4.9 BppReroot: Bio++ Serial Tree Re-rooting

input.trees.file={path}

A path toward multi-trees file (newick).

outgroups.file={path}

A path toward a file containing the different levels of outgroups.

print.option={boolean}

If set to true, the unrootable trees are printed as unrooted in the output file, otherwise the unrootable trees are not printed.

tryAgain.option={boolean}

If set to true and ReRoot finds a non-monophyletic outgroup, it tries the next outgroup. Otherwise, if ReRoot finds a non-monophyletic outgroup, the analysis for this tree is interrupted. No more outgroup are analysed.

output.trees.file={path}

File where to write the rerooted trees.