bpp-seq
2.2.0
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Polarity index used in Grantham (1974). More...
#include <Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h>
Public Member Functions | |
GranthamAAPolarityIndex () | |
virtual | ~GranthamAAPolarityIndex () |
GranthamAAPolarityIndex * | clone () const |
double | getIndex (int state) const throw (BadIntException) |
Get the index associated to a state. More... | |
double | getIndex (const std::string &state) const throw (BadCharException) |
Get the index associated to a state. More... | |
std::vector< double > * | getIndexVector () const |
const Alphabet * | getAlphabet () const |
Get the alphabet associated to this index. More... | |
Private Attributes | |
std::vector< double > | polarity_ |
Polarity index used in Grantham (1974).
Definition at line 67 of file GranthamAAPolarityIndex.h.
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inline |
Definition at line 74 of file GranthamAAPolarityIndex.h.
References polarity_.
Referenced by clone().
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inlinevirtual |
Definition at line 100 of file GranthamAAPolarityIndex.h.
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inlinevirtual |
Implements bpp::AlphabetIndex1.
Definition at line 102 of file GranthamAAPolarityIndex.h.
References GranthamAAPolarityIndex().
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inlinevirtual |
Get the alphabet associated to this index.
Implements bpp::AlphabetIndex1.
Definition at line 118 of file GranthamAAPolarityIndex.h.
References bpp::AlphabetTools::PROTEIN_ALPHABET.
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inlinevirtual |
Get the index associated to a state.
state | The state to consider, as a int value. |
Implements bpp::AlphabetIndex1.
Definition at line 105 of file GranthamAAPolarityIndex.h.
References polarity_, and bpp::AlphabetTools::PROTEIN_ALPHABET.
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inlinevirtual |
Get the index associated to a state.
state | The state to consider, as a string value. |
Implements bpp::AlphabetIndex1.
Definition at line 111 of file GranthamAAPolarityIndex.h.
References bpp::LetterAlphabet::charToInt(), polarity_, and bpp::AlphabetTools::PROTEIN_ALPHABET.
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inlinevirtual |
Implements bpp::AlphabetIndex1.
Definition at line 116 of file GranthamAAPolarityIndex.h.
References polarity_.
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private |
Definition at line 71 of file GranthamAAPolarityIndex.h.
Referenced by getIndex(), getIndexVector(), and GranthamAAPolarityIndex().