3.8 Writing sequences/alignments to files

output.sequence.file = {path}

The output file where to write the sequences.

output.sequence.format = {sequence format description}

The output file format, using the same syntax as for reading (see Sequences). Only formats Fasta, Mase and Phylip are supported for writing. In addition, most of the formats support the length argument, that specifies the maximum number of sequence characters to output on each line (default set to 100).