bpp-seq  2.2.0
AlphabetExceptions.h
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1 //
2 // File: AlphabetExceptions.h
3 // Created by: Julien Dutheil
4 // Created on: Mon Nov 3 16:41:53 2003
5 //
6 
7 /*
8 Copyright or © or Copr. CNRS, (November 17, 2004)
9 
10 This software is a computer program whose purpose is to provide classes
11 for sequences analysis.
12 
13 This software is governed by the CeCILL license under French law and
14 abiding by the rules of distribution of free software. You can use,
15 modify and/ or redistribute the software under the terms of the CeCILL
16 license as circulated by CEA, CNRS and INRIA at the following URL
17 "http://www.cecill.info".
18 
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20 modify and redistribute granted by the license, users are provided only
21 with a limited warranty and the software's author, the holder of the
22 economic rights, and the successive licensors have only limited
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24 
25 In this respect, the user's attention is drawn to the risks associated
26 with loading, using, modifying and/or developing or reproducing the
27 software by the user in light of its specific status of free software,
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35 
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38 */
39 
40 #ifndef _ALPHABETEXCEPTIONS_H_
41 #define _ALPHABETEXCEPTIONS_H_
42 
43 #include <Bpp/Exceptions.h>
44 
45 // From the STL:
46 #include <vector>
47 
48 namespace bpp
49 {
50 
51 class Alphabet;
52 
59  public Exception
60 {
61  private:
63 
64  public:
71  AlphabetException(const std::string& text, const Alphabet* alpha = 0);
72 
73  AlphabetException(const AlphabetException& ae): Exception(ae), alphabet_(ae.alphabet_) {}
75  {
76  Exception::operator=(ae);
77  alphabet_ = ae.alphabet_;
78  return *this;
79  }
80 
81  virtual ~AlphabetException() throw () {}
82 
83  public:
89  virtual const Alphabet* getAlphabet() const { return alphabet_; }
90 };
91 
96  public AlphabetException
97 {
98  protected:
99  std::string c_;
100 
101  public:
109  BadCharException(const std::string & badChar, const std::string & text = "", const Alphabet * alpha = 0);
110 
111  virtual ~BadCharException() throw() {};
112 
113  public:
119  virtual std::string getBadChar() const;
120 };
121 
126  public AlphabetException
127 {
128  protected:
129  int i_;
130 
131  public:
138  BadIntException(int badInt, const std::string& text = "", const Alphabet* alpha = 0);
139 
140  virtual ~BadIntException() throw() {}
141 
142  public:
148  virtual int getBadInt() const;
149 };
150 
157 class AlphabetMismatchException : public Exception
158 {
159  private:
161 
162  public:
163 
171  AlphabetMismatchException(const std::string& text = "", const Alphabet* alpha1 = 0, const Alphabet* alpha2 = 0);
172 
175  {
176  Exception::operator=(ame);
177  alphabet1_ = ame.alphabet1_;
178  alphabet2_ = ame.alphabet2_;
179  return *this;
180  }
181 
182  virtual ~AlphabetMismatchException() throw() {}
183 
184  public:
190  std::vector<const Alphabet *> getAlphabets() const;
191 };
192 
197 {
198  public:
205  CharStateNotSupportedException(const std::string & text = "", const Alphabet * alpha = 0);
206 
207  virtual ~CharStateNotSupportedException() throw() {};
208 };
209 
210 } //end of namespace bpp.
211 
212 #endif //_ALPHABETEXCEPTIONS_H_
213 
An alphabet exception thrown when trying to specify a bad char to the alphabet.
AlphabetMismatchException(const AlphabetMismatchException &ame)
This alphabet is used to deal NumericAlphabet.
virtual int getBadInt() const
Get the integer that threw the exception.
AlphabetException(const AlphabetException &ae)
The Alphabet interface.
Definition: Alphabet.h:130
AlphabetException & operator=(const AlphabetException &ae)
AlphabetMismatchException(const std::string &text="", const Alphabet *alpha1=0, const Alphabet *alpha2=0)
Build a new AlphabetMismatchException object.
AlphabetException(const std::string &text, const Alphabet *alpha=0)
Build a new AlphabetException object.
AlphabetMismatchException & operator=(const AlphabetMismatchException &ame)
BadIntException(int badInt, const std::string &text="", const Alphabet *alpha=0)
Build a new BadIntException.
The alphabet exception base class.
const Alphabet * alphabet_
std::vector< const Alphabet * > getAlphabets() const
Get the alphabets that do not match.
Exception thrown in case no character is available for a certain state in an alphabet.
virtual const Alphabet * getAlphabet() const
Get the alphabet that threw the exception.
An alphabet exception thrown when trying to specify a bad int to the alphabet.
Exception thrown when two alphabets do not match.
CharStateNotSupportedException(const std::string &text="", const Alphabet *alpha=0)
Build a new CharStateNotSupportedException.
virtual std::string getBadChar() const
Get the character that threw the exception.
BadCharException(const std::string &badChar, const std::string &text="", const Alphabet *alpha=0)
Build a new BadCharException.