bpp-seq  2.2.0
SiteExceptions.h
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1 //
2 // File: SiteExceptions.h
3 // Author : Julien Dutheil
4 // Created on: dim mar 7 2004
5 //
6 
7 /*
8 Copyright or © or Copr. Bio++ Development Team, (November 17, 2004)
9 
10 This software is a computer program whose purpose is to provide classes
11 for sequences analysis.
12 
13 This software is governed by the CeCILL license under French law and
14 abiding by the rules of distribution of free software. You can use,
15 modify and/ or redistribute the software under the terms of the CeCILL
16 license as circulated by CEA, CNRS and INRIA at the following URL
17 "http://www.cecill.info".
18 
19 As a counterpart to the access to the source code and rights to copy,
20 modify and redistribute granted by the license, users are provided only
21 with a limited warranty and the software's author, the holder of the
22 economic rights, and the successive licensors have only limited
23 liability.
24 
25 In this respect, the user's attention is drawn to the risks associated
26 with loading, using, modifying and/or developing or reproducing the
27 software by the user in light of its specific status of free software,
28 that may mean that it is complicated to manipulate, and that also
29 therefore means that it is reserved for developers and experienced
30 professionals having in-depth computer knowledge. Users are therefore
31 encouraged to load and test the software's suitability as regards their
32 requirements in conditions enabling the security of their systems and/or
33 data to be ensured and, more generally, to use and operate it in the
34 same conditions as regards security.
35 
36 The fact that you are presently reading this means that you have had
37 knowledge of the CeCILL license and that you accept its terms.
38 */
39 
40 #ifndef _SITEEXCEPTIONS_H_
41 #define _SITEEXCEPTIONS_H_
42 
43 #include <Bpp/Exceptions.h>
44 
45 namespace bpp
46 {
47 
48 class Site;
49 
56  public Exception
57 {
58  private:
59 
63  const Site* site_;
64 
65  public: // Class constructor
66 
73  SiteException(const std::string& text, const Site* s = 0);
74 
75  SiteException(const SiteException& se): Exception(se), site_(se.site_) {}
76 
78  {
79  Exception::operator=(se);
80  site_ = se.site_;
81  return *this;
82  }
83 
84  // Class destructor
85  virtual ~SiteException() throw() {}
86 
87  public:
88 
94  virtual const Site* getSite() const { return site_; };
95 };
96 
101  public SiteException
102 {
103  public:
104  EmptySiteException(const std::string& text, const Site* s = 0): SiteException(text, s) {}
105 
106  virtual ~EmptySiteException() throw() {}
107 };
108 
113  public SiteException
114 {
115  public:
116  SiteWithGapException(const std::string& text, const Site* s = 0): SiteException(text, s) {}
117 
118  virtual ~SiteWithGapException() throw() {}
119 };
120 
121 } //end of namespace bpp.
122 
123 #endif // _SITEEXCEPTIONS_H_
124 
SiteWithGapException(const std::string &text, const Site *s=0)
This alphabet is used to deal NumericAlphabet.
The site exception base class.
const Site * site_
A pointer toward a site object.
virtual ~SiteException()
EmptySiteException(const std::string &text, const Site *s=0)
SiteException(const SiteException &se)
Exception sent when a empty site is found.
Exception sent when a site containing gap is found.
SiteException & operator=(const SiteException &se)
virtual const Site * getSite() const
Get the site that threw the exception.
SiteException(const std::string &text, const Site *s=0)
Build a new SiteException object.
The Site class.
Definition: Site.h:61