
	OutputTreeMafIterator (const OutputTreeMafIterator &iterator)
OutputTreeMafIterator &	operator= (const OutputTreeMafIterator &iterator)
void	writeBlock (std::ostream &out, const MafBlock &block) const

Private Attributes
std::ostream *	output_
std::string	treeProperty_
Newick	writer_

Detailed Description

This iterator print an attached tree to a newick file.

Definition at line 64 of file OutputTreeMafIterator.h.

Constructor & Destructor Documentation

OutputTreeMafIterator() [1/2]

bpp::OutputTreeMafIterator::OutputTreeMafIterator ( MafIterator *  iterator, std::ostream *  out, const std::string  treeProperty  )

inline

Definition at line 73 of file OutputTreeMafIterator.h.

OutputTreeMafIterator() [2/2]

bpp::OutputTreeMafIterator::OutputTreeMafIterator ( const OutputTreeMafIterator &  iterator )

inlineprivate

Definition at line 78 of file OutputTreeMafIterator.h.

Member Function Documentation

analyseCurrentBlock_()

MafBlock* bpp::OutputTreeMafIterator::analyseCurrentBlock_ ( ) throw ( Exception )

inline

Definition at line 95 of file OutputTreeMafIterator.h.

References output_, and writeBlock().

operator=()

OutputTreeMafIterator& bpp::OutputTreeMafIterator::operator= ( const OutputTreeMafIterator &  iterator )

inlineprivate

Definition at line 85 of file OutputTreeMafIterator.h.

References output_, treeProperty_, and writer_.

writeBlock()

void OutputTreeMafIterator::writeBlock ( std::ostream &  out, const MafBlock &  block  ) const

private

Definition at line 45 of file OutputTreeMafIterator.cpp.

Referenced by analyseCurrentBlock_().

Member Data Documentation

output_

std::ostream* bpp::OutputTreeMafIterator::output_

private

Definition at line 68 of file OutputTreeMafIterator.h.

Referenced by analyseCurrentBlock_(), and operator=().

treeProperty_

std::string bpp::OutputTreeMafIterator::treeProperty_

private

Definition at line 69 of file OutputTreeMafIterator.h.

Referenced by operator=().

writer_

Newick bpp::OutputTreeMafIterator::writer_

private

Definition at line 70 of file OutputTreeMafIterator.h.

Referenced by operator=().

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The documentation for this class was generated from the following files:

• Bpp/Seq/Io/Maf/OutputTreeMafIterator.h
• Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp