Deprecated Interface for (Re-)folding Paths, Saddle Points, and Energy Barriers

Detailed Description

Collaboration diagram for Deprecated Interface for (Re-)folding Paths, Saddle Points, and Energy Barriers:

Typedefs
typedef struct vrna_path_s	path_t
	Old typename of vrna_path_s. More...

Functions
int	find_saddle (const char *seq, const char *s1, const char *s2, int width)
	Find energy of a saddle point between 2 structures (search only direct path) More...
void	free_path (vrna_path_t *path)
	Free memory allocated by get_path() function. More...
vrna_path_t *	get_path (const char *seq, const char *s1, const char *s2, int width)
	Find refolding path between 2 structures (search only direct path) More...

Typedef Documentation

typedef struct vrna_path_s path_t

#include <ViennaRNA/landscape/paths.h>

Old typename of vrna_path_s.

Deprecated:

Use vrna_path_t instead!

Function Documentation

int find_saddle	(	const char *	seq,
		const char *	s1,
		const char *	s2,
		int	width
	)

#include <ViennaRNA/landscape/findpath.h>

Find energy of a saddle point between 2 structures (search only direct path)

Deprecated:

Use vrna_path_findpath_saddle() instead!

Parameters

seq	RNA sequence
s1	A pointer to the character array where the first secondary structure in dot-bracket notation will be written to
s2	A pointer to the character array where the second secondary structure in dot-bracket notation will be written to
width	integer how many strutures are being kept during the search

Returns

the saddle energy in 10cal/mol

void free_path

(

vrna_path_t *

path

)

#include <ViennaRNA/landscape/findpath.h>

Free memory allocated by get_path() function.

Deprecated:

Use vrna_path_free() instead!

Parameters

path	pointer to memory to be freed

vrna_path_t* get_path	(	const char *	seq,
		const char *	s1,
		const char *	s2,
		int	width
	)

#include <ViennaRNA/landscape/findpath.h>

Find refolding path between 2 structures (search only direct path)

Deprecated:

Use vrna_path_findpath() instead!

Parameters

seq	RNA sequence
s1	A pointer to the character array where the first secondary structure in dot-bracket notation will be written to
s2	A pointer to the character array where the second secondary structure in dot-bracket notation will be written to
width	integer how many strutures are being kept during the search

Returns

direct refolding path between two structures