Methods to generate particular paths such as gradient or random walks through the energy landscape of an RNA sequence. More...

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Macros
#define	VRNA_PATH_STEEPEST_DESCENT 128
	Option flag to request a steepest descent / gradient path. More...

#define	VRNA_PATH_RANDOM 256
	Option flag to request a random walk path. More...

#define	VRNA_PATH_NO_TRANSITION_OUTPUT 512
	Option flag to omit returning the transition path. More...

#define	VRNA_PATH_DEFAULT (VRNA_PATH_STEEPEST_DESCENT \| VRNA_MOVESET_DEFAULT)
	Option flag to request defaults (steepest descent / default move set) More...

Functions
vrna_move_t *	vrna_path (vrna_fold_compound_t vc, short pt, unsigned int steps, unsigned int options)
	Compute a path, store the final structure, and return a list of transition moves from the start to the final structure. More...

vrna_move_t *	vrna_path_gradient (vrna_fold_compound_t vc, short pt, unsigned int options)
	Compute a steepest descent / gradient path, store the final structure, and return a list of transition moves from the start to the final structure. More...

vrna_move_t *	vrna_path_random (vrna_fold_compound_t vc, short pt, unsigned int steps, unsigned int options)
	Generate a random walk / path of a given length, store the final structure, and return a list of transition moves from the start to the final structure. More...

Detailed Description

Methods to generate particular paths such as gradient or random walks through the energy landscape of an RNA sequence.

Macros