#include <Bpp/Seq/Io/OSequence.h>

Inheritance diagram for bpp::OAlignment:

Collaboration diagram for bpp::OAlignment:

Public Member Functions
	OAlignment ()

virtual	~OAlignment ()

virtual void	writeAlignment (std::ostream &output, const SiteContainer &sc) const =0 throw (Exception)
	Write a container to a stream. More...

virtual void	writeAlignment (const std::string &path, const SiteContainer &sc, bool overwrite) const =0 throw (Exception)
	Write a container to a file. More...

const std::string	getDataType () const

Detailed Description

The OAlignment interface.

This interface defines the basic methods for writing alignments to a file.

Definition at line 95 of file OSequence.h.

Constructor & Destructor Documentation

◆ OAlignment()

bpp::OAlignment::OAlignment ( )

inline

Definition at line 99 of file OSequence.h.

◆ ~OAlignment()

virtual bpp::OAlignment::~OAlignment ( )

inlinevirtual

Definition at line 100 of file OSequence.h.

Member Function Documentation

◆ getDataType()

const std::string bpp::IOSequence::getDataType ( ) const

inlineinherited

Definition at line 65 of file IoSequence.h.

◆ writeAlignment() [1/2]

virtual void bpp::OAlignment::writeAlignment	(	std::ostream &	output,
		const SiteContainer &	sc
	)		const
throw	(	Exception
	)

pure virtual

Write a container to a stream.

Parameters

output	The output stream where to write.
sc	The container to write.

Exceptions

Exception If the file is not in the specified format.

Implemented in bpp::Phylip, bpp::Clustal, bpp::AbstractOSequence, bpp::Stockholm, and bpp::AbstractOAlignment.

◆ writeAlignment() [2/2]

virtual void bpp::OAlignment::writeAlignment	(	const std::string &	path,
		const SiteContainer &	sc,
		bool	overwrite
	)		const
throw	(	Exception
	)