bpp::TreeParsimonyData Class Reference

TreeParsimonyScore data structure. More...

#include <Bpp/Phyl/Parsimony/TreeParsimonyData.h>

Inheritance diagram for bpp::TreeParsimonyData:

Collaboration diagram for bpp::TreeParsimonyData:

Public Member Functions
	TreeParsimonyData ()
virtual	~TreeParsimonyData ()
TreeParsimonyData *	clone () const =0
virtual const TreeTemplate< Node > *	getTree () const =0
virtual size_t	getArrayPosition (int parentId, int sonId, size_t currentPosition) const =0
virtual size_t	getRootArrayPosition (size_t site) const =0
virtual TreeParsimonyNodeData &	getNodeData (int nodeId)=0
virtual const TreeParsimonyNodeData &	getNodeData (int nodeId) const =0

Detailed Description

TreeParsimonyScore data structure.

Stores all the inner computations:

• subtree scores and ancestral states for each node,
• correspondance between sites in the dataset and array indices.

See also

TreeParsimonyNodeData

Definition at line 94 of file TreeParsimonyData.h.

Constructor & Destructor Documentation

TreeParsimonyData()

bpp::TreeParsimonyData::TreeParsimonyData ( )

inline

Definition at line 98 of file TreeParsimonyData.h.

~TreeParsimonyData()

virtual bpp::TreeParsimonyData::~TreeParsimonyData ( )

inlinevirtual

Definition at line 99 of file TreeParsimonyData.h.

Member Function Documentation

clone()

TreeParsimonyData* bpp::TreeParsimonyData::clone ( ) const

pure virtual

Implemented in bpp::DRTreeParsimonyData.

getArrayPosition()

virtual size_t bpp::TreeParsimonyData::getArrayPosition ( int  parentId, int  sonId, size_t  currentPosition  ) const

pure virtual

Implemented in bpp::DRTreeParsimonyData.

getNodeData() [1/2]

virtual TreeParsimonyNodeData& bpp::TreeParsimonyData::getNodeData ( int  nodeId )

pure virtual

Implemented in bpp::DRTreeParsimonyData.

getNodeData() [2/2]

virtual const TreeParsimonyNodeData& bpp::TreeParsimonyData::getNodeData ( int  nodeId ) const

pure virtual

Implemented in bpp::DRTreeParsimonyData.

getRootArrayPosition()

virtual size_t bpp::TreeParsimonyData::getRootArrayPosition ( size_t  site ) const

pure virtual

Implemented in bpp::AbstractTreeParsimonyData.

getTree()

virtual const TreeTemplate<Node>* bpp::TreeParsimonyData::getTree ( ) const

pure virtual

Implemented in bpp::AbstractTreeParsimonyData.

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The documentation for this class was generated from the following file:

• Bpp/Phyl/Parsimony/TreeParsimonyData.h