bpp::AASEAInf10Index Class Reference

Percentage of amino acids having a Solvent Exposed Area below 10 Angström^2 for each type of amino acid, according to http://prowl.rockefeller.edu/aainfo/access.htm. More...

#include <Bpp/Seq/AlphabetIndex/AASEAInf10Index.h>

Inheritance diagram for bpp::AASEAInf10Index:

Collaboration diagram for bpp::AASEAInf10Index:

Public Member Functions
	AASEAInf10Index ()
virtual	~AASEAInf10Index ()
AASEAInf10Index *	clone () const
double	getIndex (int state) const throw (BadIntException)
	Get the index associated to a state. More...
double	getIndex (const std::string &state) const throw (BadCharException)
	Get the index associated to a state. More...
std::vector< double > *	getIndexVector () const
const Alphabet *	getAlphabet () const
	Get the alphabet associated to this index. More...

Private Attributes
std::vector< double >	seaInf10_

Detailed Description

Percentage of amino acids having a Solvent Exposed Area below 10 Angström^2 for each type of amino acid, according to http://prowl.rockefeller.edu/aainfo/access.htm.

Definition at line 52 of file AASEAInf10Index.h.

Constructor & Destructor Documentation

AASEAInf10Index()

bpp::AASEAInf10Index::AASEAInf10Index ( )

inline

Definition at line 59 of file AASEAInf10Index.h.

References seaInf10_.

Referenced by clone().

~AASEAInf10Index()

virtual bpp::AASEAInf10Index::~AASEAInf10Index ( )

inlinevirtual

Definition at line 85 of file AASEAInf10Index.h.

Member Function Documentation

clone()

AASEAInf10Index* bpp::AASEAInf10Index::clone ( ) const

inlinevirtual

Implements bpp::AlphabetIndex1.

Definition at line 87 of file AASEAInf10Index.h.

References AASEAInf10Index().

getAlphabet()

const Alphabet* bpp::AASEAInf10Index::getAlphabet ( ) const

inlinevirtual

Get the alphabet associated to this index.

Returns

Alphabet The alphabet associated to this index.

Implements bpp::AlphabetIndex1.

Definition at line 103 of file AASEAInf10Index.h.

References bpp::AlphabetTools::PROTEIN_ALPHABET.

getIndex() [1/2]

double bpp::AASEAInf10Index::getIndex ( int  state ) const throw ( BadIntException )

inlinevirtual

Get the index associated to a state.

Parameters

state

The state to consider, as a int value.

Returns

The index associated to the state

Implements bpp::AlphabetIndex1.

Definition at line 90 of file AASEAInf10Index.h.

References bpp::AlphabetTools::PROTEIN_ALPHABET, and seaInf10_.

getIndex() [2/2]

double bpp::AASEAInf10Index::getIndex ( const std::string &  state ) const throw ( BadCharException )

inlinevirtual

Get the index associated to a state.

Parameters

state

The state to consider, as a string value.

Returns

The index associated to the state

Implements bpp::AlphabetIndex1.

Definition at line 96 of file AASEAInf10Index.h.

References bpp::LetterAlphabet::charToInt(), bpp::AlphabetTools::PROTEIN_ALPHABET, and seaInf10_.

getIndexVector()

std::vector<double>* bpp::AASEAInf10Index::getIndexVector ( ) const

inlinevirtual

Returns

A vector object with all indices.

Implements bpp::AlphabetIndex1.

Definition at line 101 of file AASEAInf10Index.h.

References seaInf10_.

Member Data Documentation

seaInf10_

std::vector<double> bpp::AASEAInf10Index::seaInf10_

private

Definition at line 56 of file AASEAInf10Index.h.

Referenced by AASEAInf10Index(), getIndex(), and getIndexVector().

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The documentation for this class was generated from the following file:

• Bpp/Seq/AlphabetIndex/AASEAInf10Index.h