bpp-seq
2.2.0
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This is the base class to describe states in an Alphabet. More...
#include <Bpp/Seq/Alphabet/AlphabetState.h>
Public Member Functions | |
AlphabetState (int num, const std::string &letter, const std::string &name) | |
virtual | ~AlphabetState () |
int | getNum () const |
Get the state's number. More... | |
void | setNum (int num) |
Set the state's number. More... | |
const std::string & | getLetter () const |
Get the letter(s) corresponding to the state. More... | |
void | setLetter (const std::string &letter) |
Set the letter(s) of the state. More... | |
const std::string & | getName () const |
Get the name of the state. More... | |
void | setName (const std::string &name) |
Set the name of the state. More... | |
bool | operator== (AlphabetState &l2) |
operator == More... | |
The Clonable interface. | |
AlphabetState * | clone () const |
Private Attributes | |
int | num_ |
std::string | letter_ |
std::string | name_ |
This is the base class to describe states in an Alphabet.
Definition at line 54 of file AlphabetState.h.
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inline |
Definition at line 61 of file AlphabetState.h.
Referenced by clone().
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inlinevirtual |
Definition at line 64 of file AlphabetState.h.
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Definition at line 76 of file AlphabetState.h.
References AlphabetState().
Referenced by bpp::CaseMaskedAlphabet::CaseMaskedAlphabet().
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Get the letter(s) corresponding to the state.
The letter is a string because it may more than one char (for instance: codon).
Definition at line 99 of file AlphabetState.h.
References letter_.
Referenced by bpp::CaseMaskedAlphabet::CaseMaskedAlphabet(), bpp::AbstractAlphabet::getCharCodeAt(), and bpp::AbstractAlphabet::updateMaps_().
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Get the name of the state.
Definition at line 112 of file AlphabetState.h.
References name_.
Referenced by bpp::CaseMaskedAlphabet::CaseMaskedAlphabet().
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Get the state's number.
Definition at line 83 of file AlphabetState.h.
References num_.
Referenced by bpp::CaseMaskedAlphabet::CaseMaskedAlphabet(), bpp::AbstractAlphabet::getIntCodeAt(), bpp::NucleicAlphabet::getOverlap(), operator==(), bpp::NucleicAlphabet::subtract(), and bpp::AbstractAlphabet::updateMaps_().
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operator ==
Comparison is done on state num
Definition at line 125 of file AlphabetState.h.
References getNum().
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Set the letter(s) of the state.
letter | The state's letter. |
Definition at line 105 of file AlphabetState.h.
References letter_.
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Set the name of the state.
name | The state's name |
Definition at line 118 of file AlphabetState.h.
References name_.
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Set the state's number.
num | The state's number. |
Definition at line 89 of file AlphabetState.h.
References num_.
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private |
Definition at line 57 of file AlphabetState.h.
Referenced by getLetter(), and setLetter().
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private |
Definition at line 58 of file AlphabetState.h.
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private |
Definition at line 56 of file AlphabetState.h.