RNAlib-2.4.14
walk.h
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1 #ifndef VIENNA_RNA_PACKAGE_WALK_H
2 #define VIENNA_RNA_PACKAGE_WALK_H
3 
11 #include <ViennaRNA/fold_compound.h>
12 #include <ViennaRNA/landscape/move.h>
13 
24 #define VRNA_PATH_STEEPEST_DESCENT 128
25 
30 #define VRNA_PATH_RANDOM 256
31 
36 #define VRNA_PATH_NO_TRANSITION_OUTPUT 512
37 
43 #define VRNA_PATH_DEFAULT (VRNA_PATH_STEEPEST_DESCENT | VRNA_MOVESET_DEFAULT)
44 
73 vrna_move_t *
74 vrna_path(vrna_fold_compound_t *vc,
75  short *pt,
76  unsigned int steps,
77  unsigned int options);
78 
79 
101 vrna_move_t *
102 vrna_path_gradient(vrna_fold_compound_t *vc,
103  short *pt,
104  unsigned int options);
105 
106 
129 vrna_move_t *
130 vrna_path_random(vrna_fold_compound_t *vc,
131  short *pt,
132  unsigned int steps,
133  unsigned int options);
134 
135 
140 #endif /* VIENNA_RNA_PACKAGE_WALK_H */
vrna_path_random
vrna_move_t * vrna_path_random(vrna_fold_compound_t *vc, short *pt, unsigned int steps, unsigned int options)
Generate a random walk / path of a given length, store the final structure, and return a list of tran...
vrna_path
vrna_move_t * vrna_path(vrna_fold_compound_t *vc, short *pt, unsigned int steps, unsigned int options)
Compute a path, store the final structure, and return a list of transition moves from the start to th...
vrna_fc_s
The most basic data structure required by many functions throughout the RNAlib.
Definition: fold_compound.h:132
vrna_path_gradient
vrna_move_t * vrna_path_gradient(vrna_fold_compound_t *vc, short *pt, unsigned int options)
Compute a steepest descent / gradient path, store the final structure, and return a list of transitio...
move.h
Methods to operate with structural neighbors of RNA secondary structures.
fold_compound.h
The Basic Fold Compound API.
vrna_move_s
An atomic representation of the transition / move from one structure to its neighbor.
Definition: move.h:73