#include <Bpp/Seq/Io/OSequence.h>

Inheritance diagram for bpp::OSequence:

Collaboration diagram for bpp::OSequence:

Public Member Functions
	OSequence ()

virtual	~OSequence ()

virtual void	writeSequences (std::ostream &output, const SequenceContainer &sc) const =0 throw (Exception)
	Write a container to a stream. More...

virtual void	writeSequences (const std::string &path, const SequenceContainer &sc, bool overwrite) const =0 throw (Exception)
	Write a container to a file. More...

const std::string	getDataType () const

Detailed Description

The OSequence interface.

This interface defines the basic methods for writing sequences to a file.

Definition at line 58 of file OSequence.h.

Constructor & Destructor Documentation

◆ OSequence()

bpp::OSequence::OSequence ( )

inline

Definition at line 62 of file OSequence.h.

◆ ~OSequence()

virtual bpp::OSequence::~OSequence ( )

inlinevirtual

Definition at line 63 of file OSequence.h.

Member Function Documentation

◆ getDataType()

const std::string bpp::IOSequence::getDataType ( ) const

inlineinherited

Definition at line 65 of file IoSequence.h.

◆ writeSequences() [1/2]

virtual void bpp::OSequence::writeSequences	(	std::ostream &	output,
		const SequenceContainer &	sc
	)		const
throw	(	Exception
	)

pure virtual

Write a container to a stream.

Parameters

output	The output stream where to write.
sc	The container to write.

Exceptions

Exception If the file is not in the specified format.

Implemented in bpp::Mase, bpp::Fasta, and bpp::AbstractOSequence.

◆ writeSequences() [2/2]

virtual void bpp::OSequence::writeSequences	(	const std::string &	path,
		const SequenceContainer &	sc,
		bool	overwrite
	)		const
throw	(	Exception
	)