findpath.h File Reference

A breadth-first search heuristic for optimal direct folding paths. More...

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Functions
int	vrna_path_findpath_saddle (vrna_fold_compound_t *fc, const char *s1, const char *s2, int width)
	Find energy of a saddle point between 2 structures (search only direct path) More...
int	vrna_path_findpath_saddle_ub (vrna_fold_compound_t *fc, const char *s1, const char *s2, int width, int maxE)
	Find energy of a saddle point between 2 structures (search only direct path) More...
vrna_path_t *	vrna_path_findpath (vrna_fold_compound_t *fc, const char *s1, const char *s2, int width)
	Find refolding path between 2 structures (search only direct path) More...
vrna_path_t *	vrna_path_findpath_ub (vrna_fold_compound_t *fc, const char *s1, const char *s2, int width, int maxE)
	Find refolding path between 2 structures (search only direct path) More...
int	find_saddle (const char *seq, const char *s1, const char *s2, int width)
	Find energy of a saddle point between 2 structures (search only direct path) More...
void	free_path (vrna_path_t *path)
	Free memory allocated by get_path() function. More...
vrna_path_t *	get_path (const char *seq, const char *s1, const char *s2, int width)
	Find refolding path between 2 structures (search only direct path) More...

Detailed Description

A breadth-first search heuristic for optimal direct folding paths.