Methods to operate with structural neighbors of RNA secondary structures. More...

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Data Structures
struct	vrna_move_s
	An atomic representation of the transition / move from one structure to its neighbor. More...

Macros
#define	VRNA_MOVESET_INSERTION 4
	Option flag indicating insertion move. More...

#define	VRNA_MOVESET_DELETION 8
	Option flag indicating deletion move. More...

#define	VRNA_MOVESET_SHIFT 16
	Option flag indicating shift move. More...

#define	VRNA_MOVESET_NO_LP 32
	Option flag indicating moves without lonely base pairs. More...

#define	VRNA_MOVESET_DEFAULT (VRNA_MOVESET_INSERTION \| VRNA_MOVESET_DELETION)
	Option flag indicating default move set, i.e. insertions/deletion of a base pair. More...

Typedefs
typedef struct vrna_move_s	vrna_move_t
	A single move that transforms a secondary structure into one of its neighbors.

Functions
vrna_move_t	vrna_move_init (int pos_5, int pos_3)
	Create an atomic move. More...

void	vrna_move_list_free (vrna_move_t *moves)

void	vrna_move_apply (short pt, const vrna_move_t m)
	Apply a particular move / transition to a secondary structure, i.e. transform a structure. More...

int	vrna_move_is_removal (const vrna_move_t *m)
	Test whether a move is a base pair removal. More...

int	vrna_move_is_insertion (const vrna_move_t *m)
	Test whether a move is a base pair insertion. More...

int	vrna_move_is_shift (const vrna_move_t *m)
	Test whether a move is a base pair shift. More...

int	vrna_move_compare (const vrna_move_t a, const vrna_move_t b, const short *pt)
	Compare two moves. More...

Detailed Description

Methods to operate with structural neighbors of RNA secondary structures.

Data Structures