3.9 Writing trees to files

output.tree.file = {path}

The phylogenetic tree file to write to.

output.tree.format = {Newick|Nexus|NHX}

The format of the output tree file.

Some programs may require that you write multiple trees to a file. The corresponding options are then:

output.trees.file = {path}

The file that will contain multiple trees.

output.trees.format = {Newick|Nexus|NHX}

The format of the output tree file.