bpp::DRTreeParsimonyData Member List

This is the complete list of members for bpp::DRTreeParsimonyData, including all inherited members.

AbstractTreeParsimonyData(const TreeTemplate< Node > *tree)	bpp::AbstractTreeParsimonyData	inline
AbstractTreeParsimonyData(const AbstractTreeParsimonyData &atpd)	bpp::AbstractTreeParsimonyData	inline
clone() const	bpp::DRTreeParsimonyData	inlinevirtual
DRTreeParsimonyData(const TreeTemplate< Node > *tree)	bpp::DRTreeParsimonyData	inline
DRTreeParsimonyData(const DRTreeParsimonyData &data)	bpp::DRTreeParsimonyData
getArrayPosition(int parentId, int sonId, size_t currentPosition) const	bpp::DRTreeParsimonyData	inlinevirtual
getBitsetsArray(int nodeId, int neighborId)	bpp::DRTreeParsimonyData	inline
getBitsetsArray(int nodeId, int neighborId) const	bpp::DRTreeParsimonyData	inline
getLeafData(int nodeId)	bpp::DRTreeParsimonyData	inline
getLeafData(int nodeId) const	bpp::DRTreeParsimonyData	inline
getNodeData(int nodeId)	bpp::DRTreeParsimonyData	inlinevirtual
getNodeData(int nodeId) const	bpp::DRTreeParsimonyData	inlinevirtual
getNumberOfDistinctSites() const	bpp::DRTreeParsimonyData	inline
getNumberOfSites() const	bpp::DRTreeParsimonyData	inline
getNumberOfStates() const	bpp::DRTreeParsimonyData	inline
getRootArrayPosition(size_t site) const	bpp::AbstractTreeParsimonyData	inlinevirtual
getRootBitset(size_t i) const	bpp::DRTreeParsimonyData	inline
getRootBitsets()	bpp::DRTreeParsimonyData	inline
getRootBitsets() const	bpp::DRTreeParsimonyData	inline
getRootScore(size_t i) const	bpp::DRTreeParsimonyData	inline
getRootScores()	bpp::DRTreeParsimonyData	inline
getRootScores() const	bpp::DRTreeParsimonyData	inline
getScoresArray(int nodeId, int neighborId)	bpp::DRTreeParsimonyData	inline
getScoresArray(int nodeId, int neighborId) const	bpp::DRTreeParsimonyData	inline
getTree() const	bpp::AbstractTreeParsimonyData	inlinevirtual
getTreeP_() const	bpp::AbstractTreeParsimonyData	inlineprotected
getWeight(size_t pos) const	bpp::AbstractTreeParsimonyData	inline
init(const SiteContainer &sites, const StateMap &stateMap)	bpp::DRTreeParsimonyData
init(const Node *node, const SiteContainer &sites, const StateMap &stateMap)	bpp::DRTreeParsimonyData	protected
leafData_	bpp::DRTreeParsimonyData	mutableprivate
nbDistinctSites_	bpp::DRTreeParsimonyData	private
nbSites_	bpp::DRTreeParsimonyData	private
nbStates_	bpp::DRTreeParsimonyData	private
nodeData_	bpp::DRTreeParsimonyData	mutableprivate
operator=(const DRTreeParsimonyData &data)	bpp::DRTreeParsimonyData
bpp::AbstractTreeParsimonyData::operator=(const AbstractTreeParsimonyData &atpd)	bpp::AbstractTreeParsimonyData	inline
reInit()	bpp::DRTreeParsimonyData
reInit(const Node *node)	bpp::DRTreeParsimonyData	protected
rootBitsets_	bpp::DRTreeParsimonyData	mutableprivate
rootPatternLinks_	bpp::AbstractTreeParsimonyData	protected
rootScores_	bpp::DRTreeParsimonyData	mutableprivate
rootWeights_	bpp::AbstractTreeParsimonyData	protected
setTree(const TreeTemplate< Node > *tree)	bpp::DRTreeParsimonyData	inline
setTreeP_(const TreeTemplate< Node > *tree)	bpp::AbstractTreeParsimonyData	inlineprotected
shrunkData_	bpp::DRTreeParsimonyData	private
tree_	bpp::AbstractTreeParsimonyData	protected
TreeParsimonyData()	bpp::TreeParsimonyData	inline
~AbstractTreeParsimonyData()	bpp::AbstractTreeParsimonyData	inlinevirtual
~DRTreeParsimonyData()	bpp::DRTreeParsimonyData	inlinevirtual
~TreeParsimonyData()	bpp::TreeParsimonyData	inlinevirtual